cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s12915-014-0086-0

A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: almost 12 years ago

10.3390/microorganisms9061123

Pan-Genome Analysis Reveals Host-Specific Functional Divergences in Burkholderia gladioli
Cited by: 9
Author(s): Hyun‐Hee Lee, Jung–Wook Park, Hyejung Jung, Young-Su Seo
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8121880

Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria
Cited by: 8
Author(s): Marcela Hernández, Blanca Vera-Gargallo, Marcela Calabi-Floody, Gary M. King, Ralf Conrad, Christoph C. Tebbe
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms8081105

Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer
Cited by: 14
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Mastaneh Afshar, Anja Poehlein, Lesley A. Ogilvie, Bo Söderquist, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-018-0475-7

Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
Cited by: 110
Author(s): Efrem S. Lim, Cynthia Rodríguez, Lori R. Holtz
Software Mentions: 2
Published: over 8 years ago

10.3389/fmolb.2021.715765

The Specific NLRP3 Antagonist IFM-514 Decreases Fibrosis and Inflammation in Experimental Murine Non-Alcoholic Steatohepatitis
Cited by: 12
Author(s): Sandra Torres, Maximilian Joseph Brol, Fernando Magdaleno, Robert Schierwagen, Frank Erhard Uschner, Sabine Klein, Cristina Ortiz, Olaf Tyc, Nadine Bachtler, James Stunden, Damien Bertheloot, Ana Kitanovic, Brian Sanchez, Jacob E. Schrum, William Roush, Luigi Franchi, Kate Byth, Eicke Latz, Jonel Trebicka
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-017-0364-5

Comparing microbiotas in the upper aerodigestive and lower respiratory tracts of lambs
Cited by: 20
Author(s): Laura Glendinning, David Collie, Steven H. Wright, Kenny Rutherford, Gerry McLachlan
Software Mentions: 2
Published: almost 9 years ago

10.1186/2049-2618-1-27

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
Cited by: 127
Author(s): Katherine E. Price, Thomas H. Hampton, Alex H. Gifford, Emily L. Dolben, Deborah A. Hogan, Hilary G. Morrison, Mitchell L. Sogin, George A. O’Toole
Software Mentions: 2
Published: almost 13 years ago

10.1186/s40168-018-0508-2

The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always
Cited by: 38
Author(s): Johan Bengtsson‐Palme
Software Mentions: 2
Published: about 8 years ago

10.3389/fnmol.2017.00039

Mapping Gene Expression in Excitatory Neurons during Hippocampal Late-Phase Long-Term Potentiation
Cited by: 46
Author(s): Patrick B. Chen, Riki Kawaguchi, Charles Blum, Jennifer M. Achiro, Giovanni Coppola, Thomas J. O’Dell, Kelsey C. Martin
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-016-1404-z

ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-017-0271-9

Uncovering the trimethylamine-producing bacteria of the human gut microbiota
Cited by: 300
Author(s): Silke Rath, B. Heidrich, Dietmar H. Pieper, Marius Vital
Software Mentions: 2
Published: over 9 years ago

10.1099/mic.0.2006/000562-0

A new environmentally resistant cell type from Dictyostelium
Cited by: 6
Author(s): Ioannis Serafimidis, Gareth Bloomfield, Jason Skelton, Alasdair Ivens, Robert R. Kay
Software Mentions: 2
Published: over 19 years ago

10.3389/fnut.2018.00036

Metabolomics and Ionomics of Potato Tuber Reveals an Influence of Cultivar and Market Class on Human Nutrients and Bioactive Compounds
Cited by: 36
Author(s): Jacqueline M. Chaparro, David G. Holm, Corey D. Broeckling, Jessica E. Prenni, Adam L. Heuberger
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2020.00829

High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: about 6 years ago

10.1002/mbo3.230

Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H 2 18 O
Cited by: 19
Author(s): Elizabeth A. Rettedal, Volker S. Brözel
Software Mentions: 2
Published: over 11 years ago

10.3389/fonc.2018.00070

Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma
Cited by: 38
Author(s): Uwe Möginger, Sonja Grunewald, René Hennig, Chu-Wei Kuo, Falko Schirmeister, Harald Voth, Erdmann Rapp, Kay‐Hooi Khoo, Peter H. Seeberger, Jan‐Christoph Simon, Daniel Kolarich
Software Mentions: 2
Published: over 8 years ago

