cran: gplots | Projects | Ecosyste.ms: Papers

10.3389/fonc.2018.00368

Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer
Cited by: 11
Author(s): Leilei Xia, Han Wang, Shengyun Cai, Xiaoling Su, Jizi Shen, Meng Qi, Yu Chen, Li Li, Jiuqiong Yan, Caihong Zhang, Man Xu
Software Mentions: 3
Published: about 8 years ago

10.3389/fonc.2021.641289

Bioinformatics Analysis of a Prognostic miRNA Signature and Potential Key Genes in Pancreatic Cancer
Cited by: 15
Author(s): Shuoling Chen, Chang Gao, Tao Yu, Yueyang Qu, Gary Guishan Xiao, Zunnan Huang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-016-1075-9

A novel procedure on next generation sequencing data analysis using text mining algorithm
Cited by: 10
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
Software Mentions: 3
Published: over 10 years ago

10.3389/fonc.2020.01109

Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
Cited by: 12
Author(s): Tao Zhang, Yingli Nie, Haifa Xia, Yanbin Zhang, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 3
Published: over 6 years ago

10.3389/fvets.2021.666512

Tandem Mass Tag-Based Quantitative Proteomic Analysis of Chicken Bursa of Fabricius Infected With Reticuloendotheliosis Virus
Cited by: 3
Author(s): Dahan Yang, Xiaoping Lv, Shujun Zhang, Shangen Zheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-4907-3

Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection
Cited by: 10
Author(s): Hongran Li, James D. Harwood, Tong‐Xian Liu, Dong Chu
Software Mentions: 3
Published: over 8 years ago

10.3389/fpsyt.2021.632519

The Impact of COVID-19 Pandemic and Lockdown on Alcohol Consumption: A Perspective From Hair Analysis
Cited by: 9
Author(s): Eugenio Alladio, Lia Visintin, Tonia Lombardo, Roberto Testi, Alberto Salomone, Marco Vincenti
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
Cited by: 19
Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: over 6 years ago

10.3389/fphar.2020.00544

Identification of Prognostic miRNA Signature and Lymph Node Metastasis-Related Key Genes in Cervical Cancer
Cited by: 27
Author(s): Shuoling Chen, Chang Gao, Yangyuan Wu, Zunnan Huang
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2020.00105

ATR-FTIR Microspectroscopy Brings a Novel Insight Into the Study of Cell Wall Chemistry at the Cellular Level
Cited by: 14
Author(s): Clément Cuello, Paul J. Marchand, Françoise Laurans, Camille Grand-Perret, Véronique Laine-Prade, Gilles Pilate, Annabelle Déjardin
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-66728-w

GlioM&M: Web-based tool for studying circulating and infiltrating monocytes and macrophages in glioma
Cited by: 9
Author(s): Erik R. Abels, Sybren L. N. Maas, Eric C. Tai, David T. Ting, Marike L. D. Broekman, Xandra O. Breakefield, Joseph El Khoury
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0148771

Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Cited by: 41
Author(s): Venkata Suresh Bonthala, Katie Mayes, Joanna Moreton, Martin Blythe, Victoria Wright, Sean May, Festo Massawe, Sean Mayes, Jamie Twycross
Software Mentions: 3
Published: almost 11 years ago

10.3389/fphar.2019.01695

Ex Vivo Human Adipose Tissue Derived Mesenchymal Stromal Cells (ASC) Are a Heterogeneous Population That Demonstrate Rapid Culture-Induced Changes
Cited by: 21
Author(s): Anna Brooks, Megan Iminitoff, Eloise Williams, Tanvi Damani, Victoria Jackson-Patel, Vicky Fan, Joanna L. James, P. Rod Dunbar, Vaughan Feisst, Hilary Sheppard
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2017.00148

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia
Cited by: 28
Author(s): Jing Qin Wu, Sharadha Sakthikumar, Chongmei Dong, Peng Zhang, Christina A. Cuomo, Robert Park
Software Mentions: 3
Published: almost 10 years ago

