Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month

Papers Mentioning glmnet 1,607

10.3389/fnhum.2017.00140
EEG Error Prediction as a Solution for Combining the Advantages of Retrieval Practice and Errorless Learning
Cited by: 3
Author(s): Ellyn A. Riley, Dennis J. McFarland
Software Mentions: 2
Published: over 7 years ago
10.1186/s13148-016-0260-z
Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy
Cited by: 25
Author(s): Milan S. Geybels, Jonathan L. Wright, Marina Bibikova, Brandy Klotzle, Jie Fan, Shanshan Zhao, Ziding Feng, Elaine A. Ostrander, Daniel W. Lin, Peter S. Nelson, Janet L. Stanford
Software Mentions: 2
Published: about 8 years ago
10.3389/fimmu.2012.00320
From biomarkers to a clue of biology: a computation-aided perspective of immune gene expression profiles in human type 1 diabetes
Cited by: 6
Author(s): Dongmei Han, Xiaodong Cai, Ji Wen, Norma S. Kenyon, Zhibin Chen
Software Mentions: 2
Published: almost 13 years ago
10.3389/fimmu.2018.00257
Functional and Phenotypic Changes of Natural Killer Cells in Whole Blood during Mycobacterium tuberculosis Infection and Disease
Cited by: 36
Author(s): Mathieu Garand, Martin R. Goodier, Olumuyiwa Owolabi, Simon Donkor, Beate Kampmann, Jayne S. Sutherland
Software Mentions: 2
Published: almost 7 years ago
10.1186/s13148-021-01174-7
Investigating the DNA methylation profile of e-cigarette use
Cited by: 7
Author(s): Rebecca C Richmond, Carlos Sillero‐Rejon, Jasmine N Khouja, Claire Prince, Alexander G. Board, Gemma C Sharp, Matthew Suderman, Caroline L Relton, Marcus R. Munafò, Suzanne H. Gage
Software Mentions: 2
Published: about 3 years ago
10.1186/s13148-019-0730-1
Statistical predictions with glmnet
Cited by: 352
Author(s): Solveig Engebretsen, Jon Bohlin
Software Mentions: 2
Published: about 5 years ago
10.3390/cells8050456
CD4+/CD45RO+: A Potential Biomarker of the Clinical Response to Glatiramer Acetate
Cited by: 0
Author(s): Martin Vališ, Lukáš Sobíšek, Oldřich Vyšata, Blanka Klímová, Ctirad Andrýs, Doris Vokurková, J Masopust, Zbyšek Pavelek
Software Mentions: 2
Published: over 5 years ago
10.1186/s13075-019-1996-6
Pneumocystis pneumonia in patients with rheumatic diseases receiving prolonged, non-high-dose steroids—clinical implication of primary prophylaxis using trimethoprim–sulfamethoxazole
Cited by: 48
Author(s): Jung Won Park, Jeffrey R. Curtis, Min Jung Kim, Eun Bong Lee, Yeong Wook Song, Eun Bong Lee
Software Mentions: 2
Published: about 5 years ago
10.3389/fnint.2014.00064
Neuronal oscillations form parietal/frontal networks during contour integration
Cited by: 20
Author(s): Marta Castellano, Michael Plöchl, Raül Vicente, Gordon Pipa
Software Mentions: 2
Published: over 10 years ago
10.3389/fmed.2021.627416
Novel Multiparametric Nomogram for Overall Survival Prediction in Complicated Intra-Abdominal Infection: A Multicenter Study in China
Cited by: 1
Author(s): Sisi Huang, Limin Chen, Jiao Liu, Sheng Zhang, Lidi Zhang, Zhenliang Wen, Yizhu Chen, Dechang Chen
Software Mentions: 2
Published: over 3 years ago
10.3389/fmed.2021.705202
Association Between the Health Locus of Control and Medication Adherence: An Observational, Cross-Sectional Study in Primary Care
Cited by: 8
Author(s): Hanna-Maria E. Gerland, Tino Prell
Software Mentions: 2
Published: over 3 years ago
10.3390/cancers13030392
Radiomics Features of 18F-Fluorodeoxyglucose Positron-Emission Tomography as a Novel Prognostic Signature in Colorectal Cancer
Cited by: 9
Author(s): Jeonghyun Kang, Jae Hoon Lee, Hye Sun Lee, Eun Suk Cho, Eun Jung Park, Seung Hyuk Baik, Kang Young Lee, Chihyun Park, Yunku Yeu, Jean R. Clemenceau, Sunho Park, Hongming Xu, Changjin Hong, Tae Hyun Hwang
Software Mentions: 2
Published: almost 4 years ago
10.1177/2040206618762985
Frequent cross-resistance to rilpivirine among subtype C HIV-1 from first-line antiretroviral therapy failures in South Africa
Cited by: 5
Author(s): Kerri J. Penrose, Chanson J. Brumme, Maritsa Scoulos-Hanson, Kristen A. Hamanishi, Kelley C. Gordon, Raquel Viana, Carole L. Wallis, P. Richard Harrigan, John W. Mellors, Urvi M. Parikh
Software Mentions: 2
Published: almost 7 years ago
10.3389/fmed.2021.689871
Development of a Novel Simple Model to Predict Mortality in Patients With Systemic Lupus Erythematosus Admitted to the Intensive Care Unit
Cited by: 2
Author(s): Jin Guo, Zhen Huang, Mengling Huang, Yayi He, Bing Han, Ning Ma, Zujiang Yu, Shengyun Liu, Zhigang Ren
Software Mentions: 2
Published: over 3 years ago
10.3390/antiox10071043
Lipid Peroxidation Assessment in Preclinical Alzheimer Disease Diagnosis
Cited by: 12
Author(s): Carmen Peña-Bautista, Lourdes Álvarez-Sánchez, I. Ferrer, Marina López-Nogueroles, Antonio José Cañada-Martínez, Camille Oger, Jean‐Marie Galano, Thierry Durand, Miquel Baquero, Consuelo Cháfer-Pericás
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2018.03112
A Phylogeny-Regularized Sparse Regression Model for Predictive Modeling of Microbial Community Data
Cited by: 19
Author(s): Jian Xiao, Li Chen, Yue Yu, Xianyang Zhang, Jun Chen
Software Mentions: 2
Published: almost 6 years ago
10.3390/cancers12113471
Construction of a Novel Multigene Panel Potently Predicting Poor Prognosis in Patients with Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Xiaozeng Lin, Anil Kapoor, Yan Gu, Mathilda Jing Chow, Jingyi Peng, Pierre Major, Damu Tang
Software Mentions: 2
Published: almost 4 years ago
10.3390/cancers12061432
Association of a CT-Based Clinical and Radiomics Score of Non-Small Cell Lung Cancer (NSCLC) with Lymph Node Status and Overall Survival
Cited by: 32
Author(s): Francesca Botta, Sara Raimondi, Lisa Rinaldi, Federica Bellerba, Federica Corso, Vincenzo Bagnardi, Daniela Origgi, Rocco Minelli, Giovanna Pitoni, Francesco Petrella, Lorenzo Spaggiari, Alessio Giuseppe Morganti, Filippo Del Grande, Massimo Bellomi, Stefania Rizzo
Software Mentions: 2
Published: over 4 years ago
10.3390/cancers12082071
Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways
Cited by: 30
Author(s): Patrícia P. Reis, Sandra A. Drigo, Robson Francisco Carvalho, Rainer Marco López Lapa, Tainara F. Felix, Devalben Patel, Dangxiao Cheng, Melania Pintilie, Geoffrey Liu, Ming‐Sound Tsao
Software Mentions: 2
Published: over 4 years ago
10.3389/fmolb.2021.675193
A Novel Ferroptosis-Related Biomarker Signature to Predict Overall Survival of Esophageal Squamous Cell Carcinoma
Cited by: 22
Author(s): Jiahang Song, Liu Yan-hu, Xiang Gao, Xun Zhang, Wenda Yu, Qingguo Li
Software Mentions: 2
Published: over 3 years ago
10.1155/2019/9507193
Cloud-Based Brain Magnetic Resonance Image Segmentation and Parcellation System for Individualized Prediction of Cognitive Worsening
Cited by: 4
Author(s): Ryo Sakamoto, Christopher Marano, Michael I. Miller, Constantine G. Lyketsos, Yue Li, Susumu Mori, Kenichi Oishi, Alzheimer's Disease Neuroimaging Initiative ADNI
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0106985
Generalized Linear Model for Mapping Discrete Trait Loci Implemented with LASSO Algorithm
Cited by: 4
Author(s): Jun Xing, Huijiang Gao, Yang Wu, Yani Wu, Hongwang Li, Runqing Yang
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0132745
Pro-Inflammatory Cytokines Predict Relapse-Free Survival after One Month of Interferon-α but Not Observation in Intermediate Risk Melanoma Patients
Cited by: 9
Author(s): Ahmad A. Tarhini, Yan Lin, Haris Zahoor, Yongli Shuai, Lisa H. Butterfield, Steven Ringquist, Helen Gogas, Cindy Sander, Sandra Lee, Sanjiv S. Agarwala, John M. Kirwood
Software Mentions: 2
Published: over 9 years ago
10.18632/oncotarget.10975
The 3′UTR signature defines a highly metastatic subgroup of triple-negative breast cancer
Cited by: 25
Author(s): Lei Wang, Xin Hu, Peng Wang, Zhi Ming Shao
Software Mentions: 2
Published: over 8 years ago
10.1080/07853890.2020.1868564
Clinical and inflammatory features based machine learning model for fatal risk prediction of hospitalized COVID-19 patients: results from a retrospective cohort study
