10.1186/s40425-018-0328-8

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients
Cited by: 140
Author(s): Priyanka B. Subrahmanyam, Zhiwan Dong, Daniel Gusenleitner, Anita Giobbie‐Hurder, Mariano Severgnini, Jun Zhou, Michael P. Manos, Lauren M. Eastman, Holden T. Maecker, F. Stephen Hodi
Software Mentions: 5
Published: over 8 years ago

10.7554/eLife.34779

Value generalization in human avoidance learning
Cited by: 31
Author(s): Agnes Norbury, Trevor W. Robbins, Ben Seymour
Software Mentions: 5
Published: over 8 years ago

10.3390/ijms21072403

Novel Autoantibody Signatures in Sera of Patients with Pancreatic Cancer, Chronic Pancreatitis and Autoimmune Pancreatitis: A Protein Microarray Profiling Approach
Cited by: 8
Author(s): Sahar Ghassem-Zadeh, Katrin Hufnagel, Andrea S. Bauer, Jean Louis Frossard, Masaru Yoshida, Hiromu Kutsumi, Hans Acha‐Orbea, Matthias Neulinger-Muñoz, Johannes A Vey, Christoph Eckert, Oliver Strobel, Jörg D. Hoheisel, Klaus Felix
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21082994

Identification of Key Genes Related to Lung Squamous Cell Carcinoma Using Bioinformatics Analysis
Cited by: 39
Author(s): Miaomiao Gao, Jie Zhu, Zhuo Huang, Zhengwei Xie
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21239169

Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile
Cited by: 28
Author(s): Mingjun Zheng, Heather Mullikin, Anna Hester, Bastian Czogalla, H Heidegger, Theresa� Vilsmaier, Aurelia Vattai, Anca Chelariu-Raicu, Udo Jeschke, Fabian Trillsch, Sven Mahner, Till Kaltofen
Software Mentions: 5
Published: over 5 years ago

10.1155/2021/5523749

Landscape of Immune Microenvironment in Epithelial Ovarian Cancer and Establishing Risk Model by Machine Learning
Cited by: 4
Author(s): Shiyi Liu, Ronghui Zhu, Zitao Wang, Wei Tan, Li Zhang, Yanqing Wang, Fangfang Dai, Mengqin Yuan, Y. Zheng, Dongyong Yang, Feiyan Wang, Xian Shu, Jian‐Qing He, Yu-Wei Zhang, Mali Wu, Zhanfeng Deng, Min Hu, Yanxiang Cheng, Yeqiang Liu
Software Mentions: 5
Published: almost 5 years ago

10.1155/2021/6641421

Prognostic Models for Nonmetastatic Triple-Negative Breast Cancer Based on the Pretreatment Serum Tumor Markers with Machine Learning
Cited by: 0
Author(s): Huihui Chen, Shijie Wu, Jun Hu, Kun Zhang, Kaimin Hu, Yingfeng Lu, Jiapan He, Tao Pan, Yiding Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.554214

Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.202281

Integrated bioinformatic analysis of RNA binding proteins in hepatocellular carcinoma
Cited by: 16
Author(s): Ling Wang, Zhen Zhang, Yuan Li, Yanyan Wan, Baocai Xing
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.728913

A Unified Framework for Inattention Estimation From Resting State Phase Synchrony Using Machine Learning
Cited by: 1
Author(s): Xun‐Heng Wang, Lihua Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2020.522383

Survival-Associated Alternative Splicing Events and Prognostic Signatures in Pancreatic Cancer
Cited by: 5
Author(s): Lichao Xu, Jianji Pan, Yanni Ding, Hongda Pan
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-77846-w

Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Cited by: 20
Author(s): Tânia Pinheiro, Ka Ying Florence Lip, Estéfani García‐Ríos, Amparo Querol, J. A. Teixeira, Walter van Gulik, José Manuel Guillamón, Lucı́lia Domingues
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-12-S13-S17

Stability of building gene regulatory networks with sparse autoregressive models
Cited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: over 14 years ago

