cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s13068-014-0171-1

System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation
Cited by: 83
Author(s): Luís Valledor, Takeshi Furuhashi, Luis Recuenco-Muñoz, Stefanie Wienkoop, Wolfram Weckwerth
Software Mentions: 3
Published: almost 12 years ago

10.1186/1754-6834-4-4

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi
Cited by: 195
Author(s): Brian Christopher King, K. D. Waxman, Nicholas V Nenni, Larry P. Walker, Gary C. Bergstrom, Donna M. Gibson
Software Mentions: 3
Published: over 15 years ago

10.1016/j.celrep.2019.02.077

Oxidative Stress Triggers Selective tRNA Retrograde Transport in Human Cells during the Integrated Stress Response
Cited by: 32
Author(s): Hagen Schwenzer, Frank Jühling, Alexander L. Chu, Laura J. Pallett, Thomas F. Baumert, Mala K. Maini, Ariberto Fassati
Software Mentions: 3
Published: over 7 years ago

10.1042/BSR20204370

Identification of potential diagnostic and prognostic biomarkers for LUAD based on TCGA and GEO databases
Cited by: 22
Author(s): Qiangqiang Zheng, Shihui Min, Qinghua Zhou
Software Mentions: 3
Published: over 5 years ago

10.1186/s12964-019-0332-8

Low levels of pyruvate induced by a positive feedback loop protects cholangiocarcinoma cells from apoptosis
Cited by: 12
Author(s): Mingming Zhang, Yida Pan, Dehua Tang, Robert Dorfman, Lei Xu, Qian Zhou, Lixing Zhou, Yuming Wang, Li Yang, Yuyao Yin, Bo Kong, Helmut Frieß, Shimin Zhao, Jian‐Lin Wu, Lei Wang, Xiaoping Zou
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.16051

Identification of molecular targets for esophageal carcinoma diagnosis using miRNA-seq and RNA-seq data from The Cancer Genome Atlas: a study of 187 cases
Cited by: 29
Author(s): Jiang‐Hui Zeng, Dandan Xiong, Yu‐Yan Pang, Yu Zhang, Rongjiang Tang, Dan Luo, Gang Chen
Software Mentions: 3
Published: over 9 years ago

10.3390/biomedicines8060142

RNA Sequencing-Based Identification of Ganglioside GD2-Positive Cancer Phenotype
Cited by: 19
Author(s): Maxim Sorokin, И. В. Холоденко, Daniel V. Kalinovsky, T. V. Shamanskaya, Igor I. Doronin, Д. М. Коновалов, Aleksei Mironov, Denis Kuzmin, Daniil Nikitin, Sergey M. Deyev, Anton Buzdin, Р. В. Холоденко
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-12087-y

Gene expression meta-analysis in diffuse low-grade glioma and the corresponding histological subtypes
Cited by: 20
Author(s): Siqi Wang, Feng Jin, Wenliang Fan, Fang Liu, Yutong Zou, Xuehan Hu, Haibo Xu, Ping Han
Software Mentions: 3
Published: about 9 years ago

10.1186/s13195-020-00641-2

Diverse proteins aggregate in mild cognitive impairment and Alzheimer’s disease brain
Cited by: 20
Author(s): Devin Kepchia, Ling Huang, Richard Dargusch, Robert A. Rissman, Maxim N. Shokhirev, Wolfgang Fischer, David Schubert
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-11304-y

Dynamic Changes in the Splenic Transcriptome of Chickens during the Early Infection and Progress of Marek’s Disease
Cited by: 5
Author(s): Di Lu, Maikun Teng, Huawei Li, Huizhen Li, Shenglin Ma, Pengwei Zhao, Xiujie Li, Ruiguang Deng, Gaiping Zhang, Jun Luo
Software Mentions: 3
Published: about 9 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: about 5 years ago

10.3390/biomedicines8020019

A Multi-Omics Analysis of Bone Morphogenetic Protein 5 (BMP5) mRNA Expression and Clinical Prognostic Outcomes in Different Cancers Using Bioinformatics Approaches
Cited by: 23
Author(s): Md. Adnan Karim, Abdus Samad, Utpal Adhikari, Md. Ashraful Kader, Md. Masnoon Kabir, Md. Aminul Islam, Md. Nazmul Hasan
Software Mentions: 3
Published: almost 7 years ago