Cited by: 84
Author(s): Xin Guan, Bo Zhang, Ming Fu, Mengying Li, Yuan Xu, Yaowu Zhu, Jing Peng, Huan Guo, Yanjun Lu
Software Mentions: 2
Published: almost 4 years ago
10.1002/acn3.51016
Self‐reported rates of impulsivity in Parkinson’s Disease
Cited by: 9
Author(s): Megan Aumann, Adam Stark, Shelby Hughes, Ya Chen Lin, Hakmook Kang, Elise Bradley, David H. Zald, Daniel O. Claassen
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0183228
Metabolite patterns predicting sex and age in participants of the Karlsruhe Metabolomics and Nutrition (KarMeN) study
Cited by: 141
Author(s): M Rist, Alexander Röth, Lara Frommherz, Christoph H. Weinert, Ralf Krüger, Benedikt Merz, Diana Bunzel, Carina Mack, Björn Egert, Achim Bub, Benjamin Görling, Pavleta Tzvetkova, Burkhard Luy, Ingrid Hoffmann, Sabine E. Kulling, Bernhard Watzl
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0121295
Development and Validation of a Risk Score for Predicting Death after Pneumonectomy
Cited by: 7
Author(s): Seyer Safi, Axel Benner, Janos Walloschek, María Renner, Jan op den Winkel, Thomas Muley, Konstantina Storz, Hendrik Dienemann, Hans Hoffmann, Thomas Schneider
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0034157
Metabonomic Profiles Delineate the Effect of Traditional Chinese Medicine Sini Decoction on Myocardial Infarction in Rats
Cited by: 78
Author(s): Guangguo Tan, Wenting Liao, Xin Dong, Genjing Yang, Zhenyu Zhu, Wuhong Li, Yifeng Chai, Ziyang Lou
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0203133
The proteomic and metabolomic characterization of exercise-induced sweat for human performance monitoring: A pilot investigation
Cited by: 31
Author(s): Sean W. Harshman, Rhonda L. Pitsch, Zachary K Smith, Maegan L. O’Connor, Brian Geier, Anthony Qualley, Nicole M. Schaeublin, Molly Voelz Fischer, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0040922
Genetic Markers Enhance Coronary Risk Prediction in Men: The MORGAM Prospective Cohorts
Cited by: 83
Author(s): Maria Hughes, Olli Saarela, Jan Stritzke, Frank Kee, Kaisa Silander, Norman Klopp, Jukka Kontto, Juha Karvanen, Christina Willenborg, Veikko Salomaa, Jarmo Virtamo, Philippe Amouyel, Dominique Arveiler, Jean Ferrières, Per-Gunner Wiklund, Jens Baumert, Barbara Thorand, Patrick Diemert, David‐Alexandre Trégouët, Christian Hengstenberg, Annette Peters, Alun Evans, Wolfgang Köenig, Jeanette Erdmann, Nilesh J. Samani, Kari Kuulasmaa, Heribert Schunkert
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0009134
Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge
Cited by: 35
Author(s): Mika Gustafsson, Michael Hörnquist
Software Mentions: 2
Published: almost 15 years ago
10.1371/journal.pone.0029095
Phenotype Prediction Using Regularized Regression on Genetic Data in the DREAM5 Systems Genetics B Challenge
Cited by: 14
Author(s): Po‐Ru Loh, George Tucker, Bonnie Berger
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0145042
Comparison of Plasma and Urine Biomarker Performance in Acute Kidney Injury
Cited by: 70
Author(s): Gunnar Schley, Carmen Köberle, Ekaterina Manuilova, Sandra Rutz, Christian Förster, Michael Weyand, Ivan Formentini, Rosemarie Kientsch-Engel, Kai‐Uwe Eckardt, Carsten Willam
Software Mentions: 2
Published: almost 9 years ago
10.2196/22060
Association Between Public Knowledge About COVID-19, Trust in Information Sources, and Adherence to Social Distancing: Cross-Sectional Survey
Cited by: 156
Author(s): Ilona Fridman, Nicole Lucas, Debra Henke, Christina K. Zigler
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0188149
Characterization of rubella-specific humoral immunity following two doses of MMR vaccine using proteome microarray technology
Cited by: 6
Author(s): Iana H. Haralambieva, Michael J. Gibson, Richard B. Kennedy, Inna G. Ovsyannikova, Nathaniel D. Warner, Diane E. Grill, Gregory A. Poland
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0133627
Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging
Cited by: 87
Author(s): Chan C. Whiting, Janet Siebert, Aaron M. Newman, Hong Du, Ash A. Alizadeh, Jörg J. Goronzy, Cornelia M. Weyand, Eswar Krishnan, C. Garrison Fathman, Holden T. Maecker
Software Mentions: 2
Published: over 9 years ago
10.3389/fneur.2020.00248
Parkinson's Disease Diagnosis Using Neostriatum Radiomic Features Based on T2-Weighted Magnetic Resonance Imaging
Cited by: 21
Author(s): Panshi Liu, Han Wang, Shilei Zheng, Fan Zhang, Xianglin Zhang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0249916
Sparse Poisson regression via mixed-integer optimization
Cited by: 2
Author(s): Hiroki Saishu, Kiyoshi Kudo, Yasunari Takano
Software Mentions: 2
Published: over 3 years ago
10.18632/aging.102064
Integrated tumor stromal features of hepatocellular carcinoma reveals two distinct subtypes with prognostic/predictive significance
Cited by: 4
Author(s): Wei Li, Jun Han, Kefei Yuan, Hong Wu
Software Mentions: 2
Published: over 5 years ago
10.3389/fnins.2021.722231
The Corticospinal Excitability Can Be Predicted by Spontaneous Electroencephalography Oscillations
Cited by: 2
Author(s): Guiyuan Cai, Manfeng Wu, Qi Ding, Tuo Lin, Wanqi Li, Yinghua Jing, Hongying Chen, Huiting Cai, Ti‐Fei Yuan, Gelin Xu, Yue Lan
Software Mentions: 2
Published: about 3 years ago
10.3389/fnins.2016.00344
Bootstrap Enhanced Penalized Regression for Variable Selection with Neuroimaging Data
Cited by: 34
Author(s): Samantha V. Abram, Nathaniel E. Helwig, Craig Moodie, Colin G. DeYoung, Angus W. MacDonald, Niels G. Waller
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0178962
Explaining ethnic disparities in lung function among young adults: A pilot investigation
Cited by: 10
Author(s): Neil J. Saad, Jaymini Patel, Cosetta Minelli, Peter Burney
Software Mentions: 2
Published: over 7 years ago
10.3389/fnins.2017.00646
Local Fields in Human Subthalamic Nucleus Track the Lead-up to Impulsive Choices
Cited by: 12
Author(s): J. M. Pearson, Patrick Hickey, Shivanand P. Lad, Michael L. Platt, Dennis A. Turner
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0103322
Analyzing Genome-Wide Association Studies with an FDR Controlling Modification of the Bayesian Information Criterion
Cited by: 20
Author(s): Erich Dolejsi, Bernhard Bodenstorfer, Florian Frommlet
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0231609
Cytokine changes associated with the maternal immune activation (MIA) model of autism: A penalized regression approach
Cited by: 14
Author(s): Cristina Paraschivescu, Susana Barbosa, Thomas Lorivel, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 2
Published: over 4 years ago
10.3389/fnins.2012.00115
Discovery and replication of gene influences on brain structure using LASSO regression
Cited by: 89
Author(s): Omid Kohannim
Software Mentions: 2
Published: almost 13 years ago
10.3389/fnins.2018.01045
Dual-Model Radiomic Biomarkers Predict Development of Mild Cognitive Impairment Progression to Alzheimer’s Disease
Cited by: 39
Author(s): Hucheng Zhou, Jiehui Jiang, Jiaying Lu, Min Wang, Huiwei Zhang, Chuantao Zuo, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0193871
Radiogenomics analysis identifies correlations of digital mammography with clinical molecular signatures in breast cancer
Cited by: 13
Author(s): Jose-Gerardo Tamez-Peña, Juan-Andrés Rodriguez-Rojas, Hugo Gómez-Rueda, Jose-Maria Celaya-Padilla, Roxana-Alicia Rivera-Prieto, Rebeca Palacios-Corona, Margarita Garza-Montemayor, Servando Cardona‐Huerta, Víctor Treviño
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0068071
Bayesian Mixture Models for Assessment of Gene Differential Behaviour and Prediction of pCR through the Integration of Copy Number and Gene Expression Data
Cited by: 0
Author(s): Filippo Trentini, Yuan Ji, Takayuki Inomata, Yuan Qi, Lajos Pusztai, Peter Müller
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0065380
Effects of Sample Size on Differential Gene Expression, Rank Order and Prediction Accuracy of a Gene Signature
Cited by: 46
Author(s): Cynthia Stretch, Sumsullah Khan, Nasimeh Asgarian, Roman Eisner, Saman Vaisipour, Sambasivarao Damaraju, Kathryn Graham, Oliver F. Bathe, Helen Steed, Russell Greiner, Vickie E. Baracos
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0205333
Factors associated with common mental health problems of humanitarian workers in South Sudan
Cited by: 25
Author(s): Hannah Strohmeier, Willem F. Scholte, Alastair Ager
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0218134
Selection and co-selection of antibiotic resistances among Escherichia coli by antibiotic use in primary care: An ecological analysis
Cited by: 32
Author(s): Koen B Pouwels, Berit Müller‐Pebody, Timo Smieszek, Susan Hopkins, Julie V. Robotham
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0029653
Expression Signature of IFN/STAT1 Signaling Genes Predicts Poor Survival Outcome in Glioblastoma Multiforme in a Subtype-Specific Manner
Cited by: 109
Author(s): Christine W. Duarte, Christopher D. Willey, Degui Zhi, Xiangqin Cui, Jacqueline J. Harris, Laura K. Vaughan, Tapan Mehta, Raymond O. McCubrey, Nikolai N. Khodarev, Ralph R. Weichselbaum, G. Yancey Gillespie
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0110451
Discovering Main Genetic Interactions with LABNet LAsso-Based Network Inference
Cited by: 4
Author(s): Francesco Gadaleta, Kristel Van Steen
Software Mentions: 2
Published: about 10 years ago
10.3390/ijerph17239027
Interaction Effects of Air Pollution and Climatic Factors on Circulatory and Respiratory Mortality in Xi’an, China between 2014 and 2016
Cited by: 11
Author(s): Kingsley Katleho Mokoena, Crystal Jane Ethan, Yan Yu, Asenso Theophilus Quachie
Software Mentions: 2
Published: almost 4 years ago
10.2196/mhealth.9236
Development and Evaluation of a Mobile Personalized Blood Glucose Prediction System for Patients With Gestational Diabetes Mellitus
Cited by: 35
Author(s): Evgenii Pustozerov, Polina Popova, Aleksandra Tkachuk, Yana Bolotko, Z. M. Yuldashev, Elena Grineva
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0027683
Potential Biomarkers in Mouse Myocardium of Doxorubicin-Induced Cardiomyopathy: A Metabonomic Method and Its Application
Cited by: 59
Author(s): Guangguo Tan, Ziyang Lou, Wenting Liao, Zhenyu Zhu, Xin Dong, Wei Zhang, Wuhong Li, Yifeng Chai
Software Mentions: 2
Published: about 13 years ago
10.2196/16733
Prediction Model for Timing of Death in Potential Donors After Circulatory Death (DCD III): Protocol for a Multicenter Prospective Observational Cohort Study
Cited by: 3
Author(s): Angela M M Kotsopoulos, Piet Vos, Nichon Jansen, Ewald M. Bronkhorst, Johannes G. van der Hoeven, Wilson F. Abdo
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0146939
Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis
Cited by: 49
Author(s): Robert E. Tyx, Stephen B. Stanfill, Lisa M. Keong, Aidsa Rivera, Glen A. Satten, Clifford H. Watson
Software Mentions: 2
Published: almost 9 years ago
10.1186/s40425-016-0179-0
Validation of biomarkers to predict response to immunotherapy in cancer: Volume II — clinical validation and regulatory considerations
Cited by: 85
Author(s): Kevin K. Dobbin, Alessandra Cesano, John Alvarez, Rachael E. Hawtin, Sylvia Janetzki, Ilan R. Kirsch, Giuseppe Masucci, Paul B. Robbins, Senthamil R. Selvan, Howard Streicher, Jenny Zhang, Lisa H. Butterfield, Magdalena Thurin
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0148195
Fusing Data Mining, Machine Learning and Traditional Statistics to Detect Biomarkers Associated with Depression
Cited by: 56
Author(s): Joanna F. Dipnall, Julie A. Pasco, Michael Berk, Lana J. Williams, Seetal Dodd, Felice N. Jacka, Denny Meyer
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0227315
Radiomics signature for prediction of lateral lymph node metastasis in conventional papillary thyroid carcinoma
Cited by: 29
Author(s): Vivian Youngjean Park, Kyunghwa Han, Hye Jung Kim, Eun Jung Lee, Ji Hyun Youk, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0196038
Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots
Cited by: 2
Author(s): Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0213258
Exploring the use of machine learning for risk adjustment: A comparison of standard and penalized linear regression models in predicting health care costs in older adults
Cited by: 37
Author(s): Hong Kan, Hadi Kharrazi, Hsien Yen Chang, Dave Bodycombe, K Lemke, Jonathan P. Weiner
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0160715
Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests
Cited by: 85
Author(s): Philip Zylstra, Ross A. Bradstock, Michael Bedward, Trent D. Penman, Michael Doherty, R. O. Weber, A. Malcolm Gill, Geoffrey J. Cary
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0241083
Predicting overdose among individuals prescribed opioids using routinely collected healthcare utilization data
Cited by: 7
Author(s): Jenny W Sun, Jessica M. Franklin, Kathryn Rough, Rishi Desai, Sonia Hernández–Dı́az, Krista F. Huybrechts, Brian T. Bateman
Software Mentions: 2
Published: about 4 years ago
10.1186/s40425-019-0752-4
Development and validation of an immune checkpoint-based signature to predict prognosis in nasopharyngeal carcinoma using computational pathology analysis
Cited by: 40
Author(s): Yaqin Wang, Yu Zhang, Wei Jiang, Yu-Pei Chen, Shuoyu Xu, Na Liu, Yin Zhao, Li Li, Yuan Liu, Xiao-Hong Hong, Ye‐Lin Liang, Junyan Li, Lulu Zhang, Jing‐Ping Yun, Ying Sun, Ying‐Qin Li, Jun Ma
Software Mentions: 2
Published: about 5 years ago
10.1186/s13195-019-0502-3
Electrophysiological brain signatures for the classification of subjective cognitive decline: towards an individual detection in the preclinical stages of dementia
Cited by: 21
Author(s): David López‐Sanz, Ricardo Bruña, María Luisa Delgado-Losada, Ramón López-Higes, Alberto Marcos-Dolado, Fernando Maestú, Stefan Walter
Software Mentions: 2
Published: over 5 years ago
10.1186/s13195-018-0397-4
Alzheimer disease pathology and the cerebrospinal fluid proteome
Cited by: 61
Author(s): Loı̈c Dayon, Antonio Núñez Galindo, Jérôme Wojcik, Ornella Cominetti, John Corthésy, Aikaterini Oikonomidi, Hugues Henry, Martin Kussmann, Eugenia Migliavacca, India C. Severin, Gene L. Bowman, Julius Popp
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0250198
Characteristics of spirochetemic patients with a solitary erythema migrans skin lesion in Europe
Cited by: 3
Author(s): Vera Maraspin, Katarina Ogrinc, Tereza Rojko, Petra Bogovič, Eva Ružić‐Sabljić, Andrej Kastrin, Gary P. Wormser, Franc Strle
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0160733
Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data
Cited by: 31
Author(s): A. M. C. Chan, Martha T. Hamblin, Jean‐Luc Jannink
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0248746
Gene flow in commercial alfalfa (Medicago sativa subsp. sativa L.) seed production fields: Distance is the primary but not the sole influence on adventitious presence
Cited by: 6
Author(s): Sandya R. Kesoju, Matthew Kramer, Johanne Brunet, Stephanie L. Greene, Amelia Jordan, Ruth C. Martin
Software Mentions: 2
Published: over 3 years ago
10.3389/fnsys.2016.00025
A Probabilistic Approach to Receptive Field Mapping in the Frontal Eye Fields
Cited by: 6
Author(s): J. Patrick Mayo, Randall L. Morrison, Matthew A. Smith
Software Mentions: 2
Published: over 8 years ago
10.3389/fvets.2020.575795
Development of an Early Warning System for Owners Using a Validated Health-Related Quality of Life (HRQL) Instrument for Companion Animals and Its Use in a Large Cohort of Dogs
Cited by: 4
Author(s): Vinny Davies, Eileen Scott, M. Lesley Wiseman-Orr, Andrea Wright, J. Reid
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0072199
Measuring Visual Field Progression in the Central 10 Degrees Using Additional Information from Central 24 Degrees Visual Fields and ‘Lasso Regression’
Cited by: 17
