cran: glmnet | Projects | Ecosyste.ms: Papers

10.1371/journal.pmed.1001743

Association of Medical Students' Reports of Interactions with the Pharmaceutical and Medical Device Industries and Medical School Policies and Characteristics: A Cross-Sectional Study
Cited by: 11
Author(s): James S. Yeh, Kirsten Austad, Jessica M. Franklin, Susan Chimonas, Eric G. Campbell, Jerry Avorn, Aaron S. Kesselheim
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep34000

Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer
Cited by: 7
Author(s): Chao Liu, Florian Rohart, Peter T. Simpson, Kum Kum Khanna, Mark A. Ragan, Kim‐Anh Lê Cao
Software Mentions: 2
Published: about 10 years ago

10.1038/srep34689

Sleep duration, daytime napping, markers of obstructive sleep apnea and stroke in a population of southern China
Cited by: 18
Author(s): Yan Wen, Fuhua Pi, Pi Guo, Wenchen Dong, Yuqing Xie, Xiangyu Wang, Fang-Fang Xia, Shaojie Pang, Yanchun Wu, Yuan‐Yuan Wang, Qingying Zhang
Software Mentions: 2
Published: about 10 years ago

10.1038/srep34921

Effects of contrast-enhancement, reconstruction slice thickness and convolution kernel on the diagnostic performance of radiomics signature in solitary pulmonary nodule
Cited by: 189
Author(s): Lan He, Yanqi Huang, Zhanjun Ma, Chun-Ling Liang, Changhong Liang, Zaiyi Liu
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pmed.1002108

Pancreatic Cancer Surgical Resection Margins: Molecular Assessment by Mass Spectrometry Imaging
Cited by: 74
Author(s): Lívia S. Eberlin, Katherine Margulis, Planell-Mendez Ivette, Richard N. Zare, Robert Tibshirani, Teri A. Longacre, Mehdi Jalali, Jeffrey A. Norton, George A. Poultsides
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pgen.1005147

Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control
Cited by: 59
Author(s): Ophir Shalem, Eilon Sharon, Shai Lubliner, Ifat Regev, Maya Lotan-Pompan, Zohar Yakhini, Eran Segal
Software Mentions: 2
Published: over 11 years ago

10.1007/s10461-016-1404-z

Predictors of Infant Age at Enrollment in Early Infant Diagnosis Services in Kenya
Cited by: 27
Author(s): Kathy Goggin, Catherine Wexler, Niaman Nazir, Vincent S. Staggs, Brad Gautney, Vincent Okoth, Samoel Khamadi, Andrea Ruff, Michael D. Sweat, An Lin Cheng, Sarah Finocchario-Kessler
Software Mentions: 2
Published: over 10 years ago

10.1186/s13075-019-1996-6

Pneumocystis pneumonia in patients with rheumatic diseases receiving prolonged, non-high-dose steroids—clinical implication of primary prophylaxis using trimethoprim–sulfamethoxazole
Cited by: 48
Author(s): Jung Won Park, Jeffrey R. Curtis, Min Jung Kim, Eun Bong Lee, Yeong Wook Song, Eun Bong Lee
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pcbi.1006618

A dynamic network model of temporal receptive fields in primary auditory cortex
Cited by: 17
Author(s): Monzilur Rahman, Ben D. B. Willmore, Andrew J. King, Nicol S. Harper
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07009-x

Ecological Network Inference From Long-Term Presence-Absence Data
Cited by: 46
Author(s): Elizabeth L. Sander, J. Timothy Wootton, Stefano Allesina
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pcbi.1005113

Network Receptive Field Modeling Reveals Extensive Integration and Multi-feature Selectivity in Auditory Cortical Neurons
Cited by: 56
Author(s): Nicol S. Harper, Oliver Schoppe, Ben D. B. Willmore, Zhanfeng Cui, Jan W. H. Schnupp, Andrew King
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pcbi.1005887

Complete hazard ranking to analyze right-censored data: An ALS survival study
Cited by: 23
Author(s): Zhengnan Huang, Hongjiu Zhang, Jonathan Boss, Stephen A. Goutman, Bhramar Mukherjee, Ivo D. Dinov, Yuanfang Guan
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pcbi.1004856

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System
Cited by: 8
Author(s): Yael Steuerman, Irit Gat‐Viks
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-017-15888-3

