cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s12870-020-02384-6

Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat
Cited by: 13
Author(s): Beáta Strejčková, Radim Čegan, Aleš Pečinka, Zbyněk Milec, Jan Šafář
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0217431

Comparison of bacterial community structure and potential functions in hypoxic and non-hypoxic zones of the Changjiang Estuary
Cited by: 27
Author(s): Dongmei Wu, Qiu-Ping Dai, Xuezhu Liu, Yingping Fan, Jianxin Wang
Software Mentions: 3
Published: about 7 years ago

10.1186/s12870-018-1373-7

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance
Cited by: 24
Author(s): Ana Paula Zotta Mota, Bruna Vidigal, Étienne Danchin, Roberto Coiti Togawa, Soraya C. M. Leal‐Bertioli, David J. Bertioli, Ana Cláudia Guerra Araújo, Ana Cristina Miranda Brasileiro, P. M. Guimarães
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-80824-x

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism
Cited by: 14
Author(s): Lara Durán-Trío, Gabriella Fernandes-Pires, Dunja Simicic, Jocelyn Grosse, Clothilde Roux-Petronelli, Stephen J. Bruce, Pierre‐Alain Binz, Carmen Sandi, Cristina Cudalbu, Olivier Braissant
Software Mentions: 3
Published: over 5 years ago

10.3389/fbioe.2020.00047

Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium
Cited by: 14
Author(s): Thibault Godard, Daniela Zühlke, Georg Richter, Melanie M. Wall, Manfred Rohde, Katharina Riedel, Ignacio Poblete‐Castro, Rainer Krull, Rebekka Biedendieck
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2015.01238

The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots
Cited by: 45
Author(s): Nanette Christie, Peri A Tobias, Sanushka Naidoo, Carsten Külheim
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0118424

Non-Viral Generation of Marmoset Monkey iPS Cells by a Six-Factor-in-One-Vector Approach
Cited by: 38
Author(s): Katharina Debowski, Rita Warthemann, Jana Lentes, Gabriela Salinas-Riester, Ralf Dressel, Daniel Langenstroth, Jörg Gromoll, Erika Sasaki, Rüdiger Behr
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0131292

An Insight into the Sialome of the Lone Star Tick, Amblyomma americanum, with a Glimpse on Its Time Dependent Gene Expression
Cited by: 95
Author(s): Shahid Karim, José M. C. Ribeiro
Software Mentions: 3
Published: about 11 years ago

10.1038/ismej.2013.127

Bacterial profiling of White Plague Disease in a comparative coral species framework
Cited by: 115
Author(s): Cornelia Roder, Chatchanit Arif, Till Bayer, Manuel Aranda, Camille Daniels, Ahmed A. Shibl, Suchana Chavanich, Christian R. Voolstra
Software Mentions: 3
Published: about 13 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: over 10 years ago

10.3389/fphar.2018.00912

Investigating the Molecular Mechanism of Aqueous Extract of Cyclocarya paliurus on Ameliorating Diabetes by Transcriptome Profiling
Cited by: 7
Author(s): Jing Li, Mei Luo, Minghua Hu, An‐Yuan Guo, Xiangliang Yang, Qiong Zhang, Yanhong Zhu
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-018-4907-3

Novel proteome and acetylome of Bemisia tabaci Q in response to Cardinium infection
Cited by: 10
Author(s): Hongran Li, James D. Harwood, Tong‐Xian Liu, Dong Chu
Software Mentions: 3
Published: about 8 years ago

10.1186/s12891-020-03335-w

Complications of bone transport technique using the Ilizarov method in the lower extremity: a retrospective analysis of 282 consecutive cases over 10 years
Cited by: 39
Author(s): Yanshi Liu, Maimaiaili Yushan, Zhenhui Liu, Jialin Liu, Chuang Ma, Aihemaitijiang Yusufu
Software Mentions: 3
Published: about 6 years ago