10.3389/fphar.2018.00912

Investigating the Molecular Mechanism of Aqueous Extract of Cyclocarya paliurus on Ameliorating Diabetes by Transcriptome Profiling
Cited by: 7
Author(s): Jing Li, Mei Luo, Minghua Hu, An‐Yuan Guo, Xiangliang Yang, Qiong Zhang, Yanhong Zhu
Software Mentions: 3
Published: over 8 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-020-65369-3

Measuring Cancer Hallmark Mediation of the TET1 Glioma Survival Effect with Linked Neural-Network Based Mediation Experiments
Cited by: 2
Author(s): Thomas Luechtefeld, Nole Lin, Channing J. Paller, Katherine J. Kuhns, John Laterra, Joseph Bressler
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: almost 10 years ago

10.3389/fpls.2018.00968

QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15
Cited by: 38
Author(s): Fengping Yuan, Qingdong Zeng, Jianhui Wu, Qilin Wang, Zujun Yang, Bang-Ping Liang, Xinhong Chen
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-019-5460-4

RNA-sequencing analysis of shell gland shows differences in gene expression profile at two time-points of eggshell formation in laying chickens
Cited by: 22
Author(s): Samiullah Khan, Shu‐Biao Wu, Juliet R. Roberts
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago

10.1038/s41419-018-0671-1

Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells
Cited by: 30
Author(s): Sofia B. Winge, Marlene Danner Dalgaard, Kirstine Belling, James C. Jensen, John Nielsen, Lise Aksglæde, Mikkel Heide Schierup, Søren Brunak, Niels E. Skakkebæk, Anders Juul, Ewa Rajpert‐De Meyts, Kristian Almstrup
Software Mentions: 3
Published: over 8 years ago

10.1038/cddis.2017.426

Common microRNA–mRNA interactions exist among distinct porcine iPSC lines independent of their metastable pluripotent states
Cited by: 8
Author(s): Shiqiang Zhang, Youlong Xie, Hongxia Cao, Huayan Wang
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2015.01238

The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots
Cited by: 45
Author(s): Nanette Christie, Peri A Tobias, Sanushka Naidoo, Carsten Külheim
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-021-07847-0

Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)
Cited by: 5
Author(s): Tao Qi, Jinping Li, Hong Wang, Xiaofan Han, Junrong Li, Jinzhe Du
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-62776-4

Apoptosis characterization in mononuclear blood leukocytes of HIV patients during dengue acute disease
Cited by: 2
Author(s): Amanda Torrentes-Carvalho, Juan Camilo Sánchez‐Arcila, Tamiris Azamor, Luciana Santos Barbosa, Eugênio D. Hottz, Mariana Gandini, Fernando A. Bozza, Rivaldo Venâncio da Cunha, Luciana Wernersbach Pinto, Paulo Vieira Damasco, Elzinandes Leal de Azeredo
Software Mentions: 3
Published: over 6 years ago

10.1038/cddis.2017.487

Molecular motion regulates the activity of the Mitochondrial Serine Protease HtrA2
Cited by: 20
Author(s): M. Merski, Cátia Moreira, Rui M.V. Abreu, María J. Ramos, Pedro A. Fernandes, L. Miguel Martins, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-2164-14-540

Solanum torvum responses to the root-knot nematode Meloidogyne incognita
Cited by: 38
Author(s): Paolo Bagnaresi, T. Sala, Tiziana Irdani, Cristina Scotto, Antonella Lamontanara, Massimiliano Beretta, Giuseppe Leonardo Rotino, S. Sestili, Luigi Cattivelli, E. Sabatini
Software Mentions: 3
Published: over 13 years ago

10.3389/fpls.2017.00362

Transcriptome Analysis of the Melon-Fusarium oxysporum f. sp. melonis Race 1.2 Pathosystem in Susceptible and Resistant Plants
Cited by: 28
Author(s): Maria Silvia Sebastiani, Paolo Bagnaresi, S. Sestili, Chiara Biselli, Antonella Zechini, Luigi Orrù, Luigi Cattivelli, N. Ficcadenti
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 6 years ago

