cran: gplots | Projects | Ecosyste.ms: Papers

10.3390/vetsci6010004

Heat Stress Modulates Brain Monoamines and Their Metabolites Production in Broiler Chickens Co-Infected with Clostridium perfringens Type A and Eimeria spp.
Cited by: 9
Author(s): Atílio Sersun Calefi, Juliana Garcia da Silva Fonseca, Catarina Augusta de Queiroz Nunes, Ana Paula Nascimento de Lima, W.M. Quinteiro-Filho, Jorge Camilo Flório, Adriano Zager, Antônio José Piantino Ferreira, João Palermo-Neto
Software Mentions: 2
Published: over 7 years ago

10.1080/21505594.2020.1750123

Malate enhances survival of zebrafish against Vibrio alginolyticus infection in the same manner as taurine
Cited by: 35
Author(s): Meisongzhu Yang, Di Xu, Dai-xiao Yang, Lü Li, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 2
Published: over 6 years ago

10.3390/v11090847

Rice Dwarf Virus Small RNA Profiles in Rice and Leafhopper Reveal Distinct Patterns in Cross-Kingdom Hosts
Cited by: 1
Author(s): Yu Wang, Rui Qiao, Chunhong Wei, Yang Li
Software Mentions: 2
Published: almost 7 years ago

10.12688/wellcomeopenres.15452.1

Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites
Cited by: 10
Author(s): Andrew W. Pountain, Michael P. Barrett
Software Mentions: 2
Published: almost 7 years ago

10.3897/zookeys.540.9649

Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae)
Cited by: 13
Author(s): Lucie Vaníčková, Radka Břízová, Antonio Pompeiano, Luana Lima Ferreira, Nathaly Costa de Aquino, Raphael de Farias Tavares, Laura D. Rodriguez, Adriana de Lima Mendonça, Nelson A. Canal, Ruth R. Do Nascimento
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13071-019-3506-8

Anopheles aquasalis transcriptome reveals autophagic responses to Plasmodium vivax midgut invasion
Cited by: 7
Author(s): Rosa Amélia Gonçalves Santana, Maurício Oliveira, Iria Cabral, Rubens Celso Andrade Silva, Débora Raysa Teixeira de Sousa, L. S. Ferreira, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Patrícia Abrantes, Maria das Graças Vale Barbosa Guerra, Henrique Silveira
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-018-3007-1

Hints on T cell responses in a fish-parasite model: Enteromyxum leei induces differential expression of T cell signature molecules depending on the organ and the infection status
Cited by: 24
Author(s): M. Carla Piazzon, Itziar Estensoro, Josep Àlvar Calduch-Giner, R. del Pozo, Amparo Picard‐Sánchez, Jaume Pérez‐Sánchez, Ariadna Sitjà‐Bobadilla
Software Mentions: 2
Published: about 8 years ago

10.1186/s13071-016-1642-y

CAP protein superfamily members in Toxocara canis
Cited by: 6
Author(s): Andreas J. Stroehlein, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Andreas Hofmann, Paul W. Sternberg, Abdul Jabbar, Robin B. Gasser
Software Mentions: 2
Published: about 10 years ago

10.1186/s13071-019-3405-z

Interpreting mosquito feeding patterns in Australia through an ecological lens: an analysis of blood meal studies
Cited by: 18
Author(s): Eloise Stephenson, Amanda K. Murphy, Cassie C. Jansen, Alison J. Peel, Hamish McCallum
Software Mentions: 2
Published: over 7 years ago

10.3390/pathogens6040045

The Use of Hyperimmune Chicken Reference Sera Is Not Appropriate for the Validation of Influenza Pseudotype Neutralization Assays
Cited by: 0
Author(s): Francesca Ferrara, Eleonora Molesti, Simon D. Scott, Giovanni Cattoli, Nigel Temperton
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.10053

Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism
Cited by: 9
Author(s): Fernando Carlos Gómez-Meriño, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.9054

Intra-lake response of Arcellinida (testate lobose amoebae) to gold mining-derived arsenic contamination in northern Canada: Implications for environmental monitoring
Cited by: 5
Author(s): Nawaf A. Nasser, R. Timothy Patterson, Jennifer M. Galloway, Hendrik Falck
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.1597

Comparative morphology of the mouthparts of the megadiverse South African monkey beetles (Scarabaeidae: Hopliini): feeding adaptations and guild structure
Cited by: 20
Author(s): Florian Karolyi, Teresa Hansal, Harald W. Krenn, Jonathan F. Colville
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.8101

Co-expression analysis and ceRNA network reveal eight novel potential lncRNA biomarkers in hepatocellular carcinoma
Cited by: 6
Author(s): Renchao Zou, Zhitian Shi, Shufeng Xiao, Ke Yang, Haoran Tang, Taihu Wu, Zhitang Guo, Ni Fan, Sanqi An, Lin Wang
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.8176

Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.6526

TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character ofShewanella putrefaciensstrain Pdp11
Cited by: 3
Author(s): Pedro Seoane, Silvana Tapia‐Paniagua, Rocío Bautista, Elena Alcaide, Consuelo Esteve, Eduardo Martínez‐Manzanares, M.C. Balebona, M. Gonzalo Claros, Miguel A. Moriñigo
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3698

Genomic and functional analysis ofRomboutsia ilealisCRIBTreveals adaptation to the small intestine
Cited by: 74
Author(s): J. Gerritsen, Bastian Hornung, Bernadet Renckens, Sacha A. F. T. van Hijum, Vítor A. P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.10678

TET2 mutations in acute myeloid leukemia: a comprehensive study in patients of Sindh, Pakistan
Cited by: 4
Author(s): Abdul Rehman Shaikh, Ikram Uddin Ujjan, Muhammad Irfan, Arshi Naz, Tahir Shamsi, Muhammad Tariq Masood Khan, Muhammad Shakeel
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7380

Construction and integrated analysis of crosstalking ceRNAs networks in laryngeal squamous cell carcinoma
Cited by: 18
Author(s): Yuehui Liu, Fan Ye
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.11386

Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements
Cited by: 18
Author(s): Jose Luis Gonzalez-Pimentel, Tamara Martin-Pozas, Valme Jurado, Ana Z. Miller, Ana Teresa Caldeira, Octavio Fernandez-Lorenzo, Sergio Sánchez‐Moral, Cesáreo Sáiz‐Jiménez
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.14171

The mitochondrial‐derived peptide MOTS‐c is a regulator of plasma metabolites and enhances insulin sensitivity
Cited by: 33
Author(s): Su-Jeong Kim, Brendan Miller, Hemal H. Mehta, Jialin Xiao, Junxiang Wan, Thalida Em Arpawong, Kelvin Yen, Pinchas Cohen
Software Mentions: 2
Published: about 7 years ago

10.1111/tpj.13601

Live‐cell <scp>CRISPR</scp> imaging in plants reveals dynamic telomere movements
Cited by: 101
Author(s): Steven Dreißig, Simon Schiml, Patrick Schindele, Oda Weiss, Twan Rutten, Veit Schubert, Evgeny Gladilin, Michael Florian Mette, Holger Puchta, Andreas Houben
Software Mentions: 2
Published: about 9 years ago

10.3390/plants10081720

Comparison of Drought and Heat Resistance Strategies among Six Populations of Solanum chilense and Two Cultivars of Solanum lycopersicum
Cited by: 9
Author(s): Rémi Blanchard-Gros, Servane Bigot, Juan-Pablo Martínez, Stanley Lutts, Gea Guerriero, Muriel Quinet
Software Mentions: 2
Published: about 5 years ago

10.3390/plants8120589

Secoiridoids Metabolism Response to Wounding in Common Centaury (Centaurium erythraea Rafn) Leaves
Cited by: 5
Author(s): Jelena Božunović, Marijana Škorić, Dragana Matekalo, Suzana Živković, Milan Dragićević, Neda Aničić, Biljana Filipović, Tijana Banjanac, Branislav Šiler, Danijela Mišić
Software Mentions: 2
Published: over 6 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9030405

De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.1000494

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome
Cited by: 175
Author(s): Yong E. Zhang, Maria D. Vibranovski, Patrick Landback, Gabriel Marais, Manyuan Long
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pbio.2006519

Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes
Cited by: 41
Author(s): Haojun Yang, Martina Ralle, Michael J. Wolfgang, Neha Dhawan, Jason L. Burkhead, Susana Rodriguez, Jack H. Kaplan, G. William Wong, Norman J. Haughey, Svetlana Lutsenko
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pbio.1001430

The Nuclear Effector of Wnt-Signaling, Tcf1, Functions as a T-Cell–Specific Tumor Suppressor for Development of Lymphomas
Cited by: 66
Author(s): Machteld M. Tiemessen, M.R.M. Baert, Tom Schonewille, Martijn H. Brugman, Farbod Famili, Daniela Salvatori, Jules P.P. Meijerink, Uğur Özbek, Hans Clevers, Jacques J. M. van Dongen, Frank J. T. Staal
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pcbi.1004107

Protein Complexes in Bacteria
Cited by: 17
Author(s): J. Harry Caufield, Marco A Abreu, Christopher Wimble, Peter Uetz
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1004868

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
Cited by: 202
Author(s): Hiroaki Okae, Hayato Chiba, Hitoshi Hiura, Hirofumi Hamada, Akiko Satô, Takafumi Utsunomiya, Hiroyuki Kikuchi, Hiroaki Yoshida, Atsushi Tanaka, Mikita Suyama, Takahiro Arima
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1007258

The long-range interaction map of ribosomal DNA arrays
Cited by: 32
Author(s): Shui Yu, Bernardo Lemos
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pgen.1005835

Type One Protein Phosphatase 1 and Its Regulatory Protein Inhibitor 2 Negatively Regulate ABA Signaling
Cited by: 55
Author(s): Yueh-Ju Hou, Yingfang Zhu, Pengcheng Wang, Yanping Zhao, Shaojun Xie, Giorgia Batelli, Bangshing Wang, Cheng‐Guo Duan, Xingang Wang, Xing Lü, Mingguang Lei, Jun Yan, Xiaohong Zhu, Jian‐Kang Zhu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pgen.1003549

The Gene Desert Mammary Carcinoma Susceptibility Locus Mcs1a Regulates Nr2f1 Modifying Mammary Epithelial Cell Differentiation and Proliferation
Cited by: 23
Author(s): Bart M. G. Smits, Jill D. Haag, Anna I. Rissman, Deepak Sharma, Ann Tran, Alexi A. Schoenborn, Rachael Baird, Dan S. Peiffer, David Q. Leinweber, Matthew J. Muelbl, Amanda L. Meilahn, Mark R. Eichelberg, Ning Leng, Christina Kendziorski, Maliyakal E. John, Patricia A. Powers, Caroline M. Alexander, Michael N. Gould
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pgen.1005423

SLIRP Regulates the Rate of Mitochondrial Protein Synthesis and Protects LRPPRC from Degradation
Cited by: 74
Author(s): Marie Lagouge, Arnaud Mourier, Hyun Ju Lee, Henrik Spåhr, Timothy Wai, Christian Kukat, Eduardo Silva Ramos, Elisa Motori, Jakob D. Busch, Stefan J. Siira, Elisabeth Kremmer, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pntd.0003446

Conservation and Immunogenicity of Novel Antigens in Diverse Isolates of Enterotoxigenic Escherichia coli
Cited by: 60
Author(s): Qingwei Luo, Firdausi Qadri, Rita G. Kansal, David A. Rasko, Alaullah Sheikh, James M. Fleckenstein
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pntd.0004180

Changes in the Proteome of Langat-Infected Ixodes scapularis ISE6 Cells: Metabolic Pathways Associated with Flavivirus Infection
Cited by: 40
Author(s): Jeffrey M. Grabowski, Rushika Perera, Ali M. Roumani, Victoria Hedrick, Halina D. Inerowicz, Catherine A. Hill, Richard Kühn
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0054684

