cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fgene.2020.00663

Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: over 4 years ago

10.3390/cancers13133110

A Prediction Model for Severe Complications after Elective Colorectal Cancer Surgery in Patients of 70 Years and Older
Cited by: 7
Author(s): Esteban T.D. Souwer, E. Bastiaannet, Ewout W. Steyerberg, Jan Willem T. Dekker, W. H. Steup, Marije M. Hamaker, D J A Sonneveld, Thijs A. Burghgraef, Frederiek van den Bos, Johanneke E.A. Portielje
Software Mentions: 5
Published: over 3 years ago

10.1186/s12911-020-01271-2

Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: about 4 years ago

10.1186/s13075-015-0682-6

Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Cited by: 42
Author(s): D. James Haddon, Vivian K. Diep, J. M. Price, Cindy Limb, Paul J. Utz, Imelda Balboni
Software Mentions: 5
Published: over 9 years ago

10.1186/s12911-020-1115-2

A prognostic index based on a fourteen long non-coding RNA signature to predict the recurrence-free survival for muscle-invasive bladder cancer patients
Cited by: 3
Author(s): Xiaolong Zhang, Meng Zhang, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.700607

Comprehensive Analysis of a Nine-Gene Signature Related to Tumor Microenvironment in Lung Adenocarcinoma
Cited by: 23
Author(s): Haihui Zhong, Jie Wang, Yaru Zhu, Yefeng Shen
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2021.639059

Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.703033

A Novel Nomogram Based on Machine Learning-Pathomics Signature and Neutrophil to Lymphocyte Ratio for Survival Prediction of Bladder Cancer Patients
Cited by: 7
Author(s): Siteng Chen, Lingge Jiang, Encheng Zhang, Shanshan Hu, Tao Wang, Feng Gao, Ning Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0242927

Novel methods for epistasis detection in genome-wide association studies
Cited by: 7
Author(s): Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Software Mentions: 5
Published: almost 4 years ago

10.7150/ijms.49449

Identification and Validation of Six Autophagy-related Long Non-coding RNAs as Prognostic Signature in Colorectal Cancer
Cited by: 19
Author(s): Lin Cheng, Tong Han, Zheyu Zhang, Pan Yi, Chunhu Zhang, Sifang Zhang, Weijun Peng
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0212108

Drug sensitivity prediction with high-dimensional mixture regression
Cited by: 17
Author(s): Qianyun Li, Runmin Shi, Faming Liang
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms21082994

Identification of Key Genes Related to Lung Squamous Cell Carcinoma Using Bioinformatics Analysis
Cited by: 39
Author(s): Miaomiao Gao, Jie Zhu, Zhuo Huang, Zhengwei Xie
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms21239169

Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile
Cited by: 28
Author(s): Mingjun Zheng, Heather Mullikin, Anna Hester, Bastian Czogalla, H Heidegger, Theresa� Vilsmaier, Aurelia Vattai, Anca Chelariu-Raicu, Udo Jeschke, Fabian Trillsch, Sven Mahner, Till Kaltofen
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0167488

Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial
Cited by: 46
Author(s): Leigh M. Howard, Kristen L. Hoek, Johannes Goll, Parimal Samir, Allison C. Galassie, Tara M. Allos, Xinnan Niu, Laura E. Gordy, C. Buddy Creech, Nripesh Prasad, Travis L. Jensen, Heather Hill, Shawn Levy, Sebastian Joyce, Andrew J. Link, Kathryn M. Edwards
Software Mentions: 5
Published: almost 8 years ago

10.3390/jcm9041205

The Integration of qSOFA with Clinical Variables and Serum Biomarkers Improves the Prognostic Value of qSOFA Alone in Patients with Suspected or Confirmed Sepsis at ED Admission
Cited by: 14
Author(s): Filippo Mearelli, Giulia Barbati, Chiara Casarsa, Carlo Giansante, Andrea Breglia, Andrea Spica, Cristina Moras, Gaia Olivieri, Alessandro Agostino Occhipinti, Margherita De Nardo, Francesca Spagnol, Nicola Fiotti, Filippo Giorgio Di Girolamo, Maurizio Ruscio, Luigi Mario Castello, Efrem Colonetti, Rossella Marino, Claudio Ronco, Michela Zanetti, Enrico Lupia, María Lorenza Muiesan, Salvatore Di Somma, Gian Carlo Avanzi, Gianni Biolo
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2164-15-S10-S1

AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data
Cited by: 6
Author(s): Wenbao Yu, Taesung Park
Software Mentions: 5
Published: almost 10 years ago

10.3390/jcm10112524

Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/5041346

IgG Glycosylation Profile and the Glycan Score Are Associated with Type 2 Diabetes in Independent Chinese Populations: A Case-Control Study
Cited by: 12
Author(s): Zhiyuan Wu, Haibin Li, Di Liu, Lixin Tao, Jie Zhang, Baolu Liang, Xiangtong Liu, Xiaonan Wang, Xia Li, Youxin Wang, Wei Wang, Xiuhua Guo
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-016-3460-1

Enumerateblood – an R package to estimate the cellular composition of whole blood from Affymetrix Gene ST gene expression profiles
Cited by: 8
Author(s): Casey P. Shannon, Robert Balshaw, Virginia Chen, Zsuzsanna Hollander, Mustafa Toma, Bruce M. McManus, J. Mark FitzGerald, Don D. Sin, Raymond T. Ng, Scott J. Tebbutt
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12872-021-01961-3

Distinguishing cardiac myxomas from cardiac thrombi by a radiomics signature based on cardiovascular contrast-enhanced computed tomography images
Cited by: 3
Author(s): Wen-Lei Qian, Jiang Yu, Xi Liu, Yingkun Guo, Yuan Li, Xin Tang, Zhigang Yang
Software Mentions: 5
Published: over 3 years ago

10.1186/s12872-021-02206-z

Exploring the diagnostic effectiveness for myocardial ischaemia based on CCTA myocardial texture features
Cited by: 3
Author(s): Hengyu Zhao, Yuan Lv, Zhishang Chen, Yuting Liao, Jiangzhou Lin
Software Mentions: 5
Published: about 3 years ago

10.1186/s12885-020-07088-6

Overexpression of HOXA10 is associated with unfavorable prognosis of acute myeloid leukemia
Cited by: 17
Author(s): Chao Guo, Qianqian Ju, Chunxia Zhang, Ming Gong, Zhenling Li, Ya-yue Gao
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.649196

A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
Cited by: 1
Author(s): Jin Zhang, Min Chen, Yang Wen, Yin Zhang, Yunan Lu, Shengmeng Wang, Juncong Chen
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-021-04340-z

Randomized boosting with multivariable base-learners for high-dimensional variable selection and prediction
Cited by: 4
Author(s): Christian Staerk, Andreas Mayr
Software Mentions: 5
Published: about 3 years ago

10.18632/aging.202281

Integrated bioinformatic analysis of RNA binding proteins in hepatocellular carcinoma
Cited by: 16
Author(s): Ling Wang, Zhen Zhang, Yuan Li, Yanyan Wan, Baocai Xing
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-019-2869-3

fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Cited by: 1
Author(s): Jiaxing Lin, Alexander B. Sibley, Ivo Shterev, Andrew B. Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-019-6462-y

Systematical identifications of prognostic meaningful lung adenocarcinoma subtypes and the underlying mutational and expressional characters
Cited by: 6
Author(s): Zhenyang Lv, Ting Lei
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.710767

N6-Methylandenosine-Related lncRNAs Predict Prognosis and Immunotherapy Response in Bladder Cancer
Cited by: 20
Author(s): Yuying Zhang, Baoyi Zhu, Minghui He, Yi Cai, Xiaoling Ying, Chonghe Jiang, Weidong Ji, Jing Zeng
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.202896

Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma
Cited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0209923

