cran: gplots | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0088584

Effect of Diet on Expression of Genes Involved in Lipid Metabolism, Oxidative Stress, and Inflammation in Mouse Liver–Insights into Mechanisms of Hepatic Steatosis
Cited by: 73
Author(s): Helen J. Renaud, Julia Yue Cui, Hong Lü, Curtis D. Klaassen
Software Mentions: 2
Published: over 12 years ago

10.1007/s00592-017-1059-x

Pancreatic imaging using an antibody fragment targeting the zinc transporter type 8: a direct comparison with radio-iodinated Exendin-4
Cited by: 10
Author(s): Olof Eriksson, Olle Korsgren, Ram Kumar Selvaraju, Marjorie Mollaret, Yann de Boysson, Fabrice Chimienti, Mohamed Altai
Software Mentions: 2
Published: about 9 years ago

10.1002/advs.202003049

Modeling Heterogeneity of Triple‐Negative Breast Cancer Uncovers a Novel Combinatorial Treatment Overcoming Primary Drug Resistance
Cited by: 11
Author(s): Fabienne Lamballe, Fahmida Ahmad, Yaron Vinik, Olivier Castellanet, Fabrice Daian, Anna Katharina Müller, Ulrike A. Köhler, Anne Laure Bailly, Emmanuelle Josselin, Rémy Castellano, Christelle Cayrou, Emmanuelle Charafe‐Jauffret, Gordon B. Mills, Vincent Géli, Jean-Paul Borg, Sima Lev, Flavio Maina
Software Mentions: 2
Published: almost 6 years ago

10.1155/2016/3605302

A Cross-Study Biomarker Signature of Human Bronchial Epithelial Cells Infected with Respiratory Syncytial Virus
Cited by: 7
Author(s): Luiz Gustavo Gardinassi
Software Mentions: 2
Published: almost 11 years ago

10.18632/aging.103783

Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: about 6 years ago

10.1111/acel.12472

Mitochondrial‐targeted catalase is good for the old mouse proteome, but not for the young: ‘reverse’ antagonistic pleiotropy?
Cited by: 31
Author(s): Nathan Basisty, Dao Fu Dai, Arni Gagnidze, Lemuel Gitari, Jeanne Fredrickson, Yvonne Maina, Richard P. Beyer, Mary J. Emond, Edward J. Hsieh, Michael J. MacCoss, George M. Martin, Peter S. Rabinovitch
Software Mentions: 2
Published: over 10 years ago

10.3390/ani10030534

A Novel Therapeutic Reagent, KA-1002 for Alleviating Lysophosphatidic Acid-Mediated Inflammation Related Gene Expression in Swine Macrophages
Cited by: 0
Author(s): Hyeon-Jeong Hwang, Tamina Park, Miok Kim, Hee-Su Shin, Woo-Yeon Hwang, Yong Ki Min, Sukgil Song, Daeui Park, Chang Hoon Lee
Software Mentions: 2
Published: over 6 years ago

10.3390/antibiotics10080886

Impact of Chronic Tetracycline Exposure on Human Intestinal Microbiota in a Continuous Flow Bioreactor Model
Cited by: 7
Author(s): Youngbeom Ahn, Ji Young Jung, Ohgew Kweon, Brian T Veach, Sangeeta Khare, Kuppan Gokulan, Silvia A. Piñeiro, Carl E. Cerniglia
Software Mentions: 2
Published: over 5 years ago

10.1128/AEM.00515-17

Microbiota in Exhaled Breath Condensate and the Lung
Cited by: 14
Author(s): Laura Glendinning, Steven H. Wright, Peter Tennant, Andrew C. Gill, David Collie, Gerry McLachlan
Software Mentions: 2
Published: over 9 years ago

