cran: glmnet | Projects | Ecosyste.ms: Papers

10.3390/curroncol28040255

Clinicopathological Characteristics and Prognostic Factors in Ovarian Metastases from Right- and Left-Sided Colorectal Cancer
Cited by: 1
Author(s): Ondřej Kubeček, Ján Laco, Jiří Špaček, Alena Kubečková, Jiřı́ Petera, Iva Krulichova, Aleš Bezrouk, Stanislav Filip, J Kopecký
Software Mentions: 2
Published: about 5 years ago

10.7759/cureus.3426

Multiparametric Magnetic Resonance Imaging in the Assessment of Primary Brain Tumors Through Radiomic Features: A Metric for Guided Radiation Treatment Planning
Cited by: 12
Author(s): Edward Florez, Todd A. Nichols, Ellen Parker, Seth T. Lirette, Candace M. Howard, Ali Fatemi
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13054-018-2215-6

Development and internal validation of the multivariable CIPHER (Collaborative Integrated Pregnancy High-dependency Estimate of Risk) clinical risk prediction model
Cited by: 13
Author(s): Beth Payne, Helen Ryan, Jeffrey Bone, Laura A. Magee, A. Aarvold, J. Mark Ansermino, Zulfiqar A Bhutta, M. Bowen, José Guilherme Cecatti, Cynthia Chazotte, Tim M. Crozier, Anne-Cornélie J. M. Pont, Oktay Demirkıran, Tao Duan, Marlot C. Kallen, Wessel Ganzevoort, Michael Geary, Dena Goffman, Jennifer A. Hutcheon, K.S. Joseph, Stephen E. Lapinsky, Isam Lataifeh, Jing Li, Sarka Liskonova, Emily M. Hamel, Fionnuala M. McAuliffe, Colm O’Herlihy, Ben Willem J. Mol, P. G. R. Seaward, Ramzy Edward Tadros, Türkan Toğal, Rahat Qureshi, Ugochinyere Vivian Ukah, Daniela N. Vásquez, Euan M. Wallace, Paul J. Yong, Vivian Zhou, Keith R. Walley, Peter von Dadelszen
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.csbj.2019.04.004

Interrelations of Sphingolipid and Lysophosphatidate Signaling with Immune System in Ovarian Cancer
Cited by: 19
Author(s): Anastasia Meshcheryakova, Martin Svoboda, Markus Jaritz, Felicitas Mungenast, Martina Salzmann, Dietmar Pils, Dan Cacsire Castillo‐Tong, G. Hager, Andrea Wolf, Elena Ioana Braicu, Jalid Sehouli, Sandrina Lambrechts, Ignace Vergote, Sven Mahner, Peter Birner, Philip Zimmermann, David N. Brindley, Georg Heinze, Robert Zeillinger
Software Mentions: 2
Published: over 7 years ago

10.1001/jamanetworkopen.2021.16853

Assessment of Somatosensory Function and Self-harm in Adolescents
Cited by: 8
Author(s): Tatum M. Cummins, Oliver English, Helen Minnis, Daniel Ståhl, Rory C. O’Connor, Kirsty Bannister, Stephen B. McMahon, Dennis Ougrin
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-019-0324-7

Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Cited by: 40
Author(s): Daichi Shigemizu, Shintaro Akiyama, Yuya Asanomi, Keith A. Boroevich, Alok Sharma, Tatsuhiko Tsunoda, Kana Matsukuma, Makiko Ichikawa, Hiroko Sudo, Satoko Takizawa, Takashi Sakurai, Kouichi Ozaki, Takahiro Ochiya, Shumpei Niida
Software Mentions: 2
Published: over 7 years ago

10.1093/jamiaopen/ooz040

Using natural language processing to construct a metastatic breast cancer cohort from linked cancer registry and electronic medical records data
Cited by: 32
Author(s): Albee Y. Ling, Allison W. Kurian, Jennifer L. Caswell-Jin, George W. Sledge, Nigam H. Shah, Suzanne Tamang
Software Mentions: 2
Published: almost 7 years ago

10.1002/ctm2.189

Insights into the prognosis of lipidomic dysregulation for death risk in patients with coronary artery disease
Cited by: 13
Author(s): Min Qin, Qian Zhu, Wen‐Ter Lai, Qin Ma, Chen Liu, Xiaoping Chen, Yuelin Zhang, Zixian Wang, Hui Cai, Hong Yan, He-Ping Lei, Shuyao Zhang, Xuekui Dong, Hong Wang, Min Huang, Qizhou Lian, Shilong Zhong
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12014-018-9216-y

A two-step strategy for identification of plasma protein biomarkers for endometrial and ovarian cancer
Cited by: 17
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-016-0260-z

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy
Cited by: 25
Author(s): Milan S. Geybels, Jonathan L. Wright, Marina Bibikova, Brandy Klotzle, Jie Fan, Shanshan Zