cran: gplots | Projects | Ecosyste.ms: Papers

10.1038/tp.2016.65

Physical activity delays hippocampal neurodegeneration and rescues memory deficits in an Alzheimer disease mouse model
Cited by: 53
Author(s): Melanie Hüttenrauch, Andreas Brauß, Anastasiia Kurdakova, Henning Borgers, Florian Klinker, David Liebetanz, Gabriela Salinas-Riester, Jens Wiltfang, Hans-Wolfgang Klafki, Oliver Wirths
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-15-488

Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies
Cited by: 21
Author(s): Bingjie Zhao, Dehua Yang, Jing Jiang, Jinsong Li, Chunsun Fan, Menggui Huang, Yi Fan, Yan Jin, Youxin Jin
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-016-3233-x

A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures
Cited by: 2
Author(s): Bliss Lambert, Maheshi Dassanayake, Dong Ha Oh, Shana B. Garrett, Sang Yeol Lee, Gregg S. Pettis
Software Mentions: 2
Published: about 10 years ago

10.15252/emmm.201809571

Cobalt protoporphyrin <scp>IX</scp> increases endogenous G‐ <scp>CSF</scp> and mobilizes <scp>HSC</scp> and granulocytes to the blood
Cited by: 12
Author(s): Agata Szade, Krzysztof Szade, Witold Nowak, Karolina Bukowska-Strakovà, Lucie Muchová, Monika Gońka, Monika Żukowska, Maciej Cieśla, Neli Kachamakova‐Trojanowska, Marzena Rams-Baron, A. Ratuszna, Józef Dulak, Alicja Józkowicz
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.01307-18

An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila
Cited by: 25
Author(s): Lori R. Shapiro, Joseph N. Paulson, Brian J. Arnold, Erin D. Scully, Olga Zhaxybayeva, Naomi E. Pierce, Jorge Rocha, Vanja Klepac‐Ceraj, Kristina M. Holton, Roberto Kolter
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-019-6334-5

Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot
Cited by: 30
Author(s): Garima Raj, Mohammad Umar. Shadab, Sujata Deka, Manashi Das, Jilmil Baruah, Rupjyoti Bharali, Narayan Chandra Talukdar
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-017-3698-2

Global analysis of protein lysine succinylation profiles in common wheat
Cited by: 44
Author(s): Yumei Zhang, Guangyuan Wang, Limin Song, Mu Peng, Wang Shu, Wenxing Liang, Qingsong Lin
Software Mentions: 2
Published: over 9 years ago

10.3390/plants10081720

Comparison of Drought and Heat Resistance Strategies among Six Populations of Solanum chilense and Two Cultivars of Solanum lycopersicum
Cited by: 9
Author(s): Rémi Blanchard-Gros, Servane Bigot, Juan-Pablo Martínez, Stanley Lutts, Gea Guerriero, Muriel Quinet
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-017-3813-4

Uncovering the transcriptomic and epigenomic landscape of nicotinic receptor genes in non-neuronal tissues
Cited by: 12
Author(s): Bo Zhang, Pamela A. F. Madden, Junchen Gu, Xiaoyun Xing, Savita Sankar, Jennifer A. Karlow, Kristen L. Kroll, Ting Wang
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2019.01323

Transcriptome Analysis of the Hierarchical Response of Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity Stress
Cited by: 13
Author(s): Minoru Ueda, Atsushi Matsui, S. Watanabe, Makoto Kobayashi, Kazuki Saito, Maho Tanaka, Junko Ishida, Miyako Kusano, Mitsunori Seo, Motoaki Seki
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.17107

Epigenetic silencing of triple negative breast cancer hallmarks by Withaferin A
Cited by: 49
Author(s): Katarzyna Szarc vel Szic, Ken Declerck, René A. J. Crans, Jolien Diddens, David Scherf, Clarissa Gerhäuser, Wim Vanden Berghe
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-016-3413-8

Cecal MicroRNAome response to Salmonella enterica serovar Enteritidis infection in White Leghorn Layer
Cited by: 25
Author(s): Guixian Wu, Yukai Qi, Xiaoyi Liu, Ning Yang, Guiyun Xu, Liying Liu, Xianyao Li
Software Mentions: 2
Published: almost 10 years ago

