cran: glmnet | Projects | Ecosyste.ms: Papers

10.1080/07853890.2020.1868564

Clinical and inflammatory features based machine learning model for fatal risk prediction of hospitalized COVID-19 patients: results from a retrospective cohort study
Cited by: 84
Author(s): Xin Guan, Bo Zhang, Ming Fu, Mengying Li, Yuan Xu, Yaowu Zhu, Jing Peng, Huan Guo, Yanjun Lu
Software Mentions: 2
Published: almost 6 years ago

10.3390/antiox10071043

Lipid Peroxidation Assessment in Preclinical Alzheimer Disease Diagnosis
Cited by: 12
Author(s): Carmen Peña-Bautista, Lourdes Álvarez-Sánchez, I. Ferrer, Marina López-Nogueroles, Antonio José Cañada-Martínez, Camille Oger, Jean‐Marie Galano, Thierry Durand, Miquel Baquero, Consuelo Cháfer-Pericás
Software Mentions: 2
Published: over 5 years ago

10.1177/2040206618762985

Frequent cross-resistance to rilpivirine among subtype C HIV-1 from first-line antiretroviral therapy failures in South Africa
Cited by: 5
Author(s): Kerri J. Penrose, Chanson J. Brumme, Maritsa Scoulos-Hanson, Kristen A. Hamanishi, Kelley C. Gordon, Raquel Viana, Carole L. Wallis, P. Richard Harrigan, John W. Mellors, Urvi M. Parikh
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13075-019-1996-6

Pneumocystis pneumonia in patients with rheumatic diseases receiving prolonged, non-high-dose steroids—clinical implication of primary prophylaxis using trimethoprim–sulfamethoxazole
Cited by: 48
Author(s): Jung Won Park, Jeffrey R. Curtis, Min Jung Kim, Eun Bong Lee, Yeong Wook Song, Eun Bong Lee
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-14-S12-S1

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures
Cited by: 46
Author(s): Mohammed Alshalalfa, Reda Alhajj
Software Mentions: 2
Published: about 13 years ago

10.1186/s12859-018-2403-z

Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection
Cited by: 29
Author(s): Pierre Mahé, Maud Tournoud
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12859-017-1872-9

Identification of gene pairs through penalized regression subject to constraints
Cited by: 6
Author(s): Rex Shen, Lan Luo, Hui Jiang
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-14-5

Random generalized linear model: a highly accurate and interpretable ensemble predictor
Cited by: 92
Author(s): Song Lin, Peter Langfelder, Steve Horvath
Software Mentions: 2
Published: over 13 years ago

10.1186/s12859-020-03911-w

Compositional zero-inflated network estimation for microbiome data
Cited by: 6
Author(s): Min Jin Ha, Junghi Kim, Jessica Galloway-Peña, Kim Anh, Christine B. Peterson
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-021-08523-y

Development and validation of a clinical prediction model for endocervical curettage decision-making in cervical lesions
Cited by: 4
Author(s): Yuanxing Li, Haiwei Luo, Xiu Zhang, Jianmei Chang, Yueyang Zhao, Jing Li, Dongyan Li, Wei Wang
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-07017-7

The development and validation of a radiomic nomogram for the preoperative prediction of lung adenocarcinoma
Cited by: 7
Author(s): Qin Liu, Yan Huang, Huai Chen, Yanwen Liu, Ruihong Liang, Qing Zeng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-020-07688-2

A genomic-clinicopathologic nomogram for predicting overall survival of hepatocellular carcinoma
Cited by: 4
Author(s): Kena Zhou, Qiang Zhou, Congbo Cai
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12872-020-01634-7

Platelet counts are associated with arterial stiffness in Chinese Han population: a longitudinal study
Cited by: 4
Author(s): Kuo Li, Junfeng Xu, Lixin Tao, Kun Yang, Yang Sun, Xiuhua Guo
Software Mentions: 2
Published: about 6 years ago

