Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month

Papers Mentioning glmnet 1,607

10.1155/2020/5041346
IgG Glycosylation Profile and the Glycan Score Are Associated with Type 2 Diabetes in Independent Chinese Populations: A Case-Control Study
Cited by: 12
Author(s): Zhiyuan Wu, Haibin Li, Di Liu, Lixin Tao, Jie Zhang, Baolu Liang, Xiangtong Liu, Xiaonan Wang, Xia Li, Youxin Wang, Wei Wang, Xiuhua Guo
Software Mentions: 5
Published: over 4 years ago
10.3389/fpsyg.2018.01913
The Effect of Moral Congruence of Calls to Action and Salient Social Norms on Online Charitable Donations: A Protocol Study
Cited by: 10
Author(s): Nikola Erceg, Matthias Burghart, Alessia Cottone, Jessica Lorimer, Kiran Manku, Hannah Pütz, Denis Vlašiček, Manou Willems
Software Mentions: 5
Published: about 6 years ago
10.3389/fsurg.2021.665115
Identification and Validation of a Prognostic 5-Protein Signature for Biochemical Recurrence Following Radical Prostatectomy for Prostate Cancer
Cited by: 1
Author(s): Daojun Lv, Zanfeng Cao, Wenjie Li, Haige Zheng, Xiangkun Wu, Yongda Liu, Danan Gu, Guohua Zeng
Software Mentions: 5
Published: over 3 years ago
10.1002/gepi.20543
SNP Selection in genome-wide and candidate gene studies via penalized logistic regression
Cited by: 180
Author(s): Kristin L. Ayers, Heather J. Cordell
Software Mentions: 5
Published: about 14 years ago
10.1534/genetics.119.302138
Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance
Cited by: 28
Author(s): Rafael F. Guerrero, Samuel V. Scarpino, João V. Rodrigues, Daniel L. Hartl, C. Brandon Ogbunugafor
Software Mentions: 5
Published: over 5 years ago
10.18632/oncotarget.26578
Preoperative MRI-radiomics features improve prediction of survival in glioblastoma patients over MGMT methylation status alone
Cited by: 33
Author(s): Florent Tixier, Hyemin Um, Dalton Bermudez, Aditi Iyer, Aditya Apte, Maya Srikanth Graham, Kathryn Nevel, Joseph O. Deasy, Robert J. Young, Harini Veeraraghavan
Software Mentions: 5
Published: almost 6 years ago
10.1534/g3.118.200563
Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants
Cited by: 32
Author(s): Thomas J. Y. Kono, Lei Li, Ching-Hua Shih, Paul Hoffman, Peter L. Morrell, Justin C. Fay
Software Mentions: 5
Published: about 6 years ago
10.1186/s12967-020-02323-x
Development of an autophagy-related gene expression signature for prognosis prediction in prostate cancer patients
Cited by: 63
Author(s): Daixing Hu, Li Jiang, Shengjun Luo, Xin Zhao, Hao Hu, Guozhi Zhao, Wei Tang
Software Mentions: 5
Published: over 4 years ago
10.1007/s12072-019-09962-3
Identification and validation of a prognostic four-genes signature for hepatocellular carcinoma: integrated ceRNA network analysis
Cited by: 41
Author(s): Yongcong Yan, Yaobin Lu, Kai Mao, Mengyu Zhang, Haohan Liu, Qicun Zhou, Jianhong Lin, Jianlong Zhang, Jie Wang, Zhiyu Xiao
Software Mentions: 5
Published: over 5 years ago
10.1186/s12967-020-02233-y
IRGS: an immune-related gene classifier for lung adenocarcinoma prognosis
Cited by: 22
Author(s): Xiaoshun Shi, Ruidong Li, Xiaoying Dong, Allen M. Chen, Xiguang Liu, Di Lu, Siyang Feng, He Wang, Kaican Cai
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12967-020-02522-6
Immune-related lncRNAs as predictors of survival in breast cancer: a prognostic signature
Cited by: 66
Author(s): Wei Ma, Fangkun Zhao, Xinmiao Yu, Sheng Guan, Huandan Suo, Tao Zuo, Yue Qiu, Yunfei Wu, Yu Cao, Feng Jin
Software Mentions: 5
Published: about 4 years ago
10.1186/s12967-020-02512-8
Comprehensive profiling of immune-related genes in soft tissue sarcoma patients
Cited by: 15
Author(s): Chuan Hu, Bin Chen, Zhangheng Huang, Chuan Liu, Lin Ye, Cailin Wang, Yuexin Tong, Jiaxin Yang, Chengliang Zhao