10.1002/mbo3.330

Bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea
Cited by: 62
Author(s): Qi Ye, Ying Wu, Zhuoyi Zhu, Xiaona Wang, Zhongqiao Li, Jing Zhang
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms20123041

Dissecting the Genetic Architecture of Seed Protein and Oil Content in Soybean from the Yangtze and Huaihe River Valleys Using Multi-Locus Genome-Wide Association Studies
Cited by: 21
Author(s): Shuguang Li, Haifeng Xu, Jason Yang, Tuanjie Zhao
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20235911

Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice Seedlings
Cited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2020.01421

Analysis of Differentially Expressed Long Non-coding RNAs and the Associated TF-mRNA Network in Tongue Squamous Cell Carcinoma
Cited by: 6
Author(s): Mi Zhang, Zexi Chen, Sihui Zhang, Ling Wu, Yinghui Jie, Ying Liao, Yue Huang, Chen Chen Jiang, Bin Shi
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21010239

Cell Wall Proteome of Wheat Grain Endosperm and Outer Layers at Two Key Stages of Early Development
Cited by: 9
Author(s): Mehdi Cherkaoui, Virginie Lollier, Audrey Geairon, Axelle Bouder, Colette Larré, Hélène Rogniaux, Élisabeth Jamet, Fabienne Guillon, Mathilde Francin-Allami
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2018.00258

Breathomics for Assessing the Effects of Treatment and Withdrawal With Inhaled Beclomethasone/Formoterol in Patients With COPD
Cited by: 25
Author(s): Paolo Montuschi, Giuseppe Santini, Nadia Mores, Alessia Vignoli, Francesco Montorsi, Rugia Shoreh, Leonardo Tenori, Gina Zini, Leonello Fuso, Chiara Mondino, Corrado Di Natale, A. D’Amico, Claudio Luchinat, Peter J. Barnes, Tim Higenbottam
Software Mentions: 2
Published: over 8 years ago

10.3389/fphar.2021.670785

Co-Treatment With Verapamil and Curcumin Attenuates the Behavioral Alterations Observed in Williams–Beuren Syndrome Mice by Regulation of MAPK Pathway and Microglia Overexpression
Cited by: 5
Author(s): Paula Ortiz‐Romero, Alejandro González-Simón, Gustavo Egea, Luis A. Pérez‐Jurado, Victoria Campuzano
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-015-0656-3

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
Cited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: about 11 years ago

10.1186/s12859-017-1945-9

Explorative visual analytics on interval-based genomic data and their metadata
Cited by: 4
Author(s): Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2019.00261

Arginine Vasotocin and Cortisol Co-regulate Vasotocinergic, Isotocinergic, Stress, and Thyroid Pathways in the Gilthead Sea Bream (Sparus aurata)
Cited by: 11
Author(s): Juan Antonio Martos-Sitcha, Laura Cádiz, Magdalena Gozdowska, Ewa Kulczykowska, Gonzalo Martínez‐Rodríguez, Juan Miguel Mancera
Software Mentions: 2
Published: over 7 years ago

10.1186/s12934-021-01602-6

Superior production of heavy pamamycin derivatives using a bkdR deletion mutant of Streptomyces albus J1074/R2
Cited by: 6
Author(s): Lars Gläser, Martin Kuhl, Julian Stegmüller, Christian Rückert, Maksym Myronovskyi, Jörn Kalinowski, Andriy Luzhetskyy, Christoph Wittmann
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2016.01842

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Cited by: 26
Author(s): Jinlong Zhang, Jiaxue Wang, Wei Jiang, Juge Liu, Songnan Yang, Junyi Gai, Yan Li
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2018.00264

Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: over 8 years ago

10.15698/mic2021.09.760

Landscapes and bacterial signatures of mucosa-associated intestinal microbiota in Chilean and Spanish patients with inflammatory bowel disease
Cited by: 10
Author(s): Nayaret Chamorro, David A. Montero, Pablo Gallardo, Mauricio J. Farfán, Mauricio Contreras, Marjorie De la Fuente, Karen Dubois, Marcela A. Hermoso, Rodrigo Quera, Marjorie Pizarro-Guajardo, Daniel Paredes-Sabja, Daniel Ginard, Ramon Rosselló‐Móra, Roberto Vidal
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2016.01958