10.1155/2015/878546

Identification of Gene Expression Pattern Related to Breast Cancer Survival Using Integrated TCGA Datasets and Genomic Tools
Cited by: 20
Author(s): Zhenzhen Huang, Huilong Duan, Haomin Li
Software Mentions: 3
Published: almost 12 years ago

10.1093/dnares/dsy044

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1—a comparative genomics viewpoint
Cited by: 24
Author(s): Diya Sen, Karnelia Paul, Chinmay Saha, G. N. Mukherjee, Mayurakshi Nag, Samrat Ghosh, A. K. Das, A. Seal, Sucheta Tripathy
Software Mentions: 3
Published: almost 8 years ago

10.1155/2020/3075729

Comprehensive Analysis of lncRNAs Related to the Prognosis of Esophageal Cancer Based on ceRNA Network and Cox Regression Model
Cited by: 4
Author(s): Chao Li, Wu Yao, Congcong Zhao, Yang Guo, Jingjing Wei, Yuanmeng Qi, Ruoxuan Huang, Qiuyan Zhao, Changfu Hao
Software Mentions: 3
Published: almost 6 years ago

10.1155/2019/7376034

Identification of Potential Biomarkers and Survival Analysis for Head and Neck Squamous Cell Carcinoma Using Bioinformatics Strategy: A Study Based on TCGA and GEO Datasets
Cited by: 37
Author(s): Yujie Shen, Jinhui Liu, Liqing Zhang, Shikun Dong, Jiacheng Zhang, Yaqin Liu, Han Zhou, Wei Dong
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-020-0791-6

It's the fiber, not the fat: significant effects of dietary challenge on the gut microbiome
Cited by: 70
Author(s): Kathleen E. Morrison, Eldin Jašarević, Christopher D. Howard, Tracy L. Bale
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.101102

Molecular pathway activation features of pediatric acute myeloid leukemia (AML) and acute lymphoblast leukemia (ALL) cells
Cited by: 15
Author(s): Ivan Petrov, Maria Suntsova, Olga Mutorova, Maxim Sorokin, Andrew Garazha, Elena Tarasovna Ilnitskaya, Pavel Spirin, Sergey Larin, Olga Kovalchuk, Vladimir Prassolov, Alex Zhavoronkov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-017-09431-7

Biogeography shaped the metabolome of the genus Espeletia: a phytochemical perspective on an Andean adaptive radiation
Cited by: 25
Author(s): Guillermo F. Padilla-González, Mauricio Diazgranados, Fernando Batista Da Costa
Software Mentions: 3
Published: about 9 years ago

10.3390/ijms14048000

Proteins Involved in Distinct Phases of Cold Hardening Process in Frost Resistant Winter Barley (Hordeum vulgare L.) cv Luxor
Cited by: 41
Author(s): Iva Hlaváčková, Pavel Vítámvás, Jiří Šantrůček, Klára Kosová, Sylva Zelenková, Ilja Tom Prášil, Jaroslava Ovesná, Radovan Hynek, Milan Kodı́ček
Software Mentions: 3
Published: over 13 years ago

10.3390/microorganisms8010007

Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
Cited by: 20
Author(s): Korin Albert, Asha Rani, David A. Sela
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0032080

Knockdown of SF-1 and RNF31 Affects Components of Steroidogenesis, TGFβ, and Wnt/β-catenin Signaling in Adrenocortical Carcinoma Cells
Cited by: 20
Author(s): Anna Ehrlund, Philip Jonsson, Lise Lotte Vedin, Cecilia Williams, Jan Åke Gustafsson, Eckardt Treuter
Software Mentions: 3
Published: over 14 years ago

10.3390/microorganisms9040760

Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
Cited by: 10
Author(s): Tatyana V. Butina, Yu. S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Мarsel R. Kabilov, С. И. Беликов
Software Mentions: 3
Published: over 5 years ago