Genome-Wide Association Study on the Development of Cross-Reactive Neutralizing Antibodies in HIV-1 Infected Individuals
Cited by: 21
Author(s): Zelda Euler, Marit J. van Gils, Brigitte Boeser‐Nunnink, Hanneke Schuitemaker, Daniëlle van Manen
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0239971

Culture-dependent and -independent investigations of bacterial migration into doenjang from its components meju and solar salt
Cited by: 6
Author(s): Jungmin Lee, Seongkook Heo, Yoon-Su Kim, Jong Hoon Lee, Do‐Won Jeong
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0076376

Cultivation and Complete Genome Sequencing of Gloeobacter kilaueensis sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai'i
Cited by: 72
Author(s): Jimmy H. Saw, Michael C. Schatz, Mark V. Brown, Dennis D. Kunkel, Jamie S. Foster, H. Shick, Stephanie Christensen, Shaobin Hou, Xuehua Wan, Stuart P. Donachie
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0104560

Ontogeny of Hepatic Energy Metabolism Genes in Mice as Revealed by RNA-Sequencing
Cited by: 15
Author(s): Helen J. Renaud, Yue Cui, Hong Lü, Xiao‐bo Zhong, Curtis D. Klaassen
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0128272

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils
Cited by: 143
Author(s): Franck Stefani, Terrence H. Bell, Charlotte Marchand, Ivan E. de la Providencia, Abdel El Yassimi, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0184102

Epicuticular chemistry reinforces the new taxonomic classification of the Bactrocera dorsalis species complex (Diptera: Tephritidae, Dacinae)
Cited by: 10
Author(s): Lucie Vaníčková, Radka Nagy, Antonio Pompeiano, Blanka Kalinová
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0096014

Genome-Wide Analysis of the bZIP Transcription Factors in Cucumber
Cited by: 159
Author(s): Mehmet Cengiz Baloğlu, Vahap Eldem, Mortaza Hajyzadeh, Turgay Ünver
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0205292

Elevated cytokine levels in vitreous as biomarkers of disease severity in infectious endophthalmitis
Cited by: 28
Author(s): Dhanshree Deshmukh, Moumita Chakrabarti, Rajagopalaboopathi Jayasudha, Mohammed Ali, Mudit Tyagi, Savitri Sharma, Joveeta Joseph
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0175417

Caste-, sex-, and age-dependent expression of immune-related genes in a Japanese subterranean termite, Reticulitermes speratus
Cited by: 31
Author(s): Yuki Mitaka, Keiko Kobayashi, Kenji Matsuura
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0245534

Gut microbiome dysbiosis and correlation with blood biomarkers in active-tuberculosis in endemic setting
Cited by: 12
Author(s): Aasia Khaliq, Resmi Ravindran, Samia Afzal, Prasant Kumar Jena, Muhammad Akhtar, Atiqa Ambreen, Yu Wan, K. A. Malik, Muhammad Irfan, Imran Khan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0122304

Redox-Specialized Bacterioplankton Metacommunity in a Temperate Estuary
Cited by: 10
Author(s): Peeter Laas, Jaak Simm, Inga Lips, Urmas Lips, Veljo Kisand, Madis Metsis
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0137762

Using Co-Expression Analysis and Stress-Based Screens to Uncover Arabidopsis Peroxisomal Proteins Involved in Drought Response
Cited by: 27
Author(s): Jiying Li, Jianping Hu
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0131686

Transcriptional Response in Mouse Thyroid Tissue after 211At Administration: Effects of Absorbed Dose, Initial Dose-Rate and Time after Administration
Cited by: 11
Author(s): Nils Rudqvist, Johan Spetz, Emil Schüler, Toshima Z. Parris, Britta Langen, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0242125

Unmet clinical needs for COVID-19 tests in UK health and social care settings
Cited by: 5
Author(s): Sara Graziadio, Samuel Urwin, Paola Cocco, Massimo Micocci, Amanda Winter, Yaling Yang, David Ashley Price, Mike Messenger, Joy Allen, Bethany Shinkins
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0129318