10.3389/fphar.2019.01695

Ex Vivo Human Adipose Tissue Derived Mesenchymal Stromal Cells (ASC) Are a Heterogeneous Population That Demonstrate Rapid Culture-Induced Changes
Cited by: 21
Author(s): Anna Brooks, Megan Iminitoff, Eloise Williams, Tanvi Damani, Victoria Jackson-Patel, Vicky Fan, Joanna L. James, P. Rod Dunbar, Vaughan Feisst, Hilary Sheppard
Software Mentions: 3
Published: over 6 years ago

10.3389/fcimb.2019.00403

Mapping Alterations Induced by Long-Term Axenic Cultivation of Leishmania amazonensis Promastigotes With a Multiplatform Metabolomic Fingerprint Approach
Cited by: 1
Author(s): Frederico Crepaldi, Juliano Simões de Toledo, Anderson Oliveira do Carmo, Leopoldo Ferreira Marques Machado, Daniela Diniz Viana de Brito, Ângela Vieira Serufo, Ana Paula Martins Almeida, Laser Antônio Machado Oliveira, Tiago Queiroga Nery Ricotta, Douglas de Souza Moreira, Silvane Maria Fonseca Murta, Ariane Barros Diniz, Gustavo B. Menezes, Ángeles López‐Gonzálvez, Coral Barbas, Ana Paula Fernandes
Software Mentions: 3
Published: over 6 years ago

10.3389/fcimb.2021.662404

Proteomic Analysis of Copper Toxicity in Human Fungal Pathogen Cryptococcus neoformans
Cited by: 4
Author(s): Tianshu Sun, Yanjian Li, Yingxing Li, Hailong Li, Yiyi Gong, Jianhuang Wu, Ya-Ting Ning, Chen Ding, Yingchun Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fphar.2020.00544

Identification of Prognostic miRNA Signature and Lymph Node Metastasis-Related Key Genes in Cervical Cancer
Cited by: 27
Author(s): Shuoling Chen, Chang Gao, Yangyuan Wu, Zunnan Huang
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.01109

Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
Cited by: 12
Author(s): Tao Zhang, Yingli Nie, Haifa Xia, Yanbin Zhang, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2021.641289

Bioinformatics Analysis of a Prognostic miRNA Signature and Potential Key Genes in Pancreatic Cancer
Cited by: 15
Author(s): Shuoling Chen, Chang Gao, Tao Yu, Yueyang Qu, Gary Guishan Xiao, Zunnan Huang
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101871

Anesthesia and surgery induce cognitive dysfunction in elderly male mice: the role of gut microbiota
Cited by: 46
Author(s): Gaofeng Zhan, Hua Duan, Niannian Huang, Yue Wang, Shan Li, Zhiqiang Zhou, Ning Yang, Ruiwei Jiang, Bin Zhu, Ling Yang, Yu Fan, Hui Xu, Chun Yang, Ailin Luo
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2018.00368

Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer
Cited by: 11
Author(s): Leilei Xia, Han Wang, Shengyun Cai, Xiaoling Su, Jizi Shen, Meng Qi, Yu Chen, Li Li, Jiuqiong Yan, Caihong Zhang, Man Xu
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2180-8-109

Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains
Cited by: 40
Author(s): Sergio Carilla-Latorre, Javier Calvo‐Garrido, Gareth Bloomfield, Jason Skelton, Robert R. Kay, Alasdair Ivens, José Luis Martínez, Ricardo Escalante
Software Mentions: 3
Published: about 18 years ago

10.1128/mSystems.00017-20

Isolation and Characterization of the Novel Phage JD032 and Global Transcriptomic Response during JD032 Infection of Clostridioides difficile Ribotype 078
Cited by: 19
Author(s): Tinghua Li, Yan Zhang, Ke Dong, C.J. Kuo, Chong Li, Yaping Zhu, Jinhong Qin, Qingtian Li, Yung‐Fu Chang, Xiaokui Guo, Yongzhang Zhu
Software Mentions: 3
Published: about 6 years ago

10.3389/fcimb.2020.00129

Pathobionts in the Vaginal Microbiota: Individual Participant Data Meta-Analysis of Three Sequencing Studies
Cited by: 26
Author(s): Janneke van de Wijgert, Marijn C. Verwijs, A. Christina Gill, Hanneke Borgdorff, Charlotte van der Veer, Philippe Mayaud
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-76688-w