Detecting the relevance to performance of whole-body movements
Cited by: 10
Author(s): Daisuke Furuki, Ken Takiyama
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pcbi.1001014

Gene Expression Network Reconstruction by Convex Feature Selection when Incorporating Genetic Perturbations
Cited by: 67
Author(s): Benjamin A. Logsdon, Jason G. Mezey
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pbio.3000882

Independent representations of self-motion and object location in barrel cortex output
Cited by: 7
Author(s): Jonathan Andrew Cheung, Phillip Maire, Jin-Ho Kim, Kiana Lee, Garrett Flynn, Samuel Andrew Hires
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.8245

Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas
Cited by: 9
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.10297

Gene signature for prognosis in comparison of pancreatic cancer patients with diabetes and non-diabetes
Cited by: 0
Author(s): Mingjun Yang, Boni Song, Juxiang Liu, Zhitong Bing, Yangang Wang, Linmiao Yu
Software Mentions: 2
Published: almost 6 years ago

10.1177/2040206618762985

Frequent cross-resistance to rilpivirine among subtype C HIV-1 from first-line antiretroviral therapy failures in South Africa
Cited by: 5
Author(s): Kerri J. Penrose, Chanson J. Brumme, Maritsa Scoulos-Hanson, Kristen A. Hamanishi, Kelley C. Gordon, Raquel Viana, Carole L. Wallis, P. Richard Harrigan, John W. Mellors, Urvi M. Parikh
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.6781

Assessment on latitudinal tree species richness using environmental factors in the southeastern United States
Cited by: 7
Author(s): Youngsang Kwon, Taesoo Lee, Alison Lang, Dorian J. Burnette
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.2721

A methodology for the design of experiments in computational intelligence with multiple regression models
Cited by: 23
Author(s): Carlos Fernández-Lozano, Marcos Gestal, Cristian R. Munteanu, Julián Dorado, Alejandro Pazos
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-018-27563-2

Author Correction: Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 1
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 2
Published: over 8 years ago

10.12688/wellcomeopenres.15583.1

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
Cited by: 6
Author(s): Jan Kokko, Ulpu Remes, Owen Thomas, Henri Pesonen, Jukka Corander
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-28805-z

Predicting global tuna vulnerabilities with spatial, economic, biological and climatic considerations
Cited by: 9
Author(s): Alex Tidd, Julia L. Blanchard, Laurence T. Kell, Reg Watson
Software Mentions: 2
Published: about 8 years ago

10.15252/msb.202110426

Machine learning identifies molecular regulators and therapeutics for targeting SARS‐CoV2‐induced cytokine release
Cited by: 12
Author(s): Marina Chan, Siddharth Vijay, John McNevin, M. Juliana McElrath, Eric C. Holland, Taranjit S. Gujral
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-35277-8

The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain
Cited by: 17
Author(s): Sunit Mandad, Raza-Ur Rahman, Tonatiuh Peña Centeno, Ramón Vidal, Hanna Wildhagen, Burkhard Rammner, Sarva Keihani, Felipe Opazo, Inga Urban, Till Ischebeck, Koray Kırlı, Eva Benito, André Fischer, Roya Yousefi, Sven Dennerlein, Peter Rehling, Ivo Feußner, Henning Urlaub, Stefan Bonn, Silvio O. Rizzoli, Eugenio F. Fornasiero
Software Mentions: 2
Published: almost 8 years ago

10.3390/antiox10071043

Lipid Peroxidation Assessment in Preclinical Alzheimer Disease Diagnosis
Cited by: 12
Author(s): Carmen Peña-Bautista, Lourdes Álvarez-Sánchez, I. Ferrer, Marina López-Nogueroles, Antonio José Cañada-Martínez, Camille Oger, Jean‐Marie Galano, Thierry Durand, Miquel Baquero, Consuelo Cháfer-Pericás
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-36168-8

Genomic and regulatory characteristics of significant transcription factors in colorectal cancer metastasis
Cited by: 18
Author(s): Bin Zhou, Rui Guo
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41380-020-0668-x

DNA methylation signature on phosphatidylethanol, not on self-reported alcohol consumption, predicts hazardous alcohol consumption in two distinct populations
Cited by: 19
Author(s): Xiaoyu Liang, Amy C. Justice, Kaku So‐Armah, John H. Krystal, Rajita Sinha, Ke Xu
Software Mentions: 2
Published: over 6 years ago