10.1242/bio.014308

Genome-wide ChIP-seq analysis of human TOP2B occupancy in MCF7 breast cancer epithelial cells
Cited by: 40
Author(s): Catriona Manville, Kayleigh A. Smith, Zbysław Sońdka, Holly Ashlene Rance, Simon Cockell, Ian G. Cowell, Ka Cheong Lee, Nicholas J. Morris, Kay Padget, Graham Jackson, Caroline A. Austin
Software Mentions: 3
Published: about 11 years ago

10.3390/microorganisms9040855

Use of an Alignment-Free Method for the Geographical Discrimination of GTPVs Based on the GPCR Sequences
Cited by: 0
Author(s): Tesfaye Rufael, Yang Liu, Melaku Sombo, Jacqueline Kasiiti Lichoti, Janchivdorj Erdenebaatar, Bazartseren Boldbaatar, Reingard Grabherr, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Angelika Loitsch, Delesa Damena, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 3
Published: over 5 years ago

10.1016/j.csbj.2021.04.008

Simultaneous profiling of Arabidopsis thaliana and Vibrio vulnificus MO6-24/O transcriptomes by dual RNA-seq analysis
Cited by: 5
Author(s): Yongsoon Park, Jong‐Seok Park, Mi Kyung Lee, Sung‐Hee Jung, Seon‐Kyu Kim, Choong-Min Ryu
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8070981

Comparison of Rumen Microbiota and Serum Biochemical Indices in White Cashmere Goats Fed Ensiled or Sun-Dried Mulberry Leaves
Cited by: 15
Author(s): Yaoyue Wang, Qingmiao Shen, Shu Zhong, Yulin Chen, Yuxin Yang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0173106

Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model
Cited by: 3
Author(s): Sergey Malchenko, Simone Treiger Sredni, Yingtao Bi, Naira V. Margaryan, Jerusha Boyineni, Indra Mohanam, Tadanori Tomita, Ramana V. Davuluri, Marcelo B. Soares
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms17060886

Gene Set-Based Functionome Analysis of Pathogenesis in Epithelial Ovarian Serous Carcinoma and the Molecular Features in Different FIGO Stages
Cited by: 10
Author(s): Chia Ming Chang, Chi Mu Chuang, Mong‐Lien Wang, Ming Yang, Chi-Ching Chang, Ming Shyen Yen, Shih Hwa Chiou
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms8081196

Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci
Cited by: 13
Author(s): Bruno Cavadas, Rui Camacho, Joana Ferreira, Rui M. Ferreira, Céu Figueiredo, Alvis Brāzma, Nuno A. Fonseca, Luı́sa Pereira
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.101871

Anesthesia and surgery induce cognitive dysfunction in elderly male mice: the role of gut microbiota
Cited by: 46
Author(s): Gaofeng Zhan, Hua Duan, Niannian Huang, Yue Wang, Shan Li, Zhiqiang Zhou, Ning Yang, Ruiwei Jiang, Bin Zhu, Ling Yang, Yu Fan, Hui Xu, Chun Yang, Ailin Luo
Software Mentions: 3
Published: over 7 years ago

10.3390/microorganisms9061117

Reassessment of the Columnea latent viroid (CLVd) Taxonomic Classification
Cited by: 1
Author(s): Parichate Tangkanchanapas, Annelies Haegeman, Monica Höfte, Kris De Jonghe
Software Mentions: 3
Published: over 5 years ago

10.1002/mbo3.494

wblE2 transcription factor in Streptomyces griseus S4‐7 plays an important role in plant protection
Cited by: 7
Author(s): Hyun Ji Cho, Young Chul Kwon, Da-Ran Kim, Gyeongjun Cho, Seong Won Hong, Dong-Won Bae, Youn‐Sig Kwak
Software Mentions: 3
Published: over 9 years ago