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane
Cited by: 81
Author(s): Lucas Mitsuo Taniguti, Patrícia Dayane Carvalho Schaker, Juliana Benevenuto, Leila Priscila Peters, Gabriela Ferreira Carvalho, Aristides Palhares, Maria Carolina Quecine, Filipe R. S. Nunes, Maria Carolina Pezzo Kmit, Alvan Wai, Georg Hausner, Karen S. Aitken, Paul J. Berkman, James A. Fraser, Paula Moolhuijzen, Luiz Lehmann Coutinho, Silvana Creste, Maria Lúcia Carneiro Vieira, João Paulo Kitajima, Cláudia Barros Monteiro-Vitorello
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0097690

Altered Expression of Circulating MicroRNA in Plasma of Patients with Primary Osteoarthritis and In Silico Analysis of Their Pathways
Cited by: 83
Author(s): Verónica M. Borgonio Cuadra, Norma Celia González-Huerta, Sandra Romero-Córdoba, Alfredo Hidalgo-Miranda, Antonio Miranda‐Duarte
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0169670

Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics
Cited by: 50
Author(s): Scott L. Hamilton, Cheryl A. Logan, Hamilton William Fennie, Susan M. Sogard, James Barry, April D. Makukhov, Lauren R. Tobosa, Kirsten Boyer, C. Lovera, Giacomo Bernardi
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0054732

The Carcinogenic Liver Fluke, Clonorchis sinensis: New Assembly, Reannotation and Analysis of the Genome and Characterization of Tissue Transcriptomes
Cited by: 71
Author(s): Yan Huang, Wenjun Chen, Xiaoyun Wang, Hailiang Liu, Yangyi Chen, Lei Guo, Fang Luo, Jiufeng Sun, Qiang Mao, Pei Liang, Zhizhi Xie, Chenhui Zhou, Yanli Tian, Xiaoli Lv, Lisha Huang, Juanjuan Zhou, Yue Hu, Ran Li, Fan Zhang, Huali Lei, Wenfang Li, Xuchu Hu, Chi Liang, Jin Xu, Xuerong Li, Xinbing Yu
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0190199

Combined oral and topical antimicrobial therapy for male partners of women with bacterial vaginosis: Acceptability, tolerability and impact on the genital microbiota of couples - A pilot study
Cited by: 40
Author(s): Erica L Plummer, Lenka A Vodstrcil, Jennifer Danielewski, Gerald L Murray, Christopher K. Fairley, Suzanne M. Garland, Jane S Hocking, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0063251

Gene Expression Changes in the Colon Epithelium Are Similar to Those of Intact Colon during Late Inflammation in Interleukin-10 Gene Deficient Mice
Cited by: 9
Author(s): Anna E Russ, J. S. Peters, Warren C. McNabb, Matthew P. G. Barnett, Rachel C. Anderson, Zaneta Park, Shuotun Zhu, Paul Maclean, Wayne Young, Gordon Reynolds, Nicole C. Roy
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0164735

Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens
Cited by: 34
Author(s): Bruno Tilocca, Maren Witzig, M. Rodehutscord, Jana Seifert
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0120106

Potential Biomarkers of Fatigue Identified by Plasma Metabolome Analysis in Rats
Cited by: 39
Author(s): Satoshi Kume, Masayuki Yamato, Yasuhisa Tamura, Guanghua Jin, Masayuki Nakano, Yukiharu Miyashige, Akiyo Eguchi, Yasuhiro Ogata, Nobuhito Goda, Kazuhiro Iwaï, Emi Yamano, Yasuyoshi Watanabe, Tomoyoshi Soga, Yosky Kataoka
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0069790

Identification of Novel Adhesins of M. tuberculosis H37Rv Using Integrated Approach of Multiple Computational Algorithms and Experimental Analysis
Cited by: 26
Author(s): Sanjiv Kumar, Bhanwar Lal Puniya, Shahila Parween, Pradip Nahar, Srinivasan Ramachandran
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0046202

Influence of the Male Ejaculate on Post-Mating Prezygotic Barriers in Field Crickets
Cited by: 22
Author(s): Erica L. Larson, José Á. Andrés, Richard G. Harrison
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0039621