10.1186/s12876-021-01638-3

Development of a novel lipid metabolism-based risk score model in hepatocellular carcinoma patients
Cited by: 10
Author(s): Wenjie Wang, Chen Zhang, Qihong Yu, Xiaojiao Zheng, Chuanzheng Yin, Xueke Yan, Gang Liu, Zifang Song
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2156-14-5

Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping
Cited by: 21
Author(s): Anhui Huang, Shizhong Xu, Xiaodong Cai
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-15-S10-S2

Improving miRNA-mRNA interaction predictions
Cited by: 25
Author(s): Daniel Tabas-Madrid, Ander Muniategui, Ignacio Sánchez-Caballero, Dannys Jorge Martínez-Herrera, Carlos Óscar S. Sorzano, Ángel Rubio, Alberto Pascual-Montano
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12864-018-5153-4

Paternal germ line aging: DNA methylation age prediction from human sperm
Cited by: 60
Author(s): Timothy G. Jenkins, Kenneth I. Aston, Bradley R. Cairns, Andrew D. Smith, Douglas T. Carrell
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-016-3001-y

AID/APOBEC-network reconstruction identifies pathways associated with survival in ovarian cancer
Cited by: 15
Author(s): Martin Svoboda, Anastasia Meshcheryakova, Georg Heinze, Markus Jaritz, Dietmar Pils, Dan Cacsire Castillo‐Tong, G. Hager, Theresia Thalhammer, Erika Jensen‐Jarolim, Peter Birner, Elena Ioana Braicu, Jalid Sehouli, Sandrina Lambrechts, Ignace Vergote, Sven Mahner, Philip Zimmermann, Robert Zeillinger
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-020-6676-z

Dissection of the mutation accumulation process during bacterial range expansions
Cited by: 6
Author(s): Lars Bosshard, Stephan Peischl, Martin Ackermann, Laurent Excoffier
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-018-4527-y

Predictors of breast cancer cell types and their prognostic power in breast cancer patients
Cited by: 14
Author(s): Fan Wang, Zachariah Dohogne, Yu Liu, Benjamin Soibam
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-13-452

Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines
Cited by: 75
Author(s): Christian Riedelsheimer, Frank Technow, Albrecht E. Melchinger
Software Mentions: 2
Published: about 14 years ago

10.1186/s12879-021-06510-z

Evaluation of the added value of viral genomic information for predicting severity of influenza infection
Cited by: 3
Author(s): Nina Van Goethem, Annie Robert, Nathalie Bossuyt, Laura A. E. Van Poelvoorde, Sophie Quoilin, Sigrid C. J. De Keersmaecker, Brecht Devleesschauwer, Isabelle Thomas, Kevin Vanneste, Nancy Roosens, Herman Van Oyen
Software Mentions: 2
Published: about 5 years ago

10.1186/1755-8794-5-10

DNA methylation differences at growth related genes correlate with birth weight: a molecular signature linked to developmental origins of adult disease?
Cited by: 85
Author(s): Nahid Turan, Mohamed Ghalwash, Sunita Katari, Christos Coutifaris, Zoran Obradović, Carmen Sapienza
Software Mentions: 2
Published: over 14 years ago

10.1186/s12920-020-0706-1

Identification of miRNA-mRNA associations in hepatocellular carcinoma using hierarchical integrative model
Cited by: 6
Author(s): Rency S. Varghese, Yuan Zhou, Megan E. Barefoot, Yifan Chen, Cristina Di Poto, Abdalla Kara Balla, Everett Oliver, Zaki A. Sherif, Deepak Kumar, Alexander Kroemer, Mahlet G. Tadesse, Habtom W. Ressom
Software Mentions: 2
Published: over 6 years ago

10.1186/s12920-018-0451-x

A robust fuzzy rule based integrative feature selection strategy for gene expression data in TCGA
Cited by: 4
Author(s): Shicai Fan, Jie Tang, Qi Tian, Chunguo Wu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12874-020-01058-z

Directed acyclic graphs and causal thinking in clinical risk prediction modeling
Cited by: 40
Author(s): Marco Piccininni, Stefan Konigorski, Jessica L. Rohmann, Tobias Kurth
Software Mentions: 2
Published: over 6 years ago

