Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1093/brain/awz291
Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia
Cited by: 73
Author(s): Frédéric M. Vaz, John H McDermott, Mariëlle Alders, Saskia B. Wortmann, Stefan Kölker, Mia L. Pras‐Raves, Martin A. T. Vervaart, Henk van Lenthe, Angela C. M. Luyf, Hyung L. Elfrink, Kay Metcalfe, Sara Cuvertino, Peter E. Clayton, Rebecca Yarwood, Martin Lowe, Simon C. Lovell, R. Curtis Rogers, Deciphering Developmental Disorders Study, Antoine H. C. van Kampen, J. P. N. Ruiter, Ronald J. A. Wanders, Sacha Ferdinandusse, Michel van Weeghel, Marc Engelen, Siddharth Banka
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0142693
Transcriptomic Analysis of Induced Pluripotent Stem Cells Derived from Patients with Bipolar Disorder from an Old Order Amish Pedigree
Cited by: 32
Author(s): Kwi Hye Kim, Jiangang Liu, Rachelle J. Sells Galvin, Jeffrey L. Dage, Janice A. Egeland, Rosamund C. Smith, Kalpana Merchant, Steven M. Paul
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0220924
Epidemiological survey of serum titers from adults against various Gram-negative bacterial V-antigens
Cited by: 4
Author(s): Mao Kinoshita, Masaru Shimizu, Koichi Akiyama, Hideya Kato, Kiyoshi Moriyama, Teiji Sawa
Software Mentions: 2
Published: over 4 years ago
10.3390/cancers11111766
Collagen Induces a More Proliferative, Migratory and Chemoresistant Phenotype in Head and Neck Cancer via DDR1
Cited by: 35
Author(s): Sook Ling Lai, Malcolm Tan, Robert Hollows, Max Robinson, Maha Ibrahim, Sandra Margielewska, Eric Kenneth Parkinson, Anand Ramanathan, Rosnah Binti Zain, Hisham Mehanna, Rachel Spruce, Wenbin Wei, Ivy Chung, Paul G. Murray, Lee Fah Yap, Ian C. Paterson
Software Mentions: 2
Published: about 5 years ago
10.1128/mSystems.00052-16
Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Cited by: 186
Author(s): Aaron M. Walsh, Fiona Crispie, Kieran N. Kilcawley, Órla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 2
Published: about 8 years ago
10.3390/cancers12051147
Plasma-Derived Extracellular Vesicles Convey Protein Signatures That Reflect Pathophysiology in Lung and Pancreatic Adenocarcinomas
Cited by: 19
Author(s): Johannes F. Fahrmann, Xiangying Mao, Ehsan Irajizad, Hiroyuki Katayama, Michela Capello, Ichidai Tanaka, Toshiro Kato, Ignacio I. Wistuba, Anirban Maitra, Edwin J. Ostrin, Samir Hanash, Jody Vykoukal
Software Mentions: 2
Published: over 4 years ago
10.3390/cancers13051134
Distinct Signatures of Genomic Copy Number Variants Define Subgroups of Merkel Cell Carcinoma Tumors
Cited by: 6
Author(s): Natasha T. Hill, David Kim, Klaus J. Busam, Emily Y. Chu, Clayton Green, Isaac Brownell
Software Mentions: 2
Published: over 3 years ago
10.3390/cancers11010034
Antrocin Sensitizes Prostate Cancer Cells to Radiotherapy through Inhibiting PI3K/AKT and MAPK Signaling Pathways
Cited by: 31
Author(s): Yuan Chen, David T.W. Tzeng, Yiping Huang, Chun–Ming Lin, U‐Ging Lo, Chia‐Lin Wu, Lin H, Jer‐Tsong Hsieh, Chih‐Hsin Tang, Chih‐Ho Lai
Software Mentions: 2
Published: almost 6 years ago
10.3390/cancers11091359
Allosteric AKT Inhibitors Target Synthetic Lethal Vulnerabilities in E-Cadherin-Deficient Cells
Cited by: 22
Author(s): Nicola Bougen-Zhukov, Yasmin Nouri, Tanis Godwin, Megan Taylor, Christopher Hakkaart, Andrew Single, Tom P. Brew, Elizabeth Permina, Augustine Chen, Michael A. Black, Parry Guilford
Software Mentions: 2
Published: about 5 years ago
10.3390/cancers11101513
Transcriptome Profiling Reveals Matrisome Alteration as a Key Feature of Ovarian Cancer Progression
Cited by: 27
Author(s): Sumegha Mitra, Kartikeya Tiwari, Ram Podicheti, Taruni Pandhiri, Douglas B. Rusch, Andrea Bonetto, Chi Zhang, Anirban Mitra
Software Mentions: 2
Published: about 5 years ago
10.1186/s13068-017-0720-5
Development of a genetically programed vanillin-sensing bacterium for high-throughput screening of lignin-degrading enzyme libraries