10.5713/ajas.19.0221

Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.20167381

Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila
Cited by: 98
Author(s): Malene L. Urbanus, Andrew T. Quaile, P.J. Stogios, Mariya Morar, Chitong Rao, Rosa Di Leo, E. Evdokimova, Mandy Hiu Yi Lam, Christina Oatway, M.E. Cuff, J. Osipiuk, K. Michalska, B. Nocek, Mikko Taipale, Alexei Savchenko, Alexander W. Ensminger
Software Mentions: 2
Published: almost 10 years ago

10.3390/plants9030405

De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00761-19

Dominance of Gas-Eating, Biofilm-Forming Methylobacterium Species in the Evaporator Cores of Automobile Air-Conditioning Systems
Cited by: 2
Author(s): Chulwoo Park, Hye Su Jung, Tae Sun Park, Che Ok Jeon, Woojun Park
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo11070427

Primary Metabolite Profile Changes in Coffea spp. Promoted by Single and Combined Exposure to Drought and Elevated CO2 Concentration
Cited by: 12
Author(s): Ana Margarida Rodrigues, Tiago F. Jorge, Sonia Osorio, Delphine M. Pott, Fernando C. Lidon, Fábio M. DaMatta, Isabel Marques, Ana I. Ribeiro‐Barros, José C. Ramalho, Carla António
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00052-16

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Cited by: 186
Author(s): Aaron M. Walsh, Fiona Crispie, Kieran N. Kilcawley, Órla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-016-3308-8

A transcriptome-based model of central memory CD4 T cell death in HIV infection
Cited by: 11
Author(s): Gustavo Olvera-García, Tania Aguilar-García, Fany Gutiérrez-Jasso, Iván Imaz-Rosshandler, Claudia Rangel‐Escareño, Lorena Orozco, Irma Aguilar-Delfín, Joel Armando Vázquez-Pérez, Joaquı́n Zúñiga, Santiago Pérez-Patrigeón, Enrique Espinosa
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-017-4366-2

Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening
Cited by: 38
Author(s): Jianhui Wang, Jianjun Li, Keling Chen, Hongwen Li, Jian He, Bin Guan, Li He
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms15069386

The Transcriptomes of the Crucian Carp Complex (Carassius auratus) Provide Insights into the Distinction between Unisexual Triploids and Sexual Diploids
Cited by: 12
Author(s): Chunyan Li, Jiong-Tang Li, Youyi Kuang, Ruihua Xu, Zixia Zhao, Guangyuan Hou, Hongwei Liang, Xin Sun
Software Mentions: 2
Published: over 12 years ago

10.1186/s13075-017-1474-y

VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSystems.00741-19

Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
Cited by: 45
Author(s): Xiaogai Wang, Run‐Cang Sun, Yinping Tian, Kai Guo, Hang Sun, Xiaojing Liu, Haiyan Chu, Binbin Liu
Software Mentions: 2
Published: over 6 years ago

10.1016/j.exer.2019.107901

Features of ectopic lymphoid-like structures in human uveitis
Cited by: 9
Author(s): Simon Epps, Natalie Coplin, Philip J Luthert, Andrew D. Dick, Sarah E. Coupland, Lindsay B. Nicholson
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2407-14-46

A comprehensive look at transcription factor gene expression changes in colorectal adenomas
Cited by: 20
Author(s): Janine Vonlanthen, Michał Okoniewski, Mirco Menigatti, Elisa Cattaneo, Daniela Pellegrini-Ochsner, Ritva Haider, Josef Jiricny, Teresa Staiano, Federico Buffoli, Giancarlo Marra
Software Mentions: 2
Published: almost 13 years ago

10.1101/2020.07.30.20165241

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection
Cited by: 16
Author(s): Niyati Desai, Azfar Neyaz, Annamária Szabolcs, Angela R. Shih, Jonathan Chen, Vishal Thapar, Linda T. Nieman, Alexander Solovyov, Arnav Mehta, David Lieb, Anupriya S. Kulkarni, Christopher Jaicks, Christopher J. Pinto, Dejan Juric, Ivan Chebib, Robert B. Colvin, Arthur Y. Kim, R. J. Monroe, Sarah Warren, Patrick Danaher, Jason Reeves, Junsong Gong, Erroll H. Rueckert, Benjamin Greenbaum, Nir Hacohen, Stephen M. Lagana, Miguel N. Rivera, Lynette M. Sholl, James R. Stone, David T. Ting
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms18102155