10.1186/s12874-019-0848-z

A comparison of machine learning techniques for classification of HIV patients with antiretroviral therapy-induced mitochondrial toxicity from those without mitochondrial toxicity
Cited by: 11
Author(s): Jong Soo Lee, Elijah Paintsil, Vivek Gopalakrishnan, Musie Ghebremichael
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12874-021-01297-8

Classification of PR-positive and PR-negative subtypes in ER-positive and HER2-negative breast cancers based on pathway scores
Cited by: 7
Author(s): Taobo Hu, Yan Chen, Yiqiang Liu, Danhua Zhang, Jiankang Pan, Mengping Long
Software Mentions: 2
Published: over 5 years ago

10.1186/s12883-021-02226-4

Accelerating diagnosis of Parkinson’s disease through risk prediction
Cited by: 13
Author(s): William Yuan, Brett K. Beaulieu‐Jones, Richard C. Krolewski, Nathan Palmer, Christine Veyrat‐Follet, Francesca Frau, Caroline Cohen, Sylvie Bozzi, Meaghan Cogswell, Dinesh Kumar, Catherine Coulouvrat, Bruno Leroy, Tanya Fischer, S. Pablo Sardi, Karen J. Chandross, Lee L. Rubin, Anne‐Marie Wills, Isaac S. Kohane, Scott Lipnick
Software Mentions: 2
Published: over 5 years ago

10.1186/1753-6561-6-S2-S10

Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions
Cited by: 228
Author(s): Joseph O. Ogutu, Torben Schulz-Streeck, Hans‐Peter Piepho
Software Mentions: 2
Published: over 14 years ago

10.1186/1753-6561-5-S9-S69

Using LASSO regression to detect predictive aggregate effects in genetic studies
Cited by: 14
Author(s): Joel Fontanarosa, Yang Dai
Software Mentions: 2
Published: almost 15 years ago

10.1186/1753-6561-5-S9-S113

Comparison of statistical approaches to rare variant analysis for quantitative traits
Cited by: 9
Author(s): Han Chen, Audrey E. Hendricks, Yansong Cheng, L. Adrienne Cupples, Josée Dupuis, Ching‐Ti Liu
Software Mentions: 2
Published: almost 15 years ago

10.1186/1753-6561-5-S9-S24

LASSO model selection with post-processing for a genome-wide association study data set
Cited by: 6
Author(s): Allan Motyer, Chris McKendry, Sally Galbraith, Susan R. Wilson
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12889-016-3239-y

Factors associated with performing tuberculosis screening of HIV-positive patients in Ghana: LASSO-based predictor selection in a large public health data set
Cited by: 28
Author(s): Susanne Mueller‐Using, Torsten Feldt, Fred Stephen Sarfo, Kirsten Alexandra Eberhardt
Software Mentions: 2
Published: about 10 years ago

10.1186/s12890-019-0782-1

Development and validation of a simple-to-use clinical nomogram for predicting obstructive sleep apnea
Cited by: 30
Author(s): Huajun Xu, Xiaolong Zhao, Yue Shi, Xinyi Li, Yingjun Qian, Jian Zou, Hongliang Yi, Huizhen Huang, Jian Guan, Shankai Yin
Software Mentions: 2
Published: over 7 years ago

10.1186/s12918-016-0260-9

Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity
Cited by: 23
Author(s): Ana B. Pavel, Dmitriy Sonkin, Anupama Reddy
Software Mentions: 2
Published: over 10 years ago

10.1186/1752-0509-8-S1-S6

Identifying disease associated genes by network propagation
Cited by: 26
Author(s): Yu Qian, Søren Besenbacher, Thomas Mailund, Mikkel H. Schierup
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12917-020-02352-0

MRI perfusion analysis using freeware, standard imaging software
Cited by: 1
Author(s): Antje Hartmann, Volkher B. Scholz, Ines E. Lautenschläger
Software Mentions: 2
Published: over 6 years ago

10.1136/bmjopen-2020-045780

Changes of perceptions and behaviours during the phases of COVID-19 pandemic in German elderly people with neurological disorders: an observational study using telephone interviews
Cited by: 3
Author(s): Hannah M. Zipprich, Aline Schönenberg, Ulrike Teschner, Tino Prell
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13040-017-0159-z

Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data
Cited by: 11
Author(s): Zhenqiu Liu, Fengzhu Sun, Dermot P. McGovern
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13040-018-0162-z

Identification of influential observations in high-dimensional cancer survival data through the rank product test
Cited by: 10
Author(s): Eunice Carrasquinha, André Veríssimo, Marta B. Lopes, Susana Vinga
Software Mentions: 2
Published: over 8 years ago

10.3390/biology10050375

Identification of an 11-Autophagy-Related-Gene Signature as Promising Prognostic Biomarker for Bladder Cancer Patients
Cited by: 6
Author(s): Chunhui Zhou, Alex Heng Li, Shan Liu, Hong Sun
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/9078603

Differentiation of Pelvic Osteosarcoma and Ewing Sarcoma Using Radiomic Analysis Based on T2-Weighted Images and Contrast-Enhanced T1-Weighted Images
Cited by: 13
Author(s): Yi Dai, Ping Yin, Ning Mao, Chao Sun, Jiangfen Wu, Guangming Cheng, Nan Hong
Software Mentions: 2
Published: over 6 years ago

10.3390/biomedicines9030281

Diagnostic Value of Conventional PET Parameters and Radiomic Features Extracted from 18F-FDG-PET/CT for Histologic Subtype Classification and Characterization of Lung Neuroendocrine Neoplasms
Cited by: 10
Author(s): Philippe Thuillier, Virginia Liberini, Osvaldo Rampado, E. Gallio, Bruno De Santi, Francesco Ceci, Jasna Metović, Mauro Papotti, Marco Volante, Filippo Molinari, Désirèe Deandreis
Software Mentions: 2
Published: over 5 years ago

10.1093/biostatistics/kxy035

The joint lasso: high-dimensional regression for group structured data
Cited by: 21
Author(s): Frank Dondelinger, Sach Mukherjee
Software Mentions: 2
Published: about 8 years ago

10.1038/s41416-018-0200-0

Identification of beta-arrestin-1 as a diagnostic biomarker in lung cancer
Cited by: 11
Author(s): Victoria El-Khoury, Mélanie Béland, Anna Schritz, Sang Yoon Kim, Petr V. Nazarov, Louis Gaboury, Katriina Sertamo, François Bernardin, Roxane Batutu, Laurent Antunes, Catherine W Bennett, François Faÿs, Guy Berchem, Yeoun Jin Kim
Software Mentions: 2
Published: about 8 years ago

10.1007/s00429-017-1414-2

Risk and protective factors for structural brain ageing in the eighth decade of life
Cited by: 36
Author(s): Stuart J. Ritchie, Elliot M. Tucker‐Drob, Simon R. Cox, David Alexander Dickie, María del C. Valdés Hernández, Janie Corley, Natalie A. Royle, Paul Redmond, Susana Muñoz Maniega, Alison Pattie, Benjamin S. Aribisala, Adele M. Taylor, Toni‐Kim Clarke, Alan J. Gow, John M. Starr, Mark E. Bastin, Joanna M. Wardlaw, Ian J. Deary
Software Mentions: 2
Published: over 9 years ago

10.1590/1414-431X2020e10612

Prognostic implications of immune-related eight-gene signature in pediatric brain tumors
Cited by: 6
Author(s): Yi Wang, Chuan Zhou, Huan Luo, Jing Cao, Chi Ma, Lulu Cheng, Yang Yang
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/9926704

Predictors of Successful Yttrium-90 Radioembolization Bridging or Downstaging in Patients with Hepatocellular Carcinoma
Cited by: 2
Author(s): Alexander Villalobos, W. Wagstaff, Mengzhou Guo, James Zhang, Zachary L. Bercu, Morgan Whitmore, M. Cristescu, Bill S. Majdalany, Joel Wedd, Mehmet Akce, Joseph F. Magliocca, Nima Kokabi
Software Mentions: 2
Published: about 5 years ago