Software Mentions: 5
Published: about 4 years ago
10.1111/jcmm.14556
A prognostic 10‐lncRNA expression signature for predicting the risk of tumour recurrence in breast cancer patients
Cited by: 16
Author(s): Jianing Tang, Jiangbo Ren, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Mengxin Lü, Yan Gong
Software Mentions: 5
Published: over 5 years ago
10.1186/s13018-021-02425-2
Development and validation of a nomogram predicting the risk of recurrent lumbar disk herniation within 6 months after percutaneous endoscopic lumbar discectomy
Cited by: 17
Author(s): Mengxian Jia, Yadong Sheng, Guoliang Chen, Wenbin Zhang, Jiajin Lin, Shan Lu, Fayi Li, Jinwei Ying, Hui Teng
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2020.554214
Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago
10.18632/aging.202281
Integrated bioinformatic analysis of RNA binding proteins in hepatocellular carcinoma
Cited by: 16
Author(s): Ling Wang, Zhen Zhang, Yuan Li, Yanyan Wan, Baocai Xing
Software Mentions: 5
Published: almost 4 years ago
10.3389/fgene.2021.728913
A Unified Framework for Inattention Estimation From Resting State Phase Synchrony Using Machine Learning
Cited by: 1
Author(s): Xun‐Heng Wang, Lihua Li
Software Mentions: 5
Published: about 3 years ago
10.3389/fgene.2020.522383
Survival-Associated Alternative Splicing Events and Prognostic Signatures in Pancreatic Cancer
Cited by: 5
Author(s): Lichao Xu, Jianji Pan, Yanni Ding, Hongda Pan
Software Mentions: 5
Published: about 4 years ago
10.1155/2021/6641421
Prognostic Models for Nonmetastatic Triple-Negative Breast Cancer Based on the Pretreatment Serum Tumor Markers with Machine Learning
Cited by: 0
Author(s): Huihui Chen, Shijie Wu, Jun Hu, Kun Zhang, Kaimin Hu, Yingfeng Lu, Jiapan He, Tao Pan, Yiding Chen
Software Mentions: 5
Published: over 3 years ago
10.1186/1471-2105-12-S13-S17
Stability of building gene regulatory networks with sparse autoregressive models
Cited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: almost 13 years ago
10.1155/2021/5523749
Landscape of Immune Microenvironment in Epithelial Ovarian Cancer and Establishing Risk Model by Machine Learning
Cited by: 4
Author(s): Shiyi Liu, Ronghui Zhu, Zitao Wang, Wei Tan, Li Zhang, Yanqing Wang, Fangfang Dai, Mengqin Yuan, Y. Zheng, Dongyong Yang, Feiyan Wang, Xian Shu, Jian‐Qing He, Yu-Wei Zhang, Mali Wu, Zhanfeng Deng, Min Hu, Yanxiang Cheng, Yeqiang Liu
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pgen.1009018
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
Cited by: 24
Author(s): Min‐Hua Zong, Marcus Alvarez, Arthur Ko, Yash V. Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Carlos A. Aguilar-Salinas, Teresa Tusié-Luna, Karen L. Mohlke, Markku Laakso, Kirsi H. Pietiläinen, Eran Halperin, Päivi Pajukanta
Software Mentions: 5
Published: about 4 years ago
10.3390/ijms21072403
Novel Autoantibody Signatures in Sera of Patients with Pancreatic Cancer, Chronic Pancreatitis and Autoimmune Pancreatitis: A Protein Microarray Profiling Approach
Cited by: 8
Author(s): Sahar Ghassem-Zadeh, Katrin Hufnagel, Andrea S. Bauer, Jean Louis Frossard, Masaru Yoshida, Hiromu Kutsumi, Hans Acha‐Orbea, Matthias Neulinger-Muñoz, Johannes A Vey, Christoph Eckert, Oliver Strobel, Jörg D. Hoheisel, Klaus Felix
Software Mentions: 5
Published: over 4 years ago
10.3390/ijms21082994
Identification of Key Genes Related to Lung Squamous Cell Carcinoma Using Bioinformatics Analysis
Cited by: 39
Author(s): Miaomiao Gao, Jie Zhu, Zhuo Huang, Zhengwei Xie
Software Mentions: 5
Published: over 4 years ago
10.18632/aging.202896
Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma
Cited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.639059
Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago
10.3390/ijms21239169
Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile
Cited by: 28
Author(s): Mingjun Zheng, Heather Mullikin, Anna Hester, Bastian Czogalla, H Heidegger, Theresa� Vilsmaier, Aurelia Vattai, Anca Chelariu-Raicu, Udo Jeschke, Fabian Trillsch, Sven Mahner, Till Kaltofen
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12859-016-0951-7
Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer
Cited by: 18
Author(s): Mengyun Wu, Xiaofei Zhang, Dao‐Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan
Software Mentions: 5
Published: over 8 years ago
10.1371/journal.pcbi.1008517
Network propagation of rare variants in Alzheimer’s disease reveals tissue-specific hub genes and communities
Cited by: 1
Author(s): Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann
Software Mentions: 5
Published: almost 4 years ago
10.3389/fonc.2021.703033
A Novel Nomogram Based on Machine Learning-Pathomics Signature and Neutrophil to Lymphocyte Ratio for Survival Prediction of Bladder Cancer Patients
Cited by: 7
Author(s): Siteng Chen, Lingge Jiang, Encheng Zhang, Shanshan Hu, Tao Wang, Feng Gao, Ning Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.34779
Value generalization in human avoidance learning
Cited by: 31
Author(s): Agnes Norbury, Trevor W. Robbins, Ben Seymour
Software Mentions: 5
Published: over 6 years ago
10.1186/s12859-019-2607-x
BioReader: a text mining tool for performing classification of biomedical literature
Cited by: 43
Author(s): Christian Simon, Kristian Davidsen, Christina Hansen, Emily Seymour, Mike Bogetofte Barnkob, Lars Rønn Olsen
Software Mentions: 5
Published: almost 6 years ago
10.3389/fgene.2021.723796
Prognostic Value and Immunological Characteristics of a Novel RNA Binding Protein Signature in Cutaneous Melanoma
Cited by: 5
Author(s): Jun Tian, Chongzhi Ma, Yang Li, Yang Sun, Yuan Zhang
Software Mentions: 5
Published: about 3 years ago
10.1186/s40425-018-0328-8
Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients
Cited by: 140
Author(s): Priyanka B. Subrahmanyam, Zhiwan Dong, Daniel Gusenleitner, Anita Giobbie‐Hurder, Mariano Severgnini, Jun Zhou, Michael P. Manos, Lauren M. Eastman, Holden T. Maecker, F. Stephen Hodi
Software Mentions: 5
Published: over 6 years ago
10.3389/fgene.2021.616507
Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients
Cited by: 7
Author(s): Jun Tan, Hecheng Zhu, Guihua Tang, Hongwei Liu, Siyi Wanggou, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Ming Zhao, Chao Ren, Xingjun Jiang, Yin Wu
Software Mentions: 5
Published: over 3 years ago
10.7150/ijms.49449
Identification and Validation of Six Autophagy-related Long Non-coding RNAs as Prognostic Signature in Colorectal Cancer
Cited by: 19
Author(s): Lin Cheng, Tong Han, Zheyu Zhang, Pan Yi, Chunhu Zhang, Sifang Zhang, Weijun Peng
Software Mentions: 5
Published: almost 4 years ago
10.7150/ijms.48432
A Quantitative and Radiomics approach to monitoring ARDS in COVID-19 patients based on chest CT: a retrospective cohort study
Cited by: 18
Author(s): Yuntian Chen, Yi Wang, Yuwei Zhang, Na Zhang, Shuang Zhao, Han Zeng, Weiming Deng, Zixing Huang, Sanyuan Liu, Bin Song
Software Mentions: 5
Published: almost 5 years ago
10.3389/fgene.2021.722803
Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets
Cited by: 9
Author(s): Yong Liu, Shengnan Cui, Jiayi Sun, Xin Yan, Dongran Han
Software Mentions: 5
Published: about 3 years ago
10.34133/2019/7937156
instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12859-018-2149-7
Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 6 years ago
10.1186/s12887-020-02411-3