Penalized negative binomial models for modeling an overdispersed count outcome with a high-dimensional predictor space: Application predicting micronuclei frequency
Cited by: 7
Author(s): Rebecca R. Lehman, Kellie J. Archer
Software Mentions: 5
Published: almost 6 years ago

10.18632/oncotarget.15718

The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
Cited by: 24
Author(s): Caleb K. Stein, Charlotte Pawlyn, Shweta S. Chavan, Leo Rasche, Niels Weinhold, Adam Corken, Amy Buros, Pieter Sonneveld, Graham Jackson, Ola Landgren, Tariq I. Mughal, Jie He, Bart Barlogie, P. Leif Bergsagel, Faith E. Davies, Brian A. Walker, Gareth J. Morgan
Software Mentions: 5
Published: over 7 years ago

10.1155/2021/5523749

Landscape of Immune Microenvironment in Epithelial Ovarian Cancer and Establishing Risk Model by Machine Learning
Cited by: 4
Author(s): Shiyi Liu, Ronghui Zhu, Zitao Wang, Wei Tan, Li Zhang, Yanqing Wang, Fangfang Dai, Mengqin Yuan, Y. Zheng, Dongyong Yang, Feiyan Wang, Xian Shu, Jian‐Qing He, Yu-Wei Zhang, Mali Wu, Zhanfeng Deng, Min Hu, Yanxiang Cheng, Yeqiang Liu
Software Mentions: 5
Published: about 3 years ago

10.1186/s12885-020-07535-4

An integrated autophagy-related gene signature predicts prognosis in human endometrial Cancer
Cited by: 13
Author(s): Jun Zhang, Ziwei Wang, Rong Zhao, Lanfen An, Xing Zhou, Yingchao Zhao, Hongbo Wang
Software Mentions: 5
Published: about 4 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0106298

Adverse Drug Reaction Prediction Using Scores Produced by Large-Scale Drug-Protein Target Docking on High-Performance Computing Machines
Cited by: 56
Author(s): Montiago X. LaBute, Xiaohua Zhang, Jason Lenderman, Brian J. Bennion, Sergio E. Wong, Felice C. Lightstone
Software Mentions: 5
Published: about 10 years ago

10.1093/sleep/zsy186

Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: about 6 years ago

10.1155/2021/6641421

Prognostic Models for Nonmetastatic Triple-Negative Breast Cancer Based on the Pretreatment Serum Tumor Markers with Machine Learning
Cited by: 0
Author(s): Huihui Chen, Shijie Wu, Jun Hu, Kun Zhang, Kaimin Hu, Yingfeng Lu, Jiapan He, Tao Pan, Yiding Chen
Software Mentions: 5
Published: over 3 years ago

10.1186/s12885-021-08645-3

Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
Cited by: 3
Author(s): Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng‐Hsiang Lo, Juxiang Yang, Chun‐Shu Lin, Hsing‐Lung Chao, Weimin Huang
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.203289

A innovative prognostic symbol based on neutrophil extracellular traps (NETs)-related lncRNA signature in non-small-cell lung cancer
Cited by: 13
Author(s): Fang Chen, Fen Liu, Yong Wang, Shangkun Yuan, Renfang Chen, Xiaotong Qiu, Xiaoying Qian, Xinwei Zhang, Zhehao Xiao, Qian Wang, Biqi Fu, Yong Li
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago

10.18632/aging.202282

A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling
Cited by: 11
Author(s): Xiaoyu Guo, Guanhua Zhang, Zhenning Wang, Hao Duan, Tian Xie, Lingming Liang, Rui Cui, Hongrong Hu, Yi Wu, Jiajun Dong, Zhenqiang He, Yonggao Mou
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2019.01050

Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-2749-x

Efficient proximal gradient algorithm for inference of differential gene networks
Cited by: 3
Author(s): Chen Wang, Feng Gao, Georgios B. Giannakis, Gennaro D’Urso, Xiaodong Cai
Software Mentions: 5
Published: over 5 years ago