Predicting Amyloidogenic Proteins in the Proteomes of Plants
Cited by: 29
Author(s): Kirill S. Antonets, Anton A. Nizhnikov
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms21197199

Transcriptional and Metabolic Profiling of Potato Plants Expressing a Plastid-Targeted Electron Shuttle Reveal Modulation of Genes Associated to Drought Tolerance by Chloroplast Redox Poise
Cited by: 11
Author(s): Juan José Pierella Karlusich, Rocío C. Arce, Fahimeh Shahinnia, Sophia Sonnewald, Uwe Sonnewald, Matías D. Zurbriggen, Mohammad‐Reza Hajirezaei, Néstor Carrillo
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-015-1897-2

cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers
Cited by: 13
Author(s): Jeffrey Ross, A. Kuzin, Theodore M. Brody, Ward F. Odenwald
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-020-07025-8

Leishmania infection induces a limited differential gene expression in the sand fly midgut
Cited by: 11
Author(s): Iliano V. Coutinho-Abreu, Tiago D. Serafim, Claudio Meneses, Shaden Kamhawi, Fabiano Oliveira, Jesús G. Valenzuela
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103783

Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-020-6543-y

Transcriptional profiling and physiological roles of Aedes aegypti spermathecal-related genes
Cited by: 16
Author(s): Tales Vicari Pascini, Marcelo Ramalho-Ortigão, José M. C. Ribeiro, Marcelo Jacobs-Lorena, Gustavo Ferreira Martins
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-015-1708-9

Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation
Cited by: 69
Author(s): John R. Tuttle, Gyoungju Nah, Mary V. Duke, Danny Alexander, Xueying Guan, Qingxin Song, Z. Jeffrey Chen, Brian E. Scheffler, Candace H. Haigler
Software Mentions: 2
Published: over 11 years ago

10.3390/pathogens6040045

The Use of Hyperimmune Chicken Reference Sera Is Not Appropriate for the Validation of Influenza Pseudotype Neutralization Assays
Cited by: 0
Author(s): Francesca Ferrara, Eleonora Molesti, Simon D. Scott, Giovanni Cattoli, Nigel Temperton
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2019.01292

Data-Mining Approach on Transcriptomics and Methylomics Placental Analysis Highlights Genes in Fetal Growth Restriction
Cited by: 13
Author(s): Floris Chabrun, Noémie Huetz, Xavier Dieu, Guillaume Rousseau, Guillaume Bouzillé, Juan Manuel Chao de la Barca, Vincent Procaccio, Guy Lenaers, Odile Blanchet, Guillaume Legendre, Delphine Mirebeau‐Prunier, Marc Cuggia, Philippe Guardiola, Pascal Reynier, Géraldine Gascoin
Software Mentions: 2
Published: almost 7 years ago

10.3390/molecules23123151

Alteration of Intestinal Flora Stimulates Pulmonary microRNAs to Interfere with Host Antiviral Immunity in Influenza
Cited by: 15
Author(s): Ping Peng, Bin Yu, Yucong Shi, Li Deng, Huachong Xu, Sizhi Wu
Software Mentions: 2
Published: almost 8 years ago

10.1084/jem.20180801

Ezh2 inhibition in Kras-driven lung cancer amplifies inflammation and associated vulnerabilities
Cited by: 27
Author(s): Michela Serresi, Bjørn Siteur, Danielle Hulsman, Matthias Jürgen Schmitt, Cor Lieftink, Ben Morris, Matteo Cesaroni, Natalie Proost, Roderick L. Beijersbergen, Maarten van Lohuizen, Gaetano Gargiulo
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms21218210

Comparative Ubiquitome Analysis under Heat Stress Reveals Diverse Functions of Ubiquitination in Saccharina japonica
Cited by: 7
Author(s): Pengyan Zhang, Fuli Liu, Siqing Chen, Zhourui Liang, Wenjun Wang, Xiuyun Sun
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules26092664

Microbiological Study in Petrol-Spiked Soil
Cited by: 9
Author(s): Agata Borowik, Jadwiga Wyszkowska, J. Kucharski
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7010011