10.1038/s42003-020-01227-2

Nrf2 contributes to the weight gain of mice during space travel
Cited by: 25
Author(s): Takafumi Suzuki, Akira Uruno, Akane Yumoto, Keiko Taguchi, Mikiko Suzuki, Nobuhiko Harada, Rie Ryoke, Eriko Naganuma, Nanae Osanai, Aya Goto, Hiroko Suda, Ryan Browne, Akihito Otsuki, Fumiki Katsuoka, Michael Zorzi, Takahiro Yamazaki, Daisuke Saigusa, S. Koshiba, Takashi Nakamura, Satoshi Fukumoto, Hironobu Ikehata, Keizo Nishikawa, Norio Suzuki, Ikuo Hirano, Ritsuko Shimizu, Tetsuya Oishi, Hozumi Motohashi, Hirona Tsubouchi, Risa Okada, Takashi Kudo, Michihiko Shimomura, Thomas W. Kensler, Hiroyasu Mizuno, Masaki Shimizu, Satoru Takahashi, Dai Shiba, Masayuki Yamamoto
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms17060897

Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors
Cited by: 16
Author(s): Suna Peng, Peng Tao, Feng Xu, Aiping Wu, Weige Huo, Jinxiang Wang
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2164-14-851

Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense
Cited by: 100
Author(s): Chunqiang Li, Jiaofang Shao, Yejun Wang, Wenbin Li, Dianjing Guo, Bin Yan, Yiji Xia, Ming Peng
Software Mentions: 3
Published: almost 13 years ago

10.1186/s13100-019-0186-z

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
Cited by: 13
Author(s): Pavel Jedlička, Matej Lexa, I. Vanat, Roman Hobza, Eduard Kejnovský
Software Mentions: 3
Published: almost 7 years ago

10.1007/s10456-021-09777-7

SMAD6 transduces endothelial cell flow responses required for blood vessel homeostasis
Cited by: 18
Author(s): Dana L. Ruter, Ziqing Liu, Kimlynn M. Ngo, X Shaka, Allison Marvin, Danielle B Buglak, Elise Kidder, Victoria L. Bautch
Software Mentions: 3
Published: over 5 years ago

10.1038/s41379-021-00789-8

Recurrent novel HMGA2-NCOR2 fusions characterize a subset of keratin-positive giant cell-rich soft tissue tumors
Cited by: 19
Author(s): Abbas Agaimy, Michael Michal, Robert Stoehr, Fulvia Ferrazzi, Pavel Fabián, Michal Michal, Alessandro Franchi, Florian Haller, Andrew L. Folpe, Kemal Kösemehmetoğlu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12943-020-01301-7

Targeting CDK7 suppresses super enhancer-linked inflammatory genes and alleviates CAR T cell-induced cytokine release syndrome
Cited by: 12
Author(s): Wei Ye, Chong Li, Huifang Bian, Wei Qian, Kaizhou Jin, Tianmin Xu, Xiaomao Guo, Lu Xia, Fengtao Su
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.molcel.2017.01.030

Gene Resistance to Transcriptional Reprogramming following Nuclear Transfer Is Directly Mediated by Multiple Chromatin-Repressive Pathways
Cited by: 33
Author(s): Jérôme Jullien, Munender Vodnala, Vincent Pasque, Mami Oikawa, Kazuaki Miyamoto, George E. Allen, Sarah-Anne David, Vincent Brochard, Stan Wang, Charles R. Bradshaw, Haruhiko Koseki, Vittorio Sartorelli, Nathalie Beaujean, J. B. Gurdon
Software Mentions: 3
Published: over 9 years ago

10.1128/JVI.01367-20

Severe Human Lassa Fever Is Characterized by Nonspecific T-Cell Activation and Lymphocyte Homing to Inflamed Tissues
Cited by: 12
Author(s): Julia R Port, David M. Wozniak, Lisa Oestereich, Elisa Pallasch, Beate Becker-Ziaja, Jonas Müller, Monika Rottstegge, Catherine Olal, Sergio Gómez‐Medina, Jennifer Oyakhliome, Yemisi Ighodalo, Emmanuel Omomoh, Thomas Olokor, Donatus I Adomeh, Danny Asogun, Ephraim Ogbani-Emovon, Kristin Hartmann, Susanne Krasemann, Emily V Nelson, Beatriz Escudero-Pérez, Anita K. McElroy, Stephan Günther, César Muñoz‐Fontela
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-76688-w