10.1002/1878-0261.12350

A fine‐needle aspiration‐based protein signature discriminates benign from malignant breast lesions
Cited by: 11
Author(s): Bo Franzén, Masood Kamali‐Moghaddam, Andrey Alexeyenko, Thomas Hatschek, Susanne Becker, Lotta Wik, Jonas Kierkegaard, Å. Eriksson, Naveen Reddy Muppani, Gert Auer, Ulf Landegren, Rolf Lewensohn
Software Mentions: 2
Published: about 8 years ago

10.1080/07853890.2020.1868564

Clinical and inflammatory features based machine learning model for fatal risk prediction of hospitalized COVID-19 patients: results from a retrospective cohort study
Cited by: 84
Author(s): Xin Guan, Bo Zhang, Ming Fu, Mengying Li, Yuan Xu, Yaowu Zhu, Jing Peng, Huan Guo, Yanjun Lu
Software Mentions: 2
Published: almost 6 years ago

10.1002/1878-0261.12359

Construction of a set of novel and robust gene expression signatures predicting prostate cancer recurrence
Cited by: 19
Author(s): Yanzhi Jiang, Wenjuan Mei, Yan Gu, Xiaozeng Lin, Lizhi He, Hui Zeng, Fengxiang Wei, Xinhong Wan, Huixiang Yang, Pierre Major, Damu Tang
Software Mentions: 2
Published: about 8 years ago

10.1128/MCB.00125-17

Long Noncoding RNA JHDM1D-AS1 Promotes Tumor Growth by Regulating Angiogenesis in Response to Nutrient Starvation
Cited by: 36
Author(s): Ayano Kondo, Aya Nonaka, Teppei Shimamura, Shozo Yamamoto, Tatsushi Yoshida, Tatsuhiko Kodama, Hiroyuki Aburatani, Tsuyoshi Osawa
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-39800-3

Wrist morphology reveals substantial locomotor diversity among early catarrhines: an analysis of capitates from the early Miocene of Tinderet (Kenya)
Cited by: 5
Author(s): Craig Wuthrich, Laura MacLatchy, Isaiah Nengo
Software Mentions: 2
Published: over 7 years ago

10.1186/s13229-019-0307-z

Persistence and predictors of self-injurious behaviour in autism: a ten-year prospective cohort study
Cited by: 23
Author(s): Catherine Laverty, Chris Oliver, Joanna Moss, Lisa Nelson, Caroline Richards
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms7030079

Multi-Level Model to Predict Antibody Response to Influenza Vaccine Using Gene Expression Interaction Network Feature Selection
Cited by: 11
Author(s): Saeid Parvandeh, G. A. Poland, Richard B. Kennedy, Brett A. McKinney
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo10030096

Metabolomics to Exploit the Primed Immune System of Tomato Fruit
Cited by: 23
Author(s): Estrella Luna, Amélie Flandin, Cédric Cassan, Sylvain Prigent, Chloé Chevanne, Camélia Feyrouse Kadiri, Yves Gibon, Pierre Pétriacq
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-45906-5

Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes
Cited by: 28
Author(s): Klev Diamanti, Marco Cavalli, Gang Pan, Maria J. Pereira, Chanchal Kumar, Stanko Skrtic, Manfred Grabherr, Ulf Risérus, Jan W. Eriksson, Jan Komorowski, Claes Wadelius
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo11020082

Metabolic Predictors of Equine Performance in Endurance Racing
Cited by: 3
Author(s): Anna Halama, João Miguel Oliveira, Silvio A. Filho, Muhammad Qasim, Iman W Achkar, Sarah Johnson, Karsten Suhre, Tatiana Vinardell
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46873-7

Approaching Higher Dimension Imaging Data Using Cluster-Based Hierarchical Modeling in Patients with Heart Failure Preserved Ejection Fraction
Cited by: 5
Author(s): Yukari Kobayashi, Maxime Tremblay-Gravel, Kalyani Boralkar, Xiao Li, Tomoko Nishi, Myriam Amsallem, Kegan Moneghetti, Sara Bouajila, Mona Selej, Mehmet Özgün Özen, Utkan Demirci, Euan A. Ashley, Matthew T. Wheeler, Kirk U. Knowlton, Tatiana Kouznetsova, François Haddad
Software Mentions: 2
Published: about 7 years ago