Botrytis cinerea Transcriptome during the Infection Process of the Bryophyte Physcomitrium patens and Angiosperms
Cited by: 11
Author(s): Guillermo Reboledo, Astrid Agorio, Lucía Vignale, Ramón Alberto Batista-García, Inés Ponce de León
Software Mentions: 2
Published: almost 6 years ago

10.3390/jof7030210

The Abundance and Diversity of Fungi in a Hypersaline Microbial Mat from Guerrero Negro, Baja California, México
Cited by: 9
Author(s): Paula Maza-Márquez, Michael D. Lee, Brad M. Bebout
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7090724

Molecular Insights into Defense Responses of Vietnamese Maize Varieties to Fusarium verticillioides Isolates
Cited by: 9
Author(s): Trang Minh Tran, Maarten Ameye, Sofie Landschoot, Frank Devlieghere, Sarah De Saeger, Mia Eeckhout, Kris Audenaert
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21249380

Structural Diversity and Highly Specific Host-Pathogen Transcriptional Regulation of Defensin Genes Is Revealed in Tomato
Cited by: 5
Author(s): Nikolaos Nikoloudakis, Polyxeni Pappi, Emmanouil A. Markakis, Spyridoula N. Charova, Dimitrios Fanourakis, Konstantinos Paschalidis, Costas Delis, Emmanuel A. Tzortzakakis, Georgios Tsaniklidis
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2021.690990

Identification and Validation of Potential Candidate Genes of Colorectal Cancer in Response to Fusobacterium nucleatum Infection
Cited by: 0
Author(s): Jiangguo Zhang, Zhimo Wang, Hong Liu, Guojun Li
Software Mentions: 2
Published: about 5 years ago

10.1155/2016/2895303

Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,Pinctada fucata, Based on Transcriptome Analysis
Cited by: 8
Author(s): Haimei Li, Bo Zhang, Guiju Huang, Bao-Suo Liu, Sigang Fan, Dongling Zhang, Dahui Yu
Software Mentions: 2
Published: almost 11 years ago

10.1155/2019/9520642

DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-019-3405-z

Interpreting mosquito feeding patterns in Australia through an ecological lens: an analysis of blood meal studies
Cited by: 18
Author(s): Eloise Stephenson, Amanda K. Murphy, Cassie C. Jansen, Alison J. Peel, Hamish McCallum
Software Mentions: 2
Published: over 7 years ago

10.1155/2016/3605302

A Cross-Study Biomarker Signature of Human Bronchial Epithelial Cells Infected with Respiratory Syncytial Virus
Cited by: 7
Author(s): Luiz Gustavo Gardinassi
Software Mentions: 2
Published: almost 11 years ago

10.7150/ijms.35984

Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.20226

lncRNAs PVT1 and HAR1A are prognosis biomarkers and indicate therapy outcome for diffuse glioma patients
Cited by: 44
Author(s): Hecun Zou, Long‐Fei Wu, Yang Yi, Shuang Li, Ying Mei, Yongbin Liu, Lihua Zhang, Yuanda Cheng, Hong‐Hao Zhou
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms18112419

Comparative Proteomic Analysis of Lysine Acetylation in Fish CIK Cells Infected with Aquareovirus
Cited by: 11
Author(s): Hongbo Guo, Jie Zhang, Yaping Wang, Chen Bu, Yanyan Zhou, Fang Qin
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2015.01260

Microarray Meta-Analysis Focused on the Response of Genes Involved in Redox Homeostasis to Diverse Abiotic Stresses in Rice
Cited by: 20
Author(s): Joao Braga de Abreu Neto, Michael Frei
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms19030726

Functional Characterization of the Steroid Reductase Genes GmDET2a and GmDET2b from Glycine max
Cited by: 8
Author(s): Weige Huo, Bodi Li, Jiebing Kuang, Ping‐an He, Zhihao Xu, Jinxiang Wang
Software Mentions: 2
Published: over 8 years ago

10.1080/10872981.2019.1635844

Information within residency monthly evaluation forms at two institutions
Cited by: 0
Author(s): Christopher J. Cooper, Paulette Wehner, Cindy Dailey, Nanette O'Connor, James Kleshinski, Joseph I. Shapiro
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-13-564

Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group
Cited by: 16
Author(s): Edgar J. Scott, David W. Dyer
Software Mentions: 2
Published: about 14 years ago

10.3390/ijerph16101805

The Effects of Pavement Types on Soil Bacterial Communities across Different Depths
Cited by: 8
Author(s): Weiwei Yu, Yinhong Hu, Bowen Cui, Yuanyuan Chen, Xiaoke Wang
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-12-130

In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovine Escherichia coli- mastitis
Cited by: 88
Author(s): Bart Buitenhuis, Christine M. Røntved, Stefan McKinnon Edwards, K.L. Ingvartsen, Peter Sørensen
Software Mentions: 2
Published: over 15 years ago

10.3390/ijerph17197137

Markers Specific to Bacteroides fragilis Group Bacteria as Indicators of Anthropogenic Pollution of Surface Waters
Cited by: 6
Author(s): Sebastian Niestępski, Monika Harnisz, Ewa Korzeniewska, Adriana Osińska
Software Mentions: 2
Published: about 6 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 6 years ago

10.3390/ijerph18020563

The Prevalence of Virulent and Multidrug-Resistant Enterococci in River Water and in Treated and Untreated Municipal and Hospital Wastewater
Cited by: 17
Author(s): Anna Gotkowska-Płachta
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/4832189

Linking Complement C3 and B Cells in Nasal Polyposis
Cited by: 3
Author(s): Ulrike Werner, Axel Künstner, Maren Drenckhan, Ralph Pries, Karl‐Ludwig Bruchhage, Hauke Busch, Claus Bachert, Barbara Wollenberg
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.22197

Pseudogenes of annexin A2, novel prognosis biomarkers for diffuse gliomas
Cited by: 27
Author(s): Shuang Li, Hecun Zou, Yingying Shao, Ying Mei, Yuanda Cheng, Dongli Hu, Zhi‐Rong Tan, Hong‐Hao Zhou
Software Mentions: 2
Published: about 9 years ago

10.1186/s12864-015-1686-y

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
Cited by: 54
Author(s): Cecilia Lindskog, Jerker Linné, Linn Fagerberg, Björn M. Hallström, Carl Johan Sundberg, Maléne E. Lindholm, Mikael Huss, Caroline Kampf, Howard Choi, David A. Liem, Peipei Ping, Leif Väremo, Adil Mardinoğlu, Jens Nielsen, Erik Larsson, Fredrik Pontén, Mathias Uhlén
Software Mentions: 2
Published: over 11 years ago

10.1038/onc.2016.164

MicroRNA-101 regulated transcriptional modulator SUB1 plays a role in prostate cancer
Cited by: 56
Author(s): Balabhadrapatruni V. S. K. Chakravarthi, Moloy T. Goswami, Satya S. Pathi, Alyncia D. Robinson, Marcin Cieślik, Darshan S. Chandrashekar, Sumit Agarwal, Javed Siddiqui, Stephanie Daignault, Shannon Carskadon, Xiaojun Jing, Arul M. Chinnaiyan, Lakshmi P. Kunju, Nallasivam Palanisamy, Sooryanarayana Varambally
Software Mentions: 2
Published: over 10 years ago

10.1002/ece3.5838

Egg laying rather than host quality or host feeding experience drives habitat estimation in the parasitic waspNasonia vitripennis
Cited by: 2
Author(s): Mareike Koppik, Andra Thiel, Thomas S. Hoffmeister
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-019-6274-0

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Cited by: 10
Author(s): Matthew A. Nethery, Emily DeCrescenzo Henriksen, Katheryne V. Daughtry, Suzanne D. Johanningsmeier, Rodolphe Barrangou
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41388-021-01732-6

Proteasome 26S subunit, non-ATPases 1 (PSMD1) and 3 (PSMD3), play an oncogenic role in chronic myeloid leukemia by stabilizing nuclear factor-kappa B
Cited by: 20
Author(s): Alfonso E. Bencomo‐Alvarez, Andres J. Rubio, Idaly M. Olivas, Mayra A. Gonzalez, Rebecca Ellwood, Carme Ripoll Fiol, Christopher A. Eide, Joshua J. Lara, Christian Barreto‐Vargas, Luis F Jave-Suárez, Georgios Nteliopoulos, Alistair Reid, Dragana Milojković, Brian J. Druker, Jane F. Apperley, Jamshid S. Khorashad, Anna M. Eiring
Software Mentions: 2
Published: over 5 years ago

