cran: gplots | Projects | Ecosyste.ms: Papers

10.1042/BSR20204171

<i>Ddhd1</i> knockout mouse as a model of locomotive and physiological abnormality in familial spastic paraplegia
Cited by: 2
Author(s): Takuya Morikawa, Hiroaki Ohishi, Kengo Kosaka, Tomofumi Shimojo, Akihiro Nagano, Itsuki Taniguchi, Ryuta Fujioka, Kousuke Moriyama, Motoko Unoki, Masatomo Takahashi, Motonao Nakao, Yoshihiro Izumi, Takeshi Bamba, Hidetada Sasaki, Satoshi Miura, Hiroki Shibata
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20191554

Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA–miRNA–mRNA networks and Cox regression models
Cited by: 14
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Wei Hua Jia, Qi Song, Changgang Sun
Software Mentions: 2
Published: almost 7 years ago

10.1002/advs.202003049

Modeling Heterogeneity of Triple‐Negative Breast Cancer Uncovers a Novel Combinatorial Treatment Overcoming Primary Drug Resistance
Cited by: 11
Author(s): Fabienne Lamballe, Fahmida Ahmad, Yaron Vinik, Olivier Castellanet, Fabrice Daian, Anna Katharina Müller, Ulrike A. Köhler, Anne Laure Bailly, Emmanuelle Josselin, Rémy Castellano, Christelle Cayrou, Emmanuelle Charafe‐Jauffret, Gordon B. Mills, Vincent Géli, Jean-Paul Borg, Sima Lev, Flavio Maina
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41419-020-2464-6

DNA:RNA hybrids form at DNA double-strand breaks in transcriptionally active loci
Cited by: 32
Author(s): Aldo S. Bader, Martin Bushell
Software Mentions: 2
Published: over 6 years ago

10.1038/cddis.2014.566

Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma
Cited by: 181
Author(s): Eric A. Singer, Jonathon Judkins, Nathan Salomonis, Lisa Matlaf, Patricia Soteropoulos, Sean D. McAllister, Liliana Soroceanu
Software Mentions: 2
Published: almost 12 years ago

10.7554/eLife.38883

Hair follicle epidermal stem cells define a niche for tactile sensation
Cited by: 34
Author(s): Chun‐Chia Cheng, Ko Tsutsui, Toru Taguchi, Noriko Sanzen, Asako Nakagawa, Kisa Kakiguchi, Shigenobu Yonemura, Chiharu Tanegashima, Sean D. Keeley, Hiroshi Kanazawa, Yasuhide Furuta, Yasuko Tomono, Fiona M. Watt, Hironobu Fujiwara
Software Mentions: 2
Published: about 8 years ago

10.1111/cpr.13059

Genome stabilization by RAD51‐stimulatory compound 1 enhances efficiency of somatic cell nuclear transfer‐mediated reprogramming and full‐term development of cloned mouse embryos
Cited by: 6
Author(s): Ah Reum Lee, Jihoon Park, Sung Han Shim, Kwonho Hong, Hyeonwoo La, Kyung-Soon Park, Dong Ryul Lee
Software Mentions: 2
Published: over 5 years ago

10.1016/j.stem.2018.01.020

Macrophage-Derived Extracellular Succinate Licenses Neural Stem Cells to Suppress Chronic Neuroinflammation
Cited by: 189
Author(s): Luca Peruzzotti‐Jametti, Joshua D. Bernstock, Nunzio Vicario, Ana S.H. Costa, Chee Keong Kwok, Tommaso Leonardi, Lee M. Booty, Iacopo Bicci, Beatrice Balzarotti, Giulio Volpe, Giulia Mallucci, Giulia Manferrari, Matteo Donegà, Nunzio Iraci, Alice Braga, John M. Hallenbeck, Michael P. Murphy, Frank Edenhofer, Christian Frezza, Stefano Pluchino
Software Mentions: 2
Published: over 8 years ago

10.1155/2020/3268505

The Role of Overexpressed Apolipoprotein AV in Insulin-Resistant Hepatocytes
Cited by: 0
Author(s): Wang Zhao, Yaqiong Liu, Xiao‐Bo Liao, Shui‐Ping Zhao
Software Mentions: 2
Published: over 6 years ago

10.1128/mBio.01307-18

An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila
Cited by: 25
Author(s): Lori R. Shapiro, Joseph N. Paulson, Brian J. Arnold, Erin D. Scully, Olga Zhaxybayeva, Naomi E. Pierce, Jorge Rocha, Vanja Klepac‐Ceraj, Kristina M. Holton, Roberto Kolter
Software Mentions: 2
Published: about 8 years ago

10.1016/j.cels.2018.02.001

Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes
Cited by: 64
Author(s): Spencer S. Watson, Mark Dane, Koei Chin, Zuzana Tatárová, Moqing Liu, Tiera Liby, Wallace Thompson, Rebecca Smith, Michel Nederlof, Elmar Bucher, David Kilburn, Matthew A. Whitman, Damir Sudar, Gordon B. Mills, Laura M. Heiser, Oliver Jonas, Joe W. Gray, James E. Korkola
Software Mentions: 2
Published: over 8 years ago

10.3390/cells8090951

Synergy of NUP98-HOXA10 Fusion Gene and NrasG12D Mutation Preserves the Stemness of Hematopoietic Stem Cells on Culture Condition
Cited by: 5
Author(s): Yong Dong, Chengxiang Xia, Qitong Weng, Tongjie Wang, Fang Hu, Kaitao Wang, Xiaofei Liu, Geng Yang, Lijuan Liu, Hongling Wu, Juan Du
Software Mentions: 2
Published: about 7 years ago

10.3390/biology10080782

Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Cited by: 105
Author(s): Zaki Saati‐Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 5 years ago

10.1186/s13148-015-0047-7

Identification of novel long non-coding RNAs in clear cell renal cell carcinoma
Cited by: 73
Author(s): Jasmine Jc Blondeau, Mario C. Deng, Isabella Syring, Sarah Schrödter, Doris Schmidt, Sven Perner, Stefan Müller, Jörg Ellinger
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13148-020-00907-4

Genome-wide methylation patterns predict clinical benefit of immunotherapy in lung cancer
Cited by: 45
Author(s): Jeong Yeon Kim, Jung Kyoon Choi, Hyunchul Jung
Software Mentions: 2
Published: over 6 years ago

10.3390/biology8020021

Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
Cited by: 1
Author(s): Waraporn Kraitavin, Kazutoshi Yoshitake, Yoji Igarashi, Susumu Mitsuyama, Shigeharu Kinoshita, Daisuke Kambayashi, Shugo Watabe, Shuichi Asakawa
Software Mentions: 2
Published: over 7 years ago

10.1186/s40659-020-00299-y

Microarray profiling and functional analysis of differentially expressed plasma exosomal circular RNAs in Graves’ disease
Cited by: 16
Author(s): Ying Sun, Wei Wang, Yuxiao Tang, Daping Wang, Liang Li, Na Min, Guantong Jiang, Qian Li, Shulin Chen, Jin Zhou
Software Mentions: 2
Published: over 6 years ago

10.1186/s13148-020-00910-9

Gene co-expression and histone modification signatures are associated with melanoma progression, epithelial-to-mesenchymal transition, and metastasis
Cited by: 7
Author(s): Hátylas Azevedo, Guilherme Cavalcante Pessoa, Francisca Nathália de Luna Vitorino, Jérémie Nsengimana, Julia Newton-Bishop, Eduardo M. Reis, Júlia Pinheiro Chagas da Cunha, Miriam Galvonas Jasiulionis
Software Mentions: 2
Published: about 6 years ago

10.1186/s13148-017-0314-x

Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India
Cited by: 37
Author(s): Baidehi Basu, Joyeeta Chakraborty, Aditi Chandra, Atul Katarkar, Jadav Ritesh Kumar Baldevbhai, Debjit Dhar Chowdhury, Jharna Ray, Keya Chaudhuri, Raghunath Chatterjee
Software Mentions: 2
Published: almost 10 years ago

10.1007/s00592-017-1059-x

Pancreatic imaging using an antibody fragment targeting the zinc transporter type 8: a direct comparison with radio-iodinated Exendin-4
Cited by: 10
Author(s): Olof Eriksson, Olle Korsgren, Ram Kumar Selvaraju, Marjorie Mollaret, Yann de Boysson, Fabrice Chimienti, Mohamed Altai
Software Mentions: 2
Published: about 9 years ago

10.1186/1752-0509-5-202

A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections
Cited by: 18
Author(s): Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12918-015-0159-x

Genome-scale resources for Thermoanaerobacterium saccharolyticum
Cited by: 22
Author(s): Devin H. Currie, Babu Raman, Christopher M. Gowen, Timothy J. Tschaplinski, Miriam Land, Steven D. Brown, Sean F. Covalla, Dawn M. Klingeman, Zamin K. Yang, Nancy L. Engle, C. M. Johnson, Miguel Rodríguez, Aubie Shaw, William R. Kenealy, Lee R. Lynd, Stephen S. Fong, Jonathan R. Mielenz, Brian H. Davison, David A. Hogsett, Christopher D. Herring
Software Mentions: 2
Published: over 11 years ago

10.1186/s12918-018-0639-x

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain
Cited by: 24
Author(s): Steven Cogill, Anand Srivastava, Mary Qu Yang, Liangjiang Wang
Software Mentions: 2
Published: almost 8 years ago

10.1186/1756-0500-7-761

Expression level of a flavonoid 3′-hydroxylase gene determines pathogen-induced color variation in sorghum
Cited by: 20
Author(s): Hiroshi Mizuno, Takayuki Yazawa, Shigemitsu Kasuga, Yuji Sawada, Jun Ogata, Tsuyu Ando, Hajime Kanamori, Jun‐ichi Yonemaru, Jianzhong Wu, Masami Yokota Hirai, Takashi Matsumoto, Hiroyuki Kawahigashi
Software Mentions: 2
Published: about 12 years ago

10.1007/s00294-016-0642-y

A conserved role of the RSC chromatin remodeler in the establishment of nucleosome-depleted regions
Cited by: 11
Author(s): Carlo Yague-Sanz, Enrique Vázquez, Mar Sánchez, Francisco Antequera, Damien Hermand
Software Mentions: 2
Published: about 10 years ago

10.1186/1756-0500-7-440

Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: over 12 years ago

10.1016/j.devcel.2012.01.005

Cell-Surface Proteomics Identifies Lineage-Specific Markers of Embryo-Derived Stem Cells
Cited by: 132
Author(s): Peter J. Rugg‐Gunn, Brian Cox, Fredrik Lanner, Parveen Sharma, Vladimir Ignatchenko, Angela McDonald, Jodi Garner, Anthony O. Gramolini, Janet Rossant, Thomas Kislinger
Software Mentions: 2
Published: over 14 years ago

10.1242/dev.125450

Constraint of gene expression by chromatin remodelling protein CHD4 facilitates lineage specification
Cited by: 43
Author(s): Aoife O’Shaughnessy-Kirwan, Jason Signolet, Ita Costello, Sarah Gharbi, Brian Hendrich
Software Mentions: 2
Published: almost 12 years ago

10.3389/fimmu.2019.00542

Discrepancies in the Tumor Microenvironment of Spontaneous and Orthotopic Murine Models of Pancreatic Cancer Uncover a New Immunostimulatory Phenotype for B Cells
Cited by: 56
Author(s): Sarah Spear, Juliana Candido, Jacqueline McDermott, Cristina Ghirelli, Eleni Maniati, Stephen A. Beers, Frances R. Balkwill, Hemant M. Kocher, Melania Capasso
Software Mentions: 2
Published: over 7 years ago

10.1186/s13104-015-1017-z

BMX: a tool for computing bacterial phyletic composition from orthologous maps
Cited by: 8
Author(s): Benard W. Kulohoma
Software Mentions: 2
Published: almost 12 years ago

10.3389/fimmu.2018.02458

Absence of Regulatory T Cells Causes Phenotypic and Functional Switch in Murine Peritoneal Macrophages
Cited by: 15
Author(s): Jelena Škuljec, Adan Chari Jirmo, Anika Habener, Steven R. Talbot, Refik Pul, Ruth Grychtol, Malik Aydin, Christoph Kleinschnitz, Christine Happle, Gesine Hansen
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2021.643441

Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.637659

Activation of Toll-Like Receptor 7 Signaling Pathway in Primary Sjögren's Syndrome-Associated Thrombocytopenia
Cited by: 10
Author(s): Shuo Zhang, Jingge Qu, Li Wang, Mengtao Li, Dong Xu, Yan Zhao, Fengchun Zhang, Xiaofeng Zeng
Software Mentions: 2
Published: over 5 years ago

10.3390/ani10030534

A Novel Therapeutic Reagent, KA-1002 for Alleviating Lysophosphatidic Acid-Mediated Inflammation Related Gene Expression in Swine Macrophages
Cited by: 0
Author(s): Hyeon-Jeong Hwang, Tamina Park, Miok Kim, Hee-Su Shin, Woo-Yeon Hwang, Yong Ki Min, Sukgil Song, Daeui Park, Chang Hoon Lee
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-021-02969-9

The physiological and molecular mechanisms of N transfer in Eucalyptus and Dalbergia odorifera intercropping systems using root proteomics
Cited by: 6
Author(s): Xianyu Yao, Lusheng Liao, Yongzhen Huang, Ge Fan, Mei Yang, Shaoming Ye
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.633201

Serum miRNA Signature in Rheumatoid Arthritis and “At-Risk Individuals”
Cited by: 32
Author(s): C Cunningham, Siobhan Wade, Achilleas Floudas, Carl Orr, Trudy McGarry, Siobhan Wade, Sian Cregan, Ursula Fearon, Douglas J. Veale
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.00516

Bioinformatics Analyses Determined the Distinct CNS and Peripheral Surrogate Biomarker Candidates Between Two Mouse Models for Progressive Multiple Sclerosis
Cited by: 11
Author(s): Seiichi Omura, Fumitaka Sato, Nicholas E. Martinez, Ah-Mee Park, Mitsugu Fujita, Nikki J. Kennett, Urška Cvek, Alireza Minagar, J. Steven Alexander, Ikuo Tsunoda
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2016.00381

Impact of Enriched Environment on Murine T Cell Differentiation and Gene Expression Profile
Cited by: 15
Author(s): Lorenza Rattazzi, Giuseppa Piras, Samuel Brod, Koval Smith, M. Ono, Fulvio D’Acquisto
Software Mentions: 2
Published: about 10 years ago

10.3389/fmed.2020.00112

Single-Cell Transcriptional Profiling of Cells Derived From Regenerating Alveolar Ducts
Cited by: 3
Author(s): Alexandra B. Ysasi, Robert D. Bennett, Willi L. Wagner, Cristian D. Valenzuela, Andrew B. Servais, Akira Tsuda, Saumyadipta Pyne, Shuqiang Li, Jonna Grimsby, Prapti Pokharel, Kenneth J. Livak, Maximilian Ackermann, Paul C. Blainey, Steven J. Mentzer
Software Mentions: 2
Published: over 6 years ago

10.3389/fmed.2021.704328

Effects of Previous Kasai Surgery on Gut Microbiota and Bile Acid in Biliary Atresia With End-Stage Liver Disease
Cited by: 2
Author(s): Wei Song, Li‐Ying Sun, Zhi‐Jun Zhu
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.01578

Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc
Cited by: 18
Author(s): Kyle R. Hager, Heather Fullerton, D. A. Butterfield, Craig L. Moyer
Software Mentions: 2
Published: about 9 years ago

10.1186/s12870-016-0880-7

A fast and simple LC-MS-based characterization of the flavonoid biosynthesis pathway for few seed(ling)s
Cited by: 11
Author(s): Benjamin Jaegle, M. Kalle Uroic, Xu Holtkotte, Christina Lucas, Andreas Ole Termath, Hans‐Günther Schmalz, Marcel Bucher, Ute Hoecker, Martin Hülskamp, Andrea Schrader
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2021.653283

Illumina Sequencing and Metabolomics Analysis Reveal Thiamine Modulation of Ruminal Microbiota and Metabolome Characteristics in Goats Fed a High-Concentrate Diet
Cited by: 15
Author(s): Yuxiang Ma, Chao Wang, Hao Zhang, Lihuai Yu, Dong Li, Daoqing Gong, Junhu Yao, Hongrong Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-014-0281-8

Non-specific lipid transfer proteins in maize
Cited by: 68
Author(s): Kaifa Wei, Xiaojun Zhong
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2018.00226

Impervious Surfaces Alter Soil Bacterial Communities in Urban Areas: A Case Study in Beijing, China
Cited by: 28
Author(s): Yinhong Hu, Xiaohui Dou, Juanyong Li, Feng Li
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2013.00342

Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments
Cited by: 44
Author(s): Jennifer L. Bowen, Jarrett E. K. Byrnes, David Weisman, Cory Colaneri
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2012.00441

Eukaryotic diversity at pH extremes
Cited by: 40
Author(s): Linda Amaral‐Zettler
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2020.01635

DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance
Cited by: 11
Author(s): Muntasir Ali, Ann Provoost, Kristel Mijnendonckx, Rob Van Houdt, Daniël Charlier
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00761-19

Dominance of Gas-Eating, Biofilm-Forming Methylobacterium Species in the Evaporator Cores of Automobile Air-Conditioning Systems
Cited by: 2
Author(s): Chulwoo Park, Hye Su Jung, Tae Sun Park, Che Ok Jeon, Woojun Park
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02100

How Management Practices Within a Poultry House During Successive Flock Rotations Change the Structure of the Soil Microbiome
Cited by: 13
Author(s): Tawni L. Crippen, Cynthia L. Sheffield, Baneshwar Singh, J. A. Byrd, Ross C. Beier
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-018-1529-5

Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat
Cited by: 56
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-017-1068-5

Ambient temperature and genotype differentially affect developmental and phenotypic plasticity in Arabidopsis thaliana
Cited by: 64
Author(s): Carla Ibáñez, Yvonne Poeschl, Tom Peterson, Julia Bellstädt, Kathrin Denk, Andreas Gogol-Döring, Marcel Quint, Carolin Delker
Software Mentions: 2
Published: over 9 years ago

10.1128/mSystems.00052-16

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Cited by: 186
Author(s): Aaron M. Walsh, Fiona Crispie, Kieran N. Kilcawley, Órla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2019.01474

Comparative Transcriptome Profiling of Gaeumannomyces graminis var. tritici in Wheat Roots in the Absence and Presence of Biocontrol Bacillus velezensis CC09
Cited by: 10
Author(s): Xingxing Kang, Yu Guo, Shuai Leng, Lei Xiao, Lanhua Wang, Yarong Xue, Changhong Liu
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00011

Nasopharyngeal Microbiota in Children With Invasive Pneumococcal Disease: Identification of Bacteria With Potential Disease-Promoting and Protective Effects
Cited by: 28
Author(s): Anny Camelo-Castillo, Desirée Henares, Pedro Brotons, Antonio Galiana, Juan Carlos Rodrı́guez, Álex Mira, Carmen Muñoz-Almagro
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2017.00202

Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4
Cited by: 69
Author(s): Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schümann, Manfred Rohde, Stefan Spring, Frank Oliver Glöckner, Christian Jogler, Mareike Jogler
Software Mentions: 2
Published: almost 10 years ago

10.1128/mSystems.00741-19

Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
Cited by: 45
Author(s): Xiaogai Wang, Run‐Cang Sun, Yinping Tian, Kai Guo, Hang Sun, Xiaojing Liu, Haiyan Chu, Binbin Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02132

Ecogenomics and Taxonomy of Cyanobacteria Phylum
Cited by: 82
Author(s): Juline M. Walter, Felipe H. Coutinho, Bas E. Dutilh, Jean Swings, Fabiano L. Thompson, Cristiane C. Thompson
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.01462

Sewage Sludge Microbial Structures and Relations to Their Sources, Treatments, and Chemical Attributes
Cited by: 98
Author(s): Andréa M. A. Nascimento, Adijailton José de Souza, Pedro Avelino Maia de Andrade, Fernando Dini Andreote, Aline Renée Coscione, Fernando Carvalho Oliveira, Jussara Borges Regitano
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00876

The Invasive Brazilian Pepper Tree (Schinus terebinthifolius) Is Colonized by a Root Microbiome Enriched With Alphaproteobacteria and Unclassified Spartobacteria
Cited by: 17
Author(s): Karim Dawkins, Nwadiuto Esiobu
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2015.01493

Recurrence and Frequency of Disturbance have Cumulative Effect on Methanotrophic Activity, Abundance, and Community Structure
Cited by: 30
Author(s): Adrian Ho, Erik van den Brink, Andreas Reim, Sascha Krause, Paul L. E. Bodelier
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2020.01519