Identification of immune-related genes as prognostic factors in bladder cancer
Cited by: 12
Author(s): Jie Zhu, Han Wang, Ting Ma, Yan He, Meng‐Ru Shen, Wei Song, Jingjing Wang, Jianping Shi, Mengyao Wu, Chao Liu, Wenjie Wang, Yongzhen Huang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.607047

Genome-Wide Identification and Analysis of the Methylation of lncRNAs and Prognostic Implications in the Glioma
Cited by: 4
Author(s): Yijie He, Lidan Wang, Jing Tang, Zhijie Han
Software Mentions: 3
Published: over 5 years ago

10.3389/fcimb.2018.00160

Group A Streptococcus M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP
Cited by: 20
Author(s): Amelia T. Soderholm, Timothy C. Barnett, Othmar Korn, Tania Rivera-Hernandez, Lisa M. Seymour, Benjamin L. Schulz, Victor Nizet, Christine A. Wells, Matthew J. Sweet, Mark J. Walker
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13195-020-00641-2

Diverse proteins aggregate in mild cognitive impairment and Alzheimer’s disease brain
Cited by: 20
Author(s): Devin Kepchia, Ling Huang, Richard Dargusch, Robert A. Rissman, Maxim N. Shokhirev, Wolfgang Fischer, David Schubert
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-75438-2

Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Cited by: 30
Author(s): Josie B. Garner, Amanda J. Chamberlain, Christy Vander Jagt, Thuy Thi Thu Nguyen, Brett Mason, L. C. Marett, Brian J Leury, William J. Wales, Ben J. Hayes
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.554759

Integrated Analysis of lncRNA–Mediated ceRNA Network in Lung Adenocarcinoma
Cited by: 90
Author(s): Xianxian Wu, Zhilin Sui, Hongdian Zhang, Ying Wang, Zhentao Yu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-72828-4

Pax6 modulates intra-retinal axon guidance and fasciculation of retinal ganglion cells during retinogenesis
Cited by: 14
Author(s): Soundararajan Lalitha, Budhaditya Basu, Surya Suresh, Vadakkath Meera, Paul Ann Riya, Surendran Parvathy, Ani V. Das, Krishnankutty C. Sivakumar, Shijulal Nelson-Sathi, Jackson James
Software Mentions: 3
Published: almost 6 years ago

10.3389/fnut.2020.553674

Circulating Branched Chain Amino Acid Concentrations Are Higher in Dairy-Avoiding Females Following an Equal Volume of Sheep Milk Relative to Cow Milk: A Randomized Controlled Trial
Cited by: 9
Author(s): Amber M. Milan, Linda M. Samuelsson, Aahana Shrestha, Pankaja Sharma, Linda Day, David Cameron‐Smith
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2164-14-895

Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation
Cited by: 52
Author(s): Adam B. Olson, Heather Kent, Christopher D. Sibley, Margot E. Grinwis, Philip Mabon, Claude Ouellette, Shari Tyson, Morag Graham, Shaun Tyler, Gary Van Domselaar, Michael G. Surette, Cindi R. Corbett
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0110664

Soil Temperature Determines the Reaction of Olive Cultivars to Verticillium dahliae Pathotypes
Cited by: 29
Author(s): Rocío Calderón, Carlos Lucena, J. L. Trapero-Casas, Pablo J. Zarco‐Tejada, Juan A Navas‐Cortés
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-020-69422-z

Significant correlation between plasma proteome profile and pain intensity, sensitivity, and psychological distress in women with fibromyalgia
Cited by: 26
Author(s): Karin Wåhlén, Malin Ernberg, Eva Kosek, Kaisa Mannerkorpi, Björn Gerdle, Bijar Ghafouri
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0130198