Cited by: 24
Author(s): Barindra Sana, Burton K. Chia, Sarada Raghavan, R. Balamurugan, Niranjan Nagarajan, Jayasree Seayad, Farid J. Ghadessy
Software Mentions: 2
Published: almost 8 years ago
10.1016/j.cell.2017.11.033
Pharmacogenomics of GPCR Drug Targets
Cited by: 411
Author(s): Alexander S. Hauser, Sreenivas Chavali, Ikuo Masuho, Leonie Johanna Jahn, Kirill A. Martemyanov, David E. Gloriam, M. Madan Babu
Software Mentions: 2
Published: almost 7 years ago
10.1042/BSR20204171
<i>Ddhd1</i> knockout mouse as a model of locomotive and physiological abnormality in familial spastic paraplegia
Cited by: 2
Author(s): Takuya Morikawa, Hiroaki Ohishi, Kengo Kosaka, Tomofumi Shimojo, Akihiro Nagano, Itsuki Taniguchi, Ryuta Fujioka, Kousuke Moriyama, Motoko Unoki, Masatomo Takahashi, Motonao Nakao, Yoshihiro Izumi, Takeshi Bamba, Hidetada Sasaki, Satoshi Miura, Hiroki Shibata
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41419-020-2464-6
DNA:RNA hybrids form at DNA double-strand breaks in transcriptionally active loci
Cited by: 32
Author(s): Aldo S. Bader, Martin Bushell
Software Mentions: 2
Published: over 4 years ago
10.1038/cddis.2014.566
Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma
Cited by: 181
Author(s): Eric A. Singer, Jonathon Judkins, Nathan Salomonis, Lisa Matlaf, Patricia Soteropoulos, Sean D. McAllister, Liliana Soroceanu
Software Mentions: 2
Published: almost 10 years ago
10.1111/cpr.13059
Genome stabilization by RAD51‐stimulatory compound 1 enhances efficiency of somatic cell nuclear transfer‐mediated reprogramming and full‐term development of cloned mouse embryos
Cited by: 6
Author(s): Ah Reum Lee, Jihoon Park, Sung Han Shim, Kwonho Hong, Hyeonwoo La, Kyung-Soon Park, Dong Ryul Lee
Software Mentions: 2
Published: over 3 years ago
10.1128/mSystems.00741-19
Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
Cited by: 45
Author(s): Xiaogai Wang, Run‐Cang Sun, Yinping Tian, Kai Guo, Hang Sun, Xiaojing Liu, Haiyan Chu, Binbin Liu
Software Mentions: 2
Published: over 4 years ago
10.1042/BSR20191554
Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA–miRNA–mRNA networks and Cox regression models
Cited by: 14
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Wei Hua Jia, Qi Song, Changgang Sun
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.stem.2018.01.020
Macrophage-Derived Extracellular Succinate Licenses Neural Stem Cells to Suppress Chronic Neuroinflammation
Cited by: 189
Author(s): Luca Peruzzotti‐Jametti, Joshua D. Bernstock, Nunzio Vicario, Ana S.H. Costa, Chee Keong Kwok, Tommaso Leonardi, Lee M. Booty, Iacopo Bicci, Beatrice Balzarotti, Giulio Volpe, Giulia Mallucci, Giulia Manferrari, Matteo Donegà, Nunzio Iraci, Alice Braga, John M. Hallenbeck, Michael P. Murphy, Frank Edenhofer, Christian Frezza, Stefano Pluchino
Software Mentions: 2
Published: over 6 years ago
10.1016/j.cels.2018.02.001
Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes
Cited by: 64
Author(s): Spencer S. Watson, Mark Dane, Koei Chin, Zuzana Tatárová, Moqing Liu, Tiera Liby, Wallace Thompson, Rebecca Smith, Michel Nederlof, Elmar Bucher, David Kilburn, Matthew A. Whitman, Damir Sudar, Gordon B. Mills, Laura M. Heiser, Oliver Jonas, Joe W. Gray, James E. Korkola
Software Mentions: 2
Published: over 6 years ago
10.3390/cells8090951
Synergy of NUP98-HOXA10 Fusion Gene and NrasG12D Mutation Preserves the Stemness of Hematopoietic Stem Cells on Culture Condition
Cited by: 5
Author(s): Yong Dong, Chengxiang Xia, Qitong Weng, Tongjie Wang, Fang Hu, Kaitao Wang, Xiaofei Liu, Geng Yang, Lijuan Liu, Hongling Wu, Juan Du
Software Mentions: 2
Published: over 5 years ago
10.1155/2020/3268505
The Role of Overexpressed Apolipoprotein AV in Insulin-Resistant Hepatocytes
Cited by: 0
Author(s): Wang Zhao, Yaqiong Liu, Xiao‐Bo Liao, Shui‐Ping Zhao
Software Mentions: 2