10.1371/journal.pgen.1009018

The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
Cited by: 24
Author(s): Min‐Hua Zong, Marcus Alvarez, Arthur Ko, Yash V. Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Carlos A. Aguilar-Salinas, Teresa Tusié-Luna, Karen L. Mohlke, Markku Laakso, Kirsi H. Pietiläinen, Eran Halperin, Päivi Pajukanta
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-64829-0

Variable selection for inferential models with relatively high-dimensional data: Between method heterogeneity and covariate stability as adjuncts to robust selection
Cited by: 15
Author(s): Eliana Martins Lima, Peter N. Davies, Jasmeet Kaler, Fiona Lovatt, Martin J. Green
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-62754-w

Associations of C-reactive Protein with 25-hydroxyvitamin D in 24 Specific Diseases: A Cross-sectional Study from NHANES
Cited by: 5
Author(s): Fang Yang, Mengzi Sun, Chong Sun, Jiagen Li, Xiuning Yang, Chunli Bi, Min Wang, Liyuan Pu, Jianmeng Wang, Chunxiao Wang, Meizhen Xie, Yan Yao, Lina Jin
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.202896

Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma
Cited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.639059

Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-62573-z

Quantification for non-targeted LC/MS screening without standard substances
Cited by: 64
Author(s): Jaanus Liigand, Tingting Wang, Joshua J. Kellogg, Jørn Smedsgaard, Nadja B. Cech, Anneli Kruve
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-016-0951-7

Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer
Cited by: 18
Author(s): Mengyun Wu, Xiaofei Zhang, Dao‐Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pcbi.1008517

Network propagation of rare variants in Alzheimer’s disease reveals tissue-specific hub genes and communities
Cited by: 1
Author(s): Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.703033

A Novel Nomogram Based on Machine Learning-Pathomics Signature and Neutrophil to Lymphocyte Ratio for Survival Prediction of Bladder Cancer Patients
Cited by: 7
Author(s): Siteng Chen, Lingge Jiang, Encheng Zhang, Shanshan Hu, Tao Wang, Feng Gao, Ning Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-80453-4

Prognostic signature of lung adenocarcinoma based on stem cell-related genes
Cited by: 7
Author(s): Zhanghao Huang, Muqi Shi, Hao Zhou, Jinjie Wang, Haijian Zhang, Jia Hai Shi
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-019-2607-x

BioReader: a text mining tool for performing classification of biomedical literature
Cited by: 43
Author(s): Christian Simon, Kristian Davidsen, Christina Hansen, Emily Seymour, Mike Bogetofte Barnkob, Lars Rønn Olsen
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-53298-9

A pilot study of peripheral blood DNA methylation models as predictors of knee osteoarthritis radiographic progression: data from the Osteoarthritis Initiative (OAI)
Cited by: 10
Author(s): Christopher M. Dunn, Michael C. Nevitt, J.A. Lynch, Matlock A. Jeffries
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2021.723796

Prognostic Value and Immunological Characteristics of a Novel RNA Binding Protein Signature in Cutaneous Melanoma
Cited by: 5
Author(s): Jun Tian, Chongzhi Ma, Yang Li, Yang Sun, Yuan Zhang
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-019-48488-4

Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2021.616507

Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients
Cited by: 7
Author(s): Jun Tan, Hecheng Zhu, Guihua Tang, Hongwei Liu, Siyi Wanggou, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Ming Zhao, Chao Ren, Xingjun Jiang, Yin Wu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-46789-2

Resting-state prefrontal EEG biomarkers in correlation with MMSE scores in elderly individuals
Cited by: 38
Author(s): Jung-Mi Choi, Boncho Ku, Young Gooun You, Miok Jo, Minji Kwon, Youyoung Choi, Segyeong Jung, Soyoung Ryu, Eunjeong Park, Ho-Yeon Go, Gahye Kim, Wonseok Cha, Jaeuk U. Kim
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-44254-8

Honey bee predisposition of resistance to ubiquitous mite infestations
Cited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-46718-3