10.3390/metabo7030032

Development and Validation of a High-Throughput Mass Spectrometry Based Urine Metabolomic Test for the Detection of Colonic Adenomatous Polyps
Cited by: 29
Author(s): Lu Deng, David D. Chang, Rae Foshaug, Roman Eisner, Victor Tso, David S. Wishart, Richard N. Fedorak
Software Mentions: 2
Published: over 9 years ago

10.1007/s11517-018-1831-2

Wavelet-promoted sparsity for non-invasive reconstruction of electrical activity of the heart
Cited by: 11
Author(s): Matthijs Cluitmans, Joël Karel, Pietro Bonizzi, Paul G.A. Volders, Ronald L. Westra, Ronald Peeters
Software Mentions: 2
Published: over 8 years ago

10.1186/s40644-021-00387-6

A CT-based radiomics nomogram for distinguishing between benign and malignant bone tumours
Cited by: 17
Author(s): Wei Sun, Shunli Liu, Jia Guo, Song Liu, Dapeng Hao, Feng Hou, Hexiang Wang, Wenjian Xu
Software Mentions: 2
Published: over 5 years ago

10.1186/s40644-021-00400-y

Are radiomics features universally applicable to different organs?
Cited by: 5
Author(s): Seung-Hak Lee, H. Cho, Junmo Kwon, Ho Yun Lee, Hyunjin Park
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-50254-5

Perceptual and conceptual processing of visual objects across the adult lifespan
Cited by: 20
Author(s): Rose Bruffaerts, Lorraine K. Tyler, Meredith A. Shafto, Kamen A. Tsvetanov, Alex Clarke
Software Mentions: 2
Published: about 7 years ago

10.1186/s12935-021-02146-w

Identification of a robust signature for clinical outcomes and immunotherapy response in gastric cancer: based on N6-methyladenosine related long noncoding RNAs
Cited by: 14
Author(s): Tenghui Han, Dong Xu, Zhu Jun, Jipeng Li, Lei Liu, Yanchun Deng
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51853-y

Molecular Imaging of Endometriosis Tissues using Desorption Electrospray Ionization Mass Spectrometry
Cited by: 18
Author(s): Clara L. Feider, Spencer Woody, Suzanne Ledet, Jialing Zhang, Katherine R. Sebastian, Michael T. Breen, Lívia S. Eberlin
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12935-020-01191-1

Overexpression of kinesin superfamily members as prognostic biomarkers of breast cancer
Cited by: 60
Author(s): Tianfu Li, Huijuan Zeng, Shan Zhang, Run-Yi Ye, Tuck−Yun Cheang, Yunjian Zhang, Si-Hong Lu, Qi Zhang, Nan Shao, Ying Lin
Software Mentions: 2
Published: over 6 years ago

10.1002/acn3.51016

Self‐reported rates of impulsivity in Parkinson’s Disease
Cited by: 9
Author(s): Megan Aumann, Adam Stark, Shelby Hughes, Ya Chen Lin, Hakmook Kang, Elise Bradley, David H. Zald, Daniel O. Claassen
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/9926704

Predictors of Successful Yttrium-90 Radioembolization Bridging or Downstaging in Patients with Hepatocellular Carcinoma
Cited by: 2
Author(s): Alexander Villalobos, W. Wagstaff, Mengzhou Guo, James Zhang, Zachary L. Bercu, Morgan Whitmore, M. Cristescu, Bill S. Majdalany, Joel Wedd, Mehmet Akce, Joseph F. Magliocca, Nima Kokabi
Software Mentions: 2
Published: about 5 years ago

10.1590/1414-431X2020e10612

Prognostic implications of immune-related eight-gene signature in pediatric brain tumors
Cited by: 6
Author(s): Yi Wang, Chuan Zhou, Huan Luo, Jing Cao, Chi Ma, Lulu Cheng, Yang Yang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-54513-3

Bevacizumab for the treatment of non-small cell lung cancer patients with synchronous brain metastases
Cited by: 12
Author(s): Mustafa Ascha, Jacqueline Wang, Priya Kumthekar, Andrew E. Sloan, Carol Kruchko, Jill S. Barnholtz‐Sloan
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00429-017-1414-2

Risk and protective factors for structural brain ageing in the eighth decade of life
Cited by: 36
Author(s): Stuart J. Ritchie, Elliot M. Tucker‐Drob, Simon R. Cox, David Alexander Dickie, María del C. Valdés Hernández, Janie Corley, Natalie A. Royle, Paul Redmond, Susana Muñoz Maniega, Alison Pattie, Benjamin S. Aribisala, Adele M. Taylor, Toni‐Kim Clarke, Alan J. Gow, John M. Starr, Mark E. Bastin, Joanna M. Wardlaw, Ian J. Deary
Software Mentions: 2
Published: over 9 years ago

10.1038/s41416-018-0200-0

Identification of beta-arrestin-1 as a diagnostic biomarker in lung cancer
Cited by: 11
Author(s): Victoria El-Khoury, Mélanie Béland, Anna Schritz, Sang Yoon Kim, Petr V. Nazarov, Louis Gaboury, Katriina Sertamo, François Bernardin, Roxane Batutu, Laurent Antunes, Catherine W Bennett, François Faÿs, Guy Berchem, Yeoun Jin Kim
Software Mentions: 2
Published: about 8 years ago

10.1093/biostatistics/kxy035

The joint lasso: high-dimensional regression for group structured data
Cited by: 21
Author(s): Frank Dondelinger, Sach Mukherjee
Software Mentions: 2
Published: about 8 years ago

10.3390/biomedicines9030281

Diagnostic Value of Conventional PET Parameters and Radiomic Features Extracted from 18F-FDG-PET/CT for Histologic Subtype Classification and Characterization of Lung Neuroendocrine Neoplasms
Cited by: 10
Author(s): Philippe Thuillier, Virginia Liberini, Osvaldo Rampado, E. Gallio, Bruno De Santi, Francesco Ceci, Jasna Metović, Mauro Papotti, Marco Volante, Filippo Molinari, Désirèe Deandreis
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-57974-z

ISOGO: Functional annotation of protein-coding splice variants
Cited by: 5
Author(s): Juan A Ferrer-Bonsoms, Ignacio Cassol, Pablo Fernández-Acín, Carlos Castilla, Fernando Carazo, Ángel Rubio
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/9078603

Differentiation of Pelvic Osteosarcoma and Ewing Sarcoma Using Radiomic Analysis Based on T2-Weighted Images and Contrast-Enhanced T1-Weighted Images
Cited by: 13
Author(s): Yi Dai, Ping Yin, Ning Mao, Chao Sun, Jiangfen Wu, Guangming Cheng, Nan Hong
Software Mentions: 2
Published: over 6 years ago

10.3390/biology10050375

Identification of an 11-Autophagy-Related-Gene Signature as Promising Prognostic Biomarker for Bladder Cancer Patients
Cited by: 6
Author(s): Chunhui Zhou, Alex Heng Li, Shan Liu, Hong Sun
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-019-1964-6

Identification and validation of an immune cell infiltrating score predicting survival in patients with lung adenocarcinoma
Cited by: 37
Author(s): Xiaodong Yang, Yu Shi, Ming Li, Tao Lu, Junjie Xi, Lin Zhang, Wei Jiang, Wei Guo, Cheng Zhan, Qun Wang
Software Mentions: 2
Published: about 7 years ago

10.1186/s13040-018-0162-z

Identification of influential observations in high-dimensional cancer survival data through the rank product test
Cited by: 10
Author(s): Eunice Carrasquinha, André Veríssimo, Marta B. Lopes, Susana Vinga
Software Mentions: 2
Published: over 8 years ago

10.1186/s13040-017-0159-z

Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data
Cited by: 11
Author(s): Zhenqiu Liu, Fengzhu Sun, Dermot P. McGovern
Software Mentions: 2
Published: almost 9 years ago

10.1136/bmjopen-2020-045780

Changes of perceptions and behaviours during the phases of COVID-19 pandemic in German elderly people with neurological disorders: an observational study using telephone interviews
Cited by: 3
Author(s): Hannah M. Zipprich, Aline Schönenberg, Ulrike Teschner, Tino Prell
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.101563