Identification of immune-related genes as prognostic factors in bladder cancer
Cited by: 12
Author(s): Jie Zhu, Han Wang, Ting Ma, Yan He, Meng‐Ru Shen, Wei Song, Jingjing Wang, Jianping Shi, Mengyao Wu, Chao Liu, Wenjie Wang, Yongzhen Huang
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-017-08615-5

Genome-scale analysis identifies NEK2, DLGAP5 and ECT2 as promising diagnostic and prognostic biomarkers in human lung cancer
Cited by: 52
Author(s): Yuan-Xiang Shi, Ji‐Ye Yin, Yao Shen, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2017.00882

Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission
Cited by: 21
Author(s): Patrícia Dayane Carvalho Schaker, Leila Priscila Peters, Thaís Regiani Cataldi, Carlos Alberto Labate, Camila Caldana, Cláudia Barros Monteiro-Vitorello
Software Mentions: 3
Published: over 9 years ago

10.3390/molecules23102622

Monitoring Protein Dynamics in Protein O-Mannosyltransferase Mutants In Vivo by Tandem Fluorescent Protein Timers
Cited by: 9
Author(s): Joan Castells-Ballester, Ewa Zatorska, Matthias Meurer, Patrick Neubert, Anke Metschies, Michael Knop, Sabine Strahl
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-75438-2

Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Cited by: 30
Author(s): Josie B. Garner, Amanda J. Chamberlain, Christy Vander Jagt, Thuy Thi Thu Nguyen, Brett Mason, L. C. Marett, Brian J Leury, William J. Wales, Ben J. Hayes
Software Mentions: 3
Published: about 6 years ago

10.1186/s13024-021-00482-z

The TGFβ/Notch axis facilitates Müller cell-to-epithelial transition to ultimately form a chronic glial scar
Cited by: 15
Author(s): Federica Maria Conedera, Ana Maria Quintela Pousa, Nadia Mercader, Markus Tschopp, Volker Enzmann
Software Mentions: 3
Published: about 5 years ago

10.1016/j.celrep.2019.11.034

Compromised Metabolic Reprogramming Is an Early Indicator of CD8+ T Cell Dysfunction during Chronic Mycobacterium tuberculosis Infection
Cited by: 48
Author(s): Sarah Russell, Dirk A. Lamprecht, Tawanda Mandizvo, Terrence T. Jones, Vanessa Naidoo, Kelvin W Addicott, Chivonne Moodley, Bongani Ngcobo, David K. Crossman, Gordon Wells, Adrie J. C. Steyn
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13024-018-0280-6

The Trem2 R47H Alzheimer’s risk variant impairs splicing and reduces Trem2 mRNA and protein in mice but not in humans
Cited by: 83
Author(s): Xianyuan Xiang, Thomas M. Piers, Benedikt Wefers, Kaichuan Zhu, Anna Mallach, Bettina Brunner, Gernot Kleinberger, Wilbur M. Song, Marco Colonna, Jochen Herms, Wolfgang Wurst, Jennifer M. Pocock, Christian Haass
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2019.01642

Identification of Traits Contributing to High and Stable Yields in Different Soybean Varieties Across Three Chinese Latitudes
Cited by: 32
Author(s): Minmin Li, Ying Liu, Wang Chun-sheng, Xue Yang, Dongmei Li, Xiaoming Zhang, Chongjing Xu, Zhang Yan, Wenbin Li, Lin Zhao
Software Mentions: 3
Published: almost 7 years ago

10.1002/1878-0261.12753

Identification of BLNK and BTK as mediators of rituximab‐induced programmed cell death by CRISPR screens in GCB‐subtype diffuse large B‐cell lymphoma
Cited by: 15
Author(s): Emil Aagaard Thomsen, Anne Bruun Rovsing, Mads Valdemar Anderson, Hanne Due, Jinrong Huang, Yonglun Luo, Karen Dybkær, Jacob Giehm Mikkelsen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-72828-4

