Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1038/s41598-019-47757-6
The Genomic Landscape of Centromeres in Cancers
Cited by: 17
Author(s): Anjan K. Saha, Mohamad Mourad, Mark H. Kaplan, Ilana Chefetz, Sami N. Malek, Ronald J. Buckanovich, David M. Markovitz, Rafael Contreras-Galindo
Software Mentions: 3
Published: over 5 years ago
10.18632/oncotarget.23537
Upregulation of cell cycle genes in head and neck cancer patients may be antagonized by erufosine’s down regulation of cell cycle processes in OSCC cells
Cited by: 13
Author(s): Shariq Ansari, Ashwini Kumar Sharma, Michael Zepp, Elizabet Ivanova, Frank Bergmann, Rainer König, Martin R. Berger
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12864-017-3663-0
Transcriptome analysis of the two unrelated fungal β-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs
Cited by: 22
Author(s): Dominik Terfehr, Tim A. Dahlmann, Ulrich Kück
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0233064
Transcriptome analysis of Catarina scallop (Argopecten ventricosus) juveniles treated with highly-diluted immunomodulatory compounds reveals activation of non-self-recognition system
Cited by: 9
Author(s): Jesús Antonio López‐Carvallo, José Manuel Mazón‐Suástegui, Miguel Ángel Hernández‐Oñate, Dariel Tovar‐Ramírez, Fernando Abasolo‐Pacheco, Rosa María Morelos‐Castro, Guadalupe Fabiola Arcos‐Ortega
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0213823
Natural and human-impacted diversity of bryophytes along an elevational gradient on an oceanic island (La Palma, Canarias)
Cited by: 4
Author(s): Raquel Hernández‐Hernández, Jürgen Kluge, Claudine Ah‐Peng, Juana María González‐Mancebo
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-018-4510-7
Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster
Cited by: 30
Author(s): Michael P. Meers, Karen Adelman, Robert J. Duronio, Brian D. Strahl, Daniel J. McKay, A. Gregory Matera
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0119741
Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance
Cited by: 12
Author(s): Silvia Pajares, Valeria Souza, Luis E. Eguiarte
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2164-14-895
Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation
Cited by: 52
Author(s): Adam B. Olson, Heather Kent, Christopher D. Sibley, Margot E. Grinwis, Philip Mabon, Claude Ouellette, Shari Tyson, Morag Graham, Shaun Tyler, Gary Van Domselaar, Michael G. Surette, Cindi R. Corbett
Software Mentions: 3
Published: almost 11 years ago
10.1038/s41598-019-45764-1
Varroa destructor parasitism has a greater effect on proteome changes than the deformed wing virus and activates TGF-β signaling pathways
Cited by: 20
Author(s): Tomáš Erban, B. Sopko, Klara Kadlikova, Pavel Talacko, Karel Harant
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0161967
CYR61 and TAZ Upregulation and Focal Epithelial to Mesenchymal Transition May Be Early Predictors of Barrett’s Esophagus Malignant Progression
Cited by: 6
Author(s): Joana Cardoso, Marta Mesquita, António Dias Pereira, Mónica Bettencourt-Dias, Paula Chaves, José B. Pereira-Leal
Software Mentions: 3
Published: about 8 years ago
10.1186/s12864-021-07426-3
Transcriptome analysis of the transdifferentiation of canine BMSCs into insulin producing cells
Cited by: 2
Author(s): Jinglu Wang, Pengxiu Dai, Tong Zou, Yangou Lv, Wen Zhao, Xinke Zhang, Yihua Zhang
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0169805
Novel Analysis of Immune Cells from Nasal Microbiopsy Demonstrates Reliable, Reproducible Data for Immune Populations, and Superior Cytokine Detection Compared to Nasal Wash
Cited by: 47
Author(s): Simon P. Jochems, Katherine Piddock, Jamie Rylance, Hugh Adler, Beatriz F. Carniel, Andrea Collins, Jenna F. Gritzfeld, Carole A. Hancock, Helen Hill, Jesús Reiné, Alexandra L. Seddon, Carla Solórzano, Syba Sunny, A Zachary Trimble, A. Wright, Seher Zaidi, Stephen B. Gordon, Daniela M. Ferreira