Utility of medical record diagnostic codes to ascertain attention-deficit/hyperactivity disorder and learning disabilities in populations of children
Cited by: 6
Author(s): Yu Shi, Phillip J. Schulte, Andrew C. Hanson, Michael J. Zaccariello, Dayu Hu, Sheri Crow, Randall P. Flick, David O. Warner
Software Mentions: 5
Published: about 4 years ago
10.1186/s12903-021-01587-z
A four-hypoxia-genes-based prognostic signature for oral squamous cell carcinoma
Cited by: 10
Author(s): Chenguang Zhao, Yingrui Zhou, Hongwei Ma, Jinhui Wang, Hongxu Guo, Hao Líu
Software Mentions: 5
Published: over 3 years ago
10.7717/peerj.4584
Empirical evaluation of data normalization methods for molecular classification
Cited by: 12
Author(s): Hsin‐Chieh Huang, Li‐Xuan Qin
Software Mentions: 5
Published: over 6 years ago
10.1186/s12883-021-02276-8
Construction of a risk prediction model for Alzheimer’s disease in the elderly population
Cited by: 10
Author(s): Lingling Wang, Ping Li, Ming Hou, Xiumin Zhang, Xiaolin Cao, Hongyan Li
Software Mentions: 5
Published: over 3 years ago
10.1186/s12860-020-00295-w
Molecular docking and machine learning analysis of Abemaciclib in colon cancer
Cited by: 14
Author(s): José Liñares-Blanco, Cristian R. Munteanu, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2020.591667
Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: about 4 years ago
10.3389/fgene.2020.00499
Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer
Cited by: 8
Author(s): Han Zhang, Chuan Qin, Hua Gan, Xiong Guo, Li Zhang
Software Mentions: 5
Published: over 4 years ago
10.18632/oncotarget.15718
The varied distribution and impact of <i>RAS</i> codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
Cited by: 24
Author(s): Caleb K. Stein, Charlotte Pawlyn, Shweta S. Chavan, Leo Rasche, Niels Weinhold, Adam Corken, Amy Buros, Pieter Sonneveld, Graham Jackson, Ola Landgren, Tariq I. Mughal, Jie He, Bart Barlogie, P. Leif Bergsagel, Faith E. Davies, Brian A. Walker, Gareth J. Morgan
Software Mentions: 5
Published: over 7 years ago
10.3389/fonc.2018.00674
Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12874-016-0261-9
A comparative study: classification vs. user-based collaborative filtering for clinical prediction
Cited by: 14
Author(s): Hao Fang, Rachael Hageman Blair
Software Mentions: 5
Published: almost 8 years ago
10.1186/s12859-019-2778-5
eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Cited by: 26
Author(s): Julián Candia, John S. Tsang
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2020.541849
Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago
10.7717/peerj.9654
Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis
Cited by: 5
Author(s): Pengfei Liu, Weidong Tian
Software Mentions: 5
Published: over 4 years ago
10.7717/peerj.8312
Identification and validation of a three-gene signature as a candidate prognostic biomarker for lower grade glioma
Cited by: 26
Author(s): Kai Xiao, Qing Liu, Gang Peng, Jun Su, Chaoying Qin, Xiangyu Wang
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.6046
In silico engineering of<i>Pseudomonas</i>metabolism reveals new biomarkers for increased biosurfactant production
Cited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12874-020-01201-w
Re-evaluation of the comparative effectiveness of bootstrap-based optimism correction methods in the development of multivariable clinical prediction models
Cited by: 33
Author(s): Katsuhiro Iba, Tomohiro Shinozaki, Kazushi Maruo, Hisashi Noma
Software Mentions: 5
Published: almost 4 years ago
10.7717/peerj.9658
A prognostic gene model of immune cell infiltration in diffuse large B-cell lymphoma
Cited by: 9
Author(s): Hao Zhou, Chang Zheng, Desheng Huang
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2021.710767
N6-Methylandenosine-Related lncRNAs Predict Prognosis and Immunotherapy Response in Bladder Cancer
Cited by: 20
Author(s): Yuying Zhang, Baoyi Zhu, Minghui He, Yi Cai, Xiaoling Ying, Chonghe Jiang, Weidong Ji, Jing Zeng
Software Mentions: 5
Published: over 3 years ago
10.1038/s41398-019-0638-8
Implementing machine learning in bipolar diagnosis in China
Cited by: 10
Author(s): Yantao Ma, Jun Ji, Yun Huang, Huimin Gao, Zhiying Li, Wei Dong, Shuzhe Zhou, Yue Zhu, Weimin Dang, Tianhang Zhou, Haiqing Yu, Bin Yu, Yuefeng Long, Long Liu, Gary S. Sachs, Xinguang Yu
Software Mentions: 5
Published: about 5 years ago
10.1128/mSystems.00230-19
Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection
Cited by: 18
Author(s): Thomas P. Quinn, Ionas Erb
Software Mentions: 5
Published: over 4 years ago
10.7717/peerj.8128
Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma
Cited by: 57
Author(s): Yufeng Cheng, Hongwen Ma, Yuting Zhou
Software Mentions: 5
Published: almost 5 years ago
10.1186/1471-2288-14-99
Detection of independent associations in a large epidemiologic dataset: a comparison of random forests, boosted regression trees, conventional and penalized logistic regression for identifying independent factors associated with H1N1pdm influenza infections
Cited by: 33
Author(s): Yohann Mansiaux, Fabrice Carrat
Software Mentions: 5
Published: about 10 years ago
10.7717/peerj.10462
Development and clinical validation of a 3-miRNA signature to predict prognosis of gastric cancer
Cited by: 8
Author(s): Wenqian Qi, Qian Zhang
Software Mentions: 5
Published: almost 4 years ago
10.1093/sleep/zsy186
Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: about 6 years ago
10.3389/fonc.2019.01050
Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: about 5 years ago
10.1186/s12957-021-02246-x
Human nuclear receptors (NRs) genes have prognostic significance in hepatocellular carcinoma patients
Cited by: 9
Author(s): Guangtao Sun, Kai Sun, Chao Shen
Software Mentions: 5
Published: over 3 years ago
10.1186/s12911-020-01271-2
Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: about 4 years ago
10.1186/s12911-020-1115-2
A prognostic index based on a fourteen long non-coding RNA signature to predict the recurrence-free survival for muscle-invasive bladder cancer patients
Cited by: 3
Author(s): Xiaolong Zhang, Meng Zhang, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2021.658323
Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: over 3 years ago
10.1186/1471-2105-13-59
A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform
Cited by: 97
Author(s): Joanna Zhuang, Martin Widschwendter, Andrew E. Teschendorff
Software Mentions: 5
Published: over 12 years ago
10.1186/s12859-019-2749-x
Efficient proximal gradient algorithm for inference of differential gene networks
Cited by: 3
Author(s): Chen Wang, Feng Gao, Georgios B. Giannakis, Gennaro D’Urso, Xiaodong Cai
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2021.633357
Identification of the Prognostic Signatures of Glioma With Different PTEN Status
Cited by: 12
Author(s): Pei Zhang, Xinyi Meng, Liqun Liu, Shengzhen Li, Yang Li, Sakhawat Ali, Shanhu Li, Jichuan Xiong, Xuefeng Li, Shouwei Li, Xia Qin, Lei Dong
Software Mentions: 5
Published: over 3 years ago
10.1186/s10020-021-00343-x
Long non-coding RNA profile study identifies a metabolism-related signature for colorectal cancer
Cited by: 19
Author(s): Yongqu Lu, Wendong Wang, Zhenzhen Liu, Junren Ma, Xin Zhou, Wei Fu
Software Mentions: 5
Published: over 3 years ago
10.1186/s10020-020-00185-z
The significance of m6A RNA methylation regulators in predicting the prognosis and clinical course of HBV-related hepatocellular carcinoma