A new risk score based on twelve hepatocellular carcinoma-specific gene expression can predict the patients’ prognosis
Cited by: 18
Author(s): Ting Lin, Jingxian Gu, Kai Qu, Xing Zhang, Xiaojie Ma, Runchen Miao, Xiaohong Xiang, Yunong Fu, Wenquan Niu, Junjun She, Chang Liu
Software Mentions: 2
Published: about 8 years ago

10.1186/s12917-020-02352-0

MRI perfusion analysis using freeware, standard imaging software
Cited by: 1
Author(s): Antje Hartmann, Volkher B. Scholz, Ines E. Lautenschläger
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-68143-7

Plasma proteomics reveals markers of metabolic stress in HIV infected children with severe acute malnutrition
Cited by: 6
Author(s): Gerard Bryan Gonzales, James M. Njunge, Bonface M. Gichuki, Bijun Wen, Isabel Potani, Wieger Voskuijl, Robert Bandsma, James A. Berkley
Software Mentions: 2
Published: about 6 years ago

10.1186/1752-0509-8-S1-S6

Identifying disease associated genes by network propagation
Cited by: 26
Author(s): Yu Qian, Søren Besenbacher, Thomas Mailund, Mikkel H. Schierup
Software Mentions: 2
Published: almost 13 years ago

10.1186/s13195-019-0502-3

Electrophysiological brain signatures for the classification of subjective cognitive decline: towards an individual detection in the preclinical stages of dementia
Cited by: 21
Author(s): David López‐Sanz, Ricardo Bruña, María Luisa Delgado-Losada, Ramón López-Higes, Alberto Marcos-Dolado, Fernando Maestú, Stefan Walter
Software Mentions: 2
Published: over 7 years ago

10.1186/s12918-016-0260-9

Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity
Cited by: 23
Author(s): Ana B. Pavel, Dmitriy Sonkin, Anupama Reddy
Software Mentions: 2
Published: over 10 years ago

10.1186/s12890-019-0782-1

Development and validation of a simple-to-use clinical nomogram for predicting obstructive sleep apnea
Cited by: 30
Author(s): Huajun Xu, Xiaolong Zhao, Yue Shi, Xinyi Li, Yingjun Qian, Jian Zou, Hongliang Yi, Huizhen Huang, Jian Guan, Shankai Yin
Software Mentions: 2
Published: over 7 years ago

10.1186/s12889-016-3239-y

Factors associated with performing tuberculosis screening of HIV-positive patients in Ghana: LASSO-based predictor selection in a large public health data set
Cited by: 28
Author(s): Susanne Mueller‐Using, Torsten Feldt, Fred Stephen Sarfo, Kirsten Alexandra Eberhardt
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-020-71979-8

The combined effect of obesity and aging on human sperm DNA methylation signatures: inclusion of BMI in the paternal germ line age prediction model
Cited by: 7
Author(s): Albert Salas‐Huetos, Emma James, Dallin S. Broberg, Kenneth I. Aston, Douglas T. Carrell, Timothy G. Jenkins
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70542-9

2D and 3D convolutional neural networks for outcome modelling of locally advanced head and neck squamous cell carcinoma
Cited by: 29
Author(s): Sebastian Starke, Stefan Leger, Alex Zwanenburg, Karoline Leger, Fabian Lohaus, Annett Linge, Andreas Schreiber, Goda Kalinauskaitė, Ingeborg Tinhofer, Nika Guberina, Maja Guberina, Panagiotis Balermpas, Jens von der Grün, Ute Ganswindt, Claus Belka, Jan C. Peeken, Stephanie E. Combs, Simon Boeke, Daniel Zips, Christian Richter, Esther G.C. Troost, Mechthild Krause, Michaël Baumann, Steffen Löck
Software Mentions: 2
Published: about 6 years ago

10.1186/1753-6561-5-S9-S24

LASSO model selection with post-processing for a genome-wide association study data set
Cited by: 6
Author(s): Allan Motyer, Chris McKendry, Sally Galbraith, Susan R. Wilson
Software Mentions: 2
Published: almost 15 years ago

10.1186/1753-6561-5-S9-S113

Comparison of statistical approaches to rare variant analysis for quantitative traits
Cited by: 9
Author(s): Han Chen, Audrey E. Hendricks, Yansong Cheng, L. Adrienne Cupples, Josée Dupuis, Ching‐Ti Liu
Software Mentions: 2
Published: almost 15 years ago

