10.1128/JVI.01367-20

Severe Human Lassa Fever Is Characterized by Nonspecific T-Cell Activation and Lymphocyte Homing to Inflamed Tissues
Cited by: 12
Author(s): Julia R Port, David M. Wozniak, Lisa Oestereich, Elisa Pallasch, Beate Becker-Ziaja, Jonas Müller, Monika Rottstegge, Catherine Olal, Sergio Gómez‐Medina, Jennifer Oyakhliome, Yemisi Ighodalo, Emmanuel Omomoh, Thomas Olokor, Donatus I Adomeh, Danny Asogun, Ephraim Ogbani-Emovon, Kristin Hartmann, Susanne Krasemann, Emily V Nelson, Beatriz Escudero-Pérez, Anita K. McElroy, Stephan Günther, César Muñoz‐Fontela
Software Mentions: 3
Published: almost 6 years ago

10.1038/srep44131

Vascular transcriptome profiling identifies Sphingosine kinase 1 as a modulator of angiotensin II-induced vascular dysfunction
Cited by: 36
Author(s): Mateusz Siedliński, Ryszard Nosalski, Piotr Szczepaniak, Agnieszka H. Ludwig-Gałęzowska, T. Mikołajczyk, Magdalena Filip, Grzegorz Osmenda, G. Wilk, Michał Nowak, Paweł Wołkow, Tomasz J. Guzik
Software Mentions: 3
Published: over 9 years ago

10.1099/mic.0.000550

Whole genome transcriptomics reveals global effects including up-regulation of Francisella pathogenicity island gene expression during active stringent response in the highly virulent Francisella tularensis subsp. tularensis SCHU S4
Cited by: 11
Author(s): Amber L. Murch, Paul Skipp, Peter L. Roach, Petra C. F. Oyston
Software Mentions: 3
Published: almost 9 years ago

10.1038/srep42702

Aging and serum exomiR content in women-effects of estrogenic hormone replacement therapy
Cited by: 23
Author(s): Reeta Kangas, Timo Törmäkangas, Vidal Fey, Juha Pursiheimo, Ilkka Miinalainen, Markku Alén, Jaakko Kaprio, Sarianna Sipilä, Anna‐Marja Säämänen, Vuokko Kovanen, Eija K. Laakkonen
Software Mentions: 3
Published: over 9 years ago

10.1242/dmm.047803

Mutant non-coding RNA resource in mouse embryonic stem cells
Cited by: 3
Author(s): Jens Hansen, Harald von Melchner, Wolfgang Wurst
Software Mentions: 3
Published: over 5 years ago

10.1111/acel.12707

Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pgen.1007238

EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum
Cited by: 68
Author(s): Seijiro Ono, Hua Liu, Katsutoshi Tsuda, Eigo Fukai, Keisuke Tanaka, Takuji Sasaki, Ken–Ichi Nonomura
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-020-0791-6

It's the fiber, not the fat: significant effects of dietary challenge on the gut microbiome
Cited by: 70
Author(s): Kathleen E. Morrison, Eldin Jašarević, Christopher D. Howard, Tracy L. Bale
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202997

Identification of potential autophagy-associated lncRNA in prostate cancer
Cited by: 6
Author(s): Jun Li, Hong Du, Wenqiang Chen, Mingxing Qiu, Peng He, Zhiwei Ma
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0233064

Transcriptome analysis of Catarina scallop (Argopecten ventricosus) juveniles treated with highly-diluted immunomodulatory compounds reveals activation of non-self-recognition system
Cited by: 9
Author(s): Jesús Antonio López‐Carvallo, José Manuel Mazón‐Suástegui, Miguel Ángel Hernández‐Oñate, Dariel Tovar‐Ramírez, Fernando Abasolo‐Pacheco, Rosa María Morelos‐Castro, Guadalupe Fabiola Arcos‐Ortega
Software Mentions: 3
Published: over 6 years ago

10.15252/embj.201696056

A novel microglial subset plays a key role in myelinogenesis in developing brain
Cited by: 316
Author(s): Agnieszka Włodarczyk, Inge R. Holtman, Martin Krueger, Nir Yogev, Julia Bruttger, Reza Khorooshi, Anouk Benmamar‐Badel, Jelkje J. de Boer-Bergsma, Nellie Anne Martin, Khalad Karram, Isabella Kramer, Erik Boddeke, Ari Waisman, Bart J. L. Eggen, Trevor Owens
Software Mentions: 3
Published: almost 9 years ago

10.15252/embj.201592383

Cytokine‐induced megakaryocytic differentiation is regulated by genome‐wide loss of a <scp>uSTAT</scp> transcriptional program
Cited by: 67
Author(s): Hyun Jung Park, Juan Li, Rebecca Hannah, Simon C. Biddie, Ana Leal-Cervantes, Kristina Kirschner, David Flores Santa Cruz, Veronika Sexl, Berthold Göttgens, Anthony Green
Software Mentions: 3
Published: over 10 years ago

10.1186/s12935-020-01309-5

Increased expression of YTHDF1 and HNRNPA2B1 as potent biomarkers for melanoma: a systematic analysis
Cited by: 28
Author(s): Tengda Li, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.5705

Variations in the reproductive strategies of three populations of <i>Phrynocephalus helioscopus</i> in China
Cited by: 3
Author(s): Tao Liang, Zhengxin Lu, Wenfeng He, Xiao Li-rong, Lei Shi
Software Mentions: 3
Published: almost 8 years ago

10.18632/aging.101871

Anesthesia and surgery induce cognitive dysfunction in elderly male mice: the role of gut microbiota
Cited by: 46
Author(s): Gaofeng Zhan, Hua Duan, Niannian Huang, Yue Wang, Shan Li, Zhiqiang Zhou, Ning Yang, Ruiwei Jiang, Bin Zhu, Ling Yang, Yu Fan, Hui Xu, Chun Yang, Ailin Luo
Software Mentions: 3
Published: over 7 years ago

10.1186/s12935-019-1052-2

Identification and analysis of long non-coding RNA related miRNA sponge regulatory network in bladder urothelial carcinoma
Cited by: 28
Author(s): Jiawu Wang, Chengyao Zhang, Yan Wu, Weiyang He, Xin Gou
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.8148

Challenges in detecting pre-malignant pancreatic lesions during acute pancreatitis using a serum microRNA assay: a study based on <i>KrasG12D</i> transgenic mice
Cited by: 8
Author(s): Xiafei Hong, Jie Zhang, Qiao Wu, Wenze Wang, Adam Yongxin Ye, Wei Song, Hongmei Dai, Xiaohong Wang, Fan Wu, Lei You, Wenming Wu, Yupei Zhao
Software Mentions: 3
Published: over 10 years ago

10.1038/srep41502

Conversion from long-term cultivated wheat field to Jerusalem artichoke plantation changed soil fungal communities
Cited by: 8
Author(s): Xingang Zhou, Jianhui Zhang, Danmei Gao, Huan Gao, Meiyu Guo, Li Li, Zhao MengLiang, Fengzhi Wu
Software Mentions: 3
Published: over 9 years ago

10.15252/emmm.201708274

Identification of potential therapeutic targets in prostate cancer through a cross‐species approach
Cited by: 30
Author(s): Sarah Jurmeister, Antonio Ramos-Montoya, Carmen Sandi, Nelma Pértega‐Gomes, Karan Wadhwa, Alastair Lamb, Mark J. Dunning, Jan Attig, Jason S. Carroll, Lee G.D. Fryer, Sérgio Luís Felisbino, David E. Neal
Software Mentions: 3
Published: over 8 years ago

10.1186/s13195-020-00641-2

Diverse proteins aggregate in mild cognitive impairment and Alzheimer’s disease brain
Cited by: 20
Author(s): Devin Kepchia, Ling Huang, Richard Dargusch, Robert A. Rissman, Maxim N. Shokhirev, Wolfgang Fischer, David Schubert
Software Mentions: 3
Published: about 6 years ago

10.1038/srep41238

Patient-specific hepatocyte-like cells derived from induced pluripotent stem cells model pazopanib-mediated hepatotoxicity
Cited by: 43
Author(s): Yukti Choudhury, Yi‐Chin Toh, Jiangwa Xing, Yinghua Qu, Jonathan Poh, Huan Li, Hui Shan Tan, Ravindran Kanesvaran, Hanry Yu, Min‐Han Tan
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.3542

Precopulatory but not postcopulatory male reproductive traits diverge in response to mating system manipulation in<i>Drosophila melanogaster</i>
Cited by: 15
Author(s): Kristina U. Wensing, Mareike Koppik, Claudia Fricke
Software Mentions: 3
Published: almost 9 years ago

10.1038/srep32590

Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica
Cited by: 61
Author(s): Alejandro Manzano-Marı́n, Amparo Latorre
Software Mentions: 3
Published: almost 10 years ago

10.3390/nu9030233

Integration of Traditional and Metabolomics Biomarkers Identifies Prognostic Metabolites for Predicting Responsiveness to Nutritional Intervention against Oxidative Stress and Inflammation
Cited by: 15
Author(s): You Jin Kim, Iksoo Huh, Ji Yeon Kim, Saejong Park, Sung Ha Ryu, Kyu Bong Kim, Suhkmann Kim, Taesung Park, Oran Kwon
Software Mentions: 3
Published: over 9 years ago

10.1038/srep24180

Population Dynamics of Bulking and Foaming Bacteria in a Full-scale Wastewater Treatment Plant over Five Years
Cited by: 21
Author(s): Xiaotao Jiang, Feng Guo, Tong Zhang
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2164-15-773

Maize protein phosphatase gene family: identification and molecular characterization
Cited by: 53
Author(s): Kaifa Wei, Si Pan
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj.11574

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer
Cited by: 11
Author(s): David P. Jacobson, Kathleen Moore, Camille C. Gunderson, M. Rowland, Rita M. Austin, Tanvi P. Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 3
Published: about 5 years ago

10.1038/srep18178

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq
Cited by: 138
Author(s): Luís R. Saraiva, Ximena Ibarra-Soria, Mona Khan, Masayo Omura, Antonio Scialdone, Peter Mombaerts, John C. Marioni, Darren W. Logan
Software Mentions: 3
Published: over 10 years ago

10.1186/s12870-015-0555-9

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid
Cited by: 20
Author(s): Annaliese S. Mason, Junko Takahira, Chhaya Atri, Birgit Samans, Alice Hayward, Wallace Cowling, Jacqueline Batley, Matthew N. Nelson
Software Mentions: 3
Published: about 11 years ago

10.12952/journal.elementa.000064

Urban microbial ecology of a freshwater estuary of Lake Michigan
Cited by: 40
Author(s): James S. Fisher, Ryan J. Newton, Deborah K. Dila, Sandra L. McLellan
Software Mentions: 3
Published: over 11 years ago

10.1038/srep17737

Lipidomics comparing DCD and DBD liver allografts uncovers lysophospholipids elevated in recipients undergoing early allograft dysfunction
Cited by: 19
Author(s): Jin Xu, Ana María Casas-Ferreira, Yun Ma, Arundhuti Sen, Min Kim, Petroula Proitsi, Maltina Shkodra, Maria Tena, Parthi Srinivasan, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 3
Published: over 10 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0213823

Natural and human-impacted diversity of bryophytes along an elevational gradient on an oceanic island (La Palma, Canarias)
Cited by: 4
Author(s): Raquel Hernández‐Hernández, Jürgen Kluge, Claudine Ah‐Peng, Juana María González‐Mancebo
Software Mentions: 3
Published: over 7 years ago

10.1007/s10456-021-09777-7

SMAD6 transduces endothelial cell flow responses required for blood vessel homeostasis
Cited by: 18
Author(s): Dana L. Ruter, Ziqing Liu, Kimlynn M. Ngo, X Shaka, Allison Marvin, Danielle B Buglak, Elise Kidder, Victoria L. Bautch
Software Mentions: 3
Published: over 5 years ago