Chronic Insulin Exposure Induces ER Stress and Lipid Body Accumulation in Mast Cells at the Expense of Their Secretory Degranulation Response
Cited by: 10
Author(s): William E. Greineisen, Kristina Maaetoft-Udsen, Mark Speck, Januaria M. Balajadia, Lori M. N. Shimoda, Carl Sung, Helen Turner
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-021-07655-6

Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines
Cited by: 9
Author(s): Virginia Mwape, Fredrick M. Mobegi, Roshan Regmi, Toby E. Newman, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0148771

Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Cited by: 41
Author(s): Venkata Suresh Bonthala, Katie Mayes, Joanna Moreton, Martin Blythe, Victoria Wright, Sean May, Festo Massawe, Sean Mayes, Jamie Twycross
Software Mentions: 3
Published: over 10 years ago

10.3389/fnmol.2017.00283

RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription Factor Fezf2 in the Mature Motor Cortex
Cited by: 6
Author(s): Alison J Clare, Hollie E. Wicky, Ruth M. Empson, Stephanie M. Hughes
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2180-11-126

Protein expression dynamics during Escherichia Coli glucose-lactose diauxie
Cited by: 19
Author(s): Ekaterina Mostovenko, André M. Deelder, Magnus Palmblad
Software Mentions: 3
Published: over 15 years ago

10.3389/fnmol.2016.00062

Effects of Long-Term Environmental Enrichment on Anxiety, Memory, Hippocampal Plasticity and Overall Brain Gene Expression in C57BL6 Mice
Cited by: 71
Author(s): Melanie Hüttenrauch, Gabriela Salinas, Oliver Wirths
Software Mentions: 3
Published: about 10 years ago

10.1186/s12866-020-01962-w

Genotyping and plant-derived glycan utilization analysis of Bifidobacterium strains from mother-infant pairs
Cited by: 2
Author(s): Zeyu Kan, Baolong Luo, Jingjing Cai, Yan Zhang, Fengwei Tian, Yuwen Ni
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2018.00749

The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics
Cited by: 13
Author(s): Alexandros Tsakogiannis, Tereza Manousaki, Jacques Lagnel, Nikolaos Papanikolaou, Nikos Papandroulakis, Constantinos C. Mylonas, Costas S. Tsigenopoulos
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-020-07093-w

Ontogeny of hepatic metabolism in mule ducks highlights different gene expression profiles between carbohydrate and lipid metabolic pathways
Cited by: 4
Author(s): William Massimino, Stéphane Davail, Aurélie Secula, Charlotte Andrieux, Marie-Dominique Bernadet, Tracy Pioche, Karine Ricaud, Karine Gontier, Mireille Morisson, Anne Collin, Stéphane Panserat, Marianne Houssier
Software Mentions: 3
Published: almost 6 years ago

10.1099/mgen.0.000104

Modification of the Streptococcus mutans transcriptome by LrgAB and environmental stressors
Cited by: 16
Author(s): Kelly C. Rice, Matthew E. Turner, O’neshia V. Carney, Tongjun Gu, Sang‐Joon Ahn
Software Mentions: 3
Published: over 9 years ago

10.1186/s12866-021-02284-1

Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin
Cited by: 3
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Anja Poehlein, Wolfgang R. Streit, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-020-3493-y

Self-analysis of repeat proteins reveals evolutionarily conserved patterns
Cited by: 4
Author(s): M. Merski, Krzysztof Młynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanisław Dunin-Horkawicz, Maria W. Górna
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202997

Identification of potential autophagy-associated lncRNA in prostate cancer
Cited by: 6
Author(s): Jun Li, Hong Du, Wenqiang Chen, Mingxing Qiu, Peng He, Zhiwei Ma
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.50765

Midkine is a dual regulator of wound epidermis development and inflammation during the initiation of limb regeneration
Cited by: 27
Author(s): Stephanie Tsai, Clara Baselga-Garriga, Douglas A. Melton
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.689801

A Prognostic Autophagy-Related Gene Pair Signature and Small-Molecule Drugs for Hepatocellular Carcinoma
Cited by: 2
Author(s): Ze-bing Song, GuoPei Zhang, Yang Yu, shaoqiang li
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.503256