Global Scale Transcriptional Profiling of Two Contrasting Barley Genotypes Exposed to Moderate Drought Conditions: Contribution of Leaves and Crowns to Water Shortage Coping Strategies
Cited by: 12
Author(s): Pavel Svoboda, Anna Janská, Vojtěch Spiwok, Ilja Tom Prášil, Klára Kosová, Pavel Vítámvás, Jaroslava Ovesná
Software Mentions: 2
Published: over 9 years ago

10.1111/1751-7915.12342

Use of mulberry–soybean intercropping in salt–alkali soil impacts the diversity of the soil bacterial community
Cited by: 62
Author(s): Xin Li, Meiling Sun, Huihui Zhang, Nan Xu, Sun Guang-yu
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.00914

Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato
Cited by: 48
Author(s): Kai Zhang, Zhengdan Wu, Daobin Tang, Kai Luo, Huixiang Lu, Yingying Liu, Jie Dong, Xin Wang, Changwen Lv, Jichun Wang, Kun Lü
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: almost 11 years ago

10.3390/microarrays4040630

Integrating Colon Cancer Microarray Data: Associating Locus-Specific Methylation Groups to Gene Expression-Based Classifications
Cited by: 3
Author(s): Ana Barat, Heather J. Ruskin, Annette T. Byrne, Jochen H M Prehn
Software Mentions: 2
Published: almost 11 years ago

10.1007/s11306-018-1328-x

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects
Cited by: 18
Author(s): Parastoo Fazelzadeh, Roland W. J. Hangelbroek, Peter J. Joris, Casper G. Schalkwijk, Diederik Esser, Lydia A. Afman, Thomas Hankemeier, Doris M. Jacobs, Velitchka V. Mihaleva, Sander Kersten, John van Duynhoven, Mark V. Boekschoten
Software Mentions: 2
Published: over 8 years ago

10.1007/s11306-016-1120-8

Loss of ncm5 and mcm5 wobble uridine side chains results in an altered metabolic profile
Cited by: 11
Author(s): Tony Karlsborn, A. K. M. Firoj Mahmud, Hasan Tükenmez, Andeŕs S. Byström
Software Mentions: 2
Published: almost 10 years ago

10.1007/s11306-019-1599-x

Metabolomics: a search for biomarkers of visceral fat and liver fat content
Cited by: 19
Author(s): Sebastiaan C. Boone, Dennis O. Mook‐Kanamori, Frits R. Rosendaal, Martin den Heijer, Hildo J. Lamb, Albert de Roos, Saskia le Cessie, Ko Willems van Dijk, Renée de Mutsert
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2021.716955

The Haplotype-Based Analysis of Aegilops tauschii Introgression Into Hard Red Winter Wheat and Its Impact on Productivity Traits
Cited by: 6
Author(s): Moses Nyine, Elina Adhikari, Marshall Clinesmith, Robert M. Aiken, Bliss Betzen, Wei Wang, Dwight Davidson, Zitong Yu, Yuanwen Guo, Fei He, Alina Akhunova, Katherine Jordan, Allan K. Fritz, Eduard Akhunov
Software Mentions: 2
Published: about 5 years ago

10.1007/s11306-019-1564-8

A large-scale analysis of targeted metabolomics data from heterogeneous biological samples provides insights into metabolite dynamics
Cited by: 47
Author(s): Ho‐Joon Lee, Daniel M. Kremer, Peter Sajjakulnukit, Li Zhang, Costas A. Lyssiotis
Software Mentions: 2
Published: about 7 years ago

10.3390/metabo11070427

Primary Metabolite Profile Changes in Coffea spp. Promoted by Single and Combined Exposure to Drought and Elevated CO2 Concentration
Cited by: 12
Author(s): Ana Margarida Rodrigues, Tiago F. Jorge, Sonia Osorio, Delphine M. Pott, Fernando C. Lidon, Fábio M. DaMatta, Isabel Marques, Ana I. Ribeiro‐Barros, José C. Ramalho, Carla António
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2019.01323