10.1111/1462-2920.15546

A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon <i>Archaeoglobus fulgidus</i>
Cited by: 9
Author(s): Cornelia U. Welte, R.M. de Graaf, Paula Dalcin Martins, Robert S. Jansen, Mike S. M. Jetten, Julia M. Kurth
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-021-02919-5

Superoxide dismutase (SOD) as a selection criterion for triticale grain yield under drought stress: a comprehensive study on genomics and expression profiling, bioinformatics, heritability, and phenotypic variability
Cited by: 39
Author(s): Armin Saed-Moucheshi, Fatemeh Sohrabi, Elham Fasihfar, Fatemeh Baniasadi, Mehrnaz Riasat, Ali-Akbar Mozafari
Software Mentions: 3
Published: over 5 years ago

10.1264/jsme2.ME19077

Distribution of SNSs in Mimivirus Genomes and the Classification of Mimiviruses Isolated from Japan
Cited by: 1
Author(s): Motohiro Akashi, Masaharu Takemura
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0119741

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance
Cited by: 12
Author(s): Silvia Pajares, Valeria Souza, Luis E. Eguiarte
Software Mentions: 3
Published: over 11 years ago

10.1038/srep17141

Preterm gut microbiota and metabolome following discharge from intensive care
Cited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13072-018-0212-2

CRX directs photoreceptor differentiation by accelerating chromatin remodeling at specific target sites
Cited by: 31
Author(s): Philip A. Ruzycki, Xiaodong Zhang, Shiming Chen
Software Mentions: 3
Published: about 8 years ago

10.7554/eLife.30496

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes
Cited by: 53
Author(s): Yasmina Serroukh, Chunyan Gu-Trantien, Baharak Hooshiar Kashani, Matthieu Defrance, Thien‐Phong Vu Manh, Abdulkader Azouz, Aurélie Detavernier, Alice Hoyois, Jishnu Das, Martin Bizet, Émeline Pollet, Tressy Tabbuso, Emilie Calonne, Klaas P. J. M. van Gisbergen, Marc Dalod, François Fuks, Stanislas Goriely, Arnaud Marchant
Software Mentions: 3
Published: over 8 years ago

10.1038/srep16350

Sample storage conditions significantly influence faecal microbiome profiles
Cited by: 329
Author(s): Jocelyn M. Choo, Lex E. X. Leong, Geraint B. Rogers
Software Mentions: 3
Published: almost 11 years ago

10.1186/s40001-021-00586-8

NR4A3 and CCL20 clusters dominate the genetic networks in CD146+ blood cells during acute myocardial infarction in humans
Cited by: 3
Author(s): Yanhui Wang, Chen-Xin Li, Jessica M. Stephenson, Sean P. Marrelli, Yanming Kou, Dong Meng, Ting Wu
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.ccell.2018.03.003

Molecular Signatures of Regression of the Canine Transmissible Venereal Tumor
Cited by: 33
Author(s): Dan Frampton, Hagen Schwenzer, Gabriele Marino, Lee M. Butcher, Gabriele Pollara, János Kriston-Vizi, Cristina Venturini, Rachel N. Austin, Karina Ferreira de Castro, Robin Ketteler, Benjamin M. Chain, Richard A. Goldstein, Robin A. Weiss, Stephan Beck, Ariberto Fassati
Software Mentions: 3
Published: over 8 years ago

10.1007/s00330-021-07693-4

Reliability of NI-RADS criteria in the interpretation of contrast-enhanced magnetic resonance imaging considering the potential role of diffusion-weighted imaging
Cited by: 5
Author(s): Fabian Henry Jürgen Elsholtz, Christoph Erxleben, Hans-Christian Bauknecht, Patrick Dinkelborg, Kilian Kreutzer, Bernd Hamm, Stefan M. Niehues
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.20739

Biomarkers identified for prostate cancer patients through genome-scale screening
Cited by: 10
Author(s): Lei‐Yun Wang, Jiajia Cui, Tao Zhu, Wei Shao, Yi Zhao, Qianqian Wang, Yupeng Zhang, Ji-Chu Wu, Le Zhang
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12864-020-6570-8