10.1186/s12935-020-01191-1

Overexpression of kinesin superfamily members as prognostic biomarkers of breast cancer
Cited by: 60
Author(s): Tianfu Li, Huijuan Zeng, Shan Zhang, Run-Yi Ye, Tuck−Yun Cheang, Yunjian Zhang, Si-Hong Lu, Qi Zhang, Nan Shao, Ying Lin
Software Mentions: 2
Published: over 6 years ago

10.1186/s12935-021-02146-w

Identification of a robust signature for clinical outcomes and immunotherapy response in gastric cancer: based on N6-methyladenosine related long noncoding RNAs
Cited by: 14
Author(s): Tenghui Han, Dong Xu, Zhu Jun, Jipeng Li, Lei Liu, Yanchun Deng
Software Mentions: 2
Published: about 5 years ago

10.1186/s40644-021-00400-y

Are radiomics features universally applicable to different organs?
Cited by: 5
Author(s): Seung-Hak Lee, H. Cho, Junmo Kwon, Ho Yun Lee, Hyunjin Park
Software Mentions: 2
Published: over 5 years ago

10.1186/s40644-021-00387-6

A CT-based radiomics nomogram for distinguishing between benign and malignant bone tumours
Cited by: 17
Author(s): Wei Sun, Shunli Liu, Jia Guo, Song Liu, Dapeng Hao, Feng Hou, Hexiang Wang, Wenjian Xu
Software Mentions: 2
Published: over 5 years ago

10.1007/s11517-018-1831-2

Wavelet-promoted sparsity for non-invasive reconstruction of electrical activity of the heart
Cited by: 11
Author(s): Matthijs Cluitmans, Joël Karel, Pietro Bonizzi, Paul G.A. Volders, Ronald L. Westra, Ronald Peeters
Software Mentions: 2
Published: over 8 years ago

10.3390/metabo7030032

Development and Validation of a High-Throughput Mass Spectrometry Based Urine Metabolomic Test for the Detection of Colonic Adenomatous Polyps
Cited by: 29
Author(s): Lu Deng, David D. Chang, Rae Foshaug, Roman Eisner, Victor Tso, David S. Wishart, Richard N. Fedorak
Software Mentions: 2
Published: over 9 years ago

10.3390/metabo11020082

Metabolic Predictors of Equine Performance in Endurance Racing
Cited by: 3
Author(s): Anna Halama, João Miguel Oliveira, Silvio A. Filho, Muhammad Qasim, Iman W Achkar, Sarah Johnson, Karsten Suhre, Tatiana Vinardell
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo10030096

Metabolomics to Exploit the Primed Immune System of Tomato Fruit
Cited by: 23
Author(s): Estrella Luna, Amélie Flandin, Cédric Cassan, Sylvain Prigent, Chloé Chevanne, Camélia Feyrouse Kadiri, Yves Gibon, Pierre Pétriacq
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms7030079

Multi-Level Model to Predict Antibody Response to Influenza Vaccine Using Gene Expression Interaction Network Feature Selection
Cited by: 11
Author(s): Saeid Parvandeh, G. A. Poland, Richard B. Kennedy, Brett A. McKinney
Software Mentions: 2
Published: over 7 years ago

10.1186/s13229-019-0307-z

Persistence and predictors of self-injurious behaviour in autism: a ten-year prospective cohort study
Cited by: 23
Author(s): Catherine Laverty, Chris Oliver, Joanna Moss, Lisa Nelson, Caroline Richards
Software Mentions: 2
Published: over 6 years ago

10.1128/MCB.00125-17

Long Noncoding RNA JHDM1D-AS1 Promotes Tumor Growth by Regulating Angiogenesis in Response to Nutrient Starvation
Cited by: 36
Author(s): Ayano Kondo, Aya Nonaka, Teppei Shimamura, Shozo Yamamoto, Tatsushi Yoshida, Tatsuhiko Kodama, Hiroyuki Aburatani, Tsuyoshi Osawa
Software Mentions: 2
Published: about 9 years ago