10.1038/s41419-019-1570-9

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition
Cited by: 30
Author(s): Nunzio Del Gaudio, Antonella Di Costanzo, Ning Qing Liu, Lidio Conte, Antimo Migliaccio, Michiel Vermeulen, Joost H.A. Martens, Hendrik G. Stunnenberg, Angela Nebbioso, Lucia Altucci
Software Mentions: 3
Published: over 7 years ago

10.1007/s12253-015-9926-7

Exploring the Molecular Mechanism and Biomakers of Liver Cancer Based on Gene Expression Microarray
Cited by: 8
Author(s): Pengfei Liu, Wenhua Jiang, He Ren, Huilai Zhang, Jihui Hao
Software Mentions: 3
Published: over 11 years ago

10.1186/s12864-015-1450-3

The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies
Cited by: 80
Author(s): Julie Earl, Daniel Rico, Enrique Carrillo de Santa Pau, Benjamín Rodríguez-Santiago, Marinela Méndez-Pertuz, Herbert Auer, Gonzalo Vázquez Gómez, H. Barton Grossman, David G. Pisano, Wolfgang A. Schulz, Luís A. Pérez-Jurado, Alfredo Carrato, Dan Theodorescu, Stephen J. Chanock, Alfonso Valencia, Francisco X. Real
Software Mentions: 3
Published: over 11 years ago

10.3389/fpls.2017.00882

Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission
Cited by: 21
Author(s): Patrícia Dayane Carvalho Schaker, Leila Priscila Peters, Thaís Regiani Cataldi, Carlos Alberto Labate, Camila Caldana, Cláudia Barros Monteiro-Vitorello
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-018-5241-5

The impact of genome evolution on the allotetraploid Nicotiana rustica – an intriguing story of enhanced alkaloid production
Cited by: 22
Author(s): Nicolas Sierro, James N. D. Battey, Lucien Bovet, Verena Liedschulte, Sonia Ouadi, JH Thomas, Hervé Broye, Hélène Laparra, Aline Vuarnoz, Gerhard K. Lang, Simon Goepfert, Manuel C. Peitsch, Nikolai V. Ivanov
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-019-5984-7

An insight into the sialome, mialome and virome of the horn fly, Haematobia irritans
Cited by: 14
Author(s): José M. C. Ribeiro, Humberto Julio Debat, Mariana Boiani, X. Ures, Sérgio Paulo Dejato da Rocha, Martı́n Breijo
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2019.01642

Identification of Traits Contributing to High and Stable Yields in Different Soybean Varieties Across Three Chinese Latitudes
Cited by: 32
Author(s): Minmin Li, Ying Liu, Wang Chun-sheng, Xue Yang, Dongmei Li, Xiaoming Zhang, Chongjing Xu, Zhang Yan, Wenbin Li, Lin Zhao
Software Mentions: 3
Published: almost 7 years ago

10.3390/nu13010162

Application of Ligilactobacillus salivarius CECT5713 to Achieve Term Pregnancies in Women with Repetitive Abortion or Infertility of Unknown Origin by Microbiological and Immunological Modulation of the Vaginal Ecosystem
Cited by: 14
Author(s): Leónides Fernández, Irma Castro, Rebeca Arroyo, Claudio Alba, David Beltrán, Juan M. Rodríguez
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-61420-5

Eosinophil accumulation in postnatal lung is specific to the primary septation phase of development
Cited by: 17
Author(s): Lucas F. Loffredo, Mackenzie E. Coden, Brian M. Jeong, Matthew T. Walker, Kishore R. Anekalla, Ton C. Doan, Raul I. Rodriguez, M.J. Browning, Ki-Won Nam, James J. Lee, Hiam Abdala‐Valencia, Sergejs Berdnikovs
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1005748

Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes
Cited by: 91
Author(s): Jesse R. Raab, Samuel Resnick, Terry Magnuson
Software Mentions: 3
Published: almost 11 years ago

10.1186/s11658-018-0090-4

Essential genes of the macrophage response to Staphylococcus aureus exposure
Cited by: 6
Author(s): Aixia Sun, Hongwei Zhang, Feng Pang, Guifen Niu, Jianzhong Chen, Fei Chen, Jian Zhang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pcbi.1003189

A Self-Directed Method for Cell-Type Identification and Separation of Gene Expression Microarrays
Cited by: 30
Author(s): Neta S. Zuckerman, Yair Noam, Andrea Goldsmith, Peter P. Lee
Software Mentions: 3
Published: about 13 years ago

10.1186/1471-2105-9-37

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Cited by: 38
Author(s): Rekin’s Janky, Jacques van Helden
Software Mentions: 3
Published: almost 19 years ago

10.1186/s13100-019-0186-z

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
Cited by: 13
Author(s): Pavel Jedlička, Matej Lexa, I. Vanat, Roman Hobza, Eduard Kejnovský
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.celrep.2019.11.034

Compromised Metabolic Reprogramming Is an Early Indicator of CD8+ T Cell Dysfunction during Chronic Mycobacterium tuberculosis Infection
Cited by: 48
Author(s): Sarah Russell, Dirk A. Lamprecht, Tawanda Mandizvo, Terrence T. Jones, Vanessa Naidoo, Kelvin W Addicott, Chivonne Moodley, Bongani Ngcobo, David K. Crossman, Gordon Wells, Adrie J. C. Steyn
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0233380

Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing
Cited by: 11
Author(s): Akihiro Sakai, Mizuo Ando, Takahito Fukusumi, Shuling Ren, Chao Liu, Jesse R. Qualliotine, Sunny Haft, Sayed Sadat, Yuki Saito, Theresa Guo, Guiyin Xu, Roman Šášik, Kathleen M. Fisch, J. Silvio Gutkind, Elana J. Fertig, Alfredo A. Molinolo, Joseph A. Califano
Software Mentions: 3
Published: over 6 years ago

10.1016/j.celrep.2019.02.077

Oxidative Stress Triggers Selective tRNA Retrograde Transport in Human Cells during the Integrated Stress Response
Cited by: 32
Author(s): Hagen Schwenzer, Frank Jühling, Alexander L. Chu, Laura J. Pallett, Thomas F. Baumert, Mala K. Maini, Ariberto Fassati
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0109710

Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease
Cited by: 74
Author(s): HeeKuk Park, Jong Wook Shin, Sang-Gue Park, Wonyong Kim
Software Mentions: 3
Published: about 12 years ago

10.1016/j.celrep.2020.108154

Protein Stability Buffers the Cost of Translation Attenuation following eIF2α Phosphorylation
Cited by: 15
Author(s): Kim Schneider, Geoffrey M. Nelson, J. P. Watson, Jörg Morf, Maximillian M. Dalglish, Laura M. Luh, Annika Weber, Anne Bertolotti
Software Mentions: 3
Published: about 6 years ago

10.3390/microorganisms9061117

Reassessment of the Columnea latent viroid (CLVd) Taxonomic Classification
Cited by: 1
Author(s): Parichate Tangkanchanapas, Annelies Haegeman, Monica Höfte, Kris De Jonghe
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0005461

Modulation of the immune response by Fonsecaea pedrosoi morphotypes in the course of experimental chromoblastomycosis and their role on inflammatory response chronicity
Cited by: 26
Author(s): Isaque Medeiros Siqueira, Raffael Júnio Araújo de Castro, Luiza Chaves de Miranda Leonhardt, Márcio Sousa Jerônimo, A.J.M. Soares, Tainá Raiol, Christiane Nishibe, Nalvo F. Almeida, Aldo Henrique Tavares, Christian Hoffmann, Anamélia Lorenzetti Bocca
Software Mentions: 3
Published: over 9 years ago

10.3390/microorganisms8081196

Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci
Cited by: 13
Author(s): Bruno Cavadas, Rui Camacho, Joana Ferreira, Rui M. Ferreira, Céu Figueiredo, Alvis Brāzma, Nuno A. Fonseca, Luı́sa Pereira
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-59988-z

A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibility
Cited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0007397

Interplay between proinflammatory cytokines, miRNA, and tissue lesions in Anisakis-infected Sprague-Dawley rats
Cited by: 21
Author(s): Jerko Hrabar, Željka Trumbić, Ivana Bočina, Ivana Bušelić, Anamarija Vrbatović, Ivona Mladineo
Software Mentions: 3
Published: over 7 years ago

10.1111/acel.12707

Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-017-1575-2

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
Cited by: 16
Author(s): Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-51673-0

Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum
Cited by: 15
Author(s): Meenu Rohini Rajan, Matúš Soták, Fredrik Barrenäs, Tong Shen, Kamil Borkowski, Nicholas J. Ashton, Christina Biörserud, Tomas Lindahl, Sofia Ramström, Michael Schöll, Per Lindahl, Oliver Fiehn, John W. Newman, Rosie Perkins, Ville Wallenius, Stephan Lange, Emma Börgeson
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0158768

Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning
Cited by: 8
Author(s): Chunlei Yang, Lan Mi, Xianqiao Hu, Jianxin Liu, Jiakun Wang
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.175

Data reuse and the open data citation advantage
Cited by: 358
Author(s): Heather Piwowar
Software Mentions: 3
Published: about 13 years ago

10.1038/s41598-019-50272-3

Patterns of Anatomic Injury in Critically Injured Combat Casualties: A Network Analysis
Cited by: 20
Author(s): Jud C. Janak, Edward L. Mazuchowski, Russ S Kotwal, Zsolt T. Stockinger, Jeffrey T. Howard, Frank K. Butler, Jonathan A. Sosnov, Jennifer M Gurney, Stacy Shackelford
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0213220

miR-7977 inhibits the Hippo-YAP signaling pathway in bone marrow mesenchymal stromal cells
Cited by: 20
Author(s): Masahiro Yoshida, Hyogo Horiguchi, Shohei Kikuchi, Satoshi Iyama, Hiroshi Ikeda, Akinobu Goto, Yutaka Kawano, Kazuyuki Murase, Kohichi Takada, Koji Miyanishi, Junji Kato, Masayoshi Kobune
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms21124516

IPSC-Derived Neuronal Cultures Carrying the Alzheimer’s Disease Associated TREM2 R47H Variant Enables the Construction of an Aβ-Induced Gene Regulatory Network
Cited by: 8
Author(s): Soraia Martins, Andreas Müller‐Schiffmann, Lars Erichsen, Martina Bohndorf, Wasco Wruck, Kristel Sleegers, Christine Van Broeckhoven, Carsten Korth, James Adjaye
Software Mentions: 3
Published: over 6 years ago

10.3390/cells9051149

Large-Scale Profiling of Signaling Pathways Reveals a Distinct Demarcation between Normal and Extended Liver Resection
Cited by: 3
Author(s): Pieter Borger, Anton Buzdin, Maksim Sorokin, Ekaterina Kachaylo, Bostjan Humar, Rolf Graf, Pierre-Alien Clavien
Software Mentions: 3
Published: over 6 years ago

10.3390/cells10030647

ACPA Status Correlates with Differential Immune Profile in Patients with Rheumatoid Arthritis
Cited by: 17
Author(s): Achilleas Floudas, Mary Canavan, Trudy McGarry, Ronan Mullan, Sunil Nagpal, Douglas J. Veale, Ursula Fearon
Software Mentions: 3
Published: over 5 years ago

10.1186/s40673-016-0042-6

Patterns of motor signs in spinocerebellar ataxia type 3 at the start of follow-up in a reference unit
Cited by: 6
Author(s): Irene Pulido-Valdeolivas, David Gómez‐Andrés, Irene Sanz-Gallego, Estrella Rausell, Javier Arpa
Software Mentions: 3
Published: over 10 years ago

10.1186/s13020-021-00436-z

Bioconversion variation of ginsenoside CK mediated by human gut microbiota from healthy volunteers and colorectal cancer patients
Cited by: 6
Author(s): Yinping Guo, Li Shao, Li Wang, Man‐Yun Chen, Wei Zhang, Weihua Huang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251565

The protein and volatile components of trail mucus in the Common Garden Snail, Cornu aspersum
Cited by: 7
Author(s): Kaylene R. Ballard, Anne Klein, R. Andrew Hayes, Tianfang Wang, Scott F. Cummins
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0006410

Sialome diversity of ticks revealed by RNAseq of single tick salivary glands
Cited by: 61
Author(s): Jan Perner, Sára Kropáčková, Petr Kopáček, José M. C. Ribeiro
Software Mentions: 3
Published: over 8 years ago

10.3390/microorganisms8070981

Comparison of Rumen Microbiota and Serum Biochemical Indices in White Cashmere Goats Fed Ensiled or Sun-Dried Mulberry Leaves
Cited by: 15
Author(s): Yaoyue Wang, Qingmiao Shen, Shu Zhong, Yulin Chen, Yuxin Yang
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms9040855

Use of an Alignment-Free Method for the Geographical Discrimination of GTPVs Based on the GPCR Sequences
Cited by: 0
Author(s): Tesfaye Rufael, Yang Liu, Melaku Sombo, Jacqueline Kasiiti Lichoti, Janchivdorj Erdenebaatar, Bazartseren Boldbaatar, Reingard Grabherr, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Angelika Loitsch, Delesa Damena, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-50227-8

Proinflammatory profile of neonatal monocytes induced by microbial ligands is downmodulated by histamine
Cited by: 4
Author(s): Anna Cláudia Calvielli Castelo Branco, Newton Lindolfo Pereira, Fábio Seiti Yamada Yoshikawa, Luanda Mara da Silva Oliveira, Franciane Mouradian Emidio Teixeira, Lucas Ferrari de Oliveira, Anna Julia Pietrobon, Marina Passos Torrealba, Jozely Francisca Mello Lima, Alberto José da Silva Duarte, Maria Notomi Sato
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0171078

Metabolite profiling of the carnivorous pitcher plants Darlingtonia and Sarracenia
Cited by: 16
Author(s): Hannu Hotti, Peddinti Gopalacharyulu, Tuulikki Seppänen‐Laakso, Heiko Rischer
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.1602

Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene
Cited by: 195
Author(s): Hans Verstraelen, Ramiro Vílchez-Vargas, Fabian Desimpel, Ruy Jáuregui, Nele Vankeirsbilck, Steven Weyers, Rita Verhelst, Petra De Sutter, Dietmar H. Pieper, Tom Van de Wiele
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pcbi.1004553

Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Cited by: 18
Author(s): Robin van der Lee, Feng Qian, Martijn A. Langereis, Rob ter Horst, Radek Szklarczyk, Mihai G. Netea, Arno C. Andeweg, Frank J. M. van Kuppeveld, Martijn A. Huynen
Software Mentions: 3
Published: about 11 years ago

10.18632/aging.101102

Molecular pathway activation features of pediatric acute myeloid leukemia (AML) and acute lymphoblast leukemia (ALL) cells
Cited by: 15
Author(s): Ivan Petrov, Maria Suntsova, Olga Mutorova, Maxim Sorokin, Andrew Garazha, Elena Tarasovna Ilnitskaya, Pavel Spirin, Sergey Larin, Olga Kovalchuk, Vladimir Prassolov, Alex Zhavoronkov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 3
Published: almost 10 years ago

10.2196/17186

Communication Behavior Changes Between Patients With Diabetes and Healthcare Providers Over 9 Years: Retrospective Cohort Study
Cited by: 16
Author(s): Arriel Benis, Refael Barkan, Tomer Sela, Nissim Harel
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-020-00895-5

H3K27ac acetylome signatures reveal the epigenomic reorganization in remodeled non-failing human hearts
Cited by: 17
Author(s): Jiayi Pei, Magdaléna Harakaľová, Thomas A. Treibel, R Thomas Lumbers, Bastiaan J. Boukens, Igor R. Efimov, Jip T. van Dinter, Arantxa González, Begoña López, Hamid el Azzouzi, Noortje van den Dungen, Christian G.M. van Dijk, Merle M. Krebber, Hester M. den Ruijter, Gérard Pasterkamp, Dirk J. Duncker, Edward E. S. Nieuwenhuis, Roel de Weger, Manon M. H. Huibers, Aryan Vink, Jason H. Moore, James Moon, Marianne C. Verhaar, Georgios Kararigas, Michal Mokrý, Folkert W. Asselbergs, Caroline Cheng
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms9040760

Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
Cited by: 10
Author(s): Tatyana V. Butina, Yu. S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Мarsel R. Kabilov, С. И. Беликов
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-49421-5

Staphylococcal enterotoxins modulate the effector CD4+ T cell response by reshaping the gene expression profile in adults with atopic dermatitis
Cited by: 11
Author(s): Raquel Leão Orfali, Fábio Seiti Yamada Yoshikawa, Luanda Mara da Silva Oliveira, Newton Lindolfo Pereira, Jozely Francisca Mello Lima, Yasmim Álefe Leuzzi Ramos, Alberto José da Silva Duarte, Maria Notomi Sato, Valéria Aoki
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-49031-1

Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering
Cited by: 10
Author(s): Takahide Mori, Haruka Takaoka, Junko Yamane, Cantas Alev, Wataru Fujibuchi
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-47757-6

The Genomic Landscape of Centromeres in Cancers
Cited by: 17
Author(s): Anjan K. Saha, Mohamad Mourad, Mark H. Kaplan, Ilana Chefetz, Sami N. Malek, Ronald J. Buckanovich, David M. Markovitz, Rafael Contreras-Galindo
Software Mentions: 3
Published: over 7 years ago

10.1007/s00784-021-03860-5

Gingival phenotype assessment methods and classifications revisited: a preclinical study
Cited by: 7
Author(s): Kai R. Fischer, Jasmin Büchel, Tiziano Testori, Giulio Rasperini, Thomas Attin, Patrick R. Schmidlin
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-45764-1

Varroa destructor parasitism has a greater effect on proteome changes than the deformed wing virus and activates TGF-β signaling pathways
Cited by: 20
Author(s): Tomáš Erban, B. Sopko, Klara Kadlikova, Pavel Talacko, Karel Harant
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.27306

NOTCH1 signaling in oral squamous cell carcinoma via a TEL2/SERPINE1 axis
Cited by: 6
Author(s): Vasiliki Salameti, Priyanka G. Bhosale, Ashley Ames-Draycott, Kalle Sipilä, Fiona M. Watt
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-42691-z

Ancestral Stress Alters Lifetime Mental Health Trajectories and Cortical Neuromorphology via Epigenetic Regulation
Cited by: 20
Author(s): Mirela Ambeskovic, Olena Mykolaivna Babenko, Yaroslav Ilnytskyy, Igor Kovalchuk, Bryan Kolb, Gerlinde A. S. Metz
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.24598

Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression <i>in vivo</i>
Cited by: 9
Author(s): Émilie Indersie, Katarzyna B. Hooks, Caroline Capdevielle, Monique Fabrè, Nathalie Dugot‐Senant, Angélique Desplat, Sébastien Lepreux, Aksam Merched, Christophe Grosset, Martin Hagedorn
Software Mentions: 3
Published: over 8 years ago

10.3390/microorganisms8010007

Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
Cited by: 20
Author(s): Korin Albert, Asha Rani, David A. Sela
Software Mentions: 3
Published: almost 7 years ago

10.1038/s42003-020-01227-2

Nrf2 contributes to the weight gain of mice during space travel
Cited by: 25
Author(s): Takafumi Suzuki, Akira Uruno, Akane Yumoto, Keiko Taguchi, Mikiko Suzuki, Nobuhiko Harada, Rie Ryoke, Eriko Naganuma, Nanae Osanai, Aya Goto, Hiroko Suda, Ryan Browne, Akihito Otsuki, Fumiki Katsuoka, Michael Zorzi, Takahiro Yamazaki, Daisuke Saigusa, S. Koshiba, Takashi Nakamura, Satoshi Fukumoto, Hironobu Ikehata, Keizo Nishikawa, Norio Suzuki, Ikuo Hirano, Ritsuko Shimizu, Tetsuya Oishi, Hozumi Motohashi, Hirona Tsubouchi, Risa Okada, Takashi Kudo, Michihiko Shimomura, Thomas W. Kensler, Hiroyasu Mizuno, Masaki Shimizu, Satoru Takahashi, Dai Shiba, Masayuki Yamamoto
Software Mentions: 3
Published: about 6 years ago