Transcriptome Analysis of the Hierarchical Response of Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity Stress
Cited by: 13
Author(s): Minoru Ueda, Atsushi Matsui, S. Watanabe, Makoto Kobayashi, Kazuki Saito, Maho Tanaka, Junko Ishida, Miyako Kusano, Mitsunori Seo, Motoaki Seki
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21124305

Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng
Cited by: 4
Author(s): Li Liu, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-017-1637-5

Drug repositioning for enzyme modulator based on human metabolite-likeness
Cited by: 10
Author(s): Yoon Hyeok Lee, Hojae Choi, Seongyong Park, Boah Lee, Gwan‐Su Yi
Software Mentions: 2
Published: over 9 years ago

10.5713/ajas.19.0221

Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 6 years ago

10.1080/10872981.2019.1635844

Information within residency monthly evaluation forms at two institutions
Cited by: 0
Author(s): Christopher J. Cooper, Paulette Wehner, Cindy Dailey, Nanette O'Connor, James Kleshinski, Joseph I. Shapiro
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21197199

Transcriptional and Metabolic Profiling of Potato Plants Expressing a Plastid-Targeted Electron Shuttle Reveal Modulation of Genes Associated to Drought Tolerance by Chloroplast Redox Poise
Cited by: 11
Author(s): Juan José Pierella Karlusich, Rocío C. Arce, Fahimeh Shahinnia, Sophia Sonnewald, Uwe Sonnewald, Matías D. Zurbriggen, Mohammad‐Reza Hajirezaei, Néstor Carrillo
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21218210

Comparative Ubiquitome Analysis under Heat Stress Reveals Diverse Functions of Ubiquitination in Saccharina japonica
Cited by: 7
Author(s): Pengyan Zhang, Fuli Liu, Siqing Chen, Zhourui Liang, Wenjun Wang, Xiuyun Sun
Software Mentions: 2
Published: almost 6 years ago

10.1111/liv.14692

The biological process of lysine‐tRNA charging is therapeutically targetable in liver cancer
Cited by: 8
Author(s): Ruyi Zhang, Lisanne Noordam, Xumin Ou, Bo Ma, Yunlong Li, Priyadip Das, Shaojun Shi, Jiaye Liu, Ling Wang, Pengfei Li, Monique M A Verstegen, D. Srinivasa Reddy, Luc J. W. van der Laan, Maikel P. Peppelenbosch, Jaap Kwekkeboom, Ron Smits
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2015.01260

Microarray Meta-Analysis Focused on the Response of Genes Involved in Redox Homeostasis to Diverse Abiotic Stresses in Rice
Cited by: 20
Author(s): Joao Braga de Abreu Neto, Michael Frei
Software Mentions: 2
Published: over 10 years ago

10.1186/s13075-017-1474-y

VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: over 8 years ago

10.26508/lsa.201900554

TRAIL-induced variation of cell signaling states provides nonheritable resistance to apoptosis
Cited by: 10
Author(s): Reema Baskar, Harris G. Fienberg, Zumana Khair, Patrícia Favaro, Samuel C. Kimmey, Douglas R. Green, Garry P. Nolan, Sylvia K. Plevritis, Sean C. Bendall
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21249380

Structural Diversity and Highly Specific Host-Pathogen Transcriptional Regulation of Defensin Genes Is Revealed in Tomato
Cited by: 5
Author(s): Nikolaos Nikoloudakis, Polyxeni Pappi, Emmanouil A. Markakis, Spyridoula N. Charova, Dimitrios Fanourakis, Konstantinos Paschalidis, Costas Delis, Emmanuel A. Tzortzakakis, Georgios Tsaniklidis
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.201800197

A role for MED14 and UVH6 in heterochromatin transcription upon destabilization of silencing
Cited by: 13
Author(s): Pierre Bourguet, Stève de Bossoreille, Leticia López-González, Marie-Noëlle Pouch-Pélissier, Ángeles Gómez-Zambrano, Anthony Devert, Thierry Pélissier, Romain Pogorelcnik, Isabelle Vaillant, Olivier Mathieu
Software Mentions: 2
Published: over 7 years ago