Published: over 4 years ago
10.1186/s13148-015-0047-7
Identification of novel long non-coding RNAs in clear cell renal cell carcinoma
Cited by: 73
Author(s): Jasmine Jc Blondeau, Mario C. Deng, Isabella Syring, Sarah Schrödter, Doris Schmidt, Sven Perner, Stefan Müller, Jörg Ellinger
Software Mentions: 2
Published: almost 10 years ago
10.1186/s13148-020-00907-4
Genome-wide methylation patterns predict clinical benefit of immunotherapy in lung cancer
Cited by: 45
Author(s): Jeong Yeon Kim, Jung Kyoon Choi, Hyunchul Jung
Software Mentions: 2
Published: over 4 years ago
10.3390/biology10080782
Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Cited by: 105
Author(s): Zaki Saati‐Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.48788
Lmx1b is required at multiple stages to build expansive serotonergic axon architectures
Cited by: 30
Author(s): Lauren J. Donovan, W. Clay Spencer, Meagan M. Kitt, Brent A Eastman, Katherine J Lobur, Kexin Jiao, Jerry Silver, Evan S. Deneris
Software Mentions: 2
Published: over 5 years ago
10.3390/biology8020021
Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
Cited by: 1
Author(s): Waraporn Kraitavin, Kazutoshi Yoshitake, Yoji Igarashi, Susumu Mitsuyama, Shigeharu Kinoshita, Daisuke Kambayashi, Shugo Watabe, Shuichi Asakawa
Software Mentions: 2
Published: over 5 years ago
10.1186/s13148-020-00910-9
Gene co-expression and histone modification signatures are associated with melanoma progression, epithelial-to-mesenchymal transition, and metastasis
Cited by: 7
Author(s): Hátylas Azevedo, Guilherme Cavalcante Pessoa, Francisca Nathália de Luna Vitorino, Jérémie Nsengimana, Julia Newton-Bishop, Eduardo M. Reis, Júlia Pinheiro Chagas da Cunha, Miriam Galvonas Jasiulionis
Software Mentions: 2
Published: over 4 years ago
10.1186/s13148-017-0314-x
Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India
Cited by: 37
Author(s): Baidehi Basu, Joyeeta Chakraborty, Aditi Chandra, Atul Katarkar, Jadav Ritesh Kumar Baldevbhai, Debjit Dhar Chowdhury, Jharna Ray, Keya Chaudhuri, Raghunath Chatterjee
Software Mentions: 2
Published: almost 8 years ago
10.1101/2020.07.30.20165241
Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection
Cited by: 16
Author(s): Niyati Desai, Azfar Neyaz, Annamária Szabolcs, Angela R. Shih, Jonathan Chen, Vishal Thapar, Linda T. Nieman, Alexander Solovyov, Arnav Mehta, David Lieb, Anupriya S. Kulkarni, Christopher Jaicks, Christopher J. Pinto, Dejan Juric, Ivan Chebib, Robert B. Colvin, Arthur Y. Kim, R. J. Monroe, Sarah Warren, Patrick Danaher, Jason Reeves, Junsong Gong, Erroll H. Rueckert, Benjamin Greenbaum, Nir Hacohen, Stephen M. Lagana, Miguel N. Rivera, Lynette M. Sholl, James R. Stone, David T. Ting
Software Mentions: 2
Published: over 4 years ago
10.1186/s40659-020-00299-y
Microarray profiling and functional analysis of differentially expressed plasma exosomal circular RNAs in Graves’ disease
Cited by: 16
Author(s): Ying Sun, Wei Wang, Yuxiao Tang, Daping Wang, Liang Li, Na Min, Guantong Jiang, Qian Li, Shulin Chen, Jin Zhou
Software Mentions: 2
Published: over 4 years ago
10.1186/1752-0509-5-202
A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections
Cited by: 18
Author(s): Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12918-015-0159-x
Genome-scale resources for Thermoanaerobacterium saccharolyticum
Cited by: 22
Author(s): Devin H. Currie, Babu Raman, Christopher M. Gowen, Timothy J. Tschaplinski, Miriam Land, Steven D. Brown, Sean F. Covalla, Dawn M. Klingeman, Zamin K. Yang, Nancy L. Engle, C. M. Johnson, Miguel Rodríguez, Aubie Shaw, William R. Kenealy, Lee R. Lynd, Stephen S. Fong, Jonathan R. Mielenz, Brian H. Davison, David A. Hogsett, Christopher D. Herring
Software Mentions: 2
Published: over 9 years ago
10.1007/s00294-016-0642-y
A conserved role of the RSC chromatin remodeler in the establishment of nucleosome-depleted regions