Pax6 modulates intra-retinal axon guidance and fasciculation of retinal ganglion cells during retinogenesis
Cited by: 14
Author(s): Soundararajan Lalitha, Budhaditya Basu, Surya Suresh, Vadakkath Meera, Paul Ann Riya, Surendran Parvathy, Ani V. Das, Krishnankutty C. Sivakumar, Shijulal Nelson-Sathi, Jackson James
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago

10.1186/s12859-017-1575-2

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
Cited by: 16
Author(s): Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0065793

Plasmidome-Analysis of ESBL-Producing Escherichia coli Using Conventional Typing and High-Throughput Sequencing
Cited by: 41
Author(s): Alma Brolund, Oscar Franzén, Öjar Melefors, Karin Tegmark-Wisell, Linus Sandegren
Software Mentions: 3
Published: over 13 years ago

10.3389/fpls.2017.00362

Transcriptome Analysis of the Melon-Fusarium oxysporum f. sp. melonis Race 1.2 Pathosystem in Susceptible and Resistant Plants
Cited by: 28
Author(s): Maria Silvia Sebastiani, Paolo Bagnaresi, S. Sestili, Chiara Biselli, Antonella Zechini, Luigi Orrù, Luigi Cattivelli, N. Ficcadenti
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2015.01238

The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots
Cited by: 45
Author(s): Nanette Christie, Peri A Tobias, Sanushka Naidoo, Carsten Külheim
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep42702

Aging and serum exomiR content in women-effects of estrogenic hormone replacement therapy
Cited by: 23
Author(s): Reeta Kangas, Timo Törmäkangas, Vidal Fey, Juha Pursiheimo, Ilkka Miinalainen, Markku Alén, Jaakko Kaprio, Sarianna Sipilä, Anna‐Marja Säämänen, Vuokko Kovanen, Eija K. Laakkonen
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms19092657

Comparative Transcriptomics Identifies Novel Genes and Pathways Involved in Post-Traumatic Osteoarthritis Development and Progression
Cited by: 26
Author(s): Aimy Sebastian, Jiun Chiun Chang, Melanie E. Mendez, Deepa K. Murugesh, Sarah Hatsell, Aris N. Economides, Blaine A. Christiansen, Gabriela G. Loots
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-69422-z

Significant correlation between plasma proteome profile and pain intensity, sensitivity, and psychological distress in women with fibromyalgia
Cited by: 26
Author(s): Karin Wåhlén, Malin Ernberg, Eva Kosek, Kaisa Mannerkorpi, Björn Gerdle, Bijar Ghafouri
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-14-895

Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation
Cited by: 52
Author(s): Adam B. Olson, Heather Kent, Christopher D. Sibley, Margot E. Grinwis, Philip Mabon, Claude Ouellette, Shari Tyson, Morag Graham, Shaun Tyler, Gary Van Domselaar, Michael G. Surette, Cindi R. Corbett
Software Mentions: 3
Published: almost 13 years ago

10.18632/oncotarget.8148

Challenges in detecting pre-malignant pancreatic lesions during acute pancreatitis using a serum microRNA assay: a study based on KrasG12D transgenic mice
Cited by: 8
Author(s): Xiafei Hong, Jie Zhang, Qiao Wu, Wenze Wang, Adam Yongxin Ye, Wei Song, Hongmei Dai, Xiaohong Wang, Fan Wu, Lei You, Wenming Wu, Yupei Zhao
Software Mentions: 3
Published: over 10 years ago

10.1186/s12985-014-0236-6

Differential regulation of cytotoxicity pathway discriminating between HIV, HCV mono- and co-infection identified by transcriptome profiling of PBMCs
Cited by: 4
Author(s): Jing Qin Wu, Monica Miranda Saksena, Vincent Soriano, Eugenia Vispo, Nitin K. Saksena
Software Mentions: 3
Published: almost 12 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpls.2018.00968

QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15
Cited by: 38
Author(s): Fengping Yuan, Qingdong Zeng, Jianhui Wu, Qilin Wang, Zujun Yang, Bang-Ping Liang, Xinhong Chen
Software Mentions: 3
Published: over 8 years ago