Cited by: 33
Author(s): Qiongxuan Fang, Hongsong Chen
Software Mentions: 5
Published: over 4 years ago
10.18632/aging.203289
A innovative prognostic symbol based on neutrophil extracellular traps (NETs)-related lncRNA signature in non-small-cell lung cancer
Cited by: 13
Author(s): Fang Chen, Fen Liu, Yong Wang, Shangkun Yuan, Renfang Chen, Xiaotong Qiu, Xiaoying Qian, Xinwei Zhang, Zhehao Xiao, Qian Wang, Biqi Fu, Yong Li
Software Mentions: 5
Published: over 3 years ago
10.1186/s12859-019-2869-3
fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Cited by: 1
Author(s): Jiaxing Lin, Alexander B. Sibley, Ivo Shterev, Andrew B. Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Software Mentions: 5
Published: over 5 years ago
10.1093/molbev/msab140
De Novo Mutation Rate Variation and Its Determinants in <i>Chlamydomonas</i>
Cited by: 16
Author(s): Eugenio López‐Cortegano, Rory J. Craig, Jobran Chebib, Toby Samuels, Andrew D. Morgan, Susanne A. Kraemer, Katharina B. Böndel, Rob W. Ness, Nick Colegrave, Peter D. Keightley
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2021.649196
A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
Cited by: 1
Author(s): Jin Zhang, Min Chen, Yang Wen, Yin Zhang, Yunan Lu, Shengmeng Wang, Juncong Chen
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2020.00663
Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
Cited by: 29
Author(s): Shenyu Wei, Jiahua Lu, Jianying Lou, Connie R. Shi, Shaowei Mo, Yaojian Shao, Junjie Ni, Wu Zhang, Xiangdong Cheng
Software Mentions: 5
Published: over 4 years ago
10.3390/microorganisms9051034
A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium
Cited by: 3
Author(s): Carlos Sabater, Lorena Ruíz, Abelardo Margollés
Software Mentions: 5
Published: over 3 years ago
10.18632/aging.102399
DNA methylation profile is a quantitative measure of biological aging in children
Cited by: 23
Author(s): Xiaohui Wu, Weidan Chen, Fangqin Lin, Qingsheng Huang, Jiayong Zhong, Huan Gao, Yanyan Song, Huiying Liang
Software Mentions: 5
Published: about 5 years ago
10.3389/fonc.2021.691372
Prognostic Signature of Hepatocellular Carcinoma and Analysis of Immune Infiltration Based on m6A-Related lncRNAs
Cited by: 6
Author(s): Ting Guo, Kun He, Yifei Wang, Jingjing Sun, Yong Chen, Zelong Yang
Software Mentions: 5
Published: about 3 years ago
10.1186/s12859-021-04340-z
Randomized boosting with multivariable base-learners for high-dimensional variable selection and prediction
Cited by: 4
Author(s): Christian Staerk, Andreas Mayr
Software Mentions: 5
Published: about 3 years ago
10.3389/fonc.2021.554779
A Weighted Gene Co-Expression Network Analysis–Derived Prognostic Model for Predicting Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 3
Author(s): Qingchuan Chen, Yongjun Tan, Chao Zhang, Zhe Zhang, Siwei Pan, Wei An, Hui Xu
Software Mentions: 5
Published: over 3 years ago
10.1097/MD.0000000000026212
The diagnostic value of a non-contrast computed tomography scan-based radiomics model for acute aortic dissection
Cited by: 3
Author(s): Zewang Zhou, Jinquan Yang, Shuntao Wang, Weihao Li, Lei Xie, Yifan Li, Changzheng Zhang
Software Mentions: 5
Published: over 3 years ago
10.18632/aging.202282
A novel Foxp3-related immune prognostic signature for glioblastoma multiforme based on immunogenomic profiling
Cited by: 11
Author(s): Xiaoyu Guo, Guanhua Zhang, Zhenning Wang, Hao Duan, Tian Xie, Lingming Liang, Rui Cui, Hongrong Hu, Yi Wu, Jiajun Dong, Zhenqiang He, Yonggao Mou
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-020-77846-w
Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Cited by: 20