Cited by: 11
Author(s): Carlo Yague-Sanz, Enrique Vázquez, Mar Sánchez, Francisco Antequera, Damien Hermand
Software Mentions: 2
Published: over 8 years ago
10.1186/s12918-018-0639-x
Co-expression of long non-coding RNAs and autism risk genes in the developing human brain
Cited by: 24
Author(s): Steven Cogill, Anand Srivastava, Mary Qu Yang, Liangjiang Wang
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.devcel.2012.01.005
Cell-Surface Proteomics Identifies Lineage-Specific Markers of Embryo-Derived Stem Cells
Cited by: 132
Author(s): Peter J. Rugg‐Gunn, Brian Cox, Fredrik Lanner, Parveen Sharma, Vladimir Ignatchenko, Angela McDonald, Jodi Garner, Anthony O. Gramolini, Janet Rossant, Thomas Kislinger
Software Mentions: 2
Published: over 12 years ago
10.1242/dev.125450
Constraint of gene expression by chromatin remodelling protein CHD4 facilitates lineage specification
Cited by: 43
Author(s): Aoife O’Shaughnessy-Kirwan, Jason Signolet, Ita Costello, Sarah Gharbi, Brian Hendrich
Software Mentions: 2
Published: almost 10 years ago
10.3389/fimmu.2019.00542
Discrepancies in the Tumor Microenvironment of Spontaneous and Orthotopic Murine Models of Pancreatic Cancer Uncover a New Immunostimulatory Phenotype for B Cells
Cited by: 56
Author(s): Sarah Spear, Juliana Candido, Jacqueline McDermott, Cristina Ghirelli, Eleni Maniati, Stephen A. Beers, Frances R. Balkwill, Hemant M. Kocher, Melania Capasso
Software Mentions: 2
Published: over 5 years ago
10.1186/1756-0500-7-761
Expression level of a flavonoid 3′-hydroxylase gene determines pathogen-induced color variation in sorghum
Cited by: 20
Author(s): Hiroshi Mizuno, Takayuki Yazawa, Shigemitsu Kasuga, Yuji Sawada, Jun Ogata, Tsuyu Ando, Hajime Kanamori, Jun‐ichi Yonemaru, Jianzhong Wu, Masami Yokota Hirai, Takashi Matsumoto, Hiroyuki Kawahigashi
Software Mentions: 2
Published: about 10 years ago
10.1186/1756-0500-7-440
Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: over 10 years ago
10.3389/fimmu.2018.02458
Absence of Regulatory T Cells Causes Phenotypic and Functional Switch in Murine Peritoneal Macrophages
Cited by: 15
Author(s): Jelena Škuljec, Adan Chari Jirmo, Anika Habener, Steven R. Talbot, Refik Pul, Ruth Grychtol, Malik Aydin, Christoph Kleinschnitz, Christine Happle, Gesine Hansen
Software Mentions: 2
Published: about 6 years ago
10.1186/s13104-015-1017-z
BMX: a tool for computing bacterial phyletic composition from orthologous maps
Cited by: 8
Author(s): Benard W. Kulohoma
Software Mentions: 2
Published: almost 10 years ago
10.3389/fimmu.2021.643441
Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.637659
Activation of Toll-Like Receptor 7 Signaling Pathway in Primary Sjögren's Syndrome-Associated Thrombocytopenia
Cited by: 10
Author(s): Shuo Zhang, Jingge Qu, Li Wang, Mengtao Li, Dong Xu, Yan Zhao, Fengchun Zhang, Xiaofeng Zeng
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.633201
Serum miRNA Signature in Rheumatoid Arthritis and “At-Risk Individuals”
Cited by: 32
Author(s): C Cunningham, Siobhan Wade, Achilleas Floudas, Carl Orr, Trudy McGarry, Siobhan Wade, Sian Cregan, Ursula Fearon, Douglas J. Veale
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2019.00516
Bioinformatics Analyses Determined the Distinct CNS and Peripheral Surrogate Biomarker Candidates Between Two Mouse Models for Progressive Multiple Sclerosis
Cited by: 11
Author(s): Seiichi Omura, Fumitaka Sato, Nicholas E. Martinez, Ah-Mee Park, Mitsugu Fujita, Nikki J. Kennett, Urška Cvek, Alireza Minagar, J. Steven Alexander, Ikuo Tsunoda
Software Mentions: 2
Published: over 5 years ago
10.3389/fimmu.2016.00381
Impact of Enriched Environment on Murine T Cell Differentiation and Gene Expression Profile
Cited by: 15
Author(s): Lorenza Rattazzi, Giuseppa Piras, Samuel Brod, Koval Smith, M. Ono, Fulvio D’Acquisto
Software Mentions: 2
Published: about 8 years ago
10.3389/fmed.2020.00112