MicroRNA expression profile analysis in sperm reveals hsa-mir-191 as an auspicious omen of in vitro fertilization
Cited by: 37
Author(s): Hua Xu, Xin Wang, Zhikai Wang, Jianhui Li, Zhiming Xu, Maohua Miao, Guowu Chen, Xiang-Dong Lei, Jun Wu, Huijuan Shi, Ke Wang, Tiancheng Zhang, Xiaoxi Sun
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07683-2

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms
Cited by: 11
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Belén Picó, Panagiotis Boumpas, Eleni Tsaliki, Harry S. Paris, Athanasios Tsaftaris, Apostolos Kalivas, Ιfigeneia Mellidou, Ioannis Ganopoulos
Software Mentions: 3
Published: over 5 years ago

10.1111/eva.12762

Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials
Cited by: 15
Author(s): Abigail Colclough, Jukka Corander, Samuel K. Sheppard, Sion C. Bayliss, Michiel Vos
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.42426

TRIM28 promotes HIV-1 latency by SUMOylating CDK9 and inhibiting P-TEFb
Cited by: 61
Author(s): Xiancai Ma, Tao Yang, Yong Luo, Liyang Wu, Yawen Jiang, Sifa Zheng, Ting Pan, Bingfeng Liu, Guangyan Liu, Jun Li, Fei Yu, Zhangping He, Wanying Zhang, Jinyu Yang, Liting Liang, Yuanjun Guan, Xu Zhang, Linghua Li, Weiping Cai, Xiaoping Tang, Song Gao, Kai Deng, Hui Zhang
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2229-13-14

Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem
Cited by: 34
Author(s): Hardy Hall, Brian E. Ellis
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0161967

CYR61 and TAZ Upregulation and Focal Epithelial to Mesenchymal Transition May Be Early Predictors of Barrett’s Esophagus Malignant Progression
Cited by: 6
Author(s): Joana Cardoso, Marta Mesquita, António Dias Pereira, Mónica Bettencourt-Dias, Paula Chaves, José B. Pereira-Leal
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12864-017-3663-0

Transcriptome analysis of the two unrelated fungal β-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs
Cited by: 22
Author(s): Dominik Terfehr, Tim A. Dahlmann, Ulrich Kück
Software Mentions: 3
Published: over 9 years ago

10.1186/s12870-020-02384-6

Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat
Cited by: 13
Author(s): Beáta Strejčková, Radim Čegan, Aleš Pečinka, Zbyněk Milec, Jan Šafář
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1007390

Danger signals activate a putative innate immune system during regeneration in a filamentous fungus
Cited by: 25
Author(s): Elizabeth Medina-Castellanos, José Manuel Villalobos-Escobedo, Meritxell Riquelme, Nick D. Read, Cei Abreu‐Goodger, Alfredo Herrera-Estrella
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-4510-7

Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster
Cited by: 30
Author(s): Michael P. Meers, Karen Adelman, Robert J. Duronio, Brian D. Strahl, Daniel J. McKay, A. Gregory Matera
Software Mentions: 3
Published: over 8 years ago

10.3390/microorganisms8070981

Comparison of Rumen Microbiota and Serum Biochemical Indices in White Cashmere Goats Fed Ensiled or Sun-Dried Mulberry Leaves
Cited by: 15
Author(s): Yaoyue Wang, Qingmiao Shen, Shu Zhong, Yulin Chen, Yuxin Yang
Software Mentions: 3
Published: about 6 years ago

10.1186/s12870-018-1373-7

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance
Cited by: 24
Author(s): Ana Paula Zotta Mota, Bruna Vidigal, Étienne Danchin, Roberto Coiti Togawa, Soraya C. M. Leal‐Bertioli, David J. Bertioli, Ana Cláudia Guerra Araújo, Ana Cristina Miranda Brasileiro, P. M. Guimarães
Software Mentions: 3
Published: about 8 years ago