10.3389/fvets.2021.692646

Prevalence and Risk Factors Associated With Antimicrobial Resistance in Bacteria Related to Bovine Respiratory Disease—A Broad Cross-Sectional Study of Beef Cattle at Entry Into Canadian Feedlots
Cited by: 10
Author(s): Sara Andrés-Lasheras, Reuben Ha, Rahat Zaheer, Catrione Lee, Calvin W. Booker, Craig Dorin, Joyce Van Donkersgoed, Rob Deardon, Sheryl Gow, Sherry J. Hannon, S. Hendrick, Michele Anholt, Tim A. McAllister
Software Mentions: 2
Published: about 5 years ago

10.3389/fvets.2014.00019

Characterization of the Vaginal Microbiota of Ewes and Cows Reveals a Unique Microbiota with Low Levels of Lactobacilli and Near-Neutral pH
Cited by: 103
Author(s): Jeffrey Swartz, Medora Lachman, Kelsey Westveer, Thomas OʼNeill, T. W. Geary, R. W. Kott, J. G. Berardinelli, P. G. Hatfield, Jennifer M. Thomson, A. J. Roberts, Carl J. Yeoman
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12935-020-1128-z

Establishment and characterization of patient-derived cancer models of malignant peripheral nerve sheath tumors
Cited by: 10
Author(s): Rieko Oyama, Fusako Kito, Mami Takahashi, Emi Hattori, Rei Noguchi, Yoko Takai, Marimu Sakumoto, Zhiwei Qiao, Shunichi Toki, Michio Sugawara, Yoshikazu Tanzawa, Eisuke Kobayashi, Fumihiko Nakatani, Shintaro Iwata, Akihiko Yoshida, Akira Kawai, Tadashi Kondo
Software Mentions: 2
Published: over 6 years ago

10.4155/fsoa-2018-0046

Profiling and bioinformatics analyses of differential circular RNA expression in prostate cancer cells
Cited by: 21
Author(s): Chunlei Zhang, Jun Xiong, Qi Yang, Ye Wang, Haoqing Shi, Quan Tian, Hai Huang, De-Pei Kong, Jian-Min Lv, Dan Liŭ, Xu Gao, Xiaoyuan Zi, Yinghao Sun
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.116.032490

Identification of Genes inCandida glabrataConferring Altered Responses to Caspofungin, a Cell Wall Synthesis Inhibitor
Cited by: 18
Author(s): Anne G. Rosenwald, Gaurav Arora, Rocco Ferrandino, Erica L. Gerace, Maedeh Mohammednetej, Waseem Nosair, Shemona Rattila, Amanda Zirzow Subic, Ronda J. Rolfes
Software Mentions: 2
Published: almost 10 years ago

10.1093/brain/awz291

Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia
Cited by: 73
Author(s): Frédéric M. Vaz, John H McDermott, Mariëlle Alders, Saskia B. Wortmann, Stefan Kölker, Mia L. Pras‐Raves, Martin A. T. Vervaart, Henk van Lenthe, Angela C. M. Luyf, Hyung L. Elfrink, Kay Metcalfe, Sara Cuvertino, Peter E. Clayton, Rebecca Yarwood, Martin Lowe, Simon C. Lovell, R. Curtis Rogers, Deciphering Developmental Disorders Study, Antoine H. C. van Kampen, J. P. N. Ruiter, Ronald J. A. Wanders, Sacha Ferdinandusse, Michel van Weeghel, Marc Engelen, Siddharth Banka
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms22031495

Comparative Analysis Identifies Similarities between the Human and Murine Microglial Sensomes
Cited by: 18
Author(s): Erik R. Abels, Lisa Nieland, Suzanne E. Hickman, Marike L D Broekman, Joseph El Khoury, Sybren L. N. Maas
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22052452

A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis
Cited by: 11
Author(s): Suhyeon Park, Yumin Kim, Jibeom Lee, Jeong Yun Lee, Hail Kim, Sunjae Lee, Chang‐Myung Oh
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10080612

Identification of Key Genes and Pathways in Pancreatic Cancer Gene Expression Profile by Integrative Analysis
Cited by: 16
Author(s): Wei Lü, Ning Li, Fuyuan Liao
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms22062936