10.1038/srep41502

Conversion from long-term cultivated wheat field to Jerusalem artichoke plantation changed soil fungal communities
Cited by: 8
Author(s): Xingang Zhou, Jianhui Zhang, Danmei Gao, Huan Gao, Meiyu Guo, Li Li, Zhao MengLiang, Fengzhi Wu
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12864-021-07655-6

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Author(s): Virginia Mwape, Fredrick M. Mobegi, Roshan Regmi, Toby E. Newman, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
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Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep41238

Patient-specific hepatocyte-like cells derived from induced pluripotent stem cells model pazopanib-mediated hepatotoxicity
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Author(s): Yukti Choudhury, Yi‐Chin Toh, Jiangwa Xing, Yinghua Qu, Jonathan Poh, Huan Li, Hui Shan Tan, Ravindran Kanesvaran, Hanry Yu, Min‐Han Tan
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0164964

Morphological and Molecular Characterization of Human Dermal Lymphatic Collectors
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Author(s): Viktoria Hasselhof, Anastasia Sperling, Kerstin Buttler, Philipp Ströbel, Jürgen Becker, Tin Aung, Gunther Felmerer, Jörg Wilting
Software Mentions: 3
Published: about 10 years ago

10.3389/fphar.2018.00912

Investigating the Molecular Mechanism of Aqueous Extract of Cyclocarya paliurus on Ameliorating Diabetes by Transcriptome Profiling
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Author(s): Jing Li, Mei Luo, Minghua Hu, An‐Yuan Guo, Xiangliang Yang, Qiong Zhang, Yanhong Zhu
Software Mentions: 3
Published: over 8 years ago

10.3389/fphar.2019.01695

Ex Vivo Human Adipose Tissue Derived Mesenchymal Stromal Cells (ASC) Are a Heterogeneous Population That Demonstrate Rapid Culture-Induced Changes
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Author(s): Anna Brooks, Megan Iminitoff, Eloise Williams, Tanvi Damani, Victoria Jackson-Patel, Vicky Fan, Joanna L. James, P. Rod Dunbar, Vaughan Feisst, Hilary Sheppard
Software Mentions: 3
Published: over 6 years ago

10.1186/s13071-020-04035-z

Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation
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Author(s): Katherine Omueti Ayoade, Faith R. Carranza, Woong Hee Cho, Zhu Wang, Steven A. Kliewer, David J. Mangelsdorf, Jonathan D. C. Stoltzfus
Software Mentions: 3
Published: over 6 years ago

10.3389/fphar.2020.00544

Identification of Prognostic miRNA Signature and Lymph Node Metastasis-Related Key Genes in Cervical Cancer
Cited by: 27
Author(s): Shuoling Chen, Chang Gao, Yangyuan Wu, Zunnan Huang
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
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Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: almost 10 years ago

10.3389/fpls.2017.00148

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia
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Author(s): Jing Qin Wu, Sharadha Sakthikumar, Chongmei Dong, Peng Zhang, Christina A. Cuomo, Robert Park
Software Mentions: 3
Published: almost 10 years ago

10.1007/s12253-015-9926-7

Exploring the Molecular Mechanism and Biomakers of Liver Cancer Based on Gene Expression Microarray
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Author(s): Pengfei Liu, Wenhua Jiang, He Ren, Huilai Zhang, Jihui Hao
Software Mentions: 3
Published: over 11 years ago

10.3389/fonc.2020.01109

Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
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Author(s): Tao Zhang, Yingli Nie, Haifa Xia, Yanbin Zhang, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-66728-w

GlioM&M: Web-based tool for studying circulating and infiltrating monocytes and macrophages in glioma
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Author(s): Erik R. Abels, Sybren L. N. Maas, Eric C. Tai, David T. Ting, Marike L. D. Broekman, Xandra O. Breakefield, Joseph El Khoury
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.641289

Bioinformatics Analysis of a Prognostic miRNA Signature and Potential Key Genes in Pancreatic Cancer
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Author(s): Shuoling Chen, Chang Gao, Tao Yu, Yueyang Qu, Gary Guishan Xiao, Zunnan Huang
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.175

Data reuse and the open data citation advantage
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Author(s): Heather Piwowar
Software Mentions: 3
Published: about 13 years ago

