cran: glmnet | Projects | Ecosyste.ms: Papers

10.1186/s12859-018-2512-8

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data
Cited by: 9
Author(s): A. M. C. Chan, Amy L. Williams, Jean‐Luc Jannink
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-15-62

Stability SCAD: a powerful approach to detect interactions in large-scale genomic study
Cited by: 1
Author(s): Jianwei Gou, Yang Zhao, Wei Yongyue, Chen Wu, Ruyang Zhang, Yongyong Qiu, Ping Zeng, Wen Tan, Dianke Yu, Tangchun Wu, Zhibin Hu, Dongxin Lin, Hongbing Shen, Feng Chen
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-018-2401-1

Data integration by multi-tuning parameter elastic net regression
Cited by: 23
Author(s): Jie Liu, Gangning Liang, Kimberly D. Siegmund, Juan Pablo Lewinger
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-15-191

Efficient design of meganucleases using a machine learning approach
Cited by: 9
Author(s): Mikhail Zaslavskiy, Claudia Bertonati, Philippe Duchâteau, Aymeric Duclert, George H. Silva
Software Mentions: 4
Published: over 10 years ago

10.1186/s12915-020-00783-7

Tropomyosin 1 genetically constrains in vitro hematopoiesis
Cited by: 8
Author(s): Christopher S. Thom, Chintan Jobaliya, Kimberly Lorenz, Jean Ann Maguire, Alyssa Gagne, Paul Gadue, Deborah L. French, Benjamin F. Voight
Software Mentions: 4
Published: over 4 years ago

10.1186/s12885-021-08478-0

Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
Cited by: 18
Author(s): Hongyu Li, Xiliu Zhang, Yi Chen, Yi He, Xun Chen, Wei Zhao, Dongsheng Yu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-015-1530-4

Expression of pre-selected TMEMs with predicted ER localization as potential classifiers of ccRCC tumors
Cited by: 77
Author(s): Tomasz Wrzesiński, Małgorzata Szeląg, Wojciech A Cieślikowski, Agnieszka Ida, Rachel Giles, Elżbieta Zodro, Joanna Szumska, Joanna Poźniak, Zbigniew Kwias, Hans A.R. Bluyssen, Joanna Wesoły
Software Mentions: 4
Published: over 9 years ago

10.1186/s12885-020-07532-7

Establishment of an immune-related gene pair model to predict colon adenocarcinoma prognosis
Cited by: 8
Author(s): Jihang Luo, Puyu Liu, Leibo Wang, Yi Huang, Yuanyan Wang, Wenjing Geng, Duo Chen, Yifeng Bai, Zichen Yang
Software Mentions: 4
Published: about 4 years ago

10.1186/s12885-021-08207-7

Five long non-coding RNAs establish a prognostic nomogram and construct a competing endogenous RNA network in the progression of non-small cell lung cancer
Cited by: 8
Author(s): Yongjun Yu, Kewei Ren
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-08796-3

Pan-cancer evaluation of gene expression and somatic alteration data for cancer prognosis prediction
Cited by: 3
Author(s): Xingyu Zheng, Christopher I. Amos, H. Robert Frost
Software Mentions: 4
Published: about 3 years ago

10.1186/s12885-021-08201-z

Predictive nomogram for postoperative pancreatic fistula following pancreaticoduodenectomy: a retrospective study
Cited by: 8
Author(s): Jian Shen, Feng Guo, Yan Sun, Jingyuan Zhao, Jin Hu, Zunxiang Ke, Yushun Zhang, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-020-07712-5

Construction of a nine DNA repair-related gene prognostic classifier to predict prognosis in patients with endometrial carcinoma
Cited by: 7
Author(s): Jinhui Liu, Pinping Jiang, Xucheng Chen, Yujie Shen, Guoliang Cui, Ziyan Ma, Shaojie Zhao, Yan Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-020-07331-0

LINC00649 underexpression is an adverse prognostic marker in acute myeloid leukemia
Cited by: 11
Author(s): Chao Guo, Ya-yue Gao, Qianqian Ju, Chunxia Zhang, Ming Gong, Zhenling Li
Software Mentions: 4
Published: about 4 years ago

10.1186/s12885-021-07911-8

Construction of the optimization prognostic model based on differentially expressed immune genes of lung adenocarcinoma
Cited by: 6
Author(s): Yuanliang Zhai, Bin Zhao, Yuzhen Wang, Lina Li, Jingjin Li, Li Xu, Linhan Chang, Qian Chen, Zhijun Liao
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-08173-0

Comprehensive analyses of competing endogenous RNA networks reveal potential biomarkers for predicting hepatocellular carcinoma recurrence
Cited by: 3
Author(s): Ping Yan, Zuotian Huang, Tong Mou, Yunhai Luo, Yanyao Liu, Baoyong Zhou, Zhen-Rui Cao, Zhongjun Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-020-07194-5

A panel of DNA methylation signature from peripheral blood may predict colorectal cancer susceptibility
Cited by: 12
Author(s): Justina Ucheojor Onwuka, Dapeng Li, Yupeng Liu, Hao Huang, Jing Xu, Ying Liu, Yuanyuan Zhang, Yong Zhao
Software Mentions: 4
Published: over 4 years ago

10.1186/s12863-017-0533-3

Resampling-based tests for Lasso in genome-wide association studies
Cited by: 12
Author(s): Jaron Arbet, Matt McGue, Snigdhansu Chatterjee, Saonli Basu
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2156-13-24

Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system
Cited by: 4
Author(s): Ross E. Curtis, Anuj Goyal, Eric P. Xing
Software Mentions: 4
Published: over 12 years ago

10.1186/s12864-016-3218-9

Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations
Cited by: 9
Author(s): Filippo Biscarini, Hermann Schwarzenbacher, Hubert Pausch, Ezequiel Luís Nicolazzi, Yuri Pirola, Stefano Biffani
Software Mentions: 4
Published: about 8 years ago

10.1186/s12879-017-2837-3

Acquisition and persistence of strain-specific methicillin-resistant Staphylococcus aureus and their determinants in community nursing homes
Cited by: 3
Author(s): Nataliya G. Batina, Christopher Crnich, Dorte Döpfer
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12920-016-0192-7

Integrative regression network for genomic association study
Cited by: 9
Author(s): Reddy Rani Vangimalla, Hyun-Hwan Jeong, Kyung-Ah Sohn
Software Mentions: 4
Published: over 8 years ago

10.1186/s12880-021-00564-w

CT-based radiomics combined with signs: a valuable tool to help radiologist discriminate COVID-19 and influenza pneumonia
Cited by: 14
Author(s): Yurong Huang, Zhenguang Zhang, Siyun Liu, Xiang Li, Yaewon Yang, Jiyao Ma, Zhipeng Li, Jialong Zhou, Yuanming Jiang, Bo He
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12880-019-0355-z

Computed tomography-based predictive nomogram for differentiating primary progressive pulmonary tuberculosis from community-acquired pneumonia in children
Cited by: 21
Author(s): Bei Wang, Min Li, He Ma, Fangfang Han, Yan Wang, Shunying Zhao, Zhimin Liu, Tao Yu, Jie Tian, Di Dong, Yun Peng
Software Mentions: 4
Published: over 5 years ago

10.1186/s12880-021-00633-0

Radiomic analysis of Gd-EOB-DTPA-enhanced MRI predicts Ki-67 expression in hepatocellular carcinoma
Cited by: 19
Author(s): Yanfen Fan, Yanxia Yu, Ximing Wang, Mengjie Hu, Chunhong Hu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12874-016-0254-8

Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application
Cited by: 119
Author(s): Monica M. Vasquez, Chengcheng Hu, Denise J. Roe, Zhao Chen, Marilyn Halonen, Stefano Guerra
Software Mentions: 4
Published: about 8 years ago