10.1002/1878-0261.12359

Construction of a set of novel and robust gene expression signatures predicting prostate cancer recurrence
Cited by: 19
Author(s): Yanzhi Jiang, Wenjuan Mei, Yan Gu, Xiaozeng Lin, Lizhi He, Hui Zeng, Fengxiang Wei, Xinhong Wan, Huixiang Yang, Pierre Major, Damu Tang
Software Mentions: 2
Published: about 8 years ago

10.1002/1878-0261.12350

A fine‐needle aspiration‐based protein signature discriminates benign from malignant breast lesions
Cited by: 11
Author(s): Bo Franzén, Masood Kamali‐Moghaddam, Andrey Alexeyenko, Thomas Hatschek, Susanne Becker, Lotta Wik, Jonas Kierkegaard, Å. Eriksson, Naveen Reddy Muppani, Gert Auer, Ulf Landegren, Rolf Lewensohn
Software Mentions: 2
Published: about 8 years ago

10.1038/s41380-020-0668-x

DNA methylation signature on phosphatidylethanol, not on self-reported alcohol consumption, predicts hazardous alcohol consumption in two distinct populations
Cited by: 19
Author(s): Xiaoyu Liang, Amy C. Justice, Kaku So‐Armah, John H. Krystal, Rajita Sinha, Ke Xu
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.202110426

Machine learning identifies molecular regulators and therapeutics for targeting SARS‐CoV2‐induced cytokine release
Cited by: 12
Author(s): Marina Chan, Siddharth Vijay, John McNevin, M. Juliana McElrath, Eric C. Holland, Taranjit S. Gujral
Software Mentions: 2
Published: about 5 years ago

10.12688/wellcomeopenres.15583.1

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
Cited by: 6
Author(s): Jan Kokko, Ulpu Remes, Owen Thomas, Henri Pesonen, Jukka Corander
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.2721

A methodology for the design of experiments in computational intelligence with multiple regression models
Cited by: 23
Author(s): Carlos Fernández-Lozano, Marcos Gestal, Cristian R. Munteanu, Julián Dorado, Alejandro Pazos
Software Mentions: 2
Published: almost 10 years ago

10.7717/peerj.6781

Assessment on latitudinal tree species richness using environmental factors in the southeastern United States
Cited by: 7
Author(s): Youngsang Kwon, Taesoo Lee, Alison Lang, Dorian J. Burnette
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10297

Gene signature for prognosis in comparison of pancreatic cancer patients with diabetes and non-diabetes
Cited by: 0
Author(s): Mingjun Yang, Boni Song, Juxiang Liu, Zhitong Bing, Yangang Wang, Linmiao Yu
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.8245

Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas
Cited by: 9
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pbio.3000882

Independent representations of self-motion and object location in barrel cortex output
Cited by: 7
Author(s): Jonathan Andrew Cheung, Phillip Maire, Jin-Ho Kim, Kiana Lee, Garrett Flynn, Samuel Andrew Hires
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1001014

Gene Expression Network Reconstruction by Convex Feature Selection when Incorporating Genetic Perturbations
Cited by: 67
Author(s): Benjamin A. Logsdon, Jason G. Mezey
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pcbi.1004856

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System
Cited by: 8
Author(s): Yael Steuerman, Irit Gat‐Viks
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1005887

Complete hazard ranking to analyze right-censored data: An ALS survival study
Cited by: 23
Author(s): Zhengnan Huang, Hongjiu Zhang, Jonathan Boss, Stephen A. Goutman, Bhramar Mukherjee, Ivo D. Dinov, Yuanfang Guan
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pcbi.1005113

Network Receptive Field Modeling Reveals Extensive Integration and Multi-feature Selectivity in Auditory Cortical Neurons
Cited by: 56
Author(s): Nicol S. Harper, Oliver Schoppe, Ben D. B. Willmore, Zhanfeng Cui, Jan W. H. Schnupp, Andrew King
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pcbi.1006618