Fungal Endophyte Communities of Crucifer Crops Are Seasonally Dynamic and Structured by Plant Identity, Plant Tissue and Environmental Factors
Cited by: 10
Author(s): Junhui Chen, Komivi Senyo Akutse, Hafiz Sohaib Ahmed Saqib, Xiaolu Wu, Fei‐Ying Yang, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-1698-x

Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
Cited by: 14
Author(s): Otávio Henrique Bezerra Pinto, Thais F. Silva, Carla Simone Vizzotto, Renata Henrique Santana, Fabyano Álvares Cardoso Lopes, Bruno Santana da Silva, Fabiano L. Thompson
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.48788

Lmx1b is required at multiple stages to build expansive serotonergic axon architectures
Cited by: 30
Author(s): Lauren J. Donovan, W. Clay Spencer, Meagan M. Kitt, Brent A Eastman, Katherine J Lobur, Kexin Jiao, Jerry Silver, Evan S. Deneris
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.00458

Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species
Cited by: 71
Author(s): Stephanie Lawler, Christina A. Kellogg, Rachel W. Clostio, Sandra Brooke, Steve W. Ross
Software Mentions: 2
Published: over 10 years ago

10.1101/2020.07.30.20165241

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection
Cited by: 16
Author(s): Niyati Desai, Azfar Neyaz, Annamária Szabolcs, Angela R. Shih, Jonathan Chen, Vishal Thapar, Linda T. Nieman, Alexander Solovyov, Arnav Mehta, David Lieb, Anupriya S. Kulkarni, Christopher Jaicks, Christopher J. Pinto, Dejan Juric, Ivan Chebib, Robert B. Colvin, Arthur Y. Kim, R. J. Monroe, Sarah Warren, Patrick Danaher, Jason Reeves, Junsong Gong, Erroll H. Rueckert, Benjamin Greenbaum, Nir Hacohen, Stephen M. Lagana, Miguel N. Rivera, Lynette M. Sholl, James R. Stone, David T. Ting
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.01973

Monocyte and Macrophage-Mediated Pathology and Protective Immunity During Schistosomiasis
Cited by: 15
Author(s): Camila Oliveira Silva Souza, Luiz Gustavo Gardinassi, Vanderlei Rodrigues, Lúcia Helena Faccioli
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00030

The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans
Cited by: 11
Author(s): Rodrigo Flores-Ríos, Ana Moya-Beltrán, Claudia Pareja-Barrueto, Mauricio Arenas-Salinas, Sebastián Valenzuela, Omar Orellana, Raquel Quatrini
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.01989

Metabolic Syndrome During Perinatal Period in Sows and the Link With Gut Microbiota and Metabolites
Cited by: 63
Author(s): Chuanshang Cheng, Hong Wei, Huichao Yu, Chong Xu, Siwen Jiang
Software Mentions: 2
Published: about 8 years ago

10.1186/s12866-019-1532-5

Transcriptional responses of Xanthomonas oryzae pv. oryzae to type III secretion system inhibitor ortho-coumaric acid
Cited by: 6
Author(s): Susu Fan, Fang Tian, Liwei Fang, Ching‐Hong Yang, Chenyang He
Software Mentions: 2
Published: over 7 years ago

10.1186/s12920-019-0502-y

LncRNA-miRNA-mRNA expression variation profile in the urine of calcium oxalate stone patients
Cited by: 16
Author(s): Xiongfa Liang, Yongchang Lai, Weizhou Wu, Dong Chen, Fangling Zhong, Jian Huang, Tao Zeng, Xiaolu Duan, Yapeng Huang, Shike Zhang, Shujue Li, Wenqi Wu
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.580081

Complete Genome Sequence of Enterobacter roggenkampii ED5, a Nitrogen Fixing Plant Growth Promoting Endophytic Bacterium With Biocontrol and Stress Tolerance Properties, Isolated From Sugarcane Root
Cited by: 53
Author(s): Dao-Jun Guo, Rajesh Kumar Singh, Pratiksha Singh, Dong-Ping Li, Anjney Sharma, Yong‐Xiu Xing, Xiu–Peng Song, Li‐Tao Yang, Yang–Rui Li
Software Mentions: 2
Published: about 6 years ago