Construction and Analysis of a ceRNA Network in Cardiac Fibroblast During Fibrosis Based on in vivo and in vitro Data
Cited by: 7
Author(s): Qingyuan Gao, Haifeng Zhang, Zhi-Teng Chen, Yuewei Li, Shaohua Wang, Zheng Wen, Yong Xie, Jing-Ting Mai, Jingfeng Wang, Yangxin Chen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-018-1174-z

Environmental factors shaping the diversity of bacterial communities that promote rice production
Cited by: 45
Author(s): Zhaohui Wu, Qingshu Liu, Zhenyu Li, Wanli Cheng, Jun Sun, Zhaohui Guo, Yongmei Li, Jianqun Zhou, Delong Meng, Hongbo Li, Ping Lei, Huaqun Yin
Software Mentions: 3
Published: about 8 years ago

10.1186/s12859-018-2133-2

TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing
Cited by: 1
Author(s): Michele Farris, Andrew R. Scott, Pamela A. Texter, Marta Bartlett, Patricia Coleman, David J. Masters
Software Mentions: 3
Published: over 8 years ago

10.1186/s12859-016-1075-9

A novel procedure on next generation sequencing data analysis using text mining algorithm
Cited by: 10
Author(s): Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
Software Mentions: 3
Published: over 10 years ago

10.3389/fgene.2020.00850

Genome-Wide Transcriptional Regulation of the Long Non-coding RNA Steroid Receptor RNA Activator in Human Erythroblasts
Cited by: 5
Author(s): Waritta Sawaengdee, Kairong Cui, Keji Zhao, Suradej Hongeng, Suthat Fucharoen, Patompon Wongtrakoongate
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2018.02990

CD8+XCR1neg Dendritic Cells Express High Levels of Toll-Like Receptor 5 and a Unique Complement of Endocytic Receptors
Cited by: 9
Author(s): Ben Wylie, James F. Read, Anthony Buzzai, Teagan Wagner, Niamh M. Troy, Genevieve Syn, Shane R. Stone, Bree Foley, Anthony Bosco, Mark N Cruickshank, Jason Waithman
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2105-9-37

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Cited by: 38
Author(s): Rekin’s Janky, Jacques van Helden
Software Mentions: 3
Published: over 18 years ago

10.1007/s10456-021-09777-7

SMAD6 transduces endothelial cell flow responses required for blood vessel homeostasis
Cited by: 18
Author(s): Dana L. Ruter, Ziqing Liu, Kimlynn M. Ngo, X Shaka, Allison Marvin, Danielle B Buglak, Elise Kidder, Victoria L. Bautch
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-018-1326-1

Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Cited by: 46
Author(s): Erica L Plummer, Dieter Bulach, Gerald L Murray, Susan E Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2164-14-578

RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions
Cited by: 41
Author(s): Marc J. Champigny, Wilson W L Sung, Vasile Catana, Rupa Salwan, Peter S. Summers, Susan A. Dudley, Nicholas J. Provart, Robin K. Cameron, G. Brian Golding, Elizabeth A. Weretilnyk
Software Mentions: 3
Published: about 13 years ago

10.1099/mgen.0.000154

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells
Cited by: 16
Author(s): Tonya Watkins, Hong Liu, Matthew Chung, Tracy H. Hazen, Julie C. Dunning Hotopp, Scott G. Filler, Vincent M. Bruno
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.01296

BALOs Improved Gut Microbiota Health in Postlarval Shrimp (Litopenaeus vannamei) After Being Subjected to Salinity Reduction Treatment
Cited by: 13
Author(s): Qingqing Cao, Farhana Najnine, Hongcao Han, Bing Wu, Jin Cai
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2016.00361

Tissue-Specific Expression Patterns of MicroRNA during Acute Graft-versus-Host Disease in the Rat
Cited by: 20
Author(s): Dasaradha Jalapothu, Margherita Boieri, Rachel E Crossland, Pranali Shah, Isha A. Butt, Jean Norden, Ralf Dressel, AM Dickinson, Marit Inngjerdingen
Software Mentions: 3
Published: almost 10 years ago