Single-Cell Transcriptional Profiling of Cells Derived From Regenerating Alveolar Ducts
Cited by: 3
Author(s): Alexandra B. Ysasi, Robert D. Bennett, Willi L. Wagner, Cristian D. Valenzuela, Andrew B. Servais, Akira Tsuda, Saumyadipta Pyne, Shuqiang Li, Jonna Grimsby, Prapti Pokharel, Kenneth J. Livak, Maximilian Ackermann, Paul C. Blainey, Steven J. Mentzer
Software Mentions: 2
Published: over 4 years ago
10.3389/fmed.2021.704328
Effects of Previous Kasai Surgery on Gut Microbiota and Bile Acid in Biliary Atresia With End-Stage Liver Disease
Cited by: 2
Author(s): Wei Song, Li‐Ying Sun, Zhi‐Jun Zhu
Software Mentions: 2
Published: about 3 years ago
10.1186/s12870-021-02969-9
The physiological and molecular mechanisms of N transfer in Eucalyptus and Dalbergia odorifera intercropping systems using root proteomics
Cited by: 6
Author(s): Xianyu Yao, Lusheng Liao, Yongzhen Huang, Ge Fan, Mei Yang, Shaoming Ye
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2017.01578
Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc
Cited by: 18
Author(s): Kyle R. Hager, Heather Fullerton, D. A. Butterfield, Craig L. Moyer
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2021.653283
Illumina Sequencing and Metabolomics Analysis Reveal Thiamine Modulation of Ruminal Microbiota and Metabolome Characteristics in Goats Fed a High-Concentrate Diet
Cited by: 15
Author(s): Yuxiang Ma, Chao Wang, Hao Zhang, Lihuai Yu, Dong Li, Daoqing Gong, Junhu Yao, Hongrong Wang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12870-016-0880-7
A fast and simple LC-MS-based characterization of the flavonoid biosynthesis pathway for few seed(ling)s
Cited by: 11
Author(s): Benjamin Jaegle, M. Kalle Uroic, Xu Holtkotte, Christina Lucas, Andreas Ole Termath, Hans‐Günther Schmalz, Marcel Bucher, Ute Hoecker, Martin Hülskamp, Andrea Schrader
Software Mentions: 2
Published: about 8 years ago
10.3389/fmicb.2018.00226
Impervious Surfaces Alter Soil Bacterial Communities in Urban Areas: A Case Study in Beijing, China
Cited by: 28
Author(s): Yinhong Hu, Xiaohui Dou, Juanyong Li, Feng Li
Software Mentions: 2
Published: almost 7 years ago
10.3389/fmicb.2013.00342
Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments
Cited by: 44
Author(s): Jennifer L. Bowen, Jarrett E. K. Byrnes, David Weisman, Cory Colaneri
Software Mentions: 2
Published: almost 12 years ago
10.3389/fmicb.2012.00441
Eukaryotic diversity at pH extremes
Cited by: 40
Author(s): Linda Amaral‐Zettler
Software Mentions: 2
Published: almost 12 years ago
10.1186/s12870-014-0281-8
Non-specific lipid transfer proteins in maize
Cited by: 68
Author(s): Kaifa Wei, Xiaojun Zhong
Software Mentions: 2
Published: about 10 years ago
10.3389/fmicb.2020.01635
DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance
Cited by: 11
Author(s): Muntasir Ali, Ann Provoost, Kristel Mijnendonckx, Rob Van Houdt, Daniël Charlier
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2019.02100
How Management Practices Within a Poultry House During Successive Flock Rotations Change the Structure of the Soil Microbiome
Cited by: 13
Author(s): Tawni L. Crippen, Cynthia L. Sheffield, Baneshwar Singh, J. A. Byrd, Ross C. Beier
Software Mentions: 2
Published: about 5 years ago
10.1186/s12870-018-1529-5
Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat
Cited by: 56
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 2
Published: almost 6 years ago
10.1084/jem.20180801
Ezh2 inhibition in Kras-driven lung cancer amplifies inflammation and associated vulnerabilities
Cited by: 27
Author(s): Michela Serresi, Bjørn Siteur, Danielle Hulsman, Matthias Jürgen Schmitt, Cor Lieftink, Ben Morris, Matteo Cesaroni, Natalie Proost, Roderick L. Beijersbergen, Maarten van Lohuizen, Gaetano Gargiulo
Software Mentions: 2
Published: about 6 years ago
10.3389/fmicb.2019.01474