10.1002/1878-0261.12753

Identification of BLNK and BTK as mediators of rituximab‐induced programmed cell death by CRISPR screens in GCB‐subtype diffuse large B‐cell lymphoma
Cited by: 15
Author(s): Emil Aagaard Thomsen, Anne Bruun Rovsing, Mads Valdemar Anderson, Hanne Due, Jinrong Huang, Yonglun Luo, Karen Dybkær, Jacob Giehm Mikkelsen
Software Mentions: 3
Published: over 6 years ago

10.3390/nu10101492

Digestive Responses to Fortified Cow or Goat Dairy Drinks: A Randomised Controlled Trial
Cited by: 12
Author(s): Amber M. Milan, Alison J. Hodgkinson, Sarah M. Mitchell, Utpal Kumar Prodhan, Colin G. Prosser, Elizabeth Carpenter, Karl Fraser, David Cameron‐Smith
Software Mentions: 3
Published: about 8 years ago

10.1186/s40168-020-0791-6

It's the fiber, not the fat: significant effects of dietary challenge on the gut microbiome
Cited by: 70
Author(s): Kathleen E. Morrison, Eldin Jašarević, Christopher D. Howard, Tracy L. Bale
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.11574

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer
Cited by: 11
Author(s): David P. Jacobson, Kathleen Moore, Camille C. Gunderson, M. Rowland, Rita M. Austin, Tanvi P. Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.5705

Variations in the reproductive strategies of three populations of <i>Phrynocephalus helioscopus</i> in China
Cited by: 3
Author(s): Tao Liang, Zhengxin Lu, Wenfeng He, Xiao Li-rong, Lei Shi
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.9701

A prognostic long non-coding RNA-associated competing endogenous RNA network in head and neck squamous cell carcinoma
Cited by: 13
Author(s): Chengyao Zhang, Wei Cao, Jiawu Wang, Jiannan Liu, Jialiang Li, Hao Wu, Siyi Li, Chenping Zhang
Software Mentions: 3
Published: about 6 years ago

10.1016/j.csbj.2021.04.008

Simultaneous profiling of Arabidopsis thaliana and Vibrio vulnificus MO6-24/O transcriptomes by dual RNA-seq analysis
Cited by: 5
Author(s): Yongsoon Park, Jong‐Seok Park, Mi Kyung Lee, Sung‐Hee Jung, Seon‐Kyu Kim, Choong-Min Ryu
Software Mentions: 3
Published: almost 6 years ago

10.1002/prp2.386

Rifampin modulation of xeno- and endobiotic conjugating enzyme mRNA expression and associated microRNAs in human hepatocytes
Cited by: 16
Author(s): Brandon T. Gufford, Jason Robarge, Michael T. Eadon, Hongyu Gao, Hai Lin, Yunlong Liu, Zeruesenay Desta, Todd C. Skaar
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0233064

Transcriptome analysis of Catarina scallop (Argopecten ventricosus) juveniles treated with highly-diluted immunomodulatory compounds reveals activation of non-self-recognition system
Cited by: 9
Author(s): Jesús Antonio López‐Carvallo, José Manuel Mazón‐Suástegui, Miguel Ángel Hernández‐Oñate, Dariel Tovar‐Ramírez, Fernando Abasolo‐Pacheco, Rosa María Morelos‐Castro, Guadalupe Fabiola Arcos‐Ortega
Software Mentions: 3
Published: over 6 years ago

10.1093/dnares/dsy044

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1—a comparative genomics viewpoint
Cited by: 24
Author(s): Diya Sen, Karnelia Paul, Chinmay Saha, G. N. Mukherjee, Mayurakshi Nag, Samrat Ghosh, A. K. Das, A. Seal, Sucheta Tripathy
Software Mentions: 3
Published: almost 8 years ago

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