10.3390/genes11080884

Transcriptome Profiling and Differential Gene Expression in Canine Microdissected Anagen and Telogen Hair Follicles and Interfollicular Epidermis
Cited by: 7
Author(s): Dominique J Wiener, Kátia R. Groch, Magdalena A. T. Brunner, Tosso Leeb, Vidhya Jagannathan, Monika Maria Welle
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-021-07426-3

Transcriptome analysis of the transdifferentiation of canine BMSCs into insulin producing cells
Cited by: 2
Author(s): Jinglu Wang, Pengxiu Dai, Tong Zou, Yangou Lv, Wen Zhao, Xinke Zhang, Yihua Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/genes8110310

Gut Microbiome and Putative Resistome of Inca and Italian Nobility Mummies
Cited by: 18
Author(s): Tasha M. Santiago-Rodríguez, Gino Fornaciari, Stefania Luciani, Gary A. Toranzos, Isolina Marota, Valentina Giuffra, Raúl J. Cano
Software Mentions: 3
Published: almost 9 years ago

10.7554/eLife.65306

A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme
Cited by: 26
Author(s): Katharina Eitzen, Priyamedha Sengupta, Samuel Kroll, Eric Kemen, Gunther Doehlemann
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0169805

Novel Analysis of Immune Cells from Nasal Microbiopsy Demonstrates Reliable, Reproducible Data for Immune Populations, and Superior Cytokine Detection Compared to Nasal Wash
Cited by: 47
Author(s): Simon P. Jochems, Katherine Piddock, Jamie Rylance, Hugh Adler, Beatriz F. Carniel, Andrea Collins, Jenna F. Gritzfeld, Carole A. Hancock, Helen Hill, Jesús Reiné, Alexandra L. Seddon, Carla Solórzano, Syba Sunny, A Zachary Trimble, A. Wright, Seher Zaidi, Stephen B. Gordon, Daniela M. Ferreira
Software Mentions: 3
Published: over 9 years ago

10.7554/eLife.51406

Proteome profile of peripheral myelin in healthy mice and in a neuropathy model
Cited by: 52
Author(s): Sophie B Siems, Olaf Jahn, Maria A Eichel, Nirmal Kannaiyan, Lai Man Natalie Wu, Diane L. Sherman, Kathrin Kusch, Dörte Hesse, Ramona B. Jung, Robert Fledrich, Michael W. Sereda, Moritz J. Rossner, Peter Brophy, Hauke Werner
Software Mentions: 3
Published: over 6 years ago

10.3390/genes8100268

Low-Grade Dysplastic Nodules Revealed as the Tipping Point during Multistep Hepatocarcinogenesis by Dynamic Network Biomarkers
Cited by: 10
Author(s): Lina Lu, Zhenfei Jiang, Yulin Dai, Luonan Chen
Software Mentions: 3
Published: almost 9 years ago

10.1111/os.12519

Discovery and Identification of Serum Succinyl‐Proteome for Postmenopausal Women with Osteoporosis and Osteopenia
Cited by: 1
Author(s): Lili Zhang, Chunwen Li, Kang Liu, Zhong Liu, Bo Liang, Yiran Yang, Xiaoyi Shi
Software Mentions: 3
Published: almost 7 years ago

10.3389/fbioe.2020.00047

Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium
Cited by: 14
Author(s): Thibault Godard, Daniela Zühlke, Georg Richter, Melanie M. Wall, Manfred Rohde, Katharina Riedel, Ignacio Poblete‐Castro, Rainer Krull, Rebekka Biedendieck
Software Mentions: 3
Published: over 6 years ago

10.1534/g3.119.400037

Evolution of Antibiotic Synthesis Gene Clusters in the <i>Streptomyces globisporus</i> TFH56, Isolated from Tomato Flower
Cited by: 6
Author(s): Gyeongjun Cho, Youn‐Sig Kwak
Software Mentions: 3
Published: about 7 years ago

10.1186/s12891-020-03335-w

Complications of bone transport technique using the Ilizarov method in the lower extremity: a retrospective analysis of 282 consecutive cases over 10 years
Cited by: 39
Author(s): Yanshi Liu, Maimaiaili Yushan, Zhenhui Liu, Jialin Liu, Chuang Ma, Aihemaitijiang Yusufu
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.175