Author(s): Ryo Asaoka
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0236957
A simple nomogram score for screening patients with type 2 diabetes to detect those with hypertension: A cross-sectional study based on a large community survey in China
Cited by: 7
Author(s): Mingyue Xue, Li Liu, Shuxia Wang, Yinxia Su, Kun Lv, Mingchen Zhang, Hua Yao
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0150744
A Cross-Sectional Study of Water, Sanitation, and Hygiene-Related Risk Factors for Soil-Transmitted Helminth Infection in Urban School- and Preschool-Aged Children in Kibera, Nairobi
Cited by: 47
Author(s): Caitlin M. Worrell, Ryan E. Wiegand, Stephanie M. Davis, Kennedy Odero, Anna J. Blackstock, Victoria M. Cuéllar, Sammy M. Njenga, Joel M. Montgomery, Sharon L. Roy, LeAnne M. Fox
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0062471
FDG PET and MRI in Logopenic Primary Progressive Aphasia versus Dementia of the Alzheimer’s Type
Cited by: 96
Author(s): Ajay A Madhavan, Jennifer L. Whitwell, Stephen D. Weigand, Joseph R. Duffy, Edythe A. Strand, Mary M. Machulda, Nirubol Tosakulwong, Matthew L. Senjem, Jeffrey L. Gunter, Val J. Lowe, Ronald C. Petersen, Clifford R. Jack, Keith A. Josephs
Software Mentions: 2
Published: over 11 years ago
10.18632/aging.101563
A new risk score based on twelve hepatocellular carcinoma-specific gene expression can predict the patients’ prognosis
Cited by: 18
Author(s): Ting Lin, Jingxian Gu, Kai Qu, Xing Zhang, Xiaojie Ma, Runchen Miao, Xiaohong Xiang, Yunong Fu, Wenquan Niu, Junjun She, Chang Liu
Software Mentions: 2
Published: about 6 years ago
10.1038/s41389-017-0015-5
Src-mediated regulation of the PI3K pathway in advanced papillary and anaplastic thyroid cancer
Cited by: 33
Author(s): Thomas C. Beadnell, Kelsey W. Nassar, Madison Rose, Erin G. Clark, Brian P. Danysh, Marie‐Claude Hofmann, Nikita Pozdeyev, Rebecca E. Schweppe
Software Mentions: 2
Published: over 6 years ago
10.3390/genes10060464
Integrative Analysis of Genomic and Clinical Data Reveals Intrinsic Characteristics of Bladder Urothelial Carcinoma Progression
Cited by: 7
Author(s): Bin Zhou, Rui Guo
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0123946
Developing a Prognostic Micro-RNA Signature for Human Cervical Carcinoma
Cited by: 31
Author(s): Christine How, Melania Pintilie, Jeff Bruce, Angela Bik‐Yu Hui, Blaise A. Clarke, Philip Wong, Shaoming Yin, Rui Yan, Daryl Waggott, Paul C. Boutros, Anthony Fyles, David W. Hedley, Richard P. Hill, Michael Milosevic, Fei‐Fei Liu
Software Mentions: 2
Published: over 9 years ago
10.1186/s13195-017-0270-x
One-carbon metabolism, cognitive impairment and CSF measures of Alzheimer pathology: homocysteine and beyond
Cited by: 46
Author(s): Loı̈c Dayon, Seu Ping Guiraud, John Corthésy, Laeticia Da Silva, Eugenia Migliavacca, Domilė Tautvydaitė, Aikaterini Oikonomidi, Barbara Moullet, Hugues Henry, Sylviane Métairon, Julien Marquis, Patrick Descombes, Sebastiano Collino, François-Pierre Martin, Ivan Montoliu, Martin Kussmann, Jérôme Wojcik, Gene L. Bowman, Julius Popp
Software Mentions: 2
Published: over 7 years ago
10.1002/gepi.21639
Reprioritizing Genetic Associations in Hit Regions Using LASSO‐Based Resample Model Averaging
Cited by: 24
Author(s): William Valdar, Jeremy A. Sabourin, Andrew B. Nobel, Connor Holmes
Software Mentions: 2
Published: over 12 years ago
10.1111/acel.13149
Determinants of accelerated metabolomic and epigenetic aging in a UK cohort
Cited by: 79
Author(s): Oliver Robinson, Marc Chadeau‐Hyam, Íbrahím Karaman, Rui Pinto, Mika Ala‐Korpela, Evangelos Handakas, Giovanni Fiorito, He Gao, Andy Heard, Marjo‐Riitta Järvelin, Matthew R. Lewis, Raha Pazoki, Silvia Polidoro, Ioanna Tzoulaki, Matthias Wielscher, Paul Elliott, Paolo Víneis
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0154313
Molecular Predictors of Long-Term Survival in Glioblastoma Multiforme Patients
Cited by: 39
Author(s): Jie Lü, Matthew C. Cowperthwaite, Mark G. Burnett, Max Shpak