10.1186/s12874-016-0277-1

Clinical prediction in defined populations: a simulation study investigating when and how to aggregate existing models
Cited by: 21
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 4
Published: almost 8 years ago

10.1186/1753-6561-5-S9-S19

Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
Cited by: 8
Author(s): Asuman Türkmen, Shili Lin
Software Mentions: 4
Published: almost 13 years ago

10.1186/1753-6561-8-S1-S94

Does the inclusion of rare variants improve risk prediction?
Cited by: 1
Author(s): Erin Austin, Wei Pan, Xiaotong Shen
Software Mentions: 4
Published: over 10 years ago

10.1186/s12889-020-09130-5

Model of genetic and environmental factors associated with type 2 diabetes mellitus in a Chinese Han population
Cited by: 7
Author(s): Zheng Li, Chengyin Ye, Tianyu Zhao, Lei Yang
Software Mentions: 4
Published: over 4 years ago

10.1186/s12889-019-7861-3

Health as an independent predictor of the 2017 French presidential voting behaviour: a cross-sectional analysis
Cited by: 5
Author(s): Jean–David Zeitoun, Matthieu Faron, Sophie de Vaugrigneuse, Jérémie H. Lefèvre
Software Mentions: 4
Published: about 5 years ago

10.1186/s13104-020-05371-0

FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: about 4 years ago

10.1186/s41927-019-0078-3

Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: over 5 years ago

10.1186/s12938-021-00902-7

An immune-related pseudogene signature to improve prognosis prediction of endometrial carcinoma patients
Cited by: 2
Author(s): Shanshan Tang, Yiyi Zhuge
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/8047146

A Novel Schizophrenia Diagnostic Model Based on Statistically Significant Changes in Gene Methylation in Specific Brain Regions
Cited by: 3
Author(s): Donghua Zou, Yufen Qiu, Rongjie Li, Youshi Meng, Yuan Wu
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/6680066

A Prognostic Model for Brain Glioma Patients Based on 9 Signature Glycolytic Genes
Cited by: 8
Author(s): Bing-xiang Xiao, Panxing Wu, Feng Lu, Yan Xiuyou, Chao Ding
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/7264623

A Simple-to-Use Nomogram for Predicting Survival in Children with Acute Myeloid Leukemia
Cited by: 8
Author(s): Feng Jiang, Xiang Yu, Chuyan Wu, Ming Wang, Ke Wei, Jimei Wang, Guoping Zhou
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/6057948

Identification and Verification of a 17 Immune-Related Gene Pair Prognostic Signature for Colon Cancer
Cited by: 3
Author(s): Qianshi Zhang, Zhen Feng, Yongnian Zhang, Shasha Shi, Yu Zhang, Shuo Ren
Software Mentions: 4
Published: over 3 years ago

10.1042/BSR20203051

Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
Cited by: 0
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Renpeng Li, You Zhai, Yuanhao Chang, Di Wang, Ulf D. Kahlert, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: almost 4 years ago

10.1042/BSR20201261

Construction of a novel prognostic-predicting model correlated to ovarian cancer
Cited by: 3
Author(s): Wei-Chun Tang, Jie Li, Xinxia Chang, Lizhou Jia, Qi Tang, Ying Wang, Yanli Zheng, Lichao Sun, Zhenqing Feng
Software Mentions: 4
Published: over 4 years ago

10.1042/BSR20211241

Multi-omic analyses of hepatocellular carcinoma to determine immunological characteristics and key nodes in gene-expression network
Cited by: 3
Author(s): Zhihui Wang, Shuijun Zhang
Software Mentions: 4
Published: over 3 years ago

10.1111/bpa.12595

Epigenomic signature of adrenoleukodystrophy predicts compromised oligodendrocyte differentiation
Cited by: 18
Author(s): Agatha Schlüter, Juan Sandoval, Stéphane Fourcade, Ángel Díaz‐Lagares, Montserrat Ruíz, Patrizia Casaccia, Manel Esteller, Aurora Pujol
Software Mentions: 4
Published: over 6 years ago

10.1186/s13058-021-01454-3

Biomarkers of mammographic density in premenopausal women
Cited by: 2
Author(s): Mathilde His, Martín Lajous, Liliana Gómez-Flores-Ramos, Adriana Monge, Laure Dossus, Vivian Viallon, Audrey Gicquiau, Carine Biessy, Marc J. Gunter, Sabina Rinaldi
Software Mentions: 4
Published: over 3 years ago

10.1186/s12935-021-01915-x

Establishment and validation of a prognostic signature for lung adenocarcinoma based on metabolism‐related genes
Cited by: 26
Author(s): Wenwen Wang, Kidane Siele Embaye, Qing Yang, Lingzhi Qin, Chao Zhang, Liwei Liu, Xiaoqian Zhan, Fengdi Zhang, Xi Wang, Shenghui Qin
Software Mentions: 4
Published: over 3 years ago

10.1186/s40644-021-00395-6

Radiomic nomogram based on MRI to predict grade of branching type intraductal papillary mucinous neoplasms of the pancreas: a multicenter study
Cited by: 14
Author(s): Shuai Cui, Tianyu Tang, Qiuming Su, Yajie Wang, Zhenyu Shu, Wei Yang, Xiangyang Gong
Software Mentions: 4
Published: over 3 years ago

10.1002/cam4.1397

Development and validation of an individualized diagnostic signature in thyroid cancer
Cited by: 16
Author(s): Li-ou Han, Xinyu Li, Mingming Cao, Yan Cao, Lihong Zhou
Software Mentions: 4
Published: over 6 years ago

10.1002/cam4.4022

A pharmacophore‐based classification better predicts the outcomes of HER2‐negative breast cancer patients receiving the anthracycline‐ and/or taxane‐based neoadjuvant chemotherapy
Cited by: 1
Author(s): Xuan Li, Hefen Sun, Qiqi Liu, Yang Liu, Yifeng Hou, Wei Jin
Software Mentions: 4
Published: over 3 years ago

10.1002/cam4.4104

Improving the overall survival prognosis prediction accuracy: A 9‐gene signature in CRC patients
Cited by: 6
Author(s): Wenbo Zheng, Yijia Lu, Xiaochuang Feng, Chuanxin Yang, Ling Qiu, Haijun Deng, Qi Xue, Kai Sun
Software Mentions: 4
Published: over 3 years ago

10.1002/cam4.1303

Identification of a novel gene pairs signature in the prognosis of gastric cancer
Cited by: 42
Author(s): Pailan Peng, Xiangyu Zhou, Guo-Dong Yi, Pengfei Chen, Fan Wang, Weiguo Dong
Software Mentions: 4
Published: almost 7 years ago

10.1016/j.media.2020.101871

Accurate brain age prediction with lightweight deep neural networks
Cited by: 199
Author(s): Peng Han, Weikang Gong, Christian F. Beckmann, Andrea Vedaldi, Stephen M. Smith
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-019-0645-2

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
Cited by: 99
Author(s): Nina Iszatt, Stefan Janssen, Virissa Lenters, Cecilie Dahl, Hein Stigum, Rob Knight, Siddhartha Mandal, Shyamal Peddada, Antonio González, Tore Midtvedt, Merete Eggesbø
Software Mentions: 4
Published: over 5 years ago

10.1002/1878-0261.12811

High‐grade serous peritoneal cancer follows a high stromal response signature and shows worse outcome than ovarian cancer
Cited by: 1
Author(s): Francis Jacob, Rosa Lina Marchetti, André B. Kind, Kenneth J. Russell, Andreas Schoetzau, Viola Heinzelmann‐Schwarz
Software Mentions: 4
Published: about 4 years ago