A dynamic network model of temporal receptive fields in primary auditory cortex
Cited by: 17
Author(s): Monzilur Rahman, Ben D. B. Willmore, Andrew J. King, Nicol S. Harper
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1005147

Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control
Cited by: 59
Author(s): Ophir Shalem, Eilon Sharon, Shai Lubliner, Ifat Regev, Maya Lotan-Pompan, Zohar Yakhini, Eran Segal
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pmed.1002108

Pancreatic Cancer Surgical Resection Margins: Molecular Assessment by Mass Spectrometry Imaging
Cited by: 74
Author(s): Lívia S. Eberlin, Katherine Margulis, Planell-Mendez Ivette, Richard N. Zare, Robert Tibshirani, Teri A. Longacre, Mehdi Jalali, Jeffrey A. Norton, George A. Poultsides
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pmed.1001743

Association of Medical Students' Reports of Interactions with the Pharmaceutical and Medical Device Industries and Medical School Policies and Characteristics: A Cross-Sectional Study
Cited by: 11
Author(s): James S. Yeh, Kirsten Austad, Jessica M. Franklin, Susan Chimonas, Eric G. Campbell, Jerry Avorn, Aaron S. Kesselheim
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pmed.1001759

The kSORT Assay to Detect Renal Transplant Patients at High Risk for Acute Rejection: Results of the Multicenter AART Study
Cited by: 146
Author(s): Silke Roedder, Tara K. Sigdel, Nathan Salomonis, Szu‐Chuan Hsieh, Hong Dai, Oriol Bestard, Diana Metes, Adriana Zeevi, Albin Gritsch, Jennifer A. Cheeseman, Camila Macedo, Ram Peddy, Mara Medeiros-Domingo, Flavio Vincenti, Nancy Asher, Oscar Salvatierra, Ron Shapiro, Allan D. Kirk, Elaine F. Reed, Minnie M. Sarwal
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pntd.0005295

Forecasting Zika Incidence in the 2016 Latin America Outbreak Combining Traditional Disease Surveillance with Search, Social Media, and News Report Data
Cited by: 151
Author(s): Sarah F. McGough, John S. Brownstein, Joseph E. Hawkins, Mauricio Santillana
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0106664

Detecting Gunshots Using Wearable Accelerometers
Cited by: 12
Author(s): Charles Loeffler
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0189181

DNA methylation levels in candidate genes associated with chronological age in mammals are not conserved in a long-lived seabird
Cited by: 6
Author(s): Ricardo De Paoli-Iseppi, Andrea M. Polanowski, Clive R. McMahon, Bruce E. Deagle, Joanne L. Dickinson, Mark A. Hindell, Simon Jarman
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0141869

Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets
Cited by: 14
Author(s): Hee-Won Park, Seiya Imoto, Satoru Miyano
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0189508

Brain-to-brain hyperclassification reveals action-specific motor mapping of observed actions in humans
Cited by: 11
Author(s): Д. А. Смирнов, Fanny Lachat, Tomi Peltola, Juha M. Lahnakoski, Olli-Pekka Koistinen, Enrico Glerean, Aki Vehtari, Riitta Hari, Mikko Sams, Lauri Nummenmaa
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0238731

The interdependency structure in the Mexican stock exchange: A network approach
Cited by: 2
Author(s): Erick Treviño Aguilar
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0114885

Computational Pathology to Discriminate Benign from Malignant Intraductal Proliferations of the Breast
Cited by: 107
Author(s): Fei Dong, Humayun Irshad, Eunsun Oh, Melinda F. Lerwill, Elena F. Brachtel, Nicholas Jones, Nicholas W. Knoblauch, Laleh Montaser‐Kouhsari, Nicole B. Johnson, Luigi Rao, Beverly E. Faulkner-Jones, David C. Wilbur, Stuart J. Schnitt, Andrew H. Beck
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0154313

Molecular Predictors of Long-Term Survival in Glioblastoma Multiforme Patients
Cited by: 39
Author(s): Jie Lü, Matthew C. Cowperthwaite, Mark G. Burnett, Max Shpak
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0123946

