cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.722803

Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets
Cited by: 9
Author(s): Yong Liu, Shengnan Cui, Jiayi Sun, Xin Yan, Dongran Han
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.9654

Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis
Cited by: 5
Author(s): Pengfei Liu, Weidong Tian
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2020.00663

Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.202801

The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancer
Cited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: over 5 years ago

10.18632/oncotarget.23423

Signature of survival: a 18F-FDG PET based whole-liver radiomic analysis predicts survival after 90Y-TARE for hepatocellular carcinoma
Cited by: 39
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Mario Jreige, Marie Nicod Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge, Niklaus Schaefer
Software Mentions: 5
Published: almost 9 years ago

10.18632/oncotarget.25756

Increased HSF1 expression predicts shorter disease-specific survival of prostate cancer patients following radical prostatectomy
Cited by: 17
Author(s): Johanna Björk, Ilmari Ahonen, Tuomas Mirtti, Andrew Erickson, Antti Rannikko, Anna Bützow, Stig Nordling, Johan Lundin, Mikael Lundin, Lea Sistonen, Matthias Nees, Malin Åkerfelt
Software Mentions: 5
Published: about 8 years ago

10.18632/oncotarget.26032

Comprehensive analysis identifying aberrant DNA methylation in rectal mucosa from ulcerative colitis patients with neoplasia
Cited by: 6
Author(s): Yuji Toiyama, Yoshinaga Okugawa, Satoru Kondo, Yoshiki Okita, Toshimitsu Araki, Kurando Kusunoki, Motoi Uchino, Hiroki Ikeuchi, Seiichi Hirota, Akira Mitsui, Kenji Takehana, Tsutomu Umezawa, Masato Kusunoki
Software Mentions: 5
Published: about 8 years ago

10.1186/1471-2164-15-S10-S1

AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data
Cited by: 6
Author(s): Wenbao Yu, Taesung Park
Software Mentions: 5
Published: almost 12 years ago

10.3389/fgene.2021.658323

Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: over 5 years ago

10.1038/cr.2017.121

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers
Cited by: 229
Author(s): Wenshuai Li, Xu Zhang, Xingyu Lu, Lei You, Yanqun Song, Zhongguang Luo, Jun Zhang, Ji Nie, Wanwei Zheng, Diannan Xu, Yaping Wang, Yuanqiang Dong, Shulin Yu, Jun Hong, Jianping Shi, Hankun Hao, Fen Luo, Lingyang Hua, Peng Wang, Xiaoping Qian, Fang Yuan, Lian-Huan Wei, Ming Cui, Taiping Zhang, Quan Liao, Menghua Dai, Ziwen Liu, Ge Chen, Katherine Meckel, Sarbani Adhikari, Guifang Jia, Marc Bissonnette, Xin‐Xiang Zhang, Yupei Zhao, Wei Zhang, Chuan He, Jie Liu
Software Mentions: 5
Published: about 9 years ago

10.18632/oncotarget.26578

Preoperative MRI-radiomics features improve prediction of survival in glioblastoma patients over MGMT methylation status alone
Cited by: 33
Author(s): Florent Tixier, Hyemin Um, Dalton Bermudez, Aditi Iyer, Aditya Apte, Maya Srikanth Graham, Kathryn Nevel, Joseph O. Deasy, Robert J. Young, Harini Veeraraghavan
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2021.649196

A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
Cited by: 1
Author(s): Jin Zhang, Min Chen, Yang Wen, Yin Zhang, Yunan Lu, Shengmeng Wang, Juncong Chen
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/8832739

Identification of 5-Gene Signature Improves Lung Adenocarcinoma Prognostic Stratification Based on Differential Expression Invasion Genes of Molecular Subtypes
Cited by: 19
Author(s): Zhaoxu Zheng, Weijie Deng, Jiansheng Yang
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13018-021-02425-2