10.1186/1753-6561-5-S9-S69

Using LASSO regression to detect predictive aggregate effects in genetic studies
Cited by: 14
Author(s): Joel Fontanarosa, Yang Dai
Software Mentions: 2
Published: almost 15 years ago

10.1186/1753-6561-6-S2-S10

Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions
Cited by: 228
Author(s): Joseph O. Ogutu, Torben Schulz-Streeck, Hans‐Peter Piepho
Software Mentions: 2
Published: over 14 years ago

10.1186/s12883-021-02226-4

Accelerating diagnosis of Parkinson’s disease through risk prediction
Cited by: 13
Author(s): William Yuan, Brett K. Beaulieu‐Jones, Richard C. Krolewski, Nathan Palmer, Christine Veyrat‐Follet, Francesca Frau, Caroline Cohen, Sylvie Bozzi, Meaghan Cogswell, Dinesh Kumar, Catherine Coulouvrat, Bruno Leroy, Tanya Fischer, S. Pablo Sardi, Karen J. Chandross, Lee L. Rubin, Anne‐Marie Wills, Isaac S. Kohane, Scott Lipnick
Software Mentions: 2
Published: over 5 years ago

10.1186/s12874-021-01297-8

Classification of PR-positive and PR-negative subtypes in ER-positive and HER2-negative breast cancers based on pathway scores
Cited by: 7
Author(s): Taobo Hu, Yan Chen, Yiqiang Liu, Danhua Zhang, Jiankang Pan, Mengping Long
Software Mentions: 2
Published: over 5 years ago

10.1186/s12874-019-0848-z

A comparison of machine learning techniques for classification of HIV patients with antiretroviral therapy-induced mitochondrial toxicity from those without mitochondrial toxicity
Cited by: 11
Author(s): Jong Soo Lee, Elijah Paintsil, Vivek Gopalakrishnan, Musie Ghebremichael
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-78338-7

Radiomic features based on Hessian index for prediction of prognosis in head-and-neck cancer patients
Cited by: 7
Author(s): Quoc Cuong Le, Hidetaka Arimura, Kenta Ninomiya, Yutaro Kabata
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-78681-9

Prediction of breast cancer molecular subtypes using radiomics signatures of synthetic mammography from digital breast tomosynthesis
Cited by: 23
Author(s): Jinwoo Son, Si Eun Lee, Min Jung Kim, Sung-Won Kim
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12874-020-01058-z

Directed acyclic graphs and causal thinking in clinical risk prediction modeling
Cited by: 40
Author(s): Marco Piccininni, Stefan Konigorski, Jessica L. Rohmann, Tobias Kurth
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-79509-2

Targeted methods for epigenetic age predictions in mice
Cited by: 12
Author(s): Yang Han, Miloš Nikolić, Michael Gobs, Julia Franzen, Gerald de Haan, Hartmut Geiger, Wolfgang Wagner
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-79317-8

Model selection for inferential models with high dimensional data: synthesis and graphical representation of multiple techniques
Cited by: 9
Author(s): Eliana Martins Lima, Robert Hyde, Martin A. Green
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-018-0451-x

A robust fuzzy rule based integrative feature selection strategy for gene expression data in TCGA
Cited by: 4
Author(s): Shicai Fan, Jie Tang, Qi Tian, Chunguo Wu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12920-020-0706-1

Identification of miRNA-mRNA associations in hepatocellular carcinoma using hierarchical integrative model
Cited by: 6
Author(s): Rency S. Varghese, Yuan Zhou, Megan E. Barefoot, Yifan Chen, Cristina Di Poto, Abdalla Kara Balla, Everett Oliver, Zaki A. Sherif, Deepak Kumar, Alexander Kroemer, Mahlet G. Tadesse, Habtom W. Ressom
Software Mentions: 2
Published: over 6 years ago

10.1186/1755-8794-5-10

DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease?
Cited by: 85
Author(s): Nahid Turan, Mohamed Ghalwash, Sunita Katari, Christos Coutifaris, Zoran Obradović, Carmen Sapienza
Software Mentions: 2
Published: over 14 years ago

10.1186/s12879-021-06510-z

Evaluation of the added value of viral genomic information for predicting severity of influenza infection
Cited by: 3
Author(s): Nina Van Goethem, Annie Robert, Nathalie Bossuyt, Laura A. E. Van Poelvoorde, Sophie Quoilin, Sigrid C. J. De Keersmaecker, Brecht Devleesschauwer, Isabelle Thomas, Kevin Vanneste, Nancy Roosens, Herman Van Oyen
Software Mentions: 2
Published: about 5 years ago