10.1002/1878-0261.12158

Prognostic value of an immunohistochemical signature in patients with esophageal squamous cell carcinoma undergoing radical esophagectomy
Cited by: 20
Author(s): Meng Ji, Junhua Zhang, Yingjie Xiu, Yan Jin, Jiaqing Xiang, Yongzhan Nie, Shihua Fu, Kuaile Zhao
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12985-021-01561-9

Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis
Cited by: 4
Author(s): Yingjie Qi, Jian-An Jia, Huiming Li, Nagen Wan, Shuqin Zhang, Xiaoling Ma
Software Mentions: 4
Published: over 3 years ago

10.12688/wellcomeopenres.16330.2

Systemic inflammation is negatively associated with early post discharge growth following acute illness among severely malnourished children - a pilot study
Cited by: 3
Author(s): James M. Njunge, Gerard Bryan Gonzales, Moses Ngari, Johnstone Thitiri, Robert Bandsma, James A. Berkley
Software Mentions: 4
Published: over 3 years ago

10.1186/s12957-021-02244-z

Identification of a ferroptosis-related gene signature predictive model in colon cancer
Cited by: 17
Author(s): Ye Wang, Heng-bo Xia, Zhang-ming Chen, Lei Meng, Aiming Xu
Software Mentions: 4
Published: over 3 years ago

10.3389/pore.2021.1609782

Prognostic Signature of Osteosarcoma Based on 14 Autophagy-Related Genes
Cited by: 8
Author(s): Qi Wei, Qian Yan, Ming Lv, Delei Song, Xianbin Wang, Kangsong Tian
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.10812

Construction of an immune-related signature with prognostic value for colon cancer
Cited by: 2
Author(s): Yunxia Lv, Xinyi Wang, Yu Ren, Xiaorui Fu, Taiyuan Li, Qunguang Jiang
Software Mentions: 4
Published: over 3 years ago

10.1098/rstb.2019.0666

Neurons in primate prefrontal cortex signal valuable social information during natural viewing
Cited by: 4
Author(s): Geoffrey K. Adams, Wei Song Ong, J. M. Pearson, Karli Watson, Michael L. Platt
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1007773

Dysregulated biodynamics in metabolic attractor systems precede the emergence of amyotrophic lateral sclerosis
Cited by: 9
Author(s): Paul Curtin, Christine Austin, Austen Curtin, Chris Gennings, Claudia Figueroa‐Romero, Kristen A. Mikhail, Tatiana M. Botero, Stephen A. Goutman, Eva L. Feldman, Manish Arora
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1005627

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation
Cited by: 7
Author(s): W. T. Anderson, Danielle DeCicco, James S. Schwaber, Rajanikanth Vadigepalli
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1004790

Pathway-Based Genomics Prediction using Generalized Elastic Net
Cited by: 82
Author(s): Artem Sokolov, Daniel E. Carlin, Evan O. Paull, Robert Baertsch, Joshua M. Stuart
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1003926

Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects
Cited by: 235
Author(s): Nikolaos A. Patsopoulos, Lisa F. Barcellos, Rogier Q. Hintzen, Catherine Schaefer, Cornelia M. van Duijn, Janelle A. Noble, Towfique Raj, Pierre-Antoine Gourraud, Barbara Elaine Stranger, Jorge R. Oksenberg, Tomas Olsson, Bruce Taylor, Stephen Sawcer, David A. Hafler, Mary Carrington, Philip L. De Jager, Paul I. W. de Bakker
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pgen.1007473

RES complex is associated with intron definition and required for zebrafish early embryogenesis
Cited by: 23
Author(s): Juan Pablo Fernández, Miguel A. Moreno-Mateos, André Gohr, Liyun Miao, Shun Hang Chan, Manuel Irimia, Antonio J. Giráldez
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1004137