Data reuse and the open data citation advantage
Cited by: 358
Author(s): Heather Piwowar
Software Mentions: 3
Published: almost 13 years ago

10.1534/g3.118.200910

Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr <i>Salvelinus fontinalis</i>
Cited by: 18
Author(s): Ben J. G. Sutherland, Jenni M. Prokkola, Céline Audet, Louis Bernatchez
Software Mentions: 3
Published: over 7 years ago

10.1534/g3.117.040105

Extensive Copy Number Variation in Fermentation-Related Genes Among<i>Saccharomyces cerevisiae</i>Wine Strains
Cited by: 46
Author(s): Jacob L. Steenwyk, Antonis Rokas
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-016-2906-9

An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC)
Cited by: 18
Author(s): Yuanyuan Wang, Xingyi Guo, Michael J. Bray, Zhiyong Ding, Zhongming Zhao
Software Mentions: 3
Published: about 10 years ago

10.1186/s12864-018-5207-7

Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum
Cited by: 30
Author(s): Justin Gibbons, Katrina A. Button-Simons, Swamy Rakesh Adapa, Suzanne Li, Maxwell Pietsch, Min Zhang, Xiangyun Liao, John Adams, Michael T. Ferdig, Rays H. Y. Jiang
Software Mentions: 3
Published: almost 8 years ago

10.3389/fvets.2021.666512

Tandem Mass Tag-Based Quantitative Proteomic Analysis of Chicken Bursa of Fabricius Infected With Reticuloendotheliosis Virus
Cited by: 3
Author(s): Dahan Yang, Xiaoping Lv, Shujun Zhang, Shangen Zheng
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2180-8-109

Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains
Cited by: 40
Author(s): Sergio Carilla-Latorre, Javier Calvo‐Garrido, Gareth Bloomfield, Jason Skelton, Robert R. Kay, Alasdair Ivens, José Luis Martínez, Ricardo Escalante
Software Mentions: 3
Published: about 18 years ago

10.3389/fcimb.2019.00403

Mapping Alterations Induced by Long-Term Axenic Cultivation of Leishmania amazonensis Promastigotes With a Multiplatform Metabolomic Fingerprint Approach
Cited by: 1
Author(s): Frederico Crepaldi, Juliano Simões de Toledo, Anderson Oliveira do Carmo, Leopoldo Ferreira Marques Machado, Daniela Diniz Viana de Brito, Ângela Vieira Serufo, Ana Paula Martins Almeida, Laser Antônio Machado Oliveira, Tiago Queiroga Nery Ricotta, Douglas de Souza Moreira, Silvane Maria Fonseca Murta, Ariane Barros Diniz, Gustavo B. Menezes, Ángeles López‐Gonzálvez, Coral Barbas, Ana Paula Fernandes
Software Mentions: 3
Published: over 6 years ago

10.3389/fcimb.2021.662404

Proteomic Analysis of Copper Toxicity in Human Fungal Pathogen Cryptococcus neoformans
Cited by: 4
Author(s): Tianshu Sun, Yanjian Li, Yingxing Li, Hailong Li, Yiyi Gong, Jianhuang Wu, Ya-Ting Ning, Chen Ding, Yingchun Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fpsyt.2021.632519

The Impact of COVID-19 Pandemic and Lockdown on Alcohol Consumption: A Perspective From Hair Analysis
Cited by: 9
Author(s): Eugenio Alladio, Lia Visintin, Tonia Lombardo, Roberto Testi, Alberto Salomone, Marco Vincenti
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
Cited by: 19
Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-80824-x

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism
Cited by: 14
Author(s): Lara Durán-Trío, Gabriella Fernandes-Pires, Dunja Simicic, Jocelyn Grosse, Clothilde Roux-Petronelli, Stephen J. Bruce, Pierre‐Alain Binz, Carmen Sandi, Cristina Cudalbu, Olivier Braissant
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101578

High expression of the breast cancer susceptibility gene BRCA1 in long-lived termite kings
Cited by: 9
Author(s): Eisuke Tasaki, Yuki Mitaka, Tomonari Nozaki, Keiko Kobayashi, Kenji Matsuura, Yoshihito Iuchi
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2020.00105