10.3390/microorganisms9061117

Reassessment of the Columnea latent viroid (CLVd) Taxonomic Classification
Cited by: 1
Author(s): Parichate Tangkanchanapas, Annelies Haegeman, Monica Höfte, Kris De Jonghe
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2014.00487

Aerobic methanotrophic communities at the Red Sea brine-seawater interface
Cited by: 28
Author(s): Rehab Z. Abdallah, Mustafa Adel, Amged Ouf, Ahmed A. Sayed, Mohamed A. Ghazy, Intikhab Álam, Magbubah Essack, Feras F. Lafi, Vladimir B. Bajic, Hamza A. El-Dorry, Rania Siam
Software Mentions: 3
Published: almost 12 years ago

10.3389/fimmu.2017.01634

Dynamic Changes in Host Gene Expression following In Vitro Viral Mimic Stimulation in Crocodile Cells
Cited by: 1
Author(s): Subir Sarker, Yinan Wang, Brenden Warren-Smith, Karla J. Helbig
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0200818

Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus
Cited by: 26
Author(s): Sandra Laban, Jessica S. Suwandi, Vincent van Unen, J. Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P. F. Lelieveldt, Bart O. Roep
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0210542

Endophytic bacterial communities in peels and pulp of five root vegetables
Cited by: 20
Author(s): Viia Kõiv, Krõõt Arbo, Ülo Maiväli, Veljo Kisand, Märt Roosaare, Maido Remm, Tanel Tenson
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0135494

Characterization of the Intestinal Lactobacilli Community following Galactooligosaccharides and Polydextrose Supplementation in the Neonatal Piglet
Cited by: 19
Author(s): Jennifer L. Hoeflinger, Dimitri Kashtanov, Stephen B. Cox, Scot E. Dowd, Zeina E. Jouni, Sharon M. Donovan, Michael J. Miller
Software Mentions: 3
Published: about 11 years ago

10.1186/s12859-017-1575-2

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
Cited by: 16
Author(s): Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-020-66728-w

GlioM&M: Web-based tool for studying circulating and infiltrating monocytes and macrophages in glioma
Cited by: 9
Author(s): Erik R. Abels, Sybren L. N. Maas, Eric C. Tai, David T. Ting, Marike L. D. Broekman, Xandra O. Breakefield, Joseph El Khoury
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0174514

Oxygen tension regulates the miRNA profile and bioactivity of exosomes released from extravillous trophoblast cells – Liquid biopsies for monitoring complications of pregnancy
Cited by: 89
Author(s): Grace Truong, Dominic Guanzon, Vyjayanthi Kinhal, Omar Elfeky, Andrew Lai, Sherri Longo, Zarin Nuzhat, Carlos Palma, Katherin Scholz-Romero, Ramkumar Menon, Ben Willem J. Mol, Gregory E. Rice, Carlos Salomón
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0124599

Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome
Cited by: 303
Author(s): Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0233380

Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing
Cited by: 11
Author(s): Akihiro Sakai, Mizuo Ando, Takahito Fukusumi, Shuling Ren, Chao Liu, Jesse R. Qualliotine, Sunny Haft, Sayed Sadat, Yuki Saito, Theresa Guo, Guiyin Xu, Roman Šášik, Kathleen M. Fisch, J. Silvio Gutkind, Elana J. Fertig, Alfredo A. Molinolo, Joseph A. Califano
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0109710

Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease
Cited by: 74
Author(s): HeeKuk Park, Jong Wook Shin, Sang-Gue Park, Wonyong Kim
Software Mentions: 3
Published: almost 12 years ago

10.1155/2014/857245

Intestinal Parasites Coinfection Does Not Alter Plasma Cytokines Profile Elicited in Acute Malaria in Subjects from Endemic Area of Brazil
Cited by: 13
Author(s): Juan Camilo Sánchez‐Arcila, Daiana de Souza Perce-da-Silva, Mariana Pinheiro Alves Vasconcelos, Rodrigo Nunes Rodrigues-da-Silva, Virgínia Araújo Pereira, Cesarino Junior Lima Aprígio, Cleoni Alves Mendes de Lima, Bruna de Paula Fonseca e Fonseca, Dalma Maria Banic, Josué da Costa Lima-Junior, Joseli Oliveira-Ferreira
Software Mentions: 3
Published: over 12 years ago