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-53811-0

An integrated nomogram combining lncRNAs classifier and clinicopathologic factors to predict the recurrence of head and neck squamous cell carcinoma
Cited by: 4
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Jinsong Piao, Qiong Zhang, Qian Wang, Lizhen He, Yan Wang, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2021.722803

Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets
Cited by: 9
Author(s): Yong Liu, Shengnan Cui, Jiayi Sun, Xin Yan, Dongran Han
Software Mentions: 5
Published: almost 5 years ago

10.34133/2019/7937156

instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: over 7 years ago

10.1186/s12859-018-2149-7

Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 8 years ago

10.1186/s12887-020-02411-3

Utility of medical record diagnostic codes to ascertain attention-deficit/hyperactivity disorder and learning disabilities in populations of children
Cited by: 6
Author(s): Yu Shi, Phillip J. Schulte, Andrew C. Hanson, Michael J. Zaccariello, Dayu Hu, Sheri Crow, Randall P. Flick, David O. Warner
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-018-25679-z

A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: over 8 years ago

10.1186/s12903-021-01587-z

A four-hypoxia-genes-based prognostic signature for oral squamous cell carcinoma
Cited by: 10
Author(s): Chenguang Zhao, Yingrui Zhou, Hongwei Ma, Jinhui Wang, Hongxu Guo, Hao Líu
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.4584

Empirical evaluation of data normalization methods for molecular classification
Cited by: 12
Author(s): Hsin‐Chieh Huang, Li‐Xuan Qin
Software Mentions: 5
Published: over 8 years ago

10.1186/s12883-021-02276-8

Construction of a risk prediction model for Alzheimer’s disease in the elderly population
Cited by: 10
Author(s): Lingling Wang, Ping Li, Ming Hou, Xiumin Zhang, Xiaolin Cao, Hongyan Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s12860-020-00295-w

Molecular docking and machine learning analysis of Abemaciclib in colon cancer
Cited by: 14
Author(s): José Liñares-Blanco, Cristian R. Munteanu, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2020.591667

Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2020.00499

Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
Cited by: 8
Author(s): Han Zhang, Chuan Qin, Hua Gan, Xiong Guo, Li Zhang
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: over 7 years ago

10.1186/s12874-016-0261-9

A comparative study: classification vs. user-based collaborative filtering for clinical prediction
Cited by: 14
Author(s): Hao Fang, Rachael Hageman Blair
Software Mentions: 5
Published: over 9 years ago

10.1186/s12859-019-2778-5

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: over 7 years ago

10.1038/srep43541

Early spatiotemporal-specific changes in intermediate signals are predictive of cytotoxic sensitivity to TNFα and co-treatments
Cited by: 9
Author(s): Lit‐Hsin Loo, Nicola Bougen-Zhukov, Wei-Ling Cecilia Tan
Software Mentions: 5
Published: over 9 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.9654

Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis
Cited by: 5
Author(s): Pengfei Liu, Weidong Tian
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.8312

Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.6046

In silico engineering of<i>Pseudomonas</i>metabolism reveals new biomarkers for increased biosurfactant production
Cited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: over 7 years ago

10.1186/s12874-020-01201-w

Re-evaluation of the comparative effectiveness of bootstrap-based optimism correction methods in the development of multivariable clinical prediction models
Cited by: 33
Author(s): Katsuhiro Iba, Tomohiro Shinozaki, Kazushi Maruo, Hisashi Noma
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9658

A prognostic gene model of immune cell infiltration in diffuse large B-cell lymphoma
Cited by: 9
Author(s): Hao Zhou, Chang Zheng, Desheng Huang
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.710767

N6-Methylandenosine-Related lncRNAs Predict Prognosis and Immunotherapy Response in Bladder Cancer
Cited by: 20
Author(s): Yuying Zhang, Baoyi Zhu, Minghui He, Yi Cai, Xiaoling Ying, Chonghe Jiang, Weidong Ji, Jing Zeng
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.8128

Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma
Cited by: 57
Author(s): Yufeng Cheng, Hongwen Ma, Yuting Zhou
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2288-14-99