Accurate and Robust Genomic Prediction of Celiac Disease Using Statistical Learning
Cited by: 97
Author(s): Gad Abraham, Jason A. Tye‐Din, Oneil G. Bhalala, Adam Kowalczyk, Justin Zobel, Michael Inouye
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pgen.1004890

Altered Chromatin Occupancy of Master Regulators Underlies Evolutionary Divergence in the Transcriptional Landscape of Erythroid Differentiation
Cited by: 41
Author(s): Jacob C. Ulirsch, Jessica Lacy, Xiuli An, Narla Mohandas, Tarjei S. Mikkelsen, Vijay G. Sankaran
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pmed.1002194

Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study
Cited by: 401
Author(s): H. Raza Ali, L Chlon, Paul D.P. Pharoah, Florian Markowetz, Carlos Caldas
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0212846

Predicting one-year outcome in first episode psychosis using machine learning
Cited by: 28
Author(s): Samuel P Leighton, Rajeev Krishnadas, Kelly K. Chung, Alison Blair, Sheona Brown, Suzy Clark, Kathryn Sowerbutts, Matthias Schwannauer, Jonathan Cavanagh, Andrew Gumley
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0180221

Using machine learning and surface reconstruction to accurately differentiate different trajectories of mood and energy dysregulation in youth
Cited by: 0
Author(s): Amelia Versace, Vinod Kumar Sharma, Michele Bertocci, Genna Bebko, Satish Iyengar, Amanda Dwojak, Lisa Bonar, Susan B. Perlman, Claudiu Schirda, Michael J. Travis, Mary Kay Gill, Vaibhav A. Diwadkar, Jeffrey L. Sunshine, Scott K. Holland, Robert A. Kowatch, Boris Birmaher, David Axelson, Thomas Frazier, L. Eugene Arnold, Mary A. Fristad, Eric A. Youngstrom, Sarah M. Horwitz, Robert L. Findling, Mary L. Phillips
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0120995

A Panel of Novel Biomarkers Representing Different Disease Pathways Improves Prediction of Renal Function Decline in Type 2 Diabetes
Cited by: 54
Author(s): Michelle J Pena, Andreas Heinzel, Georg Heinze, A. Alkhalaf, Stephan J. L. Bakker, Tri Q. Nguyen, Roel Goldschmeding, Henk J. G. Bilo, Paul Perco, Bernd Mayer, Dick de Zeeuw, Hiddo J L Heerspink
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0207917

Spatial variability of biogeochemistry in shallow coastal benthic communities of Potter Cove (Antarctica) and the impact of a melting glacier
Cited by: 13
Author(s): Ralf Hoffmann, Francesca Pasotti, Susana Vázquez, Nene Lefaible, Anders Torstensson, Walter P. Mac Cormack, Frank Wenzhöfer, Ulrike Braeckman
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0214282

DNA methylation among firefighters
Cited by: 13
Author(s): Jin Zhou, Timothy G. Jenkins, Alesia M. Jung, Kyoung Sook Jeong, Jing Zhai, Elizabeth T. Jacobs, Stephanie Griffin, Devi Dearmon-Moore, Sally R. Littau, Wayne F. Peate, Nathan A. Ellis, Peter Lance, Yin Chen, Jefferey L. Burgess
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0143627

Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells
Cited by: 17
Author(s): Elena Grassi, Ettore Zapparoli, Ivan Molineris, Paolo Provero
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0223692

Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality
Cited by: 12
Author(s): Scott C. Ritchie, Johannes Kettunen, Marta Brożyńska, Artika P. Nath, Aki S. Havulinna, Satu Männistö, Markus Perola, Veikko Salomaa, Mika Ala‐Korpela, Gad Abraham, Peter Würtz, Michael Inouye
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0187542

Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome
Cited by: 10
Author(s): Anette McLeod, Ellen Færgestad Mosleth, Ida Rud, Filipe Branco dos Santos, Lars-Gustav Snipen, Kristian Hovde Liland, Lars Axelsson
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0170025