10.1186/s12881-018-0522-z

Establishing a genetic link between FTO and VDR gene polymorphisms and obesity in the Emirati population
Cited by: 22
Author(s): Saad Khan, Sarah El Hajj Chehadeh, Mahera Abdulrahman, Wael Osman, Habiba Alsafar
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2015.01519

Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea
Cited by: 17
Author(s): Qi Ye, Jianan Liu, Jinzhou Du, Jing Zhang
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12916-019-1374-x

Low serum IGF1 is associated with hypertension and predicts early cardiovascular events in women with rheumatoid arthritis
Cited by: 17
Author(s): Malin C. Erlandsson, Lovisa Lyngfelt, N. David Åberg, Caroline Wasén, Rachelle A. Espino, Sofia Töyrä Silfverswärd, Mitra Nadali, Katarina Jood, Karin Andersson, Rille Pullerits, Maria Bokarewa
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.00655

Acacia Changes Microbial Indicators and Increases C and N in Soil Organic Fractions in Intercropped Eucalyptus Plantations
Cited by: 44
Author(s): Arthur Prudêncio de Araújo Pereira, Maurício Rumenos Guidetti Zagatto, Carolina Braga Brandani, Denise de Lourdes Colombo Mescolotti, Simone Raposo Cotta, José Leonardo de Moraes Gonçalves, Elke Jurandy Bran Nogueira Cardoso
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.02658

Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica
Cited by: 17
Author(s): Vaibhav Srivastava, Svetlana Rezinciuc, Vincent Bulone
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2020.02081

Cross-Stress Adaptation in a Piezophilic and Hyperthermophilic Archaeon From Deep Sea Hydrothermal Vent
Cited by: 9
Author(s): Weishu Zhao, Xiao‐Pan Ma, Xiaoxia Liu, Huahua Jian, Yu Zhang, Xiang Xiao
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2334-14-498

Host cytokine responses distinguish invasive from airway isolates of the Streptococcusmilleri/anginosis group
Cited by: 3
Author(s): Julienne C. Kaiser, Chris P. Verschoor, Michael G. Surette, Dawn M. E. Bowdish
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2020.588666

Butyrate Mitigates Weanling Piglets From Lipopolysaccharide-Induced Colitis by Regulating Microbiota and Energy Metabolism of the Gut–Liver Axis
Cited by: 16
Author(s): Yunsheng Han, Qingyu Zhao, Chaohua Tang, Ying Liu, Kai Zhang, Fadi Li, Junmin Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-016-3463-y

Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways
Cited by: 15
Author(s): Mehran Dastmalchi, Patrick Chapman, Jaeju Yu, Ryan E Austin, Sangeeta Dhaubhadel
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-15-306

Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses
Cited by: 35
Author(s): Kerstin Otte, Thomas Fröhlich, Georg J. Arnold, Christian Laforsch
Software Mentions: 2
Published: over 12 years ago

10.3389/fmolb.2021.715765

The Specific NLRP3 Antagonist IFM-514 Decreases Fibrosis and Inflammation in Experimental Murine Non-Alcoholic Steatohepatitis
Cited by: 12
Author(s): Sandra Torres, Maximilian Joseph Brol, Fernando Magdaleno, Robert Schierwagen, Frank Erhard Uschner, Sabine Klein, Cristina Ortiz, Olaf Tyc, Nadine Bachtler, James Stunden, Damien Bertheloot, Ana Kitanovic, Brian Sanchez, Jacob E. Schrum, William Roush, Luigi Franchi, Kate Byth, Eicke Latz, Jonel Trebicka
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-5718-x

Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng
Cited by: 36
Author(s): Le Xue, Zilong He, Xiaochun Bi, Wei Xü, Ting Wei, Shuangxiu Wu, Songnian Hu
Software Mentions: 2
Published: over 7 years ago

10.3389/fnmol.2017.00039

Mapping Gene Expression in Excitatory Neurons during Hippocampal Late-Phase Long-Term Potentiation
Cited by: 46
Author(s): Patrick B. Chen, Riki Kawaguchi, Charles Blum, Jennifer M. Achiro, Giovanni Coppola, Thomas J. O’Dell, Kelsey C. Martin
Software Mentions: 2
Published: over 9 years ago