Author(s): Tânia Pinheiro, Ka Ying Florence Lip, Estéfani García‐Ríos, Amparo Querol, J. A. Teixeira, Walter van Gulik, José Manuel Guillamón, Lucı́lia Domingues
Software Mentions: 5
Published: almost 4 years ago
10.1186/1471-2164-15-S10-S1
AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data
Cited by: 6
Author(s): Wenbao Yu, Taesung Park
Software Mentions: 5
Published: almost 10 years ago
10.1038/s41598-020-64829-0
Variable selection for inferential models with relatively high-dimensional data: Between method heterogeneity and covariate stability as adjuncts to robust selection
Cited by: 15
Author(s): Eliana Martins Lima, Peter N. Davies, Jasmeet Kaler, Fiona Lovatt, Martin J. Green
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2021.620945
Individualized Prediction of Colorectal Cancer Metastasis Using a Radiogenomics Approach
Cited by: 2
Author(s): Qin Liu, Jie Li, Lin Xu, Jiasi Wang, Zong Yuan Zeng, Jiangping Fu, Xuan Huang, Yanpeng Chu, Jing Wang, Hongyu Zhang, Fanxin Zeng
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2020.580809
The Growth Trend Predictions in Pulmonary Ground Glass Nodules Based on Radiomic CT Features
Cited by: 8
Author(s): Chen Gao, Jing Yan, Yifan Luo, Linyu Wu, Peipei Pang, Ping Xiang, Maosheng Xu
Software Mentions: 5
Published: about 4 years ago
10.1038/s41598-020-62573-z
Quantification for non-targeted LC/MS screening without standard substances
Cited by: 64
Author(s): Jaanus Liigand, Tingting Wang, Joshua J. Kellogg, Jørn Smedsgaard, Nadja B. Cech, Anneli Kruve
Software Mentions: 5
Published: over 4 years ago
10.1186/s13075-015-0682-6
Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Cited by: 42
Author(s): D. James Haddon, Vivian K. Diep, J. M. Price, Cindy Limb, Paul J. Utz, Imelda Balboni
Software Mentions: 5
Published: over 9 years ago
10.1038/s41598-020-62754-w
Associations of C-reactive Protein with 25-hydroxyvitamin D in 24 Specific Diseases: A Cross-sectional Study from NHANES
Cited by: 5
Author(s): Fang Yang, Mengzi Sun, Chong Sun, Jiagen Li, Xiuning Yang, Chunli Bi, Min Wang, Liyuan Pu, Jianmeng Wang, Chunxiao Wang, Meizhen Xie, Yan Yao, Lina Jin
Software Mentions: 5
Published: over 4 years ago
10.1002/cam4.4109
A prognostic nomogram based on competing endogenous RNA network for clear‐cell renal cell carcinoma
Cited by: 2
Author(s): Yun Peng, Sanlan Wu, Zihan Xu, Dingkun Hou, Nan Li, Zheyu Zhang, Lili Wang, Haitao Wang
Software Mentions: 5
Published: over 3 years ago
10.1186/s12864-016-3460-1
Enumerateblood – an R package to estimate the cellular composition of whole blood from Affymetrix Gene ST gene expression profiles
Cited by: 8
Author(s): Casey P. Shannon, Robert Balshaw, Virginia Chen, Zsuzsanna Hollander, Mustafa Toma, Bruce M. McManus, J. Mark FitzGerald, Don D. Sin, Raymond T. Ng, Scott J. Tebbutt
Software Mentions: 5
Published: almost 8 years ago
10.1038/s41598-019-53811-0
An integrated nomogram combining lncRNAs classifier and clinicopathologic factors to predict the recurrence of head and neck squamous cell carcinoma
Cited by: 4
Author(s): Jie Cui, Qingquan Wen, Xiaojie Tan, Jinsong Piao, Qiong Zhang, Qian Wang, Lizhen He, Yan Wang, Zhe Chen, Genglong Liu
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-019-46718-3
Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-019-46789-2
Resting-state prefrontal EEG biomarkers in correlation with MMSE scores in elderly individuals
Cited by: 38
Author(s): Jung-Mi Choi, Boncho Ku, Young Gooun You, Miok Jo, Minji Kwon, Youyoung Choi, Segyeong Jung, Soyoung Ryu, Eunjeong Park, Ho-Yeon Go, Gahye Kim, Wonseok Cha, Jaeuk U. Kim
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-019-48488-4
Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: over 5 years ago