10.1038/s41598-020-65369-3

Measuring Cancer Hallmark Mediation of the TET1 Glioma Survival Effect with Linked Neural-Network Based Mediation Experiments
Cited by: 2
Author(s): Thomas Luechtefeld, Nole Lin, Channing J. Paller, Katherine J. Kuhns, John Laterra, Joseph Bressler
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0051136

Meta-Analysis of Gene Expression Signatures Defining the Epithelial to Mesenchymal Transition during Cancer Progression
Cited by: 140
Author(s): Christian Gröger, Markus Grubinger, Thomas Waldhör, Klemens Vierlinger, Wolfgang Mikulits
Software Mentions: 3
Published: over 13 years ago

10.1038/s41598-020-62776-4

Apoptosis characterization in mononuclear blood leukocytes of HIV patients during dengue acute disease
Cited by: 2
Author(s): Amanda Torrentes-Carvalho, Juan Camilo Sánchez‐Arcila, Tamiris Azamor, Luciana Santos Barbosa, Eugênio D. Hottz, Mariana Gandini, Fernando A. Bozza, Rivaldo Venâncio da Cunha, Luciana Wernersbach Pinto, Paulo Vieira Damasco, Elzinandes Leal de Azeredo
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0003372

An Updated Insight into the Sialotranscriptome of Triatoma infestans: Developmental Stage and Geographic Variations
Cited by: 35
Author(s): Alexandra Schwarz, Nora Medrano-Mercado, Günter A. Schaub, Cláudio J. Struchiner, M. D. Bargues, Michael Z. Levy, José M. C. Ribeiro
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0233896

Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions
Cited by: 12
Author(s): S. Antony Ceasar, Muthusamy Ramakrishnan, K. K. Vinod, G. Victor Roch, Hari D. Upadhyaya, Alison Baker, S. Ignacimuthu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0228550

Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India
Cited by: 5
Author(s): Pratibha Sanjenbam, Radhika Buddidathi, Radhika Venkatesan, P. V. Shivaprasad, Deepa Agashe
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61420-5

Eosinophil accumulation in postnatal lung is specific to the primary septation phase of development
Cited by: 17
Author(s): Lucas F. Loffredo, Mackenzie E. Coden, Brian M. Jeong, Matthew T. Walker, Kishore R. Anekalla, Ton C. Doan, Raul I. Rodriguez, M.J. Browning, Ki-Won Nam, James J. Lee, Hiam Abdala‐Valencia, Sergejs Berdnikovs
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-59988-z

A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibility
Cited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0146125

Caste-Specific and Sex-Specific Expression of Chemoreceptor Genes in a Termite
Cited by: 35
Author(s): Yuki Mitaka, Keiko Kobayashi, Alexander S. Mikheyev, Mandy M. Y. Tin, Yutaka Watanabe, Kenji Matsuura
Software Mentions: 3
Published: over 10 years ago

10.18632/aging.102736

Anesthesia and surgery induce age-dependent changes in behaviors and microbiota
Cited by: 46
Author(s): Ning Liufu, Ling Liu, Shiqian Shen, Zengliang Jiang, Yuanlin Dong, Yanyan Wang, Deborah J. Culley, Gregory Crosby, Minghui Cao, Yuan Shen, Edward R. Marcantonio, Zhongcong Xie, Yiying Zhang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1004553

Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Cited by: 18
Author(s): Robin van der Lee, Feng Qian, Martijn A. Langereis, Rob ter Horst, Radek Szklarczyk, Mihai G. Netea, Arno C. Andeweg, Frank J. M. van Kuppeveld, Martijn A. Huynen
Software Mentions: 3
Published: almost 11 years ago