10.1007/s00204-021-03008-0

Integration of transcriptome analysis with pathophysiological endpoints to evaluate cigarette smoke toxicity in an in vitro human airway tissue model
Cited by: 8
Author(s): Rui Xiong, Yue Wu, Qiangen Wu, Levan Muskhelishvili, Kelly J. Davis, Priya Tripathi, Ying Chen, Tao Chen, Matthew Bryant, Hans Rosenfeldt, Sheila M. Healy, Xuefei Cao
Software Mentions: 2
Published: over 5 years ago

10.1186/ar4369

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13075-017-1474-y

VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: almost 9 years ago

10.5713/ajas.19.0221

Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-017-1637-5

Drug repositioning for enzyme modulator based on human metabolite-likeness
Cited by: 10
Author(s): Yoon Hyeok Lee, Hojae Choi, Seongyong Park, Boah Lee, Gwan‐Su Yi
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-017-1945-9

Explorative visual analytics on interval-based genomic data and their metadata
Cited by: 4
Author(s): Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-015-0656-3

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
Cited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-016-1404-z

ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12915-014-0086-0

A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: about 12 years ago

10.1186/s12915-017-0459-2

A multi-trait systems approach reveals a response cascade to bleaching in corals
Cited by: 42
Author(s): Stephanie G. Gardner, Jean-Baptiste Raina, Matthew R. Nitschke, Daniel A. Nielsen, Michael Stat, Cherie A. Motti, Peter J. Ralph, Katherina Petrou
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12885-018-4781-z

Increased insulin-like growth factor 1 production by polyploid adipose stem cells promotes growth of breast cancer cells
Cited by: 14
Author(s): Roberta Fajka‐Boja, Annamária Marton, Ágota Tóth, Péter Blazsó, Vilmos Tubák, Balázs Bálint, István Nagy, Zoltán Hegedűs, Csaba Vízler, Róbert L. Katona
Software Mentions: 2
Published: about 8 years ago

10.1186/s12885-017-3109-8

Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts
Cited by: 12
Author(s): Lina Leiss, Ercan Mutlu, Anne Margrete Øyan, Tao Yan, Oleg Tsinkalovsky, Linda Sleire, Kjell Petersen, Mohummad Aminur Rahman, Mireille Kayitesi Johannessen, Siddharta S. Mitra, Hege Karine Jacobsen, Krishna M. Talasila, Hrvoje Miletić, Inge Jonassen, Xingang Li, Nicolas H.C. Brons, Karl‐Henning Kalland, Jian Wang, Per Øyvind Enger
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2407-14-46

A comprehensive look at transcription factor gene expression changes in colorectal adenomas
Cited by: 20
Author(s): Janine Vonlanthen, Michał Okoniewski, Mirco Menigatti, Elisa Cattaneo, Daniela Pellegrini-Ochsner, Ritva Haider, Josef Jiricny, Teresa Staiano, Federico Buffoli, Giancarlo Marra
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-230X-14-55

DNA methylation subgroups and the CpG island methylator phenotype in gastric cancer: a comprehensive profiling approach
Cited by: 34
Author(s): Marie Loh, Natalia Liem, Aparna Vaithilingam, Pei Li Lim, Nur Sabrina Sapari, Eiram Elahi, Zuan Yu Mok, Chee Leong Cheng, Benedict Yan, Brendan Pang, Manuel Salto-Tellez, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-230X-13-131

Association of gut microbiota with post-operative clinical course in Crohn’s disease
Cited by: 88
Author(s): Neelendu Dey, David Soergel, Susanna Repo, Steven E. Brenner
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2164-13-441

Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting
Cited by: 87
Author(s): Bo Ji, Ben Ernest, Jessica Gooding, Suchita Das, Arnold M. Saxton, Jean Simon, Joëlle Dupont, Sonia Métayer-Coustard, Shawn R. Campagna, Brynn H. Voy
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-015-1659-1

Six host-range restricted poxviruses from three genera induce distinct gene expression profiles in an in vivo mouse model
Cited by: 12
Author(s): Kristy Offerman, Armin Deffur, Olivia Carulei, Robert J. Wilkinson, Nicola Douglass, Anna‐Lise Williamson
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-12-526

Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients
Cited by: 66
Author(s): Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P. Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G. Mitchell, John R. Perfect, James W. Kronstad
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-15-311

Microbiota diversity and gene expression dynamics in human oral biofilms
Cited by: 132
Author(s): Alfonso Benı́tez-Páez, Pedro Belda-Ferre, Áurea Simón-Soro, Álex Mira
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-020-06999-9

Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)
Cited by: 14
Author(s): Bobo Song, Zikai Tang, Xiaolong Li, Jiaming Li, Mingyue Zhang, Kunkun Zhao, Hainan Liu, Shaoling Zhang, Jun Wu
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-019-6274-0

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Cited by: 10
Author(s): Matthew A. Nethery, Emily DeCrescenzo Henriksen, Katheryne V. Daughtry, Suzanne D. Johanningsmeier, Rodolphe Barrangou
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-015-1686-y

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
Cited by: 54
Author(s): Cecilia Lindskog, Jerker Linné, Linn Fagerberg, Björn M. Hallström, Carl Johan Sundberg, Maléne E. Lindholm, Mikael Huss, Caroline Kampf, Howard Choi, David A. Liem, Peipei Ping, Leif Väremo, Adil Mardinoğlu, Jens Nielsen, Erik Larsson, Fredrik Pontén, Mathias Uhlén
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-12-130

In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovine Escherichia coli- mastitis
Cited by: 88
Author(s): Bart Buitenhuis, Christine M. Røntved, Stefan McKinnon Edwards, K.L. Ingvartsen, Peter Sørensen
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-13-564

Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group
Cited by: 16
Author(s): Edgar J. Scott, David W. Dyer
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-015-1708-9

Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation
Cited by: 69
Author(s): John R. Tuttle, Gyoungju Nah, Mary V. Duke, Danny Alexander, Xueying Guan, Qingxin Song, Z. Jeffrey Chen, Brian E. Scheffler, Candace H. Haigler
Software Mentions: 2
Published: over 11 years ago

10.1186/s12864-020-6543-y

Transcriptional profiling and physiological roles of Aedes aegypti spermathecal-related genes
Cited by: 16
Author(s): Tales Vicari Pascini, Marcelo Ramalho-Ortigão, José M. C. Ribeiro, Marcelo Jacobs-Lorena, Gustavo Ferreira Martins
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-020-07025-8

Leishmania infection induces a limited differential gene expression in the sand fly midgut
Cited by: 11
Author(s): Iliano V. Coutinho-Abreu, Tiago D. Serafim, Claudio Meneses, Shaden Kamhawi, Fabiano Oliveira, Jesús G. Valenzuela
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-015-1897-2

cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers
Cited by: 13
Author(s): Jeffrey Ross, A. Kuzin, Theodore M. Brody, Ward F. Odenwald
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-017-4366-2

Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening
Cited by: 38
Author(s): Jianhui Wang, Jianjun Li, Keling Chen, Hongwen Li, Jian He, Bin Guan, Li He
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12864-016-3308-8

A transcriptome-based model of central memory CD4 T cell death in HIV infection
Cited by: 11
Author(s): Gustavo Olvera-García, Tania Aguilar-García, Fany Gutiérrez-Jasso, Iván Imaz-Rosshandler, Claudia Rangel‐Escareño, Lorena Orozco, Irma Aguilar-Delfín, Joel Armando Vázquez-Pérez, Joaquı́n Zúñiga, Santiago Pérez-Patrigeón, Enrique Espinosa
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-016-3413-8

Cecal MicroRNAome response to Salmonella enterica serovar Enteritidis infection in White Leghorn Layer
Cited by: 25
Author(s): Guixian Wu, Yukai Qi, Xiaoyi Liu, Ning Yang, Guiyun Xu, Liying Liu, Xianyao Li
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-017-3813-4