ATR-FTIR Microspectroscopy Brings a Novel Insight Into the Study of Cell Wall Chemistry at the Cellular Level
Cited by: 14
Author(s): Clément Cuello, Paul J. Marchand, Françoise Laurans, Camille Grand-Perret, Véronique Laine-Prade, Gilles Pilate, Annabelle Déjardin
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2017.00148

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia
Cited by: 28
Author(s): Jing Qin Wu, Sharadha Sakthikumar, Chongmei Dong, Peng Zhang, Christina A. Cuomo, Robert Park
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: over 9 years ago

10.3389/fcimb.2020.00129

Pathobionts in the Vaginal Microbiota: Individual Participant Data Meta-Analysis of Three Sequencing Studies
Cited by: 26
Author(s): Janneke van de Wijgert, Marijn C. Verwijs, A. Christina Gill, Hanneke Borgdorff, Charlotte van der Veer, Philippe Mayaud
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0148771

Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Cited by: 41
Author(s): Venkata Suresh Bonthala, Katie Mayes, Joanna Moreton, Martin Blythe, Victoria Wright, Sean May, Festo Massawe, Sean Mayes, Jamie Twycross
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2018.00968

QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15
Cited by: 38
Author(s): Fengping Yuan, Qingdong Zeng, Jianhui Wu, Qilin Wang, Zujun Yang, Bang-Ping Liang, Xinhong Chen
Software Mentions: 3
Published: about 8 years ago

10.3389/fcimb.2018.00160

Group A Streptococcus M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP
Cited by: 20
Author(s): Amelia T. Soderholm, Timothy C. Barnett, Othmar Korn, Tania Rivera-Hernandez, Lisa M. Seymour, Benjamin L. Schulz, Victor Nizet, Christine A. Wells, Matthew J. Sweet, Mark J. Walker
Software Mentions: 3
Published: over 8 years ago

10.1186/s40529-021-00314-9

Agricultural management practices influence the soil enzyme activity and bacterial community structure in tea plantations
Cited by: 13
Author(s): Yu-Pei Chen, Chia-Fang Tsai, Punchappady Devasya Rekha, Sudeep D. Ghate, Hsi‐Yuan Huang, Yi-Han Hsu, Li-Ling Liaw, Chiu-Chung Young
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-5460-4

RNA-sequencing analysis of shell gland shows differences in gene expression profile at two time-points of eggshell formation in laying chickens
Cited by: 22
Author(s): Samiullah Khan, Shu‐Biao Wu, Juliet R. Roberts
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-76688-w

Identification of immune-related genes as prognostic factors in bladder cancer
Cited by: 12
Author(s): Jie Zhu, Han Wang, Ting Ma, Yan He, Meng‐Ru Shen, Wei Song, Jingjing Wang, Jianping Shi, Mengyao Wu, Chao Liu, Wenjie Wang, Yongzhen Huang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2180-11-126

Protein expression dynamics during Escherichia Coli glucose-lactose diauxie
Cited by: 19
Author(s): Ekaterina Mostovenko, André M. Deelder, Magnus Palmblad
Software Mentions: 3
Published: over 15 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0233380

Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing
Cited by: 11
Author(s): Akihiro Sakai, Mizuo Ando, Takahito Fukusumi, Shuling Ren, Chao Liu, Jesse R. Qualliotine, Sunny Haft, Sayed Sadat, Yuki Saito, Theresa Guo, Guiyin Xu, Roman Šášik, Kathleen M. Fisch, J. Silvio Gutkind, Elana J. Fertig, Alfredo A. Molinolo, Joseph A. Califano
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0109710

Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease
Cited by: 74
Author(s): HeeKuk Park, Jong Wook Shin, Sang-Gue Park, Wonyong Kim
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12864-021-07847-0

Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)
Cited by: 5
Author(s): Tao Qi, Jinping Li, Hong Wang, Xiaofan Han, Junrong Li, Jinzhe Du
Software Mentions: 3
Published: about 5 years ago