Overexpression of AtBBD1, Arabidopsis Bifunctional Nuclease, Confers Drought Tolerance by Enhancing the Expression of Regulatory Genes in ABA-Mediated Drought Stress Signaling
Cited by: 10
Author(s): Amdadul Huque, Wonmi So, Minsoo Noh, Min Kyoung You, Jeong Sheop Shin
Software Mentions: 2
Published: over 5 years ago

10.1186/s13068-017-0720-5

Development of a genetically programed vanillin-sensing bacterium for high-throughput screening of lignin-degrading enzyme libraries
Cited by: 24
Author(s): Barindra Sana, Burton K. Chia, Sarada Raghavan, R. Balamurugan, Niranjan Nagarajan, Jayasree Seayad, Farid J. Ghadessy
Software Mentions: 2
Published: over 9 years ago

10.3390/genes12040602

Responses to Mineral Supplementation and Salmon Lice (Lepeophtheirus salmonis) Infestation in Skin Layers of Atlantic Salmon (Salmo salar L.)
Cited by: 4
Author(s): Lene Sveen, Aleksei Krasnov, Gerrit Timmerhaus, André Sture Bogevik
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20204171

Ddhd1 knockout mouse as a model of locomotive and physiological abnormality in familial spastic paraplegia
Cited by: 2
Author(s): Takuya Morikawa, Hiroaki Ohishi, Kengo Kosaka, Tomofumi Shimojo, Akihiro Nagano, Itsuki Taniguchi, Ryuta Fujioka, Kousuke Moriyama, Motoko Unoki, Masatomo Takahashi, Motonao Nakao, Yoshihiro Izumi, Takeshi Bamba, Hidetada Sasaki, Satoshi Miura, Hiroki Shibata
Software Mentions: 2
Published: over 5 years ago

10.1186/s12931-020-1317-2

Cigarette smoke and electronic cigarettes differentially activate bronchial epithelial cells
Cited by: 33
Author(s): Christian Herr, Κωνσταντίνος Τσίτουρας, Julia Niederstraßer, Christina Backes, Christoph Beißwenger, Lü Dong, Loïc Guillot, Andreas Keller, Robert Bals
Software Mentions: 2
Published: over 6 years ago

10.1186/s12977-014-0101-0

Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation
Cited by: 11
Author(s): Donglai Liu, Tao Zuo, Bhavna Hora, Hongshuo Song, Wei Kong, Xianghui Yu, Nilu Goonetilleke, Tanmoy Bhattacharya, Alan S. Perelson, Barton F. Haynes, Andrew J. McMichael, Feng Gao
Software Mentions: 2
Published: almost 12 years ago

10.1042/BSR20191554

Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA–miRNA–mRNA networks and Cox regression models
Cited by: 14
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Wei Hua Jia, Qi Song, Changgang Sun
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/3268505

The Role of Overexpressed Apolipoprotein AV in Insulin-Resistant Hepatocytes
Cited by: 0
Author(s): Wang Zhao, Yaqiong Liu, Xiao‐Bo Liao, Shui‐Ping Zhao
Software Mentions: 2
Published: over 6 years ago

10.1038/srep09103

Tissue- and time-dependent transcription in Ixodes ricinus salivary glands and midguts when blood feeding on the vertebrate host
Cited by: 87
Author(s): Michail Kotsyfakis, Alexandra Schwarz, Jan Erhart, José M. C. Ribeiro
Software Mentions: 2
Published: over 11 years ago

10.1038/srep10189

Variation in koala microbiomes within and between individuals: effect of body region and captivity status
Cited by: 72
Author(s): Niccolò Alfano, Alexandre Courtiol, Hanna Vielgrader, Peter Timms, Alfred L. Roca, Alex D. Greenwood
Software Mentions: 2
Published: over 11 years ago

10.3390/biology10080782

Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Cited by: 105
Author(s): Zaki Saati‐Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 5 years ago

10.1038/srep13098

Characterisation of peripheral blood mononuclear cell microRNA in hepatitis B-related acute-on-chronic liver failure
Cited by: 21
Author(s): Wenchao Ding, Jiaojiao Xin, Liangliang Jiang, Qian Zhou, Tianzhou Wu, Dongyan Shi, Biaoyang Lin, Lanjuan Li, Jun Li
Software Mentions: 2
Published: about 11 years ago