Underexpression of Specific Interferon Genes Is Associated with Poor Prognosis of Melanoma
Cited by: 12
Author(s): Aamir Zainulabadeen, Philip Yao, Habil Zare
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0182356

BARD1 serum autoantibodies for the detection of lung cancer
Cited by: 18
Author(s): Maxim Pilyugin, Pascaline Descloux, Pierre Alain André, Viktória László, Balázs Döme, Balázs Hegedűs, Sylvain Sardy, Sam M. Janes, Andrea Bianco, Geoffrey J. Laurent, Irmgard Irminger-Finger
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0226595

Development of a long non-coding RNA signature for prediction of response to neoadjuvant chemoradiotherapy in locally advanced rectal adenocarcinoma
Cited by: 15
Author(s): Lorenzo Ferrando, Gabriella Cirmena, Anna Garuti, Stefano Scabini, Federica Grillo, Luca Mastracci, Edoardo Isnaldi, C. Marrone, Roberta Gonella, Roberto Murialdo, Roberto Fiocca, Emanuele Romairone, Alberto Ballestrero, Gabriele Zoppoli
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0255675

Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems
Cited by: 3
Author(s): László Zimányi, Áron Sipos, Ferenc Sarlós, Rita Nagypál, Géza I. Groma
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0119265

Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure
Cited by: 14
Author(s): Gilles Lemesle, Florence Maury, Olivia Beseme, Lionel Ovart, Philippe Amouyel, Nicolas Lamblin, Pascal de Groote, Christophe Bauters, Florence Pinet
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0171240

Expectation propagation for large scale Bayesian inference of non-linear molecular networks from perturbation data
Cited by: 5
Author(s): Zahra Narimani, Hamid Beigy, Ashar Ahmad, Ali Masoudi‐Nejad, Holger Fröhlich
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0106131

Gene Expression Profiling Reveals Epithelial Mesenchymal Transition (EMT) Genes Can Selectively Differentiate Eribulin Sensitive Breast Cancer Cells
Cited by: 47
Author(s): Zoltán Dezső, Judith Oestreicher, Amy Weaver, Stephanie Santiago, Sergei Agoulnik, Jesse C. Chow, Yoshiya Oda, Yasuhiro Funahashi
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0198797

Clinical diagnosis of partial or complete anterior cruciate ligament tears using patients' history elements and physical examination tests
Cited by: 19
Author(s): Simon Décary, Michel Fallaha, Sylvain Belzile, Johanne Martel‐Pelletier, Jean‐Pierre Pelletier, Debbie Feldman, Marie‐Pierre Sylvestre, Pascal‐André Vendittoli, François Desmeules
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0117844

Large Unbalanced Credit Scoring Using Lasso-Logistic Regression Ensemble
Cited by: 61
Author(s): Wang Hong, Qingsong Xu, Lifeng Zhou
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0214061

Expression of socially sensitive genes: The multi-ethnic study of atherosclerosis
Cited by: 7
Author(s): Kristen Brown, Ana V. Diez‐Roux, Jennifer A. Smith, Belinda L. Needham, Bhramar Mukherjee, Erin B. Ware, Yongmei Liu, Steven W. Cole, Teresa E. Seeman, Sharon L.R. Kardia
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0233951

Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models
Cited by: 14
Author(s): Yusuke Toda, Hitomi Wakatsuki, Toru Aoike, Hiromi Kajiya‐Kanegae, Mariko Yamasaki, Takuma Yoshioka, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0198961

Modelling of the breadth of expression from promoter architectures identifies pro-housekeeping transcription factors
Cited by: 4
Author(s): Łukasz Huminiecki
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0241367

DNA methylation in blood—Potential to provide new insights into cell biology
Cited by: 3
Author(s): Donia Macartney-Coxson, Alanna M. Cameron, Jane Clapham, Miles C. Benton
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0098122