10.3389/fonc.2018.00368

Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer
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Author(s): Leilei Xia, Han Wang, Shengyun Cai, Xiaoling Su, Jizi Shen, Meng Qi, Yu Chen, Li Li, Jiuqiong Yan, Caihong Zhang, Man Xu
Software Mentions: 3
Published: about 8 years ago

10.18632/aging.202997

Identification of potential autophagy-associated lncRNA in prostate cancer
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Author(s): Jun Li, Hong Du, Wenqiang Chen, Mingxing Qiu, Peng He, Zhiwei Ma
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.607047

Genome-Wide Identification and Analysis of the Methylation of lncRNAs and Prognostic Implications in the Glioma
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Author(s): Yijie He, Lidan Wang, Jing Tang, Zhijie Han
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.1602

Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene
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Author(s): Hans Verstraelen, Ramiro Vílchez-Vargas, Fabian Desimpel, Ruy Jáuregui, Nele Vankeirsbilck, Steven Weyers, Rita Verhelst, Petra De Sutter, Dietmar H. Pieper, Tom Van de Wiele
Software Mentions: 3
Published: almost 11 years ago

10.3389/fonc.2020.554759

Integrated Analysis of lncRNA–Mediated ceRNA Network in Lung Adenocarcinoma
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Author(s): Xianxian Wu, Zhilin Sui, Hongdian Zhang, Ying Wang, Zhentao Yu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0228982

Cloacal bacterial communities of tree swallows (Tachycineta bicolor): Similarity within a population, but not between pair-bonded social partners
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Author(s): Jessica Hernandez, Camilo Escallón, Daniel Medina, Ben J. Vernasco, Jenifer B. Walke, Lisa K. Belden
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12870-015-0555-9

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid
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Author(s): Annaliese S. Mason, Junko Takahira, Chhaya Atri, Birgit Samans, Alice Hayward, Wallace Cowling, Jacqueline Batley, Matthew N. Nelson
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0135627

Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering
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Author(s): Alica Chroňáková, Brigitte Schloter-Hai, Viviane Radl, David Endesfelder, Christopher Quince, Dana Elhottová, Miloslav Šimek, Michael Schloter
Software Mentions: 3
Published: over 11 years ago

10.1186/s12864-016-3237-6

Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe
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Author(s): Yuriko Harigaya, Roy Parker
Software Mentions: 3
Published: about 10 years ago

10.1186/s12864-016-3203-3

Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology
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Author(s): Robert Jackson, Bruce A. Rosa, Sonia Lameiras, Sean Cuninghame, Josee Bernard, Wely B. Floriano, Paul F. Lambert, Alain Nicolas, Ingeborg Zehbe
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2020.00105

ATR-FTIR Microspectroscopy Brings a Novel Insight Into the Study of Cell Wall Chemistry at the Cellular Level
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Author(s): Clément Cuello, Paul J. Marchand, Françoise Laurans, Camille Grand-Perret, Véronique Laine-Prade, Gilles Pilate, Annabelle Déjardin
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Published: over 6 years ago

10.3389/fnut.2020.553674

Circulating Branched Chain Amino Acid Concentrations Are Higher in Dairy-Avoiding Females Following an Equal Volume of Sheep Milk Relative to Cow Milk: A Randomized Controlled Trial
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Author(s): Amber M. Milan, Linda M. Samuelsson, Aahana Shrestha, Pankaja Sharma, Linda Day, David Cameron‐Smith
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
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Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.11574

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer
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Author(s): David P. Jacobson, Kathleen Moore, Camille C. Gunderson, M. Rowland, Rita M. Austin, Tanvi P. Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.5705

Variations in the reproductive strategies of three populations of Phrynocephalus helioscopus in China
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Author(s): Tao Liang, Zhengxin Lu, Wenfeng He, Xiao Li-rong, Lei Shi
Software Mentions: 3
Published: about 8 years ago

10.3389/fnmol.2017.00283

RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription Factor Fezf2 in the Mature Motor Cortex
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Author(s): Alison J Clare, Hollie E. Wicky, Ruth M. Empson, Stephanie M. Hughes
Software Mentions: 3
Published: about 9 years ago

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