Software Mentions: 2
Published: over 8 years ago
10.1186/gb-2014-15-1-r9
Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets
Cited by: 62
Author(s): Thalia A. Farazi, Jelle J. ten Hoeve, Miguel Brown, Aleksandra Mihailović, Hugo M. Horlings, Marc J. van de Vijver, Thomas Tuschl, Lodewyk Wessels
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0114885
Computational Pathology to Discriminate Benign from Malignant Intraductal Proliferations of the Breast
Cited by: 107
Author(s): Fei Dong, Humayun Irshad, Eunsun Oh, Melinda F. Lerwill, Elena F. Brachtel, Nicholas Jones, Nicholas W. Knoblauch, Laleh Montaser‐Kouhsari, Nicole B. Johnson, Luigi Rao, Beverly E. Faulkner-Jones, David C. Wilbur, Stuart J. Schnitt, Andrew H. Beck
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0238731
The interdependency structure in the Mexican stock exchange: A network approach
Cited by: 2
Author(s): Erick Treviño Aguilar
Software Mentions: 2
Published: about 4 years ago
10.1111/acel.12687
Age-associated microRNA expression in human peripheral blood is associated with all-cause mortality and age-related traits
Cited by: 104
Author(s): Tianxiao Huan, George Chen, Chunyu Liu, Anindya Bhattacharya, Jian Rong, Brian H. Chen, Sudha Seshadri, Kahraman Tanrıverdi, Jane E. Freedman, Martin G. Larson, Joanne M. Murabito, Daniel Levy
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0189508
Brain-to-brain hyperclassification reveals action-specific motor mapping of observed actions in humans
Cited by: 11
Author(s): Д. А. Смирнов, Fanny Lachat, Tomi Peltola, Juha M. Lahnakoski, Olli-Pekka Koistinen, Enrico Glerean, Aki Vehtari, Riitta Hari, Mikko Sams, Lauri Nummenmaa
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0141869
Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets
Cited by: 14
Author(s): Hee-Won Park, Seiya Imoto, Satoru Miyano
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0189181
DNA methylation levels in candidate genes associated with chronological age in mammals are not conserved in a long-lived seabird
Cited by: 6
Author(s): Ricardo De Paoli-Iseppi, Andrea M. Polanowski, Clive R. McMahon, Bruce E. Deagle, Joanne L. Dickinson, Mark A. Hindell, Simon Jarman
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0106664
Detecting Gunshots Using Wearable Accelerometers
Cited by: 12
Author(s): Charles Loeffler
Software Mentions: 2
Published: about 10 years ago
10.5808/GI.2019.17.4.e47
Pure additive contribution of genetic variants to a risk prediction model using propensity score matching: application to type 2 diabetes
Cited by: 1
Author(s): Chanwoo Park, Nan Jiang, Taesung Park
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.gpb.2019.09.002
Identification of Cognitive Dysfunction in Patients with T2DM Using Whole Brain Functional Connectivity
Cited by: 10
Author(s): Zhenyu Liu, Jiangang Liu, Huijuan Yuan, Taiyuan Liu, Xingwei Cui, Zhenchao Tang, Yang Du, Meiyun Wang, Yusong Lin, Jie Tian
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pntd.0005295
Forecasting Zika Incidence in the 2016 Latin America Outbreak Combining Traditional Disease Surveillance with Search, Social Media, and News Report Data
Cited by: 151
Author(s): Sarah F. McGough, John S. Brownstein, Joseph E. Hawkins, Mauricio Santillana
Software Mentions: 2
Published: almost 8 years ago
10.1016/j.addbeh.2018.02.017
Problematic internet use as an age-related multifaceted problem: Evidence from a two-site survey
Cited by: 124
Author(s): Konstantinos Ioannidis, Matthias S. Treder, Samuel R. Chamberlain, Franz J. Király, Sarah A. Redden, Dan J. Stein, Christine Löchner, Jon E. Grant
Software Mentions: 2
Published: over 6 years ago
10.1111/acel.13256
Data mining of human plasma proteins generates a multitude of highly predictive aging clocks that reflect different aspects of aging
Cited by: 47
Author(s): Benoit Lehallier, Maxim N. Shokhirev, Tony Wyss‐Coray, Adiv A. Johnson
Software Mentions: 2
Published: about 4 years ago