10.3390/biology8020021

Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
Cited by: 1
Author(s): Waraporn Kraitavin, Kazutoshi Yoshitake, Yoji Igarashi, Susumu Mitsuyama, Shigeharu Kinoshita, Daisuke Kambayashi, Shugo Watabe, Shuichi Asakawa
Software Mentions: 2
Published: over 7 years ago

10.1186/ar4369

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms22073752

Molecular Analysis of ZNF71 KRAB in Non-Small-Cell Lung Cancer
Cited by: 12
Author(s): Qing Ye, Rehab F. Mohamed, Duaa Dukhlallah, Marieta Gencheva, Gangqing Hu, Martin C. Pearce, Siva Kumar Kolluri, Clay B. Marsh, Timothy D. Eubank, Alexey V. Ivanov, Nancy Lan Guo
Software Mentions: 2
Published: over 5 years ago

10.1038/srep17551

Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog
Cited by: 14
Author(s): Yong Shao, Lijun Wang, Li Zhong, Mingsheng Hong, Hong‐Man Chen, Robert W. Murphy, Dong‐Dong Wu, Yaping Zhang, Jing Che
Software Mentions: 2
Published: over 10 years ago

10.1007/s00204-021-03008-0

Integration of transcriptome analysis with pathophysiological endpoints to evaluate cigarette smoke toxicity in an in vitro human airway tissue model
Cited by: 8
Author(s): Rui Xiong, Yue Wu, Qiangen Wu, Levan Muskhelishvili, Kelly J. Davis, Priya Tripathi, Ying Chen, Tao Chen, Matthew Bryant, Hans Rosenfeldt, Sheila M. Healy, Xuefei Cao
Software Mentions: 2
Published: over 5 years ago

10.1038/srep19926

Quantitative Analysis of Global Proteome and Lysine Acetylome Reveal the Differential Impacts of VPA and SAHA on HL60 Cells
Cited by: 30
Author(s): Xiaoyu Zhu, Xin Liu, Zhongyi Cheng, Jun Zhu, Lei Xu, Fengsong Wang, Wulin Qi, Jiawei Yan, Ning Liu, Zimin Sun, Huilan Liu, Xiaojun Peng, Yingchan Hao, Zheng Nan, Qiulian Wu
Software Mentions: 2
Published: over 10 years ago

10.1186/s40659-020-00299-y

Microarray profiling and functional analysis of differentially expressed plasma exosomal circular RNAs in Graves’ disease
Cited by: 16
Author(s): Ying Sun, Wei Wang, Yuxiao Tang, Daping Wang, Liang Li, Na Min, Guantong Jiang, Qian Li, Shulin Chen, Jin Zhou
Software Mentions: 2
Published: about 6 years ago

10.1038/srep21764

Succinyl-proteome profiling of a high taxol containing hybrid Taxus species (Taxus × media) revealed involvement of succinylation in multiple metabolic pathways
Cited by: 31
Author(s): Chenjia Shen, Jie Xue, Tao Sun, Hong Guo, Lei Zhang, Yijun Meng, Huizhong Wang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep22637

Age-associated metabolic dysregulation in bone marrow-derived macrophages stimulated with lipopolysaccharide
Cited by: 28
Author(s): Fan Fei, Keith M. Lee, Brian E. McCarry, Dawn M. E. Bowdish
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26852

Genome-wide differential expression of genes and small RNAs in testis of two different porcine breeds and at two different ages
Cited by: 24
Author(s): Li Yao, Jialian Li, Fang Cui, Liang Shi, Jinyun Tan, Yan Xiong, Bin Fan, Changchun Li
Software Mentions: 2
Published: over 10 years ago

10.1038/srep29313

Proteome-wide analysis of lysine acetylation in the plant pathogen Botrytis cinerea
Cited by: 38
Author(s): Binna Lv, Qiwen Yang, Delong Li, Wenxing Liang, Limin Song
Software Mentions: 2
Published: about 10 years ago