A Daphnane Diterpenoid Isolated from Wikstroemia polyantha Induces an Inflammatory Response and Modulates miRNA Activity
Cited by: 9
Author(s): Anthony Khong, Roberto Forestieri, David E. Williams, Brian O. Patrick, Andrea D. Olmstead, Victoria Svinti, Emily K. Schaeffer, François Jean, Michel Roberge, Raymond J. Andersen, Eric Jan
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0124969

Transcriptional and Phenotypic Characterization of Novel Spx-Regulated Genes in Streptococcus mutans
Cited by: 28
Author(s): Lívia C. C. Galvão, James H. Miller, Jessica K. Kajfasz, Kathy Scott-Anne, Irlan Almeida Freires, Gilson César Nobre Franco, Jacqueline Abranches, Pedro Luiz Rosalen, José A. Lemos
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0208352

Characterization of longitudinal canal tissue in the acorn barnacle Amphibalanus amphitrite
Cited by: 8
Author(s): Chenyue Wang, Janna N. Schultzhaus, Chris R. Taitt, Dagmar H. Leary, Lisa C. Shriver‐Lake, Daniel A. Snellings, Samantha L Sturiale, Stella H. North, Beatriz Orihuela, Daniel Rittschof, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0089680

A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
Cited by: 1,029
Author(s): Francesca De Filippis, Antonietta La Storia, Giuseppina Stellato, Monica Gatti
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0240612

Study of the differentially abundant proteins among Leishmania amazonensis, L. braziliensis, and L. infantum
Cited by: 1
Author(s): Bruna Soares de Souza Lima, Barbara Beiral Esteves, Luiz Carlos Fialho-Júnior, Tiago Antônio de Oliveira Mendes, Simone da Fonseca Pires, Alexander Chapeourouge, Jonás Perales, Hélida Monteiro de Andrade
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0179652

Contrasting bacterial communities in two indigenous Chionochloa (Poaceae) grassland soils in New Zealand
Cited by: 14
Author(s): Jocelyn Chua Griffith, William G. Lee, David A. Orlovich, Tina C. Summerfield
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0111581

MiRNA Expression May Account for Chronic but Not for Acute Regulation of mRNA Expression in Human Thyroid Tumor Models
Cited by: 9
Author(s): Sébastien Floor, Aline Hébrant, Jaime Miguel Gomes Pita, Manuel Saiselet, Christophe Trésallet, Frédérick Libert, Guy Andry, Jacques Emile Dumont, Wilma Van Staveren, Carine Maenhaut
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0097338

Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses
Cited by: 18
Author(s): Ari J. S. Ferreira, Rania Siam, João Carlos Setúbal, Ahmed Moustafa, Ahmed A. Sayed, Felipe S. Chambergo, Adam Dawe, Mohamed A. Ghazy, Hazem Sharaf, Amged Ouf, Intikhab Álam, Alyaa M. Abdel-Haleem, Heikki Lehväslaiho, Eman Ramadan, André Antunes, Ulrich Stingl, John Archer, Boris R. Janković, Mitchell L. Sogin, Vladimir B. Bajic, Hamza A. El-Dorry
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0160574

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Cited by: 15
Author(s): Michelle Davison, Todd J. Treangen, Sergey Koren, Mihai Pop, Devaki Bhaya
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0231049

Zika virus infection differentially affects genome-wide transcription in neuronal cells and myeloid dendritic cells
Cited by: 7
Author(s): Tamina Park, Myung-Gyun Kang, Seung‐Hwa Baek, Chang Hoon Lee, Daeui Park
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0086569

Ion Channel Gene Expression in Lung Adenocarcinoma: Potential Role in Prognosis and Diagnosis
Cited by: 31
Author(s): Jae Hong Ko, Wanjun Gu, Inja Lim, Hyoweon Bang, Eun A. Ko, Tong Zhou
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0203953

Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA
Cited by: 18
Author(s): Tomofumi Kurobe, Peggy W. Lehman, Bruce G. Hammock, Melissa B. Bolotaolo, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0049130