Software Mentions: 3
Published: almost 8 years ago
10.15252/embj.201592383
Cytokine‐induced megakaryocytic differentiation is regulated by genome‐wide loss of a <scp>uSTAT</scp> transcriptional program
Cited by: 67
Author(s): Hyun Jung Park, Juan Li, Rebecca Hannah, Simon C. Biddie, Ana Leal-Cervantes, Kristina Kirschner, David Flores Santa Cruz, Veronika Sexl, Berthold Göttgens, Anthony Green
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41598-019-42691-z
Ancestral Stress Alters Lifetime Mental Health Trajectories and Cortical Neuromorphology via Epigenetic Regulation
Cited by: 20
Author(s): Mirela Ambeskovic, Olena Mykolaivna Babenko, Yaroslav Ilnytskyy, Igor Kovalchuk, Bryan Kolb, Gerlinde A. S. Metz
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0148771
Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Cited by: 41
Author(s): Venkata Suresh Bonthala, Katie Mayes, Joanna Moreton, Martin Blythe, Victoria Wright, Sean May, Festo Massawe, Sean Mayes, Jamie Twycross
Software Mentions: 3
Published: almost 9 years ago
10.15252/embj.201696056
A novel microglial subset plays a key role in myelinogenesis in developing brain
Cited by: 316
Author(s): Agnieszka Włodarczyk, Inge R. Holtman, Martin Krueger, Nir Yogev, Julia Bruttger, Reza Khorooshi, Anouk Benmamar‐Badel, Jelkje J. de Boer-Bergsma, Nellie Anne Martin, Khalad Karram, Isabella Kramer, Erik Boddeke, Ari Waisman, Bart J. L. Eggen, Trevor Owens
Software Mentions: 3
Published: about 7 years ago
10.7150/jca.31287
Comprehensive investigation of key biomarkers and pathways in hepatitis B virus-related hepatocellular carcinoma
Cited by: 9
Author(s): Xiwen Liao, Tingdong Yu, Chengkun Yang, Ketuan Huang, Xiangkun Wang, Chuangye Han, Rui Huang, Xiaoguang Liu, Yu Liu, Guangzhi Zhu, Hao Su, Wei Qin, Deng Jun, Xianmin Zeng, Bowen Han, Quanfa Han, Zheng-Qian Liu, Xin Zhou, Junqi Liu, Yizhen Gong, Zhengtao Liu, Jianlv Huang, Lei Lü, Xinping Ye, Tao Peng
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0233380
Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing
Cited by: 11
Author(s): Akihiro Sakai, Mizuo Ando, Takahito Fukusumi, Shuling Ren, Chao Liu, Jesse R. Qualliotine, Sunny Haft, Sayed Sadat, Yuki Saito, Theresa Guo, Guiyin Xu, Roman Šášik, Kathleen M. Fisch, J. Silvio Gutkind, Elana J. Fertig, Alfredo A. Molinolo, Joseph A. Califano
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0109710
Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease
Cited by: 74
Author(s): HeeKuk Park, Jong Wook Shin, Sang-Gue Park, Wonyong Kim
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0158768
Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning
Cited by: 8
Author(s): Chunlei Yang, Lan Mi, Xianqiao Hu, Jianxin Liu, Jiakun Wang
Software Mentions: 3
Published: over 8 years ago
10.12952/journal.elementa.000064
Urban microbial ecology of a freshwater estuary of Lake Michigan
Cited by: 40
Author(s): James S. Fisher, Ryan J. Newton, Deborah K. Dila, Sandra L. McLellan
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0251565
The protein and volatile components of trail mucus in the Common Garden Snail, Cornu aspersum
Cited by: 7
Author(s): Kaylene R. Ballard, Anne Klein, R. Andrew Hayes, Tianfang Wang, Scott F. Cummins
Software Mentions: 3
Published: over 3 years ago
10.18632/oncotarget.23642
Potential for subsets of wt-NPM1 primary AML blasts to respond to retinoic acid treatment
Cited by: 9
Author(s): Rodica P. Bunaciu, Robert MacDonald, Feng Gao, Lynn M. Johnson, Jeffrey D. Varner, Xin Wang, Sarah Nataraj, Mónica L. Guzmán, Andrew Yen
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-018-36561-3
Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
Cited by: 30
Author(s): Sebastian Theobald, Tammi Camilla Vesth, Jakob Kræmmer Haar Rendsvig, Kristian Fog Nielsen, Robert Riley, Lucas M. Abreu, Asaf Salamov, Jens Christian Frisvad, Thomas Ostenfeld Larsen, Mikael Rørdam Andersen, Jakob Blæsbjerg Hoof
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12986-020-00456-w
High fat diet significantly changed the global gene expression profile involved in hepatic drug metabolism and pharmacokinetic system in mice
Cited by: 15
Author(s): Yuqi He, Tao Yang, Yimei Du, Lin Q, Feifei Ma, Zunping Wu, Hua Ling, Li Yang, Zhengtao Wang, Qingdi Zhou, Guangbo Ge, Yuqi He
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0252691
Industrialization as a source of heavy metals and antibiotics which can enhance the antibiotic resistance in wastewater, sewage sludge and river water
Cited by: 42
Author(s): Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska, Martyna Buta, W. Zieliński, Damian Rolbiecki, Joanna Giebułtowicz, Grzegorz Nałęcz‐Jawecki, Grażyna Płaza
Software Mentions: 3
Published: over 3 years ago
10.1111/jcmm.14664
The non‐coding RNome after splenectomy
Cited by: 12
Author(s): Mihnea P. Dragomir, Ștefan Tudor, Kan Okubo, Masayoshi Shimizu, Meng Chen, Dana Elena Giza, Weixiang He, Cristina Ivan, C Vasilescu
Software Mentions: 3
Published: about 5 years ago
10.1186/s12864-016-2906-9
An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC)
Cited by: 18
Author(s): Yuanyuan Wang, Xingyi Guo, Michael J. Bray, Zhiyong Ding, Zhongming Zhao
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0189334
aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
Cited by: 3
Author(s): Victor Renault, Jörg Tost, Fabien Pichon, Shu‐Fang Wang‐Renault, Éric Letouzé, Sandrine Imbeaud, Jessica Zucman‐Rossi, Jean‐François Deleuze, Alexandre How‐Kit
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0182533
A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production
Cited by: 73
Author(s): Ilaria Varotto-Boccazzi, M. Ottoboni, Elena Martín, Francesco Comandatore, L. Vallone, Thomas Spranghers, Mia Eeckhout, Valeria Mereghetti, L. Pinotti, Sara Epis
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0176739
Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system
Cited by: 21
Author(s): Eija Nissilä, François P. Douillard, Jarmo Ritari, Lars Paulín, Hanna Järvinen, Pia Rasinkangas, Karita Haapasalo, Seppo Meri, Hanna Jarva, Willem M. de Vos
Software Mentions: 3
Published: over 7 years ago
10.1186/s12864-018-5207-7
Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum
Cited by: 30
Author(s): Justin Gibbons, Katrina A. Button-Simons, Swamy Rakesh Adapa, Suzanne Li, Maxwell Pietsch, Min Zhang, Xiangyun Liao, John Adams, Michael T. Ferdig, Rays H. Y. Jiang
Software Mentions: 3
Published: almost 6 years ago
10.18632/oncotarget.23409
Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Cited by: 46
Author(s): Viktor Arnhold, Karin Schmelz, Jutta Proba, Annika Winkler, Jasmin Wünschel, Joern Toedling, Hedwig E. Deubzer, Annette Künkele, Angelika Eggert, Johannes H. Schulte, Patrick Hundsdoerfer
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-018-33272-7
Increased levels of circulating MMP3 correlate with severe rejection in face transplantation
Cited by: 18
Author(s): Branislav Kollar, Andrey V. Shubin, Thiago J. Borges, Sotirios Tasigiorgos, Thet Su Win, Christine G. Lian, Simon T. Dillon, Xuesong Gu, Iris Wyrobnik, Gëorge F. Murphy, Bohdan Pomahac, Towia A. Libermann, Leonardo V. Riella
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-018-31765-z
Neurotransmitter identity and electrophysiological phenotype are genetically coupled in midbrain dopaminergic neurons
Cited by: 21
Author(s): Mónica Tapia, Pierre Yves Baudot, Christine Formisano-Tréziny, Martial A Dufour, Simone Temporal, M. Lasserre, Béatrice Marquèze-Pouey, Jean Gabert, Kazuto Kobayashi, Jean-Marc Goaillard
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0101777
Rapid Phenotypic and Genomic Change in Response to Therapeutic Pressure in Prostate Cancer Inferred by High Content Analysis of Single Circulating Tumor Cells
Cited by: 123
Author(s): Angel E. Dago, Asya Stepansky, Anders Carlsson, Madelyn Luttgen, Jude Kendall, Timour Baslan, Anand Kolatkar, Michael Wigler, Kelly Bethel, Mitchell E. Gross, James Hicks, Peter Kühn
Software Mentions: 3
Published: over 10 years ago
10.1007/s00253-019-09701-6
Uncovering carbohydrate metabolism through a genotype-phenotype association study of 56 lactic acid bacteria genomes
Cited by: 52
Author(s): G. Buron-Moles, Anna Chailyan, Igor Dolejš, Jochen Förster, Marta Hanna Mikš
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0111297
Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage
Cited by: 26
Author(s): Matthew McKnight Croken, Yanfen Ma, Lye Meng Markillie, Ron Taylor, Galya Orr, Louis M. Weiss, Kami Kim
Software Mentions: 3
Published: about 10 years ago
10.1186/s12864-019-5460-4
RNA-sequencing analysis of shell gland shows differences in gene expression profile at two time-points of eggshell formation in laying chickens
Cited by: 22
Author(s): Samiullah Khan, Shu‐Biao Wu, Juliet R. Roberts
Software Mentions: 3
Published: almost 6 years ago
10.18632/aging.101578
High expression of the breast cancer susceptibility gene BRCA1 in long-lived termite kings
Cited by: 9
Author(s): Eisuke Tasaki, Yuki Mitaka, Tomonari Nozaki, Keiko Kobayashi, Kenji Matsuura, Yoshihito Iuchi
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0065793
Plasmidome-Analysis of ESBL-Producing Escherichia coli Using Conventional Typing and High-Throughput Sequencing
Cited by: 41
Author(s): Alma Brolund, Oscar Franzén, Öjar Melefors, Karin Tegmark-Wisell, Linus Sandegren
Software Mentions: 3
Published: over 11 years ago
10.1186/s12864-021-07847-0
Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)
Cited by: 5
Author(s): Tao Qi, Jinping Li, Hong Wang, Xiaofan Han, Junrong Li, Jinzhe Du
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-015-1450-3
The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies
Cited by: 80
Author(s): Julie Earl, Daniel Rico, Enrique Carrillo de Santa Pau, Benjamín Rodríguez-Santiago, Marinela Méndez-Pertuz, Herbert Auer, Gonzalo Vázquez Gómez, H. Barton Grossman, David G. Pisano, Wolfgang A. Schulz, Luís A. Pérez-Jurado, Alfredo Carrato, Dan Theodorescu, Stephen J. Chanock, Alfonso Valencia, Francisco X. Real
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0078613
Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves
Cited by: 77
Author(s): Eva E. Reisberg, U. Hildebrandt, Markus Riederer, Ute Hentschel
Software Mentions: 3
Published: about 11 years ago
10.3390/ijms22115763
Integration of the Microbiome, Metabolome and Transcriptomics Data Identified Novel Metabolic Pathway Regulation in Colorectal Cancer
Cited by: 11
Author(s): Vartika Bisht, Katrina Nash, Yuanwei Xu, Prasoon Agarwal, Sofie Bosch, Georgios V. Gkoutos, Animesh Acharjee
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-019-5984-7
An insight into the sialome, mialome and virome of the horn fly, Haematobia irritans
Cited by: 14
Author(s): José M. C. Ribeiro, Humberto Julio Debat, Mariana Boiani, X. Ures, Sérgio Paulo Dejato da Rocha, Martı́n Breijo
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-018-30464-z
Metabolomic changes in the mouse retina after optic nerve injury
Cited by: 13
Author(s): Kota Sato, Daisuke Saigusa, Ryosuke Saito, Amane Fujioka, Yurika Nakagawa, Koji M. Nishiguchi, Taiki Kokubun, Ikuko N. Motoike, Kouichi Maruyama, Kazuko Omodaka, Yukihiro Shiga, Akira Uruno, S. Koshiba, Masayuki Yamamoto, Toru Nakazawa
Software Mentions: 3
Published: over 6 years ago
10.1007/s00359-018-1252-6
Candidate genes for cooperation and aggression in the social wasp Polistes dominula
Cited by: 17
Author(s): Fabio Manfredini, Mark J. F. Brown, Amy L. Toth
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-018-29912-7
Transcriptional profiles of crossbred embryos derived from yak oocytes in vitro fertilized with cattle sperm
Cited by: 2
Author(s): Xiang-Dong Zi, Shuang Liu, Wei Xia, Xianrong Xiong, Bin Luo
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0117439
Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)
Cited by: 65
Author(s): Matteo Montagna, Bessem Chouaia, Giuseppe Mazza, Erica M. Prosdocimi, Elena Crotti, Valeria Mereghetti, Violetta Vacchini, Annamaria Giorgi, Alessio De Biase, S. Longo, Rita Cervo, G.C. Lozzia, Alberto Alma, Claudio Bandi, Daniele Daffonchio
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0082319
Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations
Cited by: 21
Author(s): Kirsten Ellegaard, Lisa Klasson, Siv G. E. Andersson
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pone.0172521
Chronically dysregulated NOTCH1 interactome in the dentate gyrus after traumatic brain injury
Cited by: 16
Author(s): Noora Puhakka, Anna Bot, Niina Vuokila, Konrad J. Dębski, Katarzyna Łukasiuk, Asla Pitkänen
Software Mentions: 3
Published: over 7 years ago
10.1186/s12864-018-5241-5
The impact of genome evolution on the allotetraploid Nicotiana rustica – an intriguing story of enhanced alkaloid production
Cited by: 22
Author(s): Nicolas Sierro, James N. D. Battey, Lucien Bovet, Verena Liedschulte, Sonia Ouadi, JH Thomas, Hervé Broye, Hélène Laparra, Aline Vuarnoz, Gerhard K. Lang, Simon Goepfert, Manuel C. Peitsch, Nikolai V. Ivanov
Software Mentions: 3
Published: almost 6 years ago
10.1186/1465-9921-11-70
Response of the mouse lung transcriptome to welding fume: effects of stainless and mild steel fumes on lung gene expression in A/J and C57BL/6J mice
Cited by: 25
Author(s): Patti C. Zeidler-Erdely, Michael L. Kashon, Shengqiao Li, James M. Antonini
Software Mentions: 3
Published: over 14 years ago
10.1371/journal.pone.0054379
Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
Cited by: 199
Author(s): Tiina Drell, Triin Lillsaar, Lea Tummeleht, Jaak Simm, Anu Aaspõllu, Edda Väin, Ivo Saarma, Andres Salumets, Gilbert Donders, Madis Metsis
Software Mentions: 3
Published: almost 12 years ago
10.1186/s12864-021-07655-6
Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines
Cited by: 9
Author(s): Virginia Mwape, Fredrick M. Mobegi, Roshan Regmi, Toby E. Newman, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0118201
A Combined Gene Signature of Hypoxia and Notch Pathway in Human Glioblastoma and Its Prognostic Relevance
Cited by: 45
Author(s): Khushboo Irshad, Saroj Kant Mohapatra, Chitrangda Srivastava, Harshit Garg, Seema Mishra, Bhawana Dikshit, Chitra Sarkar, Deepak Gupta, P. Sarat Chandra, Parthaprasad Chattopadhyay, Subrata Sinha, Kunzang Chosdol
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0217431
Comparison of bacterial community structure and potential functions in hypoxic and non-hypoxic zones of the Changjiang Estuary
Cited by: 27
Author(s): Dongmei Wu, Qiu-Ping Dai, Xuezhu Liu, Yingping Fan, Jianxin Wang
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0118424
Non-Viral Generation of Marmoset Monkey iPS Cells by a Six-Factor-in-One-Vector Approach
Cited by: 38
Author(s): Katharina Debowski, Rita Warthemann, Jana Lentes, Gabriela Salinas-Riester, Ralf Dressel, Daniel Langenstroth, Jörg Gromoll, Erika Sasaki, Rüdiger Behr
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0131292
An Insight into the Sialome of the Lone Star Tick, Amblyomma americanum, with a Glimpse on Its Time Dependent Gene Expression
Cited by: 95
Author(s): Shahid Karim, José M. C. Ribeiro
Software Mentions: 3
Published: over 9 years ago
10.1002/ece3.3542
Precopulatory but not postcopulatory male reproductive traits diverge in response to mating system manipulation in<i>Drosophila melanogaster</i>
Cited by: 15
Author(s): Kristina U. Wensing, Mareike Koppik, Claudia Fricke
Software Mentions: 3
Published: about 7 years ago
10.1098/rsos.170910
Gene expression differs in susceptible and resistant amphibians exposed to <i>Batrachochytrium dendrobatidis</i>
Cited by: 32
Author(s): Evan A. Eskew, Barbara C. Shock, Elise E B LaDouceur, Kevin Keel, Michael R. Miller, Janet E. Foley, Brian D. Todd
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0110664
Soil Temperature Determines the Reaction of Olive Cultivars to Verticillium dahliae Pathotypes
Cited by: 29
Author(s): Rocío Calderón, Carlos Lucena, J. L. Trapero-Casas, Pablo J. Zarco‐Tejada, Juan A Navas‐Cortés
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0130198
Chronic Insulin Exposure Induces ER Stress and Lipid Body Accumulation in Mast Cells at the Expense of Their Secretory Degranulation Response
Cited by: 10
Author(s): William E. Greineisen, Kristina Maaetoft-Udsen, Mark Speck, Januaria M. Balajadia, Lori M. N. Shimoda, Carl Sung, Helen Turner
Software Mentions: 3
Published: over 9 years ago
10.15252/emmm.201708274
Identification of potential therapeutic targets in prostate cancer through a cross‐species approach
Cited by: 30
Author(s): Sarah Jurmeister, Antonio Ramos-Montoya, Carmen Sandi, Nelma Pértega‐Gomes, Karan Wadhwa, Alastair Lamb, Mark J. Dunning, Jan Attig, Jason S. Carroll, Lee G.D. Fryer, Sérgio Luís Felisbino, David E. Neal
Software Mentions: 3
Published: almost 7 years ago
10.1002/pmic.201700388
Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib‐Resistant Non‐Small Cell Lung Cancer Cells
Cited by: 19
Author(s): Wang Li, Heyong Wang, Yan Yang, Tian Zhao, Zhixiong Zhang, Ye Tian, Zhaomie Shi, Xiaojun Peng, Fēi Li, Yonghong Feng, Lei Zhang, Gening Jiang, Fan Zhang
Software Mentions: 3
Published: over 6 years ago
10.1186/s13321-018-0257-z
Adverse drug reactions triggered by the common HLA-B*57:01 variant: virtual screening of DrugBank using 3D molecular docking
Cited by: 5
Author(s): George Van Den Driessche, Denis Fourches
Software Mentions: 3
Published: almost 7 years ago
10.1186/1471-2164-14-540
Solanum torvum responses to the root-knot nematode Meloidogyne incognita
Cited by: 38
Author(s): Paolo Bagnaresi, T. Sala, Tiziana Irdani, Cristina Scotto, Antonella Lamontanara, Massimiliano Beretta, Giuseppe Leonardo Rotino, S. Sestili, Luigi Cattivelli, E. Sabatini
Software Mentions: 3
Published: over 11 years ago
10.1371/journal.pone.0200818
Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus
Cited by: 26
Author(s): Sandra Laban, Jessica S. Suwandi, Vincent van Unen, J. Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P. F. Lelieveldt, Bart O. Roep
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0210542
Endophytic bacterial communities in peels and pulp of five root vegetables
Cited by: 20
Author(s): Viia Kõiv, Krõõt Arbo, Ülo Maiväli, Veljo Kisand, Märt Roosaare, Maido Remm, Tanel Tenson
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0135494
Characterization of the Intestinal Lactobacilli Community following Galactooligosaccharides and Polydextrose Supplementation in the Neonatal Piglet
Cited by: 19
Author(s): Jennifer L. Hoeflinger, Dimitri Kashtanov, Stephen B. Cox, Scot E. Dowd, Zeina E. Jouni, Sharon M. Donovan, Michael J. Miller
Software Mentions: 3
Published: over 9 years ago
10.3390/proteomes7020019
A Preliminary Metagenome Analysis Based on a Combination of Protein Domains
Cited by: 0
Author(s): Yoji Igarashi, Daisuke Mori, Susumu Mitsuyama, Kazutoshi Yoshitake, Hiroaki Ono, Tsuyoshi Watanabe, Yukiko Taniuchi, Tomoko Sakami, Akira Kuwata, Takanori Kobayashi, Yuji Ishino, Shugo Watabe, Takashi Gojobori, Shuichi Asakawa
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0174514
Oxygen tension regulates the miRNA profile and bioactivity of exosomes released from extravillous trophoblast cells – Liquid biopsies for monitoring complications of pregnancy
Cited by: 89
Author(s): Grace Truong, Dominic Guanzon, Vyjayanthi Kinhal, Omar Elfeky, Andrew Lai, Sherri Longo, Zarin Nuzhat, Carlos Palma, Katherin Scholz-Romero, Ramkumar Menon, Ben Willem J. Mol, Gregory E. Rice, Carlos Salomón
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0124599
Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome
Cited by: 303
Author(s): Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: over 9 years ago
10.18632/oncotarget.20739
Biomarkers identified for prostate cancer patients through genome-scale screening
Cited by: 10
Author(s): Lei‐Yun Wang, Jiajia Cui, Tao Zhu, Wei Shao, Yi Zhao, Qianqian Wang, Yupeng Zhang, Ji-Chu Wu, Le Zhang
Software Mentions: 3
Published: about 7 years ago
10.1098/rspb.2018.1563
Divergence in sex peptide-mediated female post-mating responses in<i>Drosophila melanogaster</i>
Cited by: 10
Author(s): Kristina U. Wensing, Claudia Fricke
Software Mentions: 3
Published: about 6 years ago
10.1242/dmm.047803
Mutant non-coding RNA resource in mouse embryonic stem cells
Cited by: 3
Author(s): Jens Hansen, Harald von Melchner, Wolfgang Wurst
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0233896
Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions
Cited by: 12
Author(s): S. Antony Ceasar, Muthusamy Ramakrishnan, K. K. Vinod, G. Victor Roch, Hari D. Upadhyaya, Alison Baker, S. Ignacimuthu
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0228550
Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India
Cited by: 5
Author(s): Pratibha Sanjenbam, Radhika Buddidathi, Radhika Venkatesan, P. V. Shivaprasad, Deepa Agashe
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.ppat.1008010
The Klebsiella pneumoniae citrate synthase gene, gltA, influences site specific fitness during infection
Cited by: 25
Author(s): Jay Vornhagen, Yuang Sun, Paul A. Breen, Valerie Forsyth, Lili Zhao, Harry L. T. Mobley, Michael A. Bachman
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0146125
Caste-Specific and Sex-Specific Expression of Chemoreceptor Genes in a Termite
Cited by: 35
Author(s): Yuki Mitaka, Keiko Kobayashi, Alexander S. Mikheyev, Mandy M. Y. Tin, Yutaka Watanabe, Kenji Matsuura
Software Mentions: 3
Published: almost 9 years ago
10.1186/1471-2180-11-126
Protein expression dynamics during Escherichia Coli glucose-lactose diauxie
Cited by: 19
Author(s): Ekaterina Mostovenko, André M. Deelder, Magnus Palmblad
Software Mentions: 3
Published: almost 14 years ago
10.3390/ijms21124376
Metabolomics Analysis Reveals Tissue-Specific Metabolite Compositions in Leaf Blade and Traps of Carnivorous Nepenthes Plants
Cited by: 12
Author(s): Alberto Dávila-Lara, Carlos E. Rodríguez López, Sarah E. O’Connor, Axel Mithöfer
Software Mentions: 3
Published: over 4 years ago
10.1186/s13073-019-0694-y
A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation
Cited by: 41
Author(s): Hannah Demond, Zahra Anvar, Bahia Namavar Jahromi, Ángela Sparago, Ankit Verma, Maryam Davari, Luciano Calzari, Silvia Russo, Mojgan Akbarzadeh‐Jahromi, David Gabriel Monk, Simon Andrews, Andrea Riccio, Gavin Kelsey
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12864-018-4907-3
Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection
Cited by: 10
Author(s): Hongran Li, James D. Harwood, Tong‐Xian Liu, Dong Chu
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2018.01763
Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia
Cited by: 11
Author(s): Yuting Wu, Cheng‐Yu Yang, Pei‐Wen Chiang, Chwan-Lu Tseng, Hsiu‐Hui Chiu, Isaam Saeed, Bayanmunkh Baatar, D. Yu. Rogozin, Saman K. Halgamuge, А. Г. Дегерменджи, Sen‐Lin Tang
Software Mentions: 3
Published: over 6 years ago
10.3389/fimmu.2019.01177
Differential Pathogenic Th17 Profile in Mesenteric Lymph Nodes of Crohn's Disease and Ulcerative Colitis Patients
Cited by: 34
Author(s): Marwa Bsat, Laurence Chapuy, Manuel Rubio, Ramsès Wassef, Carole Richard, Frank Schwenter, Rasmy Loungnarath, Geneviève Soucy, Heena Mehta, Marika Sarfati
Software Mentions: 3
Published: over 5 years ago
10.3389/fimmu.2018.03106
Expression of the Plasma Cell Transcriptional Regulator Blimp-1 by Dark Zone Germinal Center B Cells During Periods of Proliferation
Cited by: 31
Author(s): Daniel Radtke, Oliver Bannard
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.ppat.1005211
Fundamental Roles of the Golgi-Associated Toxoplasma Aspartyl Protease, ASP5, at the Host-Parasite Interface
Cited by: 101
Author(s): Pierre‐Mehdi Hammoudi, Damien Jacot, Christina Mueller, Manlio Di Cristina, Sunil Kumar Dogga, Jean Baptiste Marq, Julia D. Romano, Nicolò Tosetti, Juan Dubrot, Yalin Emre, Matteo Lunghi, Isabelle Coppens, Masahiro Yamamoto, Daniel Sojka, Paco Pino, Dominique Soldati‐Favre
Software Mentions: 3
Published: about 9 years ago
10.1186/1471-2180-8-109
Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains
Cited by: 40
Author(s): Sergio Carilla-Latorre, Javier Calvo‐Garrido, Gareth Bloomfield, Jason Skelton, Robert R. Kay, Alasdair Ivens, José Luis Martínez, Ricardo Escalante
Software Mentions: 3
Published: over 16 years ago
10.3390/ijms21124516
IPSC-Derived Neuronal Cultures Carrying the Alzheimer’s Disease Associated TREM2 R47H Variant Enables the Construction of an Aβ-Induced Gene Regulatory Network
Cited by: 8
Author(s): Soraia Martins, Andreas Müller‐Schiffmann, Lars Erichsen, Martina Bohndorf, Wasco Wruck, Kristel Sleegers, Christine Van Broeckhoven, Carsten Korth, James Adjaye
Software Mentions: 3
Published: over 4 years ago
10.3390/ijms21103529
Soil Microbiome Response to Contamination with Bisphenol A, Bisphenol F and Bisphenol S
Cited by: 28
Author(s): Magdalena Zaborowska, Jadwiga Wyszkowska, Agata Borowik
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2015.00030
Distinct Transcriptomic Features are Associated with Transitional and Mature B-Cell Populations in the Mouse Spleen
Cited by: 35
Author(s): Eden Kleiman, Daria Salyakina, Magali de Heusch, Kristen L. Hoek, Joan M. Llanes, Iris Castro, Jacqueline A. Wright, Emily Clark, Derek M. Dykxhoorn, Enrico Capobianco, Akihiro Takeda, Jean‐Christophe Renauld, Wasif N. Khan
Software Mentions: 3
Published: almost 10 years ago
10.1186/s12866-020-01962-w
Genotyping and plant-derived glycan utilization analysis of Bifidobacterium strains from mother-infant pairs
Cited by: 2
Author(s): Zeyu Kan, Baolong Luo, Jingjing Cai, Yan Zhang, Fengwei Tian, Yuwen Ni
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2018.02836
Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System
Cited by: 45
Author(s): Jennifer Bachmann, Tabea Heimbach, Christiane Hassenrück, Gérmán A. Kopprio, Morten Hvitfeldt Iversen, Hans Peter Grossart, Astrid Gärdes
Software Mentions: 3
Published: about 6 years ago
10.1186/s12866-021-02284-1
Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin
Cited by: 3
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Anja Poehlein, Wolfgang R. Streit, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2018.01635
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
Cited by: 49
Author(s): Marie E. Kroeger, Tom O. Delmont, A. Murat Eren, Kyle Meyer, Jiarong Guo, Kiran Yasmin Khan, Jorge L. Mazza Rodrigues, Brendan J. M. Bohannan, Susannah G. Tringe, Clóvis Daniel Borges, James M. Tiedje, Siu Mui Tsai, Klaus Nüsslein
Software Mentions: 3
Published: over 6 years ago
10.1186/s12891-020-03335-w
Complications of bone transport technique using the Ilizarov method in the lower extremity: a retrospective analysis of 282 consecutive cases over 10 years
Cited by: 39
Author(s): Yanshi Liu, Maimaiaili Yushan, Zhenhui Liu, Jialin Liu, Chuang Ma, Aihemaitijiang Yusufu
Software Mentions: 3
Published: over 4 years ago
10.1093/gbe/evv144
Comparative Genomics of a Bacterivorous Green Alga Reveals Evolutionary Causalities and Consequences of Phago-Mixotrophic Mode of Nutrition
Cited by: 27
Author(s): John A. Burns, Amber Paasch, Apurva Narechania, Eun-Soo Kim
Software Mentions: 3
Published: over 9 years ago
10.3389/fmicb.2015.01537
Microbial Community Structure in the Rhizosphere of Rice Plants
Cited by: 118
Author(s): Björn Breidenbach, Judith Pump, Marc G. Dumont
Software Mentions: 3
Published: almost 9 years ago