A Bayesian Method to Incorporate Hundreds of Functional Characteristics with Association Evidence to Improve Variant Prioritization
Cited by: 30
Author(s): Sarah A. Gagliano, Michael R. Barnes, Michael E. Weale, Jo Knight
Software Mentions: 4
Published: over 10 years ago

10.3390/cancers13030430

Effective Prediction of Prostate Cancer Recurrence through the IQGAP1 Network
Cited by: 4
Author(s): Yan Gu, Xiaozeng Lin, Anil Kapoor, Taosha Li, Pierre Major, Damu Tang
Software Mentions: 4
Published: almost 4 years ago

10.3390/cancers13133343

Identification of a Novel Tumor Microenvironment Prognostic Signature for Advanced-Stage Serous Ovarian Cancer
Cited by: 13
Author(s): Mingjun Zheng, Junyu Long, Anca Chelariu-Raicu, Heather Mullikin, Theresa� Vilsmaier, Aurelia Vattai, H Heidegger, Falk Batz, Simon Keckstein, Udo Jeschke, Fabian Trillsch, Sven Mahner, Till Kaltofen
Software Mentions: 4
Published: over 3 years ago

10.1038/s41419-021-03727-3

Interrogation of gender disparity uncovers androgen receptor as the transcriptional activator for oncogenic miR-125b in gastric cancer
Cited by: 14
Author(s): Ben Liu, Meng Zhou, Xiangchun Li, Xining Zhang, Qinghua Wang, Luyang Liu, Meng Yang, Da Yang, Yan Guo, Qiang Zhang, Hong Zheng, Qiong Wang, Lian Li, Xinlei Chu, Wei Wang, Haixin Li, Fengju Song, Yuan Pan, Wei Zhang, Kexin Chen
Software Mentions: 4
Published: over 3 years ago

10.1038/s41420-018-0133-7

A two-microRNA-based signature predicts first-line chemotherapy outcomes in advanced colorectal cancer patients
Cited by: 14
Author(s): Jia Liu, Zhi Zuo, Wei Wang, Qi Zhao, Miao Zhen Qiu, Hui Luo, Zhan Hong Chen, Hai Yu Mo, Feng Wang, Dong Yang, Yun Wang, Wei Xiao, Qi Wu, Huai-Qiang Ju, Zhao Lei Zeng
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13148-020-00898-2

Integrated epigenetic biomarkers in circulating cell-free DNA as a robust classifier for pancreatic cancer
Cited by: 28
Author(s): Feng Cao, Ailin Wei, Xiaofan Hu, Yijing He, Jun Zhang, Lin Xia, Kailing Tu, Jue Yuan, Ziheng Guo, Hongying Liu, Dan Xie, Ang Li
Software Mentions: 4
Published: over 4 years ago

10.1186/s13148-020-00966-7

DNA methylation signatures to predict the cervicovaginal microbiome status
Cited by: 3
Author(s): Nuno R. Nené, James E. Barrett, Allison Jones, Iona Evans, Daniel Reisel, John F. Timms, Tobias Paprotka, Andreas Leimbach, D. Franchi, Nicoletta Colombo, Line Bjørge, Michal Zikán, David Cibula, Martin Widschwendter
Software Mentions: 4
Published: about 4 years ago

10.1186/s12014-021-09318-w

Circulating proteins associated with allergy development in infants—an exploratory analysis
Cited by: 5
Author(s): Marit Stockfelt, Mun‐Gwan Hong, Bill Hesselmar, Ingegerd Adlerberth, Agnes E. Wold, Jochen M. Schwenk, Anna‐Carin Lundell, Anna Rudin
Software Mentions: 4
Published: over 3 years ago

10.1002/ctm2.206

Progress and applications of mass cytometry in sketching immune landscapes
Cited by: 21
Author(s): Ting Zhang, Antony R. Warden, Yiyang Li, Yiyang Li
Software Mentions: 4
Published: about 4 years ago

Projects: cran: glmnet

Papers Mentioning glmnet 1,607