10.1186/1752-0509-5-202

A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections
Cited by: 18
Author(s): Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze
Software Mentions: 2
Published: over 14 years ago

10.1038/srep31576

First Comprehensive Proteome Analyses of Lysine Acetylation and Succinylation in Seedling Leaves of Brachypodium distachyon L.
Cited by: 60
Author(s): Shoumin Zhen, Xiong Deng, Jian Wang, Guijie Zhu, Hui Cao, Linlin Yuan, Yueming Yan
Software Mentions: 2
Published: about 10 years ago

10.1128/AEM.00515-17

Microbiota in Exhaled Breath Condensate and the Lung
Cited by: 14
Author(s): Laura Glendinning, Steven H. Wright, Peter Tennant, Andrew C. Gill, David Collie, Gerry McLachlan
Software Mentions: 2
Published: about 9 years ago

10.1038/srep33102

Pentoxifylline ameliorates non-alcoholic fatty liver disease in hyperglycaemic and dyslipidaemic mice by upregulating fatty acid β-oxidation
Cited by: 23
Author(s): Jia-Hung Ye, Jung Chao, Mau‐Song Chang, Wen-Huang Peng, Hao-Yuan Cheng, Jiunn‐Wang Liao, Li-Heng Pao
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12918-015-0159-x

Genome-scale resources for Thermoanaerobacterium saccharolyticum
Cited by: 22
Author(s): Devin H. Currie, Babu Raman, Christopher M. Gowen, Timothy J. Tschaplinski, Miriam Land, Steven D. Brown, Sean F. Covalla, Dawn M. Klingeman, Zamin K. Yang, Nancy L. Engle, C. M. Johnson, Miguel Rodríguez, Aubie Shaw, William R. Kenealy, Lee R. Lynd, Stephen S. Fong, Jonathan R. Mielenz, Brian H. Davison, David A. Hogsett, Christopher D. Herring
Software Mentions: 2
Published: about 11 years ago

10.1186/s12918-018-0639-x

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain
Cited by: 24
Author(s): Steven Cogill, Anand Srivastava, Mary Qu Yang, Liangjiang Wang
Software Mentions: 2
Published: over 7 years ago

10.1038/srep36695

RNA-seq analyses of the midgut from blood- and serum-fed Ixodes ricinus ticks
Cited by: 67
Author(s): Jan Perner, Jan Provazník, Jana Schrenková, Veronika Urbanová, José M. C. Ribeiro, Petr Kopáček
Software Mentions: 2
Published: almost 10 years ago

10.1186/1756-0500-7-761

Expression level of a flavonoid 3′-hydroxylase gene determines pathogen-induced color variation in sorghum
Cited by: 20
Author(s): Hiroshi Mizuno, Takayuki Yazawa, Shigemitsu Kasuga, Yuji Sawada, Jun Ogata, Tsuyu Ando, Hajime Kanamori, Jun‐ichi Yonemaru, Jianzhong Wu, Masami Yokota Hirai, Takashi Matsumoto, Hiroyuki Kawahigashi
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep37900

Survey of the green picoalga Bathycoccus genomes in the global ocean
Cited by: 51
Author(s): Thomas Vannier, Jade Leconte, Yoann Seeleuthner, Samuel Mondy, Éric Pelletier, Jean‐Marc Aury, Colomban de Vargas, Michael E. Sieracki, Daniele Iudicone, Daniel Vaulot, Patrick Wincker, Olivier Jaillon
Software Mentions: 2
Published: over 9 years ago

10.1186/1756-0500-7-440

Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: about 12 years ago

10.1038/srep42062

Proteome and Acetylome Analysis Identifies Novel Pathways and Targets Regulated by Perifosine in Neuroblastoma
Cited by: 13
Author(s): Xiao Gu, Zhongyan Hua, Yuzhu Dong, Yue Zhan, Xiaowen Zhang, Wei Tian, Zhihui Liu, Carol J. Thiele, Zhijie Li
Software Mentions: 2
Published: over 9 years ago

10.1038/srep41234

Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community
Cited by: 50
Author(s): Lu Shi, Nanshan Du, Sheng Shu, Jian Sun, Shuzhan Li, Shirong Guo
Software Mentions: 2
Published: over 9 years ago

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