10.1186/s13195-018-0397-4

Alzheimer disease pathology and the cerebrospinal fluid proteome
Cited by: 61
Author(s): Loı̈c Dayon, Antonio Núñez Galindo, Jérôme Wojcik, Ornella Cominetti, John Corthésy, Aikaterini Oikonomidi, Hugues Henry, Martin Kussmann, Eugenia Migliavacca, India C. Severin, Gene L. Bowman, Julius Popp
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2164-13-452

Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines
Cited by: 75
Author(s): Christian Riedelsheimer, Frank Technow, Albrecht E. Melchinger
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-021-83828-3

Machine learning approaches for the prediction of bone mineral density by using genomic and phenotypic data of 5130 older men
Cited by: 6
Author(s): Qing Wu, Fatma Nasoz, Jong-Yun Jung, Bibek Bhattarai, Mira V. Han, Robert A. Greenes, Kenneth G. Saag
Software Mentions: 2
Published: over 5 years ago

10.1186/s13195-017-0270-x

One-carbon metabolism, cognitive impairment and CSF measures of Alzheimer pathology: homocysteine and beyond
Cited by: 46
Author(s): Loı̈c Dayon, Seu Ping Guiraud, John Corthésy, Laeticia Da Silva, Eugenia Migliavacca, Domilė Tautvydaitė, Aikaterini Oikonomidi, Barbara Moullet, Hugues Henry, Sylviane Métairon, Julien Marquis, Patrick Descombes, Sebastiano Collino, François-Pierre Martin, Ivan Montoliu, Martin Kussmann, Jérôme Wojcik, Gene L. Bowman, Julius Popp
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-018-4527-y

Predictors of breast cancer cell types and their prognostic power in breast cancer patients
Cited by: 14
Author(s): Fan Wang, Zachariah Dohogne, Yu Liu, Benjamin Soibam
Software Mentions: 2
Published: over 8 years ago

10.1016/j.addbeh.2018.02.017

Problematic internet use as an age-related multifaceted problem: Evidence from a two-site survey
Cited by: 124
Author(s): Konstantinos Ioannidis, Matthias S. Treder, Samuel R. Chamberlain, Franz J. Király, Sarah A. Redden, Dan J. Stein, Christine Löchner, Jon E. Grant
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-020-6676-z

Dissection of the mutation accumulation process during bacterial range expansions
Cited by: 6
Author(s): Lars Bosshard, Stephan Peischl, Martin Ackermann, Laurent Excoffier
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-016-3001-y

AID/APOBEC-network reconstruction identifies pathways associated with survival in ovarian cancer
Cited by: 15
Author(s): Martin Svoboda, Anastasia Meshcheryakova, Georg Heinze, Markus Jaritz, Dietmar Pils, Dan Cacsire Castillo‐Tong, G. Hager, Theresia Thalhammer, Erika Jensen‐Jarolim, Peter Birner, Elena Ioana Braicu, Jalid Sehouli, Sandrina Lambrechts, Ignace Vergote, Sven Mahner, Philip Zimmermann, Robert Zeillinger
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-018-5153-4

Paternal germ line aging: DNA methylation age prediction from human sperm
Cited by: 60
Author(s): Timothy G. Jenkins, Kenneth I. Aston, Bradley R. Cairns, Andrew D. Smith, Douglas T. Carrell
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-15-S10-S2

Improving miRNA-mRNA interaction predictions
Cited by: 25
Author(s): Daniel Tabas-Madrid, Ander Muniategui, Ignacio Sánchez-Caballero, Dannys Jorge Martínez-Herrera, Carlos Óscar S. Sorzano, Ángel Rubio, Alberto Pascual-Montano
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-021-88226-3

Neural network predicts need for red blood cell transfusion for patients with acute gastrointestinal bleeding admitted to the intensive care unit
Cited by: 7
Author(s): Dennis Shung, Jessie Huang, Egbert Castro, Joshua K. Tay, Michael Simonov, Loren Laine, Ramesh Batra, Smita Krishnaswamy
Software Mentions: 2
Published: over 5 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607