10.3389/fnut.2018.00036

Metabolomics and Ionomics of Potato Tuber Reveals an Influence of Cultivar and Market Class on Human Nutrients and Bioactive Compounds
Cited by: 36
Author(s): Jacqueline M. Chaparro, David G. Holm, Corey D. Broeckling, Jessica E. Prenni, Adam L. Heuberger
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2020.00829

High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-020-6667-0

Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism
Cited by: 13
Author(s): Michelle Orane Schemberger, Marília Aparecida Stroka, Lúcia Margarete dos Reis, Kamila Karoline de Souza Los, Gillize Aparecida Telles de Araujo, Michelle Zibetti Tadra Sfeir, Carolina Weigert Galvão, Rafael Mazer Etto, Amanda Regina Godoy Baptistão, Ricardo Antônio Ayub
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2018.00070

Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma
Cited by: 38
Author(s): Uwe Möginger, Sonja Grunewald, René Hennig, Chu-Wei Kuo, Falko Schirmeister, Harald Voth, Erdmann Rapp, Kay‐Hooi Khoo, Peter H. Seeberger, Jan‐Christoph Simon, Daniel Kolarich
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2020.01421

Analysis of Differentially Expressed Long Non-coding RNAs and the Associated TF-mRNA Network in Tongue Squamous Cell Carcinoma
Cited by: 6
Author(s): Mi Zhang, Zexi Chen, Sihui Zhang, Ling Wu, Yinghui Jie, Ying Liao, Yue Huang, Chen Chen Jiang, Bin Shi
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-9-346

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
Cited by: 50
Author(s): Martin Kircher, Christoph Bock, Martina Paulsen
Software Mentions: 2
Published: over 18 years ago

10.1186/s12864-017-4426-7

Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root
Cited by: 68
Author(s): Solmaz Irani, Brett Trost, Matthew Waldner, Naghabushana K. Nayidu, J. C. Tu, Anthony Kusalik, Christopher D. Todd, Yangdou Wei, Peta C. Bonham‐Smith
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphar.2018.00258

Breathomics for Assessing the Effects of Treatment and Withdrawal With Inhaled Beclomethasone/Formoterol in Patients With COPD
Cited by: 25
Author(s): Paolo Montuschi, Giuseppe Santini, Nadia Mores, Alessia Vignoli, Francesco Montorsi, Rugia Shoreh, Leonardo Tenori, Gina Zini, Leonello Fuso, Chiara Mondino, Corrado Di Natale, A. D’Amico, Claudio Luchinat, Peter J. Barnes, Tim Higenbottam
Software Mentions: 2
Published: over 8 years ago

10.3389/fphar.2021.670785

Co-Treatment With Verapamil and Curcumin Attenuates the Behavioral Alterations Observed in Williams–Beuren Syndrome Mice by Regulation of MAPK Pathway and Microglia Overexpression
Cited by: 5
Author(s): Paula Ortiz‐Romero, Alejandro González-Simón, Gustavo Egea, Luis A. Pérez‐Jurado, Victoria Campuzano
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2019.00261

Arginine Vasotocin and Cortisol Co-regulate Vasotocinergic, Isotocinergic, Stress, and Thyroid Pathways in the Gilthead Sea Bream (Sparus aurata)
Cited by: 11
Author(s): Juan Antonio Martos-Sitcha, Laura Cádiz, Magdalena Gozdowska, Ewa Kulczykowska, Gonzalo Martínez‐Rodríguez, Juan Miguel Mancera
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.01842

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Cited by: 26
Author(s): Jinlong Zhang, Jiaxue Wang, Wei Jiang, Juge Liu, Songnan Yang, Junyi Gai, Yan Li
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2018.00264

Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2016.01958

Global Scale Transcriptional Profiling of Two Contrasting Barley Genotypes Exposed to Moderate Drought Conditions: Contribution of Leaves and Crowns to Water Shortage Coping Strategies
Cited by: 12
Author(s): Pavel Svoboda, Anna Janská, Vojtěch Spiwok, Ilja Tom Prášil, Klára Kosová, Pavel Vítámvás, Jaroslava Ovesná
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2017.00914

Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato
Cited by: 48
Author(s): Kai Zhang, Zhengdan Wu, Daobin Tang, Kai Luo, Huixiang Lu, Yingying Liu, Jie Dong, Xin Wang, Changwen Lv, Jichun Wang, Kun Lü
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: about 11 years ago

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