Development and validation of a nomogram predicting the risk of recurrent lumbar disk herniation within 6 months after percutaneous endoscopic lumbar discectomy
Cited by: 17
Author(s): Mengxian Jia, Yadong Sheng, Guoliang Chen, Wenbin Zhang, Jiajin Lin, Shan Lu, Fayi Li, Jinwei Ying, Hui Teng
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.672674

Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
Cited by: 10
Author(s): Jianfeng Zheng, Jialu Guo, Huizhi Zhang, Benben Cao, XU Guomin, Zhifen Zhang, Jinyi Tong
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0234552

Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-019-2869-3

fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Cited by: 1
Author(s): Jiaxing Lin, Alexander B. Sibley, Ivo Shterev, Andrew B. Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Software Mentions: 5
Published: over 7 years ago

10.1186/s12885-020-07535-4

An integrated autophagy-related gene signature predicts prognosis in human endometrial Cancer
Cited by: 13
Author(s): Jun Zhang, Ziwei Wang, Rong Zhao, Lanfen An, Xing Zhou, Yingchao Zhao, Hongbo Wang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2020.554214

Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 6 years ago

10.1002/gepi.20543

SNP Selection in genome-wide and candidate gene studies via penalized logistic regression
Cited by: 180
Author(s): Kristin L. Ayers, Heather J. Cordell
Software Mentions: 5
Published: almost 16 years ago

10.3389/fonc.2021.639059

Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04340-z

Randomized boosting with multivariable base-learners for high-dimensional variable selection and prediction
Cited by: 4
Author(s): Christian Staerk, Andreas Mayr
Software Mentions: 5
Published: about 5 years ago

10.1186/s13148-018-0588-7

Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
Cited by: 18
Author(s): Cavin Ward‐Caviness, Golareh Agha, Brian H. Chen, Liliane Pfeiffer, Rory Wilson, Peter Wolf, Christian Gieger, Joel Schwartz, Pantel Vokonas, Lifang Hou, Allan C. Just, Stefania Bandinelli, Dena G. Hernandez, Andrew B. Singleton, Holger Prokisch, Thomas Meitinger, Gabi Kastenmüller, Luigi Ferrucci, Andrea A. Baccarelli, Mélanie Waldenberger, Annette Peters
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.10462

Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
Cited by: 8
Author(s): Wenqian Qi, Qian Zhang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242927

Novel methods for epistasis detection in genome-wide association studies
Cited by: 7
Author(s): Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Software Mentions: 5
Published: almost 6 years ago

10.1164/rccm.202003-0510OC

Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical Outcome
Cited by: 36
Author(s): Christopher J. Rhodes, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Sokratis Kariotis, Lars Harbaum, Mark J. Dunning, Jason M. Elinoff, Niamh Errington, A. A. Roger Thompson, James Iremonger, J. Gerry Coghlan, Paul A. Corris, Luke Howard, David G. Kiely, Colin Church, Joanna Pepke‐Zaba, Mark Toshner, Stephen J. Wort, Ankit A. Desai, Marc Humbert, William C. Nichols, Laura Southgate, David‐Alexandre Trégouët, Richard Trembath, Inga Prokopenko, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins
Software Mentions: 5
Published: about 6 years ago

10.18632/aging.203289

A innovative prognostic symbol based on neutrophil extracellular traps (NETs)-related lncRNA signature in non-small-cell lung cancer
Cited by: 13
Author(s): Fang Chen, Fen Liu, Yong Wang, Shangkun Yuan, Renfang Chen, Xiaotong Qiu, Xiaoying Qian, Xinwei Zhang, Zhehao Xiao, Qian Wang, Biqi Fu, Yong Li
Software Mentions: 5
Published: about 5 years ago

10.1097/MD.0000000000026212

The diagnostic value of a non-contrast computed tomography scan-based radiomics model for acute aortic dissection
Cited by: 3
Author(s): Zewang Zhou, Jinquan Yang, Shuntao Wang, Weihao Li, Lei Xie, Yifan Li, Changzheng Zhang
Software Mentions: 5
Published: over 5 years ago

10.1111/acel.12915

Low plasma lysophosphatidylcholines are associated with impaired mitochondrial oxidative capacity in adults in the Baltimore Longitudinal Study of Aging
Cited by: 30
Author(s): Richard D. Semba, Pingbo Zhang, Fatemeh Adelnia, Kai Sun, Marta González-Freire, Norman Salem, Nicholas A. Brennan, Richard G. Spencer, Kenneth W. Fishbein, Mohammed Khadeer, Michelle Shardell, Ruin Moaddel, Luigi Ferrucci
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2021.703033

A Novel Nomogram Based on Machine Learning-Pathomics Signature and Neutrophil to Lymphocyte Ratio for Survival Prediction of Bladder Cancer Patients
Cited by: 7
Author(s): Siteng Chen, Lingge Jiang, Encheng Zhang, Shanshan Hu, Tao Wang, Feng Gao, Ning Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-020-01699-w

Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-021-01810-9

Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patients
Cited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-12-S13-S17

Stability of building gene regulatory networks with sparse autoregressive models
Cited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: almost 15 years ago

10.3390/rs11050551

The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland Systems
Cited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pgen.1009018

The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
Cited by: 24
Author(s): Min‐Hua Zong, Marcus Alvarez, Arthur Ko, Yash V. Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Carlos A. Aguilar-Salinas, Teresa Tusié-Luna, Karen L. Mohlke, Markku Laakso, Kirsi H. Pietiläinen, Eran Halperin, Päivi Pajukanta
Software Mentions: 5
Published: about 6 years ago

10.1186/s12859-019-2778-5

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0175957

RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses
Cited by: 3
Author(s): Bajuna R. Salehe, Chris I. Jones, Giuseppe Di Fatta, Liam J. McGuffin
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.4584

Empirical evaluation of data normalization methods for molecular classification
Cited by: 12
Author(s): Hsin‐Chieh Huang, Li‐Xuan Qin
Software Mentions: 5
Published: over 8 years ago

10.1038/s42003-019-0464-9

High throughput proteomics identifies a high-accuracy 11 plasma protein biomarker signature for ovarian cancer
Cited by: 73
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, John Broberg, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 5
Published: over 7 years ago

10.1093/rheumatology/keaa497

Identification and prediction of novel classes of long-term disease trajectories for patients with juvenile dermatomyositis using growth mixture models
Cited by: 5
Author(s): Claire T. Deakin, Charalampia Papadopoulou, Liza McCann, Neil Martin, Muthana Al-Obaidi, Sandrine Compeyrot-Lacassagne, Clarissa Pilkington, Sarah Tansley, Neil McHugh, Lucy R. Wedderburn, Bianca L De Stavola
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13075-015-0682-6

Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Cited by: 42
Author(s): D. James Haddon, Vivian K. Diep, J. M. Price, Cindy Limb, Paul J. Utz, Imelda Balboni
Software Mentions: 5
Published: over 11 years ago

10.1186/s12957-021-02246-x

Human nuclear receptors (NRs) genes have prognostic significance in hepatocellular carcinoma patients
Cited by: 9
Author(s): Guangtao Sun, Kai Sun, Chao Shen
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.710767

N6-Methylandenosine-Related lncRNAs Predict Prognosis and Immunotherapy Response in Bladder Cancer
Cited by: 20
Author(s): Yuying Zhang, Baoyi Zhu, Minghui He, Yi Cai, Xiaoling Ying, Chonghe Jiang, Weidong Ji, Jing Zeng
Software Mentions: 5
Published: about 5 years ago

10.1126/sciadv.abh0534

Cell-free DNA TAPS provides multimodal information for early cancer detection
Cited by: 36
Author(s): Paulina Siejka-Zielińska, Jingfei Cheng, Felix Jackson, Yibin Liu, Zahir Soonawalla, Srikanth Reddy, Michael Silva, Luminita Puta, Misti McCain, Emma L. Culver, Noor Bekkali, Benjamin Schuster-Böckler, Pier Francesco Palamara, Derek A. Mann, Helen L. Reeves, Eleanor Barnes, Shivan Sivakumar, Chun-Xiao Song
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pcbi.1008517

Network propagation of rare variants in Alzheimer’s disease reveals tissue-specific hub genes and communities
Cited by: 1
Author(s): Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0209923

Penalized negative binomial models for modeling an overdispersed count outcome with a high-dimensional predictor space: Application predicting micronuclei frequency
Cited by: 7
Author(s): Rebecca R. Lehman, Kellie J. Archer
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0106298

Adverse Drug Reaction Prediction Using Scores Produced by Large-Scale Drug-Protein Target Docking on High-Performance Computing Machines
Cited by: 56
Author(s): Montiago X. LaBute, Xiaohua Zhang, Jason Lenderman, Brian J. Bennion, Sergio E. Wong, Felice C. Lightstone
Software Mentions: 5
Published: about 12 years ago

10.7717/peerj.9658

A prognostic gene model of immune cell infiltration in diffuse large B-cell lymphoma
Cited by: 9
Author(s): Hao Zhou, Chang Zheng, Desheng Huang
Software Mentions: 5
Published: about 6 years ago

10.3390/ani10071182

Predicting Ewe Body Condition Score Using Lifetime Liveweight and Liveweight Change, and Previous Body Condition Score Record
Cited by: 5
Author(s): Jimmy Semakula, René A. Corner-Thomas, S. T. Morris, Hugh T. Blair, P. R. Kenyon
Software Mentions: 5
Published: about 6 years ago

10.1038/s41597-019-0337-6

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction
Cited by: 16
Author(s): Laura Bravo-Merodio, Animesh Acharjee, Jon Hazeldine, Conor Bentley, Mark Foster, Georgios V. Gkoutos, Janet M. Lord
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.8312

Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2020.599888

Non-Invasive Radiomics Approach Predict Invasiveness of Adamantinomatous Craniopharyngioma Before Surgery
Cited by: 11
Author(s): Guofo Ma, Jie Kang, Ning Qiao, Bochao Zhang, Xuzhu Chen, Guilin Li, Zhixian Gao, Songbai Gui
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6046

In silico engineering of<i>Pseudomonas</i>metabolism reveals new biomarkers for increased biosurfactant production
Cited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: almost 8 years ago

10.34133/2019/7937156

instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: almost 8 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: almost 6 years ago

10.1002/cam4.4109

A prognostic nomogram based on competing endogenous RNA network for clear‐cell renal cell carcinoma
Cited by: 2
Author(s): Yun Peng, Sanlan Wu, Zihan Xu, Dingkun Hou, Nan Li, Zheyu Zhang, Lili Wang, Haitao Wang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0167488

Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial
Cited by: 46
Author(s): Leigh M. Howard, Kristen L. Hoek, Johannes Goll, Parimal Samir, Allison C. Galassie, Tara M. Allos, Xinnan Niu, Laura E. Gordy, C. Buddy Creech, Nripesh Prasad, Travis L. Jensen, Heather Hill, Shawn Levy, Sebastian Joyce, Andrew J. Link, Kathryn M. Edwards
Software Mentions: 5
Published: over 9 years ago

10.3389/fonc.2019.01050

Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: almost 7 years ago

10.1038/srep19244

Evaluation of the 2b-RAD method for genomic selection in scallop breeding
Cited by: 57
Author(s): Jun Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao
Software Mentions: 5
Published: over 10 years ago

10.3389/fonc.2018.00360

Novel Nomogram for Preoperative Prediction of Early Recurrence in Intrahepatic Cholangiocarcinoma
Cited by: 79
Author(s): Wenjie Liang, Lei Xu, Pengfei Yang, Lele Zhang, Dalong Wan, Qiang Huang, Tianye Niu, Feng Chen
Software Mentions: 5
Published: about 8 years ago