10.1111/liv.14692

The biological process of lysine‐tRNA charging is therapeutically targetable in liver cancer
Cited by: 8
Author(s): Ruyi Zhang, Lisanne Noordam, Xumin Ou, Bo Ma, Yunlong Li, Priyadip Das, Shaojun Shi, Jiaye Liu, Ling Wang, Pengfei Li, Monique M A Verstegen, D. Srinivasa Reddy, Luc J. W. van der Laan, Maikel P. Peppelenbosch, Jaap Kwekkeboom, Ron Smits
Software Mentions: 2
Published: about 6 years ago

10.26508/lsa.201900554

TRAIL-induced variation of cell signaling states provides nonheritable resistance to apoptosis
Cited by: 10
Author(s): Reema Baskar, Harris G. Fienberg, Zumana Khair, Patrícia Favaro, Samuel C. Kimmey, Douglas R. Green, Garry P. Nolan, Sylvia K. Plevritis, Sean C. Bendall
Software Mentions: 2
Published: about 7 years ago

10.3389/fvets.2021.692646

Prevalence and Risk Factors Associated With Antimicrobial Resistance in Bacteria Related to Bovine Respiratory Disease—A Broad Cross-Sectional Study of Beef Cattle at Entry Into Canadian Feedlots
Cited by: 10
Author(s): Sara Andrés-Lasheras, Reuben Ha, Rahat Zaheer, Catrione Lee, Calvin W. Booker, Craig Dorin, Joyce Van Donkersgoed, Rob Deardon, Sheryl Gow, Sherry J. Hannon, S. Hendrick, Michele Anholt, Tim A. McAllister
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-020-06999-9

Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)
Cited by: 14
Author(s): Bobo Song, Zikai Tang, Xiaolong Li, Jiaming Li, Mingyue Zhang, Kunkun Zhao, Hainan Liu, Shaoling Zhang, Jun Wu
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.23203

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Cited by: 171
Author(s): Sebastian Pott
Software Mentions: 2
Published: over 9 years ago

10.3389/fvets.2014.00019

Characterization of the Vaginal Microbiota of Ewes and Cows Reveals a Unique Microbiota with Low Levels of Lactobacilli and Near-Neutral pH
Cited by: 103
Author(s): Jeffrey Swartz, Medora Lachman, Kelsey Westveer, Thomas OʼNeill, T. W. Geary, R. W. Kott, J. G. Berardinelli, P. G. Hatfield, Jennifer M. Thomson, A. J. Roberts, Carl J. Yeoman
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0190199

Combined oral and topical antimicrobial therapy for male partners of women with bacterial vaginosis: Acceptability, tolerability and impact on the genital microbiota of couples - A pilot study
Cited by: 40
Author(s): Erica L Plummer, Lenka A Vodstrcil, Jennifer Danielewski, Gerald L Murray, Christopher K. Fairley, Suzanne M. Garland, Jane S Hocking, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0054732

The Carcinogenic Liver Fluke, Clonorchis sinensis: New Assembly, Reannotation and Analysis of the Genome and Characterization of Tissue Transcriptomes
Cited by: 71
Author(s): Yan Huang, Wenjun Chen, Xiaoyun Wang, Hailiang Liu, Yangyi Chen, Lei Guo, Fang Luo, Jiufeng Sun, Qiang Mao, Pei Liang, Zhizhi Xie, Chenhui Zhou, Yanli Tian, Xiaoli Lv, Lisha Huang, Juanjuan Zhou, Yue Hu, Ran Li, Fan Zhang, Huali Lei, Wenfang Li, Xuchu Hu, Chi Liang, Jin Xu, Xuerong Li, Xinbing Yu
Software Mentions: 2
Published: almost 14 years ago

10.26508/lsa.201800197

A role for MED14 and UVH6 in heterochromatin transcription upon destabilization of silencing
Cited by: 13
Author(s): Pierre Bourguet, Stève de Bossoreille, Leticia López-González, Marie-Noëlle Pouch-Pélissier, Ángeles Gómez-Zambrano, Anthony Devert, Thierry Pélissier, Romain Pogorelcnik, Isabelle Vaillant, Olivier Mathieu
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0169670

Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics
Cited by: 50
Author(s): Scott L. Hamilton, Cheryl A. Logan, Hamilton William Fennie, Susan M. Sogard, James Barry, April D. Makukhov, Lauren R. Tobosa, Kirsten Boyer, C. Lovera, Giacomo Bernardi
Software Mentions: 2
Published: almost 10 years ago

10.3389/fgene.2020.612256

Regulatory Dynamics of Cell Differentiation Revealed by True Time Series From Multinucleate Single Cells
Cited by: 2
Author(s): Anna Pretschner, Sophie Pabel, Markus Haas, Monika Heiner, Wolfgang Marwan
Software Mentions: 2
Published: almost 6 years ago

10.4155/fsoa-2018-0046

Profiling and bioinformatics analyses of differential circular RNA expression in prostate cancer cells
Cited by: 21
Author(s): Chunlei Zhang, Jun Xiong, Qi Yang, Ye Wang, Haoqing Shi, Quan Tian, Hai Huang, De-Pei Kong, Jian-Min Lv, Dan Liŭ, Xu Gao, Xiaoyuan Zi, Yinghao Sun
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2020.00045

Identification of Core Gene Expression Signature and Key Pathways in Colorectal Cancer
Cited by: 45
Author(s): Xiang Ding, Houyu Duan, Haitao Luo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0063251

Gene Expression Changes in the Colon Epithelium Are Similar to Those of Intact Colon during Late Inflammation in Interleukin-10 Gene Deficient Mice
Cited by: 9
Author(s): Anna E Russ, J. S. Peters, Warren C. McNabb, Matthew P. G. Barnett, Rachel C. Anderson, Zaneta Park, Shuotun Zhu, Paul Maclean, Wayne Young, Gordon Reynolds, Nicole C. Roy
Software Mentions: 2
Published: over 13 years ago

10.1186/s13071-016-1642-y

CAP protein superfamily members in Toxocara canis
Cited by: 6
Author(s): Andreas J. Stroehlein, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Andreas Hofmann, Paul W. Sternberg, Abdul Jabbar, Robin B. Gasser
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0164735

Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens
Cited by: 34
Author(s): Bruno Tilocca, Maren Witzig, M. Rodehutscord, Jana Seifert
Software Mentions: 2
Published: about 10 years ago

10.1534/g3.116.032490

Identification of Genes inCandida glabrataConferring Altered Responses to Caspofungin, a Cell Wall Synthesis Inhibitor
Cited by: 18
Author(s): Anne G. Rosenwald, Gaurav Arora, Rocco Ferrandino, Erica L. Gerace, Maedeh Mohammednetej, Waseem Nosair, Shemona Rattila, Amanda Zirzow Subic, Ronda J. Rolfes
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0120106

Potential Biomarkers of Fatigue Identified by Plasma Metabolome Analysis in Rats
Cited by: 39
Author(s): Satoshi Kume, Masayuki Yamato, Yasuhisa Tamura, Guanghua Jin, Masayuki Nakano, Yukiharu Miyashige, Akiyo Eguchi, Yasuhiro Ogata, Nobuhito Goda, Kazuhiro Iwaï, Emi Yamano, Yasuyoshi Watanabe, Tomoyoshi Soga, Yosky Kataoka
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms22031495

Comparative Analysis Identifies Similarities between the Human and Murine Microglial Sensomes
Cited by: 18
Author(s): Erik R. Abels, Lisa Nieland, Suzanne E. Hickman, Marike L D Broekman, Joseph El Khoury, Sybren L. N. Maas
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12935-020-1128-z

Establishment and characterization of patient-derived cancer models of malignant peripheral nerve sheath tumors
Cited by: 10
Author(s): Rieko Oyama, Fusako Kito, Mami Takahashi, Emi Hattori, Rei Noguchi, Yoko Takai, Marimu Sakumoto, Zhiwei Qiao, Shunichi Toki, Michio Sugawara, Yoshikazu Tanzawa, Eisuke Kobayashi, Fumihiko Nakatani, Shintaro Iwata, Akihiko Yoshida, Akira Kawai, Tadashi Kondo
Software Mentions: 2
Published: over 6 years ago