Uncovering the transcriptomic and epigenomic landscape of nicotinic receptor genes in non-neuronal tissues
Cited by: 12
Author(s): Bo Zhang, Pamela A. F. Madden, Junchen Gu, Xiaoyun Xing, Savita Sankar, Jennifer A. Karlow, Kristen L. Kroll, Ting Wang
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-017-3698-2

Global analysis of protein lysine succinylation profiles in common wheat
Cited by: 44
Author(s): Yumei Zhang, Guangyuan Wang, Limin Song, Mu Peng, Wang Shu, Wenxing Liang, Qingsong Lin
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-019-6334-5

Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot
Cited by: 30
Author(s): Garima Raj, Mohammad Umar. Shadab, Sujata Deka, Manashi Das, Jilmil Baruah, Rupjyoti Bharali, Narayan Chandra Talukdar
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-016-3233-x

A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures
Cited by: 2
Author(s): Bliss Lambert, Maheshi Dassanayake, Dong Ha Oh, Shana B. Garrett, Sang Yeol Lee, Gregg S. Pettis
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-15-488

Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies
Cited by: 21
Author(s): Bingjie Zhao, Dehua Yang, Jing Jiang, Jinsong Li, Chunsun Fan, Menggui Huang, Yi Fan, Yan Jin, Youxin Jin
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-016-2557-x

Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells
Cited by: 46
Author(s): Cyril Guilhen, Nicolas Charbonnel, Nicolas Parisot, Nathalie Gueguen, Agnès Iltis, Christiane Forestier, Damien Balestrino
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-11-369

Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins
Cited by: 14
Author(s): Timothy Lilburn, Jianying Gu, Hong-Hong Cai, Yufeng Wang
Software Mentions: 2
Published: almost 17 years ago

10.1186/s12864-017-4426-7

Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root
Cited by: 68
Author(s): Solmaz Irani, Brett Trost, Matthew Waldner, Naghabushana K. Nayidu, J. C. Tu, Anthony Kusalik, Christopher D. Todd, Yangdou Wei, Peta C. Bonham‐Smith
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-9-346

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
Cited by: 50
Author(s): Martin Kircher, Christoph Bock, Martina Paulsen
Software Mentions: 2
Published: over 18 years ago

10.1186/s12864-020-6667-0

Transcriptome profiling of non-climacteric ‘yellow’ melon during ripening: insights on sugar metabolism
Cited by: 13
Author(s): Michelle Orane Schemberger, Marília Aparecida Stroka, Lúcia Margarete dos Reis, Kamila Karoline de Souza Los, Gillize Aparecida Telles de Araujo, Michelle Zibetti Tadra Sfeir, Carolina Weigert Galvão, Rafael Mazer Etto, Amanda Regina Godoy Baptistão, Ricardo Antônio Ayub
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-5718-x

Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng
Cited by: 36
Author(s): Le Xue, Zilong He, Xiaochun Bi, Wei Xü, Ting Wei, Shuangxiu Wu, Songnian Hu
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-306

Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses
Cited by: 35
Author(s): Kerstin Otte, Thomas Fröhlich, Georg J. Arnold, Christian Laforsch
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-016-3463-y

Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways
Cited by: 15
Author(s): Mehran Dastmalchi, Patrick Chapman, Jaeju Yu, Ryan E Austin, Sangeeta Dhaubhadel
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2334-14-498

Host cytokine responses distinguish invasive from airway isolates of the Streptococcusmilleri/anginosis group
Cited by: 3
Author(s): Julienne C. Kaiser, Chris P. Verschoor, Michael G. Surette, Dawn M. E. Bowdish
Software Mentions: 2
Published: about 12 years ago

10.1186/s12916-019-1374-x

Low serum IGF1 is associated with hypertension and predicts early cardiovascular events in women with rheumatoid arthritis
Cited by: 17
Author(s): Malin C. Erlandsson, Lovisa Lyngfelt, N. David Åberg, Caroline Wasén, Rachelle A. Espino, Sofia Töyrä Silfverswärd, Mitra Nadali, Katarina Jood, Karin Andersson, Rille Pullerits, Maria Bokarewa
Software Mentions: 2
Published: over 7 years ago

10.1186/s12881-018-0522-z

Establishing a genetic link between FTO and VDR gene polymorphisms and obesity in the Emirati population
Cited by: 22
Author(s): Saad Khan, Sarah El Hajj Chehadeh, Mahera Abdulrahman, Wael Osman, Habiba Alsafar
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12920-019-0502-y

LncRNA-miRNA-mRNA expression variation profile in the urine of calcium oxalate stone patients
Cited by: 16
Author(s): Xiongfa Liang, Yongchang Lai, Weizhou Wu, Dong Chen, Fangling Zhong, Jian Huang, Tao Zeng, Xiaolu Duan, Yapeng Huang, Shike Zhang, Shujue Li, Wenqi Wu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-019-1532-5

Transcriptional responses of Xanthomonas oryzae pv. oryzae to type III secretion system inhibitor ortho-coumaric acid
Cited by: 6
Author(s): Susu Fan, Fang Tian, Liwei Fang, Ching‐Hong Yang, Chenyang He
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-020-1698-x

Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume
Cited by: 14
Author(s): Otávio Henrique Bezerra Pinto, Thais F. Silva, Carla Simone Vizzotto, Renata Henrique Santana, Fabyano Álvares Cardoso Lopes, Bruno Santana da Silva, Fabiano L. Thompson
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-017-1068-5

Ambient temperature and genotype differentially affect developmental and phenotypic plasticity in Arabidopsis thaliana
Cited by: 64
Author(s): Carla Ibáñez, Yvonne Poeschl, Tom Peterson, Julia Bellstädt, Kathrin Denk, Andreas Gogol-Döring, Marcel Quint, Carolin Delker
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-018-1529-5

Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat
Cited by: 56
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-014-0281-8

Non-specific lipid transfer proteins in maize
Cited by: 68
Author(s): Kaifa Wei, Xiaojun Zhong
Software Mentions: 2
Published: about 12 years ago

10.1186/s12870-016-0880-7

A fast and simple LC-MS-based characterization of the flavonoid biosynthesis pathway for few seed(ling)s
Cited by: 11
Author(s): Benjamin Jaegle, M. Kalle Uroic, Xu Holtkotte, Christina Lucas, Andreas Ole Termath, Hans‐Günther Schmalz, Marcel Bucher, Ute Hoecker, Martin Hülskamp, Andrea Schrader
Software Mentions: 2
Published: about 10 years ago

10.1186/s12870-021-02969-9

The physiological and molecular mechanisms of N transfer in Eucalyptus and Dalbergia odorifera intercropping systems using root proteomics
Cited by: 6
Author(s): Xianyu Yao, Lusheng Liao, Yongzhen Huang, Ge Fan, Mei Yang, Shaoming Ye
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-015-1017-z

BMX: a tool for computing bacterial phyletic composition from orthologous maps
Cited by: 8
Author(s): Benard W. Kulohoma
Software Mentions: 2
Published: almost 12 years ago

10.1186/1756-0500-7-440

Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: over 12 years ago

10.1186/1756-0500-7-761

Expression level of a flavonoid 3′-hydroxylase gene determines pathogen-induced color variation in sorghum
Cited by: 20
Author(s): Hiroshi Mizuno, Takayuki Yazawa, Shigemitsu Kasuga, Yuji Sawada, Jun Ogata, Tsuyu Ando, Hajime Kanamori, Jun‐ichi Yonemaru, Jianzhong Wu, Masami Yokota Hirai, Takashi Matsumoto, Hiroyuki Kawahigashi
Software Mentions: 2
Published: about 12 years ago

10.1186/s12918-018-0639-x

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain
Cited by: 24
Author(s): Steven Cogill, Anand Srivastava, Mary Qu Yang, Liangjiang Wang
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12918-015-0159-x

Genome-scale resources for Thermoanaerobacterium saccharolyticum
Cited by: 22
Author(s): Devin H. Currie, Babu Raman, Christopher M. Gowen, Timothy J. Tschaplinski, Miriam Land, Steven D. Brown, Sean F. Covalla, Dawn M. Klingeman, Zamin K. Yang, Nancy L. Engle, C. M. Johnson, Miguel Rodríguez, Aubie Shaw, William R. Kenealy, Lee R. Lynd, Stephen S. Fong, Jonathan R. Mielenz, Brian H. Davison, David A. Hogsett, Christopher D. Herring
Software Mentions: 2
Published: over 11 years ago

10.1186/1752-0509-5-202

A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections
Cited by: 18
Author(s): Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze
Software Mentions: 2
Published: almost 15 years ago

10.1186/s40659-020-00299-y

Microarray profiling and functional analysis of differentially expressed plasma exosomal circular RNAs in Graves’ disease
Cited by: 16
Author(s): Ying Sun, Wei Wang, Yuxiao Tang, Daping Wang, Liang Li, Na Min, Guantong Jiang, Qian Li, Shulin Chen, Jin Zhou
Software Mentions: 2
Published: over 6 years ago

10.3390/biology8020021

Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
Cited by: 1
Author(s): Waraporn Kraitavin, Kazutoshi Yoshitake, Yoji Igarashi, Susumu Mitsuyama, Shigeharu Kinoshita, Daisuke Kambayashi, Shugo Watabe, Shuichi Asakawa
Software Mentions: 2
Published: over 7 years ago

10.3390/biology10080782

Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Cited by: 105
Author(s): Zaki Saati‐Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/3268505

The Role of Overexpressed Apolipoprotein AV in Insulin-Resistant Hepatocytes
Cited by: 0
Author(s): Wang Zhao, Yaqiong Liu, Xiao‐Bo Liao, Shui‐Ping Zhao
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20191554

Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA–miRNA–mRNA networks and Cox regression models
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Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Wei Hua Jia, Qi Song, Changgang Sun
Software Mentions: 2
Published: almost 7 years ago

10.1042/BSR20204171

Ddhd1 knockout mouse as a model of locomotive and physiological abnormality in familial spastic paraplegia
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Author(s): Takuya Morikawa, Hiroaki Ohishi, Kengo Kosaka, Tomofumi Shimojo, Akihiro Nagano, Itsuki Taniguchi, Ryuta Fujioka, Kousuke Moriyama, Motoko Unoki, Masatomo Takahashi, Motonao Nakao, Yoshihiro Izumi, Takeshi Bamba, Hidetada Sasaki, Satoshi Miura, Hiroki Shibata
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13068-017-0720-5

Development of a genetically programed vanillin-sensing bacterium for high-throughput screening of lignin-degrading enzyme libraries
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Author(s): Barindra Sana, Burton K. Chia, Sarada Raghavan, R. Balamurugan, Niranjan Nagarajan, Jayasree Seayad, Farid J. Ghadessy
Software Mentions: 2
Published: almost 10 years ago

10.1093/brain/awz291

Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia
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Author(s): Frédéric M. Vaz, John H McDermott, Mariëlle Alders, Saskia B. Wortmann, Stefan Kölker, Mia L. Pras‐Raves, Martin A. T. Vervaart, Henk van Lenthe, Angela C. M. Luyf, Hyung L. Elfrink, Kay Metcalfe, Sara Cuvertino, Peter E. Clayton, Rebecca Yarwood, Martin Lowe, Simon C. Lovell, R. Curtis Rogers, Deciphering Developmental Disorders Study, Antoine H. C. van Kampen, J. P. N. Ruiter, Ronald J. A. Wanders, Sacha Ferdinandusse, Michel van Weeghel, Marc Engelen, Siddharth Banka
Software Mentions: 2
Published: about 7 years ago

10.1186/s12935-020-1128-z

Establishment and characterization of patient-derived cancer models of malignant peripheral nerve sheath tumors
Cited by: 10
Author(s): Rieko Oyama, Fusako Kito, Mami Takahashi, Emi Hattori, Rei Noguchi, Yoko Takai, Marimu Sakumoto, Zhiwei Qiao, Shunichi Toki, Michio Sugawara, Yoshikazu Tanzawa, Eisuke Kobayashi, Fumihiko Nakatani, Shintaro Iwata, Akihiko Yoshida, Akira Kawai, Tadashi Kondo
Software Mentions: 2
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10.26508/lsa.201800197

A role for MED14 and UVH6 in heterochromatin transcription upon destabilization of silencing
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Author(s): Pierre Bourguet, Stève de Bossoreille, Leticia López-González, Marie-Noëlle Pouch-Pélissier, Ángeles Gómez-Zambrano, Anthony Devert, Thierry Pélissier, Romain Pogorelcnik, Isabelle Vaillant, Olivier Mathieu
Software Mentions: 2
Published: almost 8 years ago

10.26508/lsa.201900554

TRAIL-induced variation of cell signaling states provides nonheritable resistance to apoptosis
Cited by: 10
Author(s): Reema Baskar, Harris G. Fienberg, Zumana Khair, Patrícia Favaro, Samuel C. Kimmey, Douglas R. Green, Garry P. Nolan, Sylvia K. Plevritis, Sean C. Bendall
Software Mentions: 2
Published: about 7 years ago

10.1111/liv.14692

The biological process of lysine‐tRNA charging is therapeutically targetable in liver cancer
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Author(s): Ruyi Zhang, Lisanne Noordam, Xumin Ou, Bo Ma, Yunlong Li, Priyadip Das, Shaojun Shi, Jiaye Liu, Ling Wang, Pengfei Li, Monique M A Verstegen, D. Srinivasa Reddy, Luc J. W. van der Laan, Maikel P. Peppelenbosch, Jaap Kwekkeboom, Ron Smits
Software Mentions: 2
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10.1080/10872981.2019.1635844

Information within residency monthly evaluation forms at two institutions
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Author(s): Christopher J. Cooper, Paulette Wehner, Cindy Dailey, Nanette O'Connor, James Kleshinski, Joseph I. Shapiro
Software Mentions: 2
Published: almost 8 years ago

10.3390/metabo11070427

Primary Metabolite Profile Changes in Coffea spp. Promoted by Single and Combined Exposure to Drought and Elevated CO2 Concentration
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Author(s): Ana Margarida Rodrigues, Tiago F. Jorge, Sonia Osorio, Delphine M. Pott, Fernando C. Lidon, Fábio M. DaMatta, Isabel Marques, Ana I. Ribeiro‐Barros, José C. Ramalho, Carla António
Software Mentions: 2
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10.1007/s11306-019-1564-8

A large-scale analysis of targeted metabolomics data from heterogeneous biological samples provides insights into metabolite dynamics
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Author(s): Ho‐Joon Lee, Daniel M. Kremer, Peter Sajjakulnukit, Li Zhang, Costas A. Lyssiotis
Software Mentions: 2
Published: over 7 years ago

10.1007/s11306-019-1599-x

Metabolomics: a search for biomarkers of visceral fat and liver fat content
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Author(s): Sebastiaan C. Boone, Dennis O. Mook‐Kanamori, Frits R. Rosendaal, Martin den Heijer, Hildo J. Lamb, Albert de Roos, Saskia le Cessie, Ko Willems van Dijk, Renée de Mutsert
Software Mentions: 2
Published: about 7 years ago

10.1007/s11306-016-1120-8

Loss of ncm5 and mcm5 wobble uridine side chains results in an altered metabolic profile
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Author(s): Tony Karlsborn, A. K. M. Firoj Mahmud, Hasan Tükenmez, Andeŕs S. Byström
Software Mentions: 2
Published: about 10 years ago

10.1007/s11306-018-1328-x

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects
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Author(s): Parastoo Fazelzadeh, Roland W. J. Hangelbroek, Peter J. Joris, Casper G. Schalkwijk, Diederik Esser, Lydia A. Afman, Thomas Hankemeier, Doris M. Jacobs, Velitchka V. Mihaleva, Sander Kersten, John van Duynhoven, Mark V. Boekschoten
Software Mentions: 2
Published: over 8 years ago

10.3390/microarrays4040630

Integrating Colon Cancer Microarray Data: Associating Locus-Specific Methylation Groups to Gene Expression-Based Classifications
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Author(s): Ana Barat, Heather J. Ruskin, Annette T. Byrne, Jochen H M Prehn
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10.1111/1751-7915.12342

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Author(s): Xin Li, Meiling Sun, Huihui Zhang, Nan Xu, Sun Guang-yu
Software Mentions: 2
Published: over 10 years ago

10.15698/mic2021.09.760

Landscapes and bacterial signatures of mucosa-associated intestinal microbiota in Chilean and Spanish patients with inflammatory bowel disease
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Author(s): Nayaret Chamorro, David A. Montero, Pablo Gallardo, Mauricio J. Farfán, Mauricio Contreras, Marjorie De la Fuente, Karen Dubois, Marcela A. Hermoso, Rodrigo Quera, Marjorie Pizarro-Guajardo, Daniel Paredes-Sabja, Daniel Ginard, Ramon Rosselló‐Móra, Roberto Vidal
Software Mentions: 2
Published: about 5 years ago

10.1186/s12934-021-01602-6

Superior production of heavy pamamycin derivatives using a bkdR deletion mutant of Streptomyces albus J1074/R2
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Author(s): Lars Gläser, Martin Kuhl, Julian Stegmüller, Christian Rückert, Maksym Myronovskyi, Jörn Kalinowski, Andriy Luzhetskyy, Christoph Wittmann
Software Mentions: 2
Published: over 5 years ago

10.1002/mbo3.330

Bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea
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Author(s): Qi Ye, Ying Wu, Zhuoyi Zhu, Xiaona Wang, Zhongqiao Li, Jing Zhang
Software Mentions: 2
Published: almost 11 years ago

10.1002/mbo3.230

Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H 2 18 O
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Author(s): Elizabeth A. Rettedal, Volker S. Brözel
Software Mentions: 2
Published: almost 12 years ago

10.1099/mic.0.2006/000562-0

A new environmentally resistant cell type from Dictyostelium
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Author(s): Ioannis Serafimidis, Gareth Bloomfield, Jason Skelton, Alasdair Ivens, Robert R. Kay
Software Mentions: 2
Published: almost 20 years ago

10.1186/s40168-017-0271-9

Uncovering the trimethylamine-producing bacteria of the human gut microbiota
Cited by: 300
Author(s): Silke Rath, B. Heidrich, Dietmar H. Pieper, Marius Vital
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-018-0508-2

The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always
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Author(s): Johan Bengtsson‐Palme
Software Mentions: 2
Published: over 8 years ago

10.1186/2049-2618-1-27

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
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Author(s): Katherine E. Price, Thomas H. Hampton, Alex H. Gifford, Emily L. Dolben, Deborah A. Hogan, Hilary G. Morrison, Mitchell L. Sogin, George A. O’Toole
Software Mentions: 2
Published: about 13 years ago

10.1186/s40168-017-0364-5

Comparing microbiotas in the upper aerodigestive and lower respiratory tracts of lambs
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Author(s): Laura Glendinning, David Collie, Steven H. Wright, Kenny Rutherford, Gerry McLachlan
Software Mentions: 2
Published: about 9 years ago

10.1186/s40168-018-0475-7

Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
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Author(s): Efrem S. Lim, Cynthia Rodríguez, Lori R. Holtz
Software Mentions: 2
Published: over 8 years ago

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