10.1080/21655979.2021.1878763

Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma
Cited by: 9
Author(s): Jie Cao, Lili Wu, Lei Xin, Ke–Qing Shi, Liang Shi, Yifen Shi
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-018-2149-7

Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 8 years ago

10.1038/srep43541

Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments
Cited by: 9
Author(s): Lit‐Hsin Loo, Nicola Bougen-Zhukov, Wei-Ling Cecilia Tan
Software Mentions: 5
Published: over 9 years ago

10.1186/s12885-021-08645-3

Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
Cited by: 3
Author(s): Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng‐Hsiang Lo, Juxiang Yang, Chun‐Shu Lin, Hsing‐Lung Chao, Weimin Huang
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2020.00618

Predicting Progression-Free Survival Using MRI-Based Radiomics for Patients With Nonmetastatic Nasopharyngeal Carcinoma
Cited by: 32
Author(s): Hesong Shen, Yu Wang, Daihong Liu, Rongfei Lv, Yuanying Huang, Chao Peng, Shixi Jiang, Ying Wang, Yongpeng He, Lan Xiao, Hong Huang, Jianqing Sun, Jiuquan Zhang
Software Mentions: 5
Published: over 6 years ago

10.1186/s12885-019-6462-y

Systematical identifications of prognostic meaningful lung adenocarcinoma subtypes and the underlying mutational and expressional characters
Cited by: 6
Author(s): Zhenyang Lv, Ting Lei
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.202282

A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling
Cited by: 11
Author(s): Xiaoyu Guo, Guanhua Zhang, Zhenning Wang, Hao Duan, Tian Xie, Lingming Liang, Rui Cui, Hongrong Hu, Yi Wu, Jiajun Dong, Zhenqiang He, Yonggao Mou
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.580809

The Growth Trend Predictions in Pulmonary Ground Glass Nodules Based on Radiomic CT Features
Cited by: 8
Author(s): Chen Gao, Jing Yan, Yifan Luo, Linyu Wu, Peipei Pang, Ping Xiang, Maosheng Xu
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.554779

A Weighted Gene Co-Expression Network Analysis–Derived Prognostic Model for Predicting Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 3
Author(s): Qingchuan Chen, Yongjun Tan, Chao Zhang, Zhe Zhang, Siwei Pan, Wei An, Hui Xu
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.691372

Prognostic Signature of Hepatocellular Carcinoma and Analysis of Immune Infiltration Based on m6A-Related lncRNAs
Cited by: 6
Author(s): Ting Guo, Kun He, Yifei Wang, Jingjing Sun, Yong Chen, Zelong Yang
Software Mentions: 5
Published: about 5 years ago

10.1186/s40644-020-00297-z

A CT-based radiomics nomogram for differentiation of focal nodular hyperplasia from hepatocellular carcinoma in the non-cirrhotic liver
Cited by: 41
Author(s): Pei Nie, Guangli Yang, Jian Guo, Jingjing Chen, Xiaoli Li, Qianqian Ji, Jie Wu, Jingjing Cui, Wenjian Xu
Software Mentions: 5
Published: over 6 years ago

10.1186/s12935-019-1002-z

Two predictive precision medicine tools for hepatocellular carcinoma
Cited by: 11
Author(s): Zhiqiao Zhang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Qingbo Liu, Peng Wang, Jianqiang Ding
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13073-017-0493-2

Predicting cancer type from tumour DNA signatures
Cited by: 36
Author(s): Kee Pang Soh, Ewa Szczurek, Thomas Sakoparnig, Niko Beerenwinkel
Software Mentions: 5
Published: almost 9 years ago

10.3390/bioengineering8060085

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.620945

Individualized Prediction of Colorectal Cancer Metastasis Using a Radiogenomics Approach
Cited by: 2
Author(s): Qin Liu, Jie Li, Lin Xu, Jiasi Wang, Zong Yuan Zeng, Jiangping Fu, Xuan Huang, Yanpeng Chu, Jing Wang, Hongyu Zhang, Fanxin Zeng
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.102399

DNA methylation profile is a quantitative measure of biological aging in children
Cited by: 23
Author(s): Xiaohui Wu, Weidan Chen, Fangqin Lin, Qingsheng Huang, Jiayong Zhong, Huan Gao, Yanyan Song, Huiying Liang
Software Mentions: 5
Published: almost 7 years ago

10.1155/2019/5980567

A Genomic-Clinicopathologic Nomogram Predicts Survival for Patients with Laryngeal Squamous Cell Carcinoma
Cited by: 9
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2020.00909

Preoperative CT Radiomics Predicting the SSIGN Risk Groups in Patients With Clear Cell Renal Cell Carcinoma: Development and Multicenter Validation
Cited by: 3
Author(s): Yi Jiang, Wuchao Li, Chencui Huang, Chong Tian, Qi Chen, Xian‐Chun Zeng, Yin Cao, Yi Chen, Yintong Yang, Heng Liu, Yonghua Bo, Chenggong Luo, Yiming Li, Tijiang Zhang, Rongping Wang
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-017-15137-7

Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: almost 9 years ago

10.1186/s10020-021-00343-x

Long non-coding RNA profile study identifies a metabolism-related signature for colorectal cancer
Cited by: 19
Author(s): Yongqu Lu, Wendong Wang, Zhenzhen Liu, Junren Ma, Xin Zhou, Wei Fu
Software Mentions: 5
Published: about 5 years ago

10.1186/s12874-016-0261-9

A comparative study: classification vs. user-based collaborative filtering for clinical prediction
Cited by: 14
Author(s): Hao Fang, Rachael Hageman Blair
Software Mentions: 5
Published: almost 10 years ago

10.1016/j.ebiom.2020.102899

Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy
Cited by: 15
Author(s): Sofia Christakoudi, Manohursingh Runglall, Paula Mobillo, Irene Rebollo‐Mesa, Tjir Li Tsui, Estefanía Nova-Lamperti, Catharine Taube, S. Norris, Yogesh Kamra, Rachel Hilton, Titus Augustine, Sunil Bhandari, Richard J. Baker, David Berglund, Sue Carr, David Game, Siân Griffin, Philip A. Kalra, Robert Lewis, Patrick B. Mark, Stephen D. Marks, Iain MacPhee, William McKane, Markus Mohaupt, Estela Paz‐Artal, Sui Phin Kon, Daniel Serón, Manish D. Sinha, Beatriz Tucker, Ondřej Viklický, Daniel Ståhl, Robert I. Lechler, Graham Lord, Maria P. Hernandez-Fuentes
Software Mentions: 5
Published: about 6 years ago

10.1186/s12911-020-01271-2

Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0246691

Predicting major bleeding among hospitalized patients using oral anticoagulants for atrial fibrillation after discharge
Cited by: 6
Author(s): Jakub Qazi, Mireille E. Schnitzer, Robert Côté, Marie-Josée Martel, Marc Dorais, Sylvie Perreault
Software Mentions: 5
Published: over 5 years ago

10.3389/fmolb.2020.581354

A Prognostic Model of 15 Immune-Related Gene Pairs Associated With Tumor Mutation Burden for Hepatocellular Carcinoma
Cited by: 28
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0182356

BARD1 serum autoantibodies for the detection of lung cancer
Cited by: 18
Author(s): Maxim Pilyugin, Pascaline Descloux, Pierre Alain André, Viktória László, Balázs Döme, Balázs Hegedűs, Sylvain Sardy, Sam M. Janes, Andrea Bianco, Geoffrey J. Laurent, Irmgard Irminger-Finger
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0226595

Development of a long non-coding RNA signature for prediction of response to neoadjuvant chemoradiotherapy in locally advanced rectal adenocarcinoma
Cited by: 15
Author(s): Lorenzo Ferrando, Gabriella Cirmena, Anna Garuti, Stefano Scabini, Federica Grillo, Luca Mastracci, Edoardo Isnaldi, C. Marrone, Roberta Gonella, Roberto Murialdo, Roberto Fiocca, Emanuele Romairone, Alberto Ballestrero, Gabriele Zoppoli
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0255675

Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems
Cited by: 3
Author(s): László Zimányi, Áron Sipos, Ferenc Sarlós, Rita Nagypál, Géza I. Groma
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0119265

Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure
Cited by: 14
Author(s): Gilles Lemesle, Florence Maury, Olivia Beseme, Lionel Ovart, Philippe Amouyel, Nicolas Lamblin, Pascal de Groote, Christophe Bauters, Florence Pinet
Software Mentions: 4
Published: over 11 years ago

10.3389/pore.2021.1609782

Prognostic Signature of Osteosarcoma Based on 14 Autophagy-Related Genes
Cited by: 8
Author(s): Qi Wei, Qian Yan, Ming Lv, Delei Song, Xianbin Wang, Kangsong Tian
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0171240

Expectation propagation for large scale Bayesian inference of non-linear molecular networks from perturbation data
Cited by: 5
Author(s): Zahra Narimani, Hamid Beigy, Ashar Ahmad, Ali Masoudi‐Nejad, Holger Fröhlich
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-018-2401-1

Data integration by multi-tuning parameter elastic net regression
Cited by: 23
Author(s): Jie Liu, Gangning Liang, Kimberly D. Siegmund, Juan Pablo Lewinger
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12957-021-02244-z

Identification of a ferroptosis-related gene signature predictive model in colon cancer
Cited by: 17
Author(s): Ye Wang, Heng-bo Xia, Zhang-ming Chen, Lei Meng, Aiming Xu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0106131

Gene Expression Profiling Reveals Epithelial Mesenchymal Transition (EMT) Genes Can Selectively Differentiate Eribulin Sensitive Breast Cancer Cells
Cited by: 47
Author(s): Zoltán Dezső, Judith Oestreicher, Amy Weaver, Stephanie Santiago, Sergei Agoulnik, Jesse C. Chow, Yoshiya Oda, Yasuhiro Funahashi
Software Mentions: 4
Published: about 12 years ago

10.12688/wellcomeopenres.16330.2

Systemic inflammation is negatively associated with early post discharge growth following acute illness among severely malnourished children - a pilot study
Cited by: 3
Author(s): James M. Njunge, Gerard Bryan Gonzales, Moses Ngari, Johnstone Thitiri, Robert Bandsma, James A. Berkley
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-15-191

Efficient design of meganucleases using a machine learning approach
Cited by: 9
Author(s): Mikhail Zaslavskiy, Claudia Bertonati, Philippe Duchâteau, Aymeric Duclert, George H. Silva
Software Mentions: 4
Published: over 12 years ago

10.18632/aging.102556

Robust immunoscore model to predict the response to anti-PD1 therapy in melanoma
Cited by: 14
Author(s): Run‐Cong Nie, Shu Qiang Yuan, Yun Wang, Yan Yu Cai, Shi Chen, Shu Man Li, Jie Zhou, Guo Ming Chen, Tian Qi Luo, Zhi Wei Zhou, Yuan Fang Li
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12985-021-01561-9

Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis
Cited by: 4
Author(s): Yingjie Qi, Jian-An Jia, Huiming Li, Nagen Wan, Shuqin Zhang, Xiaoling Ma
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2021.0591

A Pilot Study Using Frequent Inpatient Assessments of Suicidal Thinking to Predict Short-Term Postdischarge Suicidal Behavior
Cited by: 36
Author(s): Shirley B. Wang, Daniel D L Coppersmith, Evan M. Kleiman, Kate H. Bentley, Alexander J. Millner, Rebecca Fortgang, Patrick Mair, Walter Dempsey, Jeff C. Huffman, Matthew K. Nock
Software Mentions: 4
Published: over 5 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607