10.3390/e22090965

Consistent Estimation of Generalized Linear Models with High Dimensional Predictors via Stepwise Regression
Cited by: 4
Author(s): Alex Pijyan, Qi Zheng, Hyokyoung Grace Hong, Yang Li
Software Mentions: 5
Published: about 4 years ago

10.1007/s00330-019-06513-0

Optimal timing for prediction of pathologic complete response to neoadjuvant chemoradiotherapy with diffusion-weighted MRI in patients with esophageal cancer
Cited by: 24
Author(s): Alicia S Borggreve, S.E. Heethuis, M. Boekhoff, Lucas Goense, Peter S.N. van Rossum, Lodewijk A.A. Brosens, Astrid L.H.M.W. van Lier, Richard van Hillegersberg, J J W Lagendijk, Stella Mook, Jelle P. Ruurda, Gert J. Meijer
Software Mentions: 5
Published: almost 5 years ago

10.1002/2211-5463.13134

Identification of hub lncRNAs in head and neck cancer based on weighted gene co‐expression network analysis and experiments
Cited by: 13
Author(s): Longquan Shao
Software Mentions: 5
Published: over 3 years ago

10.3389/fnagi.2016.00176

Statistical Approaches for the Study of Cognitive and Brain Aging
Cited by: 11
Author(s): Huaihou Chen, Bingxin Zhao, Guanqun Cao, Eric C. Proges, Andrew O’Shea, Adam J. Woods, Ronald A. Cohen
Software Mentions: 5
Published: over 8 years ago

10.1016/j.ebiom.2020.102899

Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy
Cited by: 15
Author(s): Sofia Christakoudi, Manohursingh Runglall, Paula Mobillo, Irene Rebollo‐Mesa, Tjir Li Tsui, Estefanía Nova-Lamperti, Catharine Taube, S. Norris, Yogesh Kamra, Rachel Hilton, Titus Augustine, Sunil Bhandari, Richard J. Baker, David Berglund, Sue Carr, David Game, Siân Griffin, Philip A. Kalra, Robert Lewis, Patrick B. Mark, Stephen D. Marks, Iain MacPhee, William McKane, Markus Mohaupt, Estela Paz‐Artal, Sui Phin Kon, Daniel Serón, Manish D. Sinha, Beatriz Tucker, Ondřej Viklický, Daniel Ståhl, Robert I. Lechler, Graham Lord, Maria P. Hernandez-Fuentes
Software Mentions: 5
Published: over 4 years ago

10.1155/2019/5980567

A Genomic-Clinicopathologic Nomogram Predicts Survival for Patients with Laryngeal Squamous Cell Carcinoma
Cited by: 9
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-12-S13-S17

Stability of building gene regulatory networks with sparse autoregressive models
Cited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: almost 13 years ago

10.3390/cancers13174317

Comprehensively Exploring the Mutational Landscape and Patterns of Genomic Evolution in Hypermutated Cancers
Cited by: 2
Author(s): Peng-Chan Lin, Yu-Min Yeh, Hui‐Ping Hsu, Ren‐Hao Chan, Bo Lin, Po-Chuan Chen, Chien-Chang Pan, Keng-Fu Hsu, Jenn-Ren Hsiao, Yan‐Shen Shan, Meng-Ru Shen
Software Mentions: 5
Published: about 3 years ago

10.1038/s41398-019-0638-8

Implementing machine learning in bipolar diagnosis in China
Cited by: 10
Author(s): Yantao Ma, Jun Ji, Yun Huang, Huimin Gao, Zhiying Li, Wei Dong, Shuzhe Zhou, Yue Zhu, Weimin Dang, Tianhang Zhou, Haiqing Yu, Bin Yu, Yuefeng Long, Long Liu, Gary S. Sachs, Xinguang Yu
Software Mentions: 5
Published: about 5 years ago

10.3389/fcell.2020.616972

A Novel m6A Gene Signature Associated With Regulatory Immune Function for Prognosis Prediction in Clear-Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Siteng Chen, Ning Zhang, Encheng Zhang, Tao Wang, Lingge Jiang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-016-0951-7

Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer
Cited by: 18
Author(s): Mengyun Wu, Xiaofei Zhang, Dao‐Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan
Software Mentions: 5
Published: over 8 years ago

10.3389/fgene.2020.591667

Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: about 4 years ago

10.1186/1471-2105-13-59

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform
Cited by: 97
Author(s): Joanna Zhuang, Martin Widschwendter, Andrew E. Teschendorff
Software Mentions: 5
Published: over 12 years ago

10.1186/s12859-019-2607-x

BioReader: a text mining tool for performing classification of biomedical literature
Cited by: 43
Author(s): Christian Simon, Kristian Davidsen, Christina Hansen, Emily Seymour, Mike Bogetofte Barnkob, Lars Rønn Olsen
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2021.616507

Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients
Cited by: 7
Author(s): Jun Tan, Hecheng Zhu, Guihua Tang, Hongwei Liu, Siyi Wanggou, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Ming Zhao, Chao Ren, Xingjun Jiang, Yin Wu
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.723796

Prognostic Value and Immunological Characteristics of a Novel RNA Binding Protein Signature in Cutaneous Melanoma
Cited by: 5
Author(s): Jun Tian, Chongzhi Ma, Yang Li, Yang Sun, Yuan Zhang
Software Mentions: 5
Published: about 3 years ago

10.3389/fgene.2021.658323

Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0238947

Explaining the travelling behaviour of migrants using Facebook audience estimates
Cited by: 0
Author(s): Spyridon Spyratos, Michele Vespe, Franca Natale, Stefano Maria Iacus, Carlos Santamaría
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.9654

Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis
Cited by: 5
Author(s): Pengfei Liu, Weidong Tian
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-018-2149-7

Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0234552

Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.8312

Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.00909

Preoperative CT Radiomics Predicting the SSIGN Risk Groups in Patients With Clear Cell Renal Cell Carcinoma: Development and Multicenter Validation
Cited by: 3
Author(s): Yi Jiang, Wuchao Li, Chencui Huang, Chong Tian, Qi Chen, Xian‐Chun Zeng, Yin Cao, Yi Chen, Yintong Yang, Heng Liu, Yonghua Bo, Chenggong Luo, Yiming Li, Tijiang Zhang, Rongping Wang
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.6046

In silico engineering ofPseudomonasmetabolism reveals new biomarkers for increased biosurfactant production
Cited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.9658

A prognostic gene model of immune cell infiltration in diffuse large B-cell lymphoma
Cited by: 9
Author(s): Hao Zhou, Chang Zheng, Desheng Huang
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2020.00618

Predicting Progression-Free Survival Using MRI-Based Radiomics for Patients With Nonmetastatic Nasopharyngeal Carcinoma
Cited by: 32
Author(s): Hesong Shen, Yu Wang, Daihong Liu, Rongfei Lv, Yuanying Huang, Chao Peng, Shixi Jiang, Ying Wang, Yongpeng He, Lan Xiao, Hong Huang, Jianqing Sun, Jiuquan Zhang
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.4584

Empirical evaluation of data normalization methods for molecular classification
Cited by: 12
Author(s): Hsin‐Chieh Huang, Li‐Xuan Qin
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8128

Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma
Cited by: 57
Author(s): Yufeng Cheng, Hongwen Ma, Yuting Zhou
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.10462

Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
Cited by: 8
Author(s): Wenqian Qi, Qian Zhang
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12957-021-02246-x

Human nuclear receptors (NRs) genes have prognostic significance in hepatocellular carcinoma patients
Cited by: 9
Author(s): Guangtao Sun, Kai Sun, Chao Shen
Software Mentions: 5
Published: over 3 years ago

10.1111/acel.12915

Low plasma lysophosphatidylcholines are associated with impaired mitochondrial oxidative capacity in adults in the Baltimore Longitudinal Study of Aging
Cited by: 30
Author(s): Richard D. Semba, Pingbo Zhang, Fatemeh Adelnia, Kai Sun, Marta González-Freire, Norman Salem, Nicholas A. Brennan, Richard G. Spencer, Kenneth W. Fishbein, Mohammed Khadeer, Michelle Shardell, Ruin Moaddel, Luigi Ferrucci
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.590836

Positron Emission Tomography-Based Short-Term Efficacy Evaluation and Prediction in Patients With Non-Small Cell Lung Cancer Treated With Hypo-Fractionated Radiotherapy
Cited by: 3
Author(s): Yiqing Jiang, Qin Gao, Chen Han, Xiangxiang Shi, Jingbo Wu, Yue Chen, Yan Zhang, Haowen Pang, Sheng Lin
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2018.00360

Novel Nomogram for Preoperative Prediction of Early Recurrence in Intrahepatic Cholangiocarcinoma
Cited by: 79
Author(s): Wenjie Liang, Lei Xu, Pengfei Yang, Lele Zhang, Dalong Wan, Qiang Huang, Tianye Niu, Feng Chen
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.672674

Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
Cited by: 10
Author(s): Jianfeng Zheng, Jialu Guo, Huizhi Zhang, Benben Cao, XU Guomin, Zhifen Zhang, Jinyi Tong
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.599888

Non-Invasive Radiomics Approach Predict Invasiveness of Adamantinomatous Craniopharyngioma Before Surgery
Cited by: 11
Author(s): Guofo Ma, Jie Kang, Ning Qiao, Bochao Zhang, Xuzhu Chen, Guilin Li, Zhixian Gao, Songbai Gui
Software Mentions: 5
Published: almost 4 years ago

10.34133/2019/7937156

instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: almost 6 years ago

10.1186/s10020-021-00343-x

Long non-coding RNA profile study identifies a metabolism-related signature for colorectal cancer
Cited by: 19
Author(s): Yongqu Lu, Wendong Wang, Zhenzhen Liu, Junren Ma, Xin Zhou, Wei Fu
Software Mentions: 5
Published: over 3 years ago

10.1186/s10020-020-00185-z

The significance of m6A RNA methylation regulators in predicting the prognosis and clinical course of HBV-related hepatocellular carcinoma
Cited by: 33
Author(s): Qiongxuan Fang, Hongsong Chen
Software Mentions: 5
Published: over 4 years ago

10.1093/molbev/msab140

De Novo Mutation Rate Variation and Its Determinants in Chlamydomonas
Cited by: 16
Author(s): Eugenio López‐Cortegano, Rory J. Craig, Jobran Chebib, Toby Samuels, Andrew D. Morgan, Susanne A. Kraemer, Katharina B. Böndel, Rob W. Ness, Nick Colegrave, Peter D. Keightley
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-019-0464-9

High throughput proteomics identifies a high-accuracy 11 plasma protein biomarker signature for ovarian cancer
Cited by: 73
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, John Broberg, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9051034

A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium
Cited by: 3
Author(s): Carlos Sabater, Lorena Ruíz, Abelardo Margollés
Software Mentions: 5
Published: over 3 years ago

10.1128/mSystems.00230-19

Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection
Cited by: 18
Author(s): Thomas P. Quinn, Ionas Erb
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.202400

A DNA methylation age predictor for zebrafish
Cited by: 27
Author(s): Benjamin Mayne, Darren Korbie, Lisa M Kenchington, Ben J Ezzy, Oliver Berry, Simon Jarman
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.102820

Development and validation of a prognostic classifier based on HIF-1 signaling for hepatocellular carcinoma
Cited by: 22
Author(s): Feiwen Deng, Chen Dong, Xiaoli Wei, Shilin Lu, Xuan Luo, Jincan He, Junting Liu, Tiebao Meng, Anli Yang, Huanwei Chen
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.203046

Aging-related markers in rat urine revealed by dynamic metabolic profiling using machine learning
Cited by: 4
Author(s): Dan Shi, Qilong Tan, Jingqi Ruan, Zhen Tian, Xinyue Wang, Jinxiao Liu, Xin Liu, Zhipeng Liu, Yuntao Zhang, Chongde Sun, Yucun Niu
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.202170

A three-gene signature based on tumour microenvironment predicts overall survival of osteosarcoma in adolescents and young adults
Cited by: 10
Author(s): Chun-Kai Wen, Hongxue Wang, Han Wang, Hao Yuan Mo, Weiying Zhong, Jing Tang, Yuefeng Lu, Wenxian Zhou, Aihua Tan, Yan Liu, Weimin Xie
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.104134

The value of a metabolic reprogramming-related gene signature for pancreatic adenocarcinoma prognosis prediction
Cited by: 12
Author(s): Zhen Tan, Yubin Lei, Jin Xu, Si Shi, Jie Hua, Bo Zhang, Qingcai Meng, Jiang Liu, Yiyin Zhang, Miaoyan Wei, Xianjun Yu, Chen Liang
Software Mentions: 4
Published: about 4 years ago

10.18632/aging.103753

Eight immune-related genes predict survival outcomes and immune characteristics in breast cancer
Cited by: 2
Author(s): Xu Han, Gangjian Wang, Lili Zhu, Liu Hong, Bingjie Li
Software Mentions: 4
Published: over 4 years ago

10.18632/aging.102556

Robust immunoscore model to predict the response to anti-PD1 therapy in melanoma
Cited by: 14
Author(s): Run‐Cong Nie, Shu Qiang Yuan, Yun Wang, Yan Yu Cai, Shi Chen, Shu Man Li, Jie Zhou, Guo Ming Chen, Tian Qi Luo, Zhi Wei Zhou, Yuan Fang Li
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.203322

Identification of prognostic long non-coding RNA signature with potential drugs in hepatocellular carcinoma
Cited by: 0
Author(s): Fang Hao, Nan Wang, Xiang Wang, Yongjun Chen, Junqing Wang
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.202173

A novel immune-related genes prognosis biomarker for hepatocellular carcinoma
Cited by: 7
Author(s): Kunpeng Wang, Xinyi Chen, Chong Jin, Jinggang Mo, Hao Jiang, Bin Yi, Xiang Chen
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.203079

Identification and validation of a novel eight mutant-derived long non-coding RNAs signature as a prognostic biomarker for genome instability in low-grade glioma
Cited by: 12
Author(s): Aierpati Maimaiti, Xixian Wang, Yinan Pei, Nuerbiye Nuermaimaiti, Abudireheman Tuersunniyazi, Yaeraili Abula, Zhaohai Feng, Lei Jiang, Xin Shi, Maimaitijiang Kasimu
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.103624

POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer
Cited by: 6
Author(s): Jun Q. Lu, Xiaoyan Huang, Yaohui Wang, Jian‐Wei Xie, Jia-Bin Wang, Jiumao Lin, Qi‐Yue Chen, Long‐Long Cao, Ping Li, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 4
Published: about 4 years ago

10.1016/j.ajpath.2017.11.007

Fibroblasts Promote Inflammation and Pain via IL-1α Induction of the Monocyte Chemoattractant Chemokine (C-C Motif) Ligand 2
Cited by: 22
Author(s): Hannah L Paish, Nicolas Stewart Kalson, Graham R. Smith, Alicia del Carpio Pons, Thomas E. Baldock, Nicholas I. Smith, Katarzyna Swist-Szulik, David J. Weir, Michelle Bardgett, David J. Deehan, Derek A. Mann, Lee A. Borthwick
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-020-3344-x

Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery
Cited by: 15
Author(s): Xin Guan, George C. Runger, Li Liu
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-014-0394-y

MPAgenomics: an R package for multi-patient analysis of genomic markers
Cited by: 2
Author(s): Quentin Grimonprez, Alain Célisse, Samuel Blanck, Meyling Cheok, Martin Figeac, Guillemette Marot
Software Mentions: 4
Published: almost 10 years ago

Projects: cran: glmnet

Papers Mentioning glmnet 1,607