Genome-Wide Expression Analysis in Down Syndrome: Insight into Immunodeficiency
Cited by: 12
Author(s): Chong Li, Lan Jin, Yun Bai, Qimin Chen, Lei Fu, Minjun Yang, Huasheng Xiao, Guoping Zhao, Shengyue Wang
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0060321

Biological Characteristics and Genetic Heterogeneity between Carcinoma-Associated Fibroblasts and Their Paired Normal Fibroblasts in Human Breast Cancer
Cited by: 67
Author(s): Qiongle Peng, Liuyang Zhao, Yixuan Hou, Yan Sun, Liyang Wang, Haojun Luo, Huimin Peng, Manran Liu
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0039786

Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays
Cited by: 74
Author(s): Zhijie Liu, Sunita Kumari, Lifang Zhang, Yanyan Zheng, Doreen Ware
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0148726

Transcriptome Analysis of Chemically-Induced Sensory Neuron Ablation in Zebrafish
Cited by: 5
Author(s): Jane A. Cox, Bo Zhang, Holly M. Pope, Mark M. Voigt
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0180385

Autoimmunity and allergy control in adults submitted to complete thymectomy early in infancy
Cited by: 13
Author(s): Susana L. Silva, Adriana S. Albuquerque, Andreia J. Amaral, Quan Zhen Li, Catarina Mota, Rémi Cheynier, Rui M. M. Victorino, Maria Conceição Pereira-Santos, Ana E. Sousa
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0029596

Trypanosoma cruzi Gene Expression in Response to Gamma Radiation
Cited by: 14
Author(s): Priscila Grynberg, Danielle Gomes Passos‐Silva, Marina Moraes Mourão, Roberto Hirata, Andréa Mara Macedo, Carlos Renato Machado, Daniella Castanheira Bartholomeu, Glória Regina Franco
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0093258

RNA Sequence Reveals Mouse Retinal Transcriptome Changes Early after Axonal Injury
Cited by: 65
Author(s): Masayuki Yasuda, Yuji Tanaka, Morin Ryu, S. Tsuda, Toru Nakazawa
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0181427

Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change
Cited by: 51
Author(s): Cheng-Yu Chen, Po‐Cheng Chen, Francis Cheng-Hsuan Weng, Grace Tzun-Wen Shaw, Daryi Wang
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0239998

Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species
Cited by: 10
Author(s): Tyler C. Helmann, Adam M. Deutschbauer, Steven E. Lindow
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0025584

An Integrated Transcriptomic and Meta-Analysis of Hepatoma Cells Reveals Factors That Influence Susceptibility to HCV Infection
Cited by: 19
Author(s): Jamie MacPherson, Ben S. Sidders, Stefan Wieland, Jin Zhong, Paul Targett-Adams, Volker Lohmann, Perdita Backes, Oona E Delpuech-Adams, Francis V. Chisari, Marilyn Lewis, Tanya Parkinson, David L. Robertson
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0051075

Bacterial Indicator of Agricultural Management for Soil under No-Till Crop Production
Cited by: 75
Author(s): Eva Lucía Margarita Figuerola, Leandro D. Guerrero, Silvina Mariana Rosa, Leandro Simonetti, Matías Ezequiel Duval, Juán Alberto Galantini, José Camilo Bedano, Luis Gabriel Wall, Leonardo Erijman
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0103115

Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing
Cited by: 54
Author(s): Yangfan Deng, Xiaoyong Cui, Marcela Hernández, Marc G. Dumont
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0227243

Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress
Cited by: 21
Author(s): Lingling Lv, Kaiye Yu, Haiyan Lü, Xiangqian Zhang, Xiaoqian Liu, Chongyuan Sun, Huanqing Xu, Jinyu Zhang, Xiaohong He, Dan Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0128872

Multi-Pathway Cellular Analysis on Crude Natural Drugs/Herbs from Japanese Kampo Formulations
Cited by: 1
Author(s): Shizuka Eshima, Satoru Yokoyama, Takashi Abe, Yoshihiro Hayakawa, Ikuo Saiki
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0088584