Comparative Transcriptome Profiling of Gaeumannomyces graminis var. tritici in Wheat Roots in the Absence and Presence of Biocontrol Bacillus velezensis CC09
Cited by: 10
Author(s): Xingxing Kang, Yu Guo, Shuai Leng, Lei Xiao, Lanhua Wang, Yarong Xue, Changhong Liu
Software Mentions: 2
Published: over 5 years ago
10.3390/jof7010011
Botrytis cinerea Transcriptome during the Infection Process of the Bryophyte Physcomitrium patens and Angiosperms
Cited by: 11
Author(s): Guillermo Reboledo, Astrid Agorio, Lucía Vignale, Ramón Alberto Batista-García, Inés Ponce de León
Software Mentions: 2
Published: almost 4 years ago
10.3390/jof7030210
The Abundance and Diversity of Fungi in a Hypersaline Microbial Mat from Guerrero Negro, Baja California, México
Cited by: 9
Author(s): Paula Maza-Márquez, Michael D. Lee, Brad M. Bebout
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2019.00011
Nasopharyngeal Microbiota in Children With Invasive Pneumococcal Disease: Identification of Bacteria With Potential Disease-Promoting and Protective Effects
Cited by: 28
Author(s): Anny Camelo-Castillo, Desirée Henares, Pedro Brotons, Antonio Galiana, Juan Carlos Rodrı́guez, Álex Mira, Carmen Muñoz-Almagro
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2017.00202
Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4
Cited by: 69
Author(s): Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schümann, Manfred Rohde, Stefan Spring, Frank Oliver Glöckner, Christian Jogler, Mareike Jogler
Software Mentions: 2
Published: almost 8 years ago
10.3390/jof7090724
Molecular Insights into Defense Responses of Vietnamese Maize Varieties to Fusarium verticillioides Isolates
Cited by: 9
Author(s): Trang Minh Tran, Maarten Ameye, Sofie Landschoot, Frank Devlieghere, Sarah De Saeger, Mia Eeckhout, Kris Audenaert
Software Mentions: 2
Published: about 3 years ago
10.1186/s12870-017-1068-5
Ambient temperature and genotype differentially affect developmental and phenotypic plasticity in Arabidopsis thaliana
Cited by: 64
Author(s): Carla Ibáñez, Yvonne Poeschl, Tom Peterson, Julia Bellstädt, Kathrin Denk, Andreas Gogol-Döring, Marcel Quint, Carolin Delker
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2017.02132
Ecogenomics and Taxonomy of Cyanobacteria Phylum
Cited by: 82
Author(s): Juline M. Walter, Felipe H. Coutinho, Bas E. Dutilh, Jean Swings, Fabiano L. Thompson, Cristiane C. Thompson
Software Mentions: 2
Published: about 7 years ago
10.3389/fmicb.2018.01462
Sewage Sludge Microbial Structures and Relations to Their Sources, Treatments, and Chemical Attributes
Cited by: 98
Author(s): Andréa M. A. Nascimento, Adijailton José de Souza, Pedro Avelino Maia de Andrade, Fernando Dini Andreote, Aline Renée Coscione, Fernando Carvalho Oliveira, Jussara Borges Regitano
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2018.00876
The Invasive Brazilian Pepper Tree (Schinus terebinthifolius) Is Colonized by a Root Microbiome Enriched With Alphaproteobacteria and Unclassified Spartobacteria
Cited by: 17
Author(s): Karim Dawkins, Nwadiuto Esiobu
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2015.01493
Recurrence and Frequency of Disturbance have Cumulative Effect on Methanotrophic Activity, Abundance, and Community Structure
Cited by: 30
Author(s): Adrian Ho, Erik van den Brink, Andreas Reim, Sascha Krause, Paul L. E. Bodelier
Software Mentions: 2
Published: almost 9 years ago
10.3389/fmicb.2020.01519
Fungal Endophyte Communities of Crucifer Crops Are Seasonally Dynamic and Structured by Plant Identity, Plant Tissue and Environmental Factors
Cited by: 10
Author(s): Junhui Chen, Komivi Senyo Akutse, Hafiz Sohaib Ahmed Saqib, Xiaolu Wu, Fei‐Ying Yang, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
Software Mentions: 2
Published: over 4 years ago
10.1111/acel.12472
Mitochondrial‐targeted catalase is good for the old mouse proteome, but not for the young: ‘reverse’ antagonistic pleiotropy?