Detection of independent associations in a large epidemiologic dataset: a comparison of random forests, boosted regression trees, conventional and penalized logistic regression for identifying independent factors associated with H1N1pdm influenza infections
Cited by: 33
Author(s): Yohann Mansiaux, Fabrice Carrat
Software Mentions: 5
Published: almost 12 years ago

10.7717/peerj.10462

Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
Cited by: 8
Author(s): Wenqian Qi, Qian Zhang
Software Mentions: 5
Published: over 5 years ago

10.1126/sciadv.abh0534

Cell-free DNA TAPS provides multimodal information for early cancer detection
Cited by: 36
Author(s): Paulina Siejka-Zielińska, Jingfei Cheng, Felix Jackson, Yibin Liu, Zahir Soonawalla, Srikanth Reddy, Michael Silva, Luminita Puta, Misti McCain, Emma L. Culver, Noor Bekkali, Benjamin Schuster-Böckler, Pier Francesco Palamara, Derek A. Mann, Helen L. Reeves, Eleanor Barnes, Shivan Sivakumar, Chun-Xiao Song
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41597-019-0337-6

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction
Cited by: 16
Author(s): Laura Bravo-Merodio, Animesh Acharjee, Jon Hazeldine, Conor Bentley, Mark Foster, Georgios V. Gkoutos, Janet M. Lord
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2019.01050

Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12957-021-02246-x

Human nuclear receptors (NRs) genes have prognostic significance in hepatocellular carcinoma patients
Cited by: 9
Author(s): Guangtao Sun, Kai Sun, Chao Shen
Software Mentions: 5
Published: over 5 years ago

10.1186/s12911-020-01271-2

Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12911-020-1115-2

A prognostic index based on a fourteen long non-coding RNA signature to predict the recurrence-free survival for muscle-invasive bladder cancer patients
Cited by: 3
Author(s): Xiaolong Zhang, Meng Zhang, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang
Software Mentions: 5
Published: about 6 years ago

10.1038/srep19244

Evaluation of the 2b-RAD method for genomic selection in scallop breeding
Cited by: 57
Author(s): Jun Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-017-15137-7

Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: almost 9 years ago

10.1186/s13014-020-01699-w

Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-021-01810-9

Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patients
Cited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: over 5 years ago

10.1098/rsos.201795

Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: over 5 years ago

10.3390/rs11050551

The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland Systems
Cited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2021.658323

Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-13-59

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform
Cited by: 97
Author(s): Joanna Zhuang, Martin Widschwendter, Andrew E. Teschendorff
Software Mentions: 5
Published: over 14 years ago

10.1371/journal.ppat.1009097

Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisition
Cited by: 17
Author(s): Laura Noël‐Romas, Michelle Perner, Refilwe P. Molatlhegi, Christina Farr Zuend, Amanda Mabhula, Sarah Hoger, Alana Lamont, Kenzie Birse, Alicia R. Berard, Stuart McCorrister, Garett Westmacott, Al Leslie, Vanessa Poliquin, Renee Heffron, Lyle R. McKinnon, Adam Burgener
Software Mentions: 5
Published: over 5 years ago

10.1016/j.prevetmed.2021.105395

Multiple model triangulation to identify factors associated with lameness in British sheep flocks
Cited by: 5
Author(s): Kate Lewis, Michael J. Green, Jessica D. Witt, Laura Green
Software Mentions: 5
Published: about 5 years ago

10.1093/rheumatology/keaa497

Identification and prediction of novel classes of long-term disease trajectories for patients with juvenile dermatomyositis using growth mixture models
Cited by: 5
Author(s): Claire T. Deakin, Charalampia Papadopoulou, Liza McCann, Neil Martin, Muthana Al-Obaidi, Sandrine Compeyrot-Lacassagne, Clarissa Pilkington, Sarah Tansley, Neil McHugh, Lucy R. Wedderburn, Bianca L De Stavola
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-019-2749-x