Effect of Diet on Expression of Genes Involved in Lipid Metabolism, Oxidative Stress, and Inflammation in Mouse Liver–Insights into Mechanisms of Hepatic Steatosis
Cited by: 73
Author(s): Helen J. Renaud, Julia Yue Cui, Hong Lü, Curtis D. Klaassen
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0197911

Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue
Cited by: 5
Author(s): Britta Langen, Nils Rudqvist, Johan Spetz, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0190960

A systematic approach to analyze the social determinants of cardiovascular disease
Cited by: 23
Author(s): Mireya Martínez-García, Magaly Salinas-Ortega, Iván Estrada-Arriaga, Enrique Hernández‐Lemus, Rodrigo García-Herrera, Maité Vallejo
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0174411

The rhizospheric microbial community structure and diversity of deciduous and evergreen forests in Taihu Lake area, China
Cited by: 39
Author(s): Zhiwen Wei, Xiaolong Hu, Xunhang Li, Yanzhou Zhang, Leichun Jiang, Jing Li, Guan Zhang, Yujie Cai, Xiangru Liao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0245855

Transcriptomic analysis reveals key transcription factors associated to drought tolerance in a wild papaya (Carica papaya) genotype
Cited by: 9
Author(s): Humberto Estrella‐Maldonado, Amaranta Girón Ramírez, Gabriela Fuentes Ortíz, Santy Peraza-Echeverría, Octavio Martínez-de la Vega, Elsa Góngora-Castillo, Jorge M. Santamaría
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0160577

Diurnal Variations of Human Circulating Cell-Free Micro-RNA
Cited by: 42
Author(s): Niels H. H. Heegaard, Anting Liu Carlsen, Berit Lilje, Kim Lee Ng, Birte Svensson, Henrik L. Jørgensen, Henriette P Sennels, Jan Fahrenkrug
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0171797

Transcriptional response to 131I exposure of rat thyroid gland
Cited by: 10
Author(s): Nils Rudqvist, Johan Spetz, Emil Schüler, Toshima Z. Parris, Britta Langen, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0065347

Impact of Oil on Bacterial Community Structure in Bioturbated Sediments
Cited by: 61
Author(s): Magalie Stauffert, Cristiana Cravo‐Laureau, Ronan Jézéquel, Sandra Barantal, Philippe Cuny, Franck Gilbert, Christine Cagnon, Cécile Militon, David Amouroux, Fatima Mahdaoui, Brice Bouyssière, Georges Stora, François-Xavier Merlin, Robert Duran
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0135565

Temporal Gene Expression of the Cyanobacterium Arthrospira in Response to Gamma Rays
Cited by: 10
Author(s): Hanène Badri, Pieter Monsieurs, Ilse Coninx, Robin Nauts, Ruddy Wattiez, Natalie Leys
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0233729

Plant life at the dry limit—Spatial patterns of floristic diversity and composition around the hyperarid core of the Atacama Desert
Cited by: 15
Author(s): Jonathan Ruhm, Tim Böhnert, Maximilian Weigend, Félix F. Merklinger, Alexandra Stoll, Dietmar Quandt, Federico Luebert
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0186440

Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium
Cited by: 13
Author(s): Roberto Orellana, Gina Chaput, Lye Meng Markillie, Hugh D. Mitchell, Matt Gaffrey, Galya Orr, Kristen M. DeAngelis
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0096333

Profiling of Olfactory Receptor Gene Expression in Whole Human Olfactory Mucosa
Cited by: 103
Author(s): Christophe Verbeurgt, Françoise Wilkin, Maxime Tarabichi, Françoise Grégoire, Jacques Emile Dumont, Pierre Chatelain
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0074599

Specific Extracellular Matrix Remodeling Signature of Colon Hepatic Metastases
Cited by: 42
Author(s): Maguy Del Rio, Caroline Mollévi, Nadia Vezzio-Vié, Fréderic Bibeau, Marc Ychou, Pierre Martineau
Software Mentions: 2
Published: almost 13 years ago

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