Cited by: 31
Author(s): Nathan Basisty, Dao Fu Dai, Arni Gagnidze, Lemuel Gitari, Jeanne Fredrickson, Yvonne Maina, Richard P. Beyer, Mary J. Emond, Edward J. Hsieh, Michael J. MacCoss, George M. Martin, Peter S. Rabinovitch
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2016.00458
Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species
Cited by: 71
Author(s): Stephanie Lawler, Christina A. Kellogg, Rachel W. Clostio, Sandra Brooke, Steve W. Ross
Software Mentions: 2
Published: over 8 years ago
10.1155/2016/2895303
Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,<i>Pinctada fucata</i>, Based on Transcriptome Analysis
Cited by: 8
Author(s): Haimei Li, Bo Zhang, Guiju Huang, Bao-Suo Liu, Sigang Fan, Dongling Zhang, Dahui Yu
Software Mentions: 2
Published: almost 9 years ago
10.3389/fmicb.2020.01973
Monocyte and Macrophage-Mediated Pathology and Protective Immunity During Schistosomiasis
Cited by: 15
Author(s): Camila Oliveira Silva Souza, Luiz Gustavo Gardinassi, Vanderlei Rodrigues, Lúcia Helena Faccioli
Software Mentions: 2
Published: over 4 years ago
10.1186/s12866-020-1698-x
Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
Cited by: 14
Author(s): Otávio Henrique Bezerra Pinto, Thais F. Silva, Carla Simone Vizzotto, Renata Henrique Santana, Fabyano Álvares Cardoso Lopes, Bruno Santana da Silva, Fabiano L. Thompson
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmicb.2019.00030
The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans
Cited by: 11
Author(s): Rodrigo Flores-Ríos, Ana Moya-Beltrán, Claudia Pareja-Barrueto, Mauricio Arenas-Salinas, Sebastián Valenzuela, Omar Orellana, Raquel Quatrini
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2018.01989
Metabolic Syndrome During Perinatal Period in Sows and the Link With Gut Microbiota and Metabolites
Cited by: 63
Author(s): Chuanshang Cheng, Hong Wei, Huichao Yu, Chong Xu, Siwen Jiang
Software Mentions: 2
Published: over 6 years ago
10.1186/s12866-019-1532-5
Transcriptional responses of Xanthomonas oryzae pv. oryzae to type III secretion system inhibitor ortho-coumaric acid
Cited by: 6
Author(s): Susu Fan, Fang Tian, Liwei Fang, Ching‐Hong Yang, Chenyang He
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2020.580081
Complete Genome Sequence of Enterobacter roggenkampii ED5, a Nitrogen Fixing Plant Growth Promoting Endophytic Bacterium With Biocontrol and Stress Tolerance Properties, Isolated From Sugarcane Root
Cited by: 53
Author(s): Dao-Jun Guo, Rajesh Kumar Singh, Pratiksha Singh, Dong-Ping Li, Anjney Sharma, Yong‐Xiu Xing, Xiu–Peng Song, Li‐Tao Yang, Yang–Rui Li
Software Mentions: 2
Published: about 4 years ago
10.1155/2019/9520642
<i>DREB</i> Genes from Common Bean (<i>Phaseolus vulgaris</i> L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2015.01519
Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea
Cited by: 17
Author(s): Qi Ye, Jianan Liu, Jinzhou Du, Jing Zhang
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12920-019-0502-y
LncRNA-miRNA-mRNA expression variation profile in the urine of calcium oxalate stone patients
Cited by: 16
Author(s): Xiongfa Liang, Yongchang Lai, Weizhou Wu, Dong Chen, Fangling Zhong, Jian Huang, Tao Zeng, Xiaolu Duan, Yapeng Huang, Shike Zhang, Shujue Li, Wenqi Wu
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2018.00655
Acacia Changes Microbial Indicators and Increases C and N in Soil Organic Fractions in Intercropped Eucalyptus Plantations
Cited by: 44
Author(s): Arthur Prudêncio de Araújo Pereira, Maurício Rumenos Guidetti Zagatto, Carolina Braga Brandani, Denise de Lourdes Colombo Mescolotti, Simone Raposo Cotta, José Leonardo de Moraes Gonçalves, Elke Jurandy Bran Nogueira Cardoso
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2017.02658
Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica
Cited by: 17
Author(s): Vaibhav Srivastava, Svetlana Rezinciuc, Vincent Bulone