10.1007/s00122-021-03781-7

Identification of eight QTL controlling multiple yield components in a German multi-parental wheat population, including Rht24, WAPO-A1, WAPO-B1 and genetic loci on chromosomes 5A and 6A
Cited by: 16
Author(s): Beatrice Corsi, Lia Obinu, Camila Martini Zanella, Saverio Cutrupi, Rob Day, Manuel Geyer, Morten Lillemo, Min Lin, Lorenzo Mazza, Lawrence Percival‐Alwyn, Melanie Stadlmeier, Volker Mohler, L. Hartl, James Cockram
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0158768

Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning
Cited by: 8
Author(s): Chunlei Yang, Lan Mi, Xianqiao Hu, Jianxin Liu, Jiakun Wang
Software Mentions: 3
Published: about 10 years ago

10.1186/s13100-019-0186-z

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
Cited by: 13
Author(s): Pavel Jedlička, Matej Lexa, I. Vanat, Roman Hobza, Eduard Kejnovský
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41379-021-00789-8

Recurrent novel HMGA2-NCOR2 fusions characterize a subset of keratin-positive giant cell-rich soft tissue tumors
Cited by: 19
Author(s): Abbas Agaimy, Michael Michal, Robert Stoehr, Fulvia Ferrazzi, Pavel Fabián, Michal Michal, Alessandro Franchi, Florian Haller, Andrew L. Folpe, Kemal Kösemehmetoğlu
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-51673-0

Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum
Cited by: 15
Author(s): Meenu Rohini Rajan, Matúš Soták, Fredrik Barrenäs, Tong Shen, Kamil Borkowski, Nicholas J. Ashton, Christina Biörserud, Tomas Lindahl, Sofia Ramström, Michael Schöll, Per Lindahl, Oliver Fiehn, John W. Newman, Rosie Perkins, Ville Wallenius, Stephan Lange, Emma Börgeson
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12943-020-01301-7

Targeting CDK7 suppresses super enhancer-linked inflammatory genes and alleviates CAR T cell-induced cytokine release syndrome
Cited by: 12
Author(s): Wei Ye, Chong Li, Huifang Bian, Wei Qian, Kaizhou Jin, Tianmin Xu, Xiaomao Guo, Lu Xia, Fengtao Su
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-50272-3

Patterns of Anatomic Injury in Critically Injured Combat Casualties: A Network Analysis
Cited by: 20
Author(s): Jud C. Janak, Edward L. Mazuchowski, Russ S Kotwal, Zsolt T. Stockinger, Jeffrey T. Howard, Frank K. Butler, Jonathan A. Sosnov, Jennifer M Gurney, Stacy Shackelford
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-50227-8

Proinflammatory profile of neonatal monocytes induced by microbial ligands is downmodulated by histamine
Cited by: 4
Author(s): Anna Cláudia Calvielli Castelo Branco, Newton Lindolfo Pereira, Fábio Seiti Yamada Yoshikawa, Luanda Mara da Silva Oliveira, Franciane Mouradian Emidio Teixeira, Lucas Ferrari de Oliveira, Anna Julia Pietrobon, Marina Passos Torrealba, Jozely Francisca Mello Lima, Alberto José da Silva Duarte, Maria Notomi Sato
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0251565

The protein and volatile components of trail mucus in the Common Garden Snail, Cornu aspersum
Cited by: 7
Author(s): Kaylene R. Ballard, Anne Klein, R. Andrew Hayes, Tianfang Wang, Scott F. Cummins
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9040760

Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
Cited by: 10
Author(s): Tatyana V. Butina, Yu. S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Мarsel R. Kabilov, С. И. Беликов
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0213220

miR-7977 inhibits the Hippo-YAP signaling pathway in bone marrow mesenchymal stromal cells
Cited by: 20
Author(s): Masahiro Yoshida, Hyogo Horiguchi, Shohei Kikuchi, Satoshi Iyama, Hiroshi Ikeda, Akinobu Goto, Yutaka Kawano, Kazuyuki Murase, Kohichi Takada, Koji Miyanishi, Junji Kato, Masayoshi Kobune
Software Mentions: 3
Published: over 7 years ago

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