Efficient proximal gradient algorithm for inference of differential gene networks
Cited by: 3
Author(s): Chen Wang, Feng Gao, Georgios B. Giannakis, Gennaro D’Urso, Xiaodong Cai
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2021.633357

Identification of the Prognostic Signatures of Glioma With Different PTEN Status
Cited by: 12
Author(s): Pei Zhang, Xinyi Meng, Liqun Liu, Shengzhen Li, Yang Li, Sakhawat Ali, Shanhu Li, Jichuan Xiong, Xuefeng Li, Shouwei Li, Xia Qin, Lei Dong
Software Mentions: 5
Published: about 5 years ago

10.1186/s10020-021-00343-x

Long non-coding RNA profile study identifies a metabolism-related signature for colorectal cancer
Cited by: 19
Author(s): Yongqu Lu, Wendong Wang, Zhenzhen Liu, Junren Ma, Xin Zhou, Wei Fu
Software Mentions: 5
Published: about 5 years ago

10.3390/jcm10112524

Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: about 5 years ago

10.1186/s10020-020-00185-z

The significance of m6A RNA methylation regulators in predicting the prognosis and clinical course of HBV-related hepatocellular carcinoma
Cited by: 33
Author(s): Qiongxuan Fang, Hongsong Chen
Software Mentions: 5
Published: about 6 years ago

10.18632/aging.203289

A innovative prognostic symbol based on neutrophil extracellular traps (NETs)-related lncRNA signature in non-small-cell lung cancer
Cited by: 13
Author(s): Fang Chen, Fen Liu, Yong Wang, Shangkun Yuan, Renfang Chen, Xiaotong Qiu, Xiaoying Qian, Xinwei Zhang, Zhehao Xiao, Qian Wang, Biqi Fu, Yong Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s12859-019-2869-3

fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Cited by: 1
Author(s): Jiaxing Lin, Alexander B. Sibley, Ivo Shterev, Andrew B. Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Software Mentions: 5
Published: about 7 years ago

10.1093/molbev/msab140

De Novo Mutation Rate Variation and Its Determinants in <i>Chlamydomonas</i>
Cited by: 16
Author(s): Eugenio López‐Cortegano, Rory J. Craig, Jobran Chebib, Toby Samuels, Andrew D. Morgan, Susanne A. Kraemer, Katharina B. Böndel, Rob W. Ness, Nick Colegrave, Peter D. Keightley
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.649196

A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
Cited by: 1
Author(s): Jin Zhang, Min Chen, Yang Wen, Yin Zhang, Yunan Lu, Shengmeng Wang, Juncong Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.00663

Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: about 6 years ago

10.1155/2020/5041346

IgG Glycosylation Profile and the Glycan Score Are Associated with Type 2 Diabetes in Independent Chinese Populations: A Case-Control Study
Cited by: 12
Author(s): Zhiyuan Wu, Haibin Li, Di Liu, Lixin Tao, Jie Zhang, Baolu Liang, Xiangtong Liu, Xiaonan Wang, Xia Li, Youxin Wang, Wei Wang, Xiuhua Guo
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms9051034

A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium
Cited by: 3
Author(s): Carlos Sabater, Lorena Ruíz, Abelardo Margollés
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.102399

DNA methylation profile is a quantitative measure of biological aging in children
Cited by: 23
Author(s): Xiaohui Wu, Weidan Chen, Fangqin Lin, Qingsheng Huang, Jiayong Zhong, Huan Gao, Yanyan Song, Huiying Liang
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.691372

Prognostic Signature of Hepatocellular Carcinoma and Analysis of Immune Infiltration Based on m6A-Related lncRNAs
Cited by: 6
Author(s): Ting Guo, Kun He, Yifei Wang, Jingjing Sun, Yong Chen, Zelong Yang
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12859-021-04340-z

Randomized boosting with multivariable base-learners for high-dimensional variable selection and prediction
Cited by: 4
Author(s): Christian Staerk, Andreas Mayr
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2021.554779