Software Mentions: 2
Published: almost 7 years ago
10.3389/fmicb.2020.02081
Cross-Stress Adaptation in a Piezophilic and Hyperthermophilic Archaeon From Deep Sea Hydrothermal Vent
Cited by: 9
Author(s): Weishu Zhao, Xiao‐Pan Ma, Xiaoxia Liu, Huahua Jian, Yu Zhang, Xiang Xiao
Software Mentions: 2
Published: about 4 years ago
10.1186/s12881-018-0522-z
Establishing a genetic link between FTO and VDR gene polymorphisms and obesity in the Emirati population
Cited by: 22
Author(s): Saad Khan, Sarah El Hajj Chehadeh, Mahera Abdulrahman, Wael Osman, Habiba Alsafar
Software Mentions: 2
Published: almost 7 years ago
10.3389/fmicb.2020.588666
Butyrate Mitigates Weanling Piglets From Lipopolysaccharide-Induced Colitis by Regulating Microbiota and Energy Metabolism of the Gut–Liver Axis
Cited by: 16
Author(s): Yunsheng Han, Qingyu Zhao, Chaohua Tang, Ying Liu, Kai Zhang, Fadi Li, Junmin Zhang
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12916-019-1374-x
Low serum IGF1 is associated with hypertension and predicts early cardiovascular events in women with rheumatoid arthritis
Cited by: 17
Author(s): Malin C. Erlandsson, Lovisa Lyngfelt, N. David Åberg, Caroline Wasén, Rachelle A. Espino, Sofia Töyrä Silfverswärd, Mitra Nadali, Katarina Jood, Karin Andersson, Rille Pullerits, Maria Bokarewa
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2334-14-498
Host cytokine responses distinguish invasive from airway isolates of the Streptococcusmilleri/anginosis group
Cited by: 3
Author(s): Julienne C. Kaiser, Chris P. Verschoor, Michael G. Surette, Dawn M. E. Bowdish
Software Mentions: 2
Published: about 10 years ago
10.1186/s12864-016-3463-y
Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways
Cited by: 15
Author(s): Mehran Dastmalchi, Patrick Chapman, Jaeju Yu, Ryan E Austin, Sangeeta Dhaubhadel
Software Mentions: 2
Published: almost 8 years ago
10.3389/fmolb.2021.715765
The Specific NLRP3 Antagonist IFM-514 Decreases Fibrosis and Inflammation in Experimental Murine Non-Alcoholic Steatohepatitis
Cited by: 12
Author(s): Sandra Torres, Maximilian Joseph Brol, Fernando Magdaleno, Robert Schierwagen, Frank Erhard Uschner, Sabine Klein, Cristina Ortiz, Olaf Tyc, Nadine Bachtler, James Stunden, Damien Bertheloot, Ana Kitanovic, Brian Sanchez, Jacob E. Schrum, William Roush, Luigi Franchi, Kate Byth, Eicke Latz, Jonel Trebicka
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2164-15-306
Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses
Cited by: 35
Author(s): Kerstin Otte, Thomas Fröhlich, Georg J. Arnold, Christian Laforsch
Software Mentions: 2
Published: over 10 years ago
10.1186/s12864-019-5718-x
Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng
Cited by: 36
Author(s): Le Xue, Zilong He, Xiaochun Bi, Wei Xü, Ting Wei, Shuangxiu Wu, Songnian Hu
Software Mentions: 2
Published: over 5 years ago
10.3389/fnmol.2017.00039
Mapping Gene Expression in Excitatory Neurons during Hippocampal Late-Phase Long-Term Potentiation
Cited by: 46
Author(s): Patrick B. Chen, Riki Kawaguchi, Charles Blum, Jennifer M. Achiro, Giovanni Coppola, Thomas J. O’Dell, Kelsey C. Martin
Software Mentions: 2
Published: almost 8 years ago
10.3389/fnut.2018.00036
Metabolomics and Ionomics of Potato Tuber Reveals an Influence of Cultivar and Market Class on Human Nutrients and Bioactive Compounds
Cited by: 36
Author(s): Jacqueline M. Chaparro, David G. Holm, Corey D. Broeckling, Jessica E. Prenni, Adam L. Heuberger
Software Mentions: 2
Published: over 6 years ago
10.3389/fonc.2020.00829
High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2018.00070
Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma
Cited by: 38
Author(s): Uwe Möginger, Sonja Grunewald, René Hennig, Chu-Wei Kuo, Falko Schirmeister, Harald Voth, Erdmann Rapp, Kay‐Hooi Khoo, Peter H. Seeberger, Jan‐Christoph Simon, Daniel Kolarich
Software Mentions: 2
Published: over 6 years ago