10.1186/ar4369

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0097690

Altered Expression of Circulating MicroRNA in Plasma of Patients with Primary Osteoarthritis and In Silico Analysis of Their Pathways
Cited by: 83
Author(s): Verónica M. Borgonio Cuadra, Norma Celia González-Huerta, Sandra Romero-Córdoba, Alfredo Hidalgo-Miranda, Antonio Miranda‐Duarte
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0129318

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane
Cited by: 81
Author(s): Lucas Mitsuo Taniguti, Patrícia Dayane Carvalho Schaker, Juliana Benevenuto, Leila Priscila Peters, Gabriela Ferreira Carvalho, Aristides Palhares, Maria Carolina Quecine, Filipe R. S. Nunes, Maria Carolina Pezzo Kmit, Alvan Wai, Georg Hausner, Karen S. Aitken, Paul J. Berkman, James A. Fraser, Paula Moolhuijzen, Luiz Lehmann Coutinho, Silvana Creste, Maria Lúcia Carneiro Vieira, João Paulo Kitajima, Cláudia Barros Monteiro-Vitorello
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0069790

Identification of Novel Adhesins of M. tuberculosis H37Rv Using Integrated Approach of Multiple Computational Algorithms and Experimental Analysis
Cited by: 26
Author(s): Sanjiv Kumar, Bhanwar Lal Puniya, Shahila Parween, Pradip Nahar, Srinivasan Ramachandran
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0096924

Rhythms and Community Dynamics of a Hydrothermal Tubeworm Assemblage at Main Endeavour Field – A Multidisciplinary Deep-Sea Observatory Approach
Cited by: 45
Author(s): Daphné Cuvelier, Pierre Legendre, Agathe Laës-Huon, Pierre‐Marie Sarradin, Jozée Sarrazin
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms22052452

A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis
Cited by: 11
Author(s): Suhyeon Park, Yumin Kim, Jibeom Lee, Jeong Yun Lee, Hail Kim, Sunjae Lee, Chang‐Myung Oh
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0139401

The Effects of Synthetic Estrogen Exposure on the Sexually Dimorphic Liver Transcriptome of the Sex-Role-Reversed Gulf Pipefish
Cited by: 15
Author(s): Emily Rose, Sarah P. Flanagan, Adam G. Jones
Software Mentions: 2
Published: about 11 years ago

10.1186/s12915-014-0086-0

A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.42989

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA
Cited by: 46
Author(s): Sasha A. Langley, Karen H. Miga, Gary H. Karpen, Charles H. Langley
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0242125

Unmet clinical needs for COVID-19 tests in UK health and social care settings
Cited by: 5
Author(s): Sara Graziadio, Samuel Urwin, Paola Cocco, Massimo Micocci, Amanda Winter, Yaling Yang, David Ashley Price, Mike Messenger, Joy Allen, Bethany Shinkins
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2019.01965

Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral Therapy
Cited by: 65
Author(s): Hemalatha Babu, Anoop T. Ambikan, Erin E. Gabriel, Sara Svensson Akusjärvi, Alangudi Natarajan Palaniappan, Vijila Sundaraj, Naveen Reddy Mupanni, Maike Sperk, Narayanaiah Cheedarla, Sridhar Ramaswamy, Srikanth Tripathy, Piotr Nowak, Luke Elizabeth Hanna, Ujjwal Neogi
Software Mentions: 2
Published: about 7 years ago

10.1111/tpj.13601

Live‐cell <scp>CRISPR</scp> imaging in plants reveals dynamic telomere movements
Cited by: 101
Author(s): Steven Dreißig, Simon Schiml, Patrick Schindele, Oda Weiss, Twan Rutten, Veit Schubert, Evgeny Gladilin, Michael Florian Mette, Holger Puchta, Andreas Houben
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0094325

Genes Influenced by the Non-Muscle Isoform of Myosin Light Chain Kinase Impact Human Cancer Prognosis
Cited by: 17
Author(s): Tong Zhou, Ting Wang, Joe G.N. Garcia
Software Mentions: 2
Published: over 12 years ago

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Papers Mentioning gplots 2,122