Developing a Prognostic Micro-RNA Signature for Human Cervical Carcinoma
Cited by: 31
Author(s): Christine How, Melania Pintilie, Jeff Bruce, Angela Bik‐Yu Hui, Blaise A. Clarke, Philip Wong, Shaoming Yin, Rui Yan, Daryl Waggott, Paul C. Boutros, Anthony Fyles, David W. Hedley, Richard P. Hill, Michael Milosevic, Fei‐Fei Liu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0062471

FDG PET and MRI in Logopenic Primary Progressive Aphasia versus Dementia of the Alzheimer’s Type
Cited by: 96
Author(s): Ajay A Madhavan, Jennifer L. Whitwell, Stephen D. Weigand, Joseph R. Duffy, Edythe A. Strand, Mary M. Machulda, Nirubol Tosakulwong, Matthew L. Senjem, Jeffrey L. Gunter, Val J. Lowe, Ronald C. Petersen, Clifford R. Jack, Keith A. Josephs
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0150744

A Cross-Sectional Study of Water, Sanitation, and Hygiene-Related Risk Factors for Soil-Transmitted Helminth Infection in Urban School- and Preschool-Aged Children in Kibera, Nairobi
Cited by: 47
Author(s): Caitlin M. Worrell, Ryan E. Wiegand, Stephanie M. Davis, Kennedy Odero, Anna J. Blackstock, Victoria M. Cuéllar, Sammy M. Njenga, Joel M. Montgomery, Sharon L. Roy, LeAnne M. Fox
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0236957

A simple nomogram score for screening patients with type 2 diabetes to detect those with hypertension: A cross-sectional study based on a large community survey in China
Cited by: 7
Author(s): Mingyue Xue, Li Liu, Shuxia Wang, Yinxia Su, Kun Lv, Mingchen Zhang, Hua Yao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0072199

Measuring Visual Field Progression in the Central 10 Degrees Using Additional Information from Central 24 Degrees Visual Fields and ‘Lasso Regression’
Cited by: 17
Author(s): Ryo Asaoka
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0248746

Gene flow in commercial alfalfa (Medicago sativa subsp. sativa L.) seed production fields: Distance is the primary but not the sole influence on adventitious presence
Cited by: 6
Author(s): Sandya R. Kesoju, Matthew Kramer, Johanne Brunet, Stephanie L. Greene, Amelia Jordan, Ruth C. Martin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0160733

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data
Cited by: 31
Author(s): A. M. C. Chan, Martha T. Hamblin, Jean‐Luc Jannink
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0250198

Characteristics of spirochetemic patients with a solitary erythema migrans skin lesion in Europe
Cited by: 3
Author(s): Vera Maraspin, Katarina Ogrinc, Tereza Rojko, Petra Bogovič, Eva Ružić‐Sabljić, Andrej Kastrin, Gary P. Wormser, Franc Strle
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0241083

Predicting overdose among individuals prescribed opioids using routinely collected healthcare utilization data
Cited by: 7
Author(s): Jenny W Sun, Jessica M. Franklin, Kathryn Rough, Rishi Desai, Sonia Hernández–Dı́az, Krista F. Huybrechts, Brian T. Bateman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0160715

Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests
Cited by: 85
Author(s): Philip Zylstra, Ross A. Bradstock, Michael Bedward, Trent D. Penman, Michael Doherty, R. O. Weber, A. Malcolm Gill, Geoffrey J. Cary
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0213258

Exploring the use of machine learning for risk adjustment: A comparison of standard and penalized linear regression models in predicting health care costs in older adults
Cited by: 37
Author(s): Hong Kan, Hadi Kharrazi, Hsien Yen Chang, Dave Bodycombe, K Lemke, Jonathan P. Weiner
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0196038

Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots
Cited by: 2
Author(s): Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0227315

Radiomics signature for prediction of lateral lymph node metastasis in conventional papillary thyroid carcinoma
Cited by: 29
Author(s): Vivian Youngjean Park, Kyunghwa Han, Hye Jung Kim, Eun Jung Lee, Ji Hyun Youk, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 2
Published: over 6 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607