A Weighted Gene Co-Expression Network Analysis–Derived Prognostic Model for Predicting Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 3
Author(s): Qingchuan Chen, Yongjun Tan, Chao Zhang, Zhe Zhang, Siwei Pan, Wei An, Hui Xu
Software Mentions: 5
Published: over 5 years ago

10.1097/MD.0000000000026212

The diagnostic value of a non-contrast computed tomography scan-based radiomics model for acute aortic dissection
Cited by: 3
Author(s): Zewang Zhou, Jinquan Yang, Shuntao Wang, Weihao Li, Lei Xie, Yifan Li, Changzheng Zhang
Software Mentions: 5
Published: about 5 years ago

10.18632/aging.202282

A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling
Cited by: 11
Author(s): Xiaoyu Guo, Guanhua Zhang, Zhenning Wang, Hao Duan, Tian Xie, Lingming Liang, Rui Cui, Hongrong Hu, Yi Wu, Jiajun Dong, Zhenqiang He, Yonggao Mou
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-15-S10-S1

AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data
Cited by: 6
Author(s): Wenbao Yu, Taesung Park
Software Mentions: 5
Published: over 11 years ago

10.3389/fonc.2021.620945

Individualized Prediction of Colorectal Cancer Metastasis Using a Radiogenomics Approach
Cited by: 2
Author(s): Qin Liu, Jie Li, Lin Xu, Jiasi Wang, Zong Yuan Zeng, Jiangping Fu, Xuan Huang, Yanpeng Chu, Jing Wang, Hongyu Zhang, Fanxin Zeng
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.580809

The Growth Trend Predictions in Pulmonary Ground Glass Nodules Based on Radiomic CT Features
Cited by: 8
Author(s): Chen Gao, Jing Yan, Yifan Luo, Linyu Wu, Peipei Pang, Ping Xiang, Maosheng Xu
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13075-015-0682-6

Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Cited by: 42
Author(s): D. James Haddon, Vivian K. Diep, J. M. Price, Cindy Limb, Paul J. Utz, Imelda Balboni
Software Mentions: 5
Published: about 11 years ago

10.1111/jcmm.14556

A prognostic 10‐lncRNA expression signature for predicting the risk of tumour recurrence in breast cancer patients
Cited by: 16
Author(s): Jianing Tang, Jiangbo Ren, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Mengxin Lü, Yan Gong
Software Mentions: 5
Published: almost 7 years ago

10.3390/jcm9041205

The Integration of qSOFA with Clinical Variables and Serum Biomarkers Improves the Prognostic Value of qSOFA Alone in Patients with Suspected or Confirmed Sepsis at ED Admission
Cited by: 14
Author(s): Filippo Mearelli, Giulia Barbati, Chiara Casarsa, Carlo Giansante, Andrea Breglia, Andrea Spica, Cristina Moras, Gaia Olivieri, Alessandro Agostino Occhipinti, Margherita De Nardo, Francesca Spagnol, Nicola Fiotti, Filippo Giorgio Di Girolamo, Maurizio Ruscio, Luigi Mario Castello, Efrem Colonetti, Rossella Marino, Claudio Ronco, Michela Zanetti, Enrico Lupia, María Lorenza Muiesan, Salvatore Di Somma, Gian Carlo Avanzi, Gianni Biolo
Software Mentions: 5
Published: over 6 years ago

10.1002/cam4.4109

A prognostic nomogram based on competing endogenous RNA network for clear‐cell renal cell carcinoma
Cited by: 2
Author(s): Yun Peng, Sanlan Wu, Zihan Xu, Dingkun Hou, Nan Li, Zheyu Zhang, Lili Wang, Haitao Wang
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-016-3460-1

Enumerateblood – an R package to estimate the cellular composition of whole blood from Affymetrix Gene ST gene expression profiles
Cited by: 8
Author(s): Casey P. Shannon, Robert Balshaw, Virginia Chen, Zsuzsanna Hollander, Mustafa Toma, Bruce M. McManus, J. Mark FitzGerald, Don D. Sin, Raymond T. Ng, Scott J. Tebbutt
Software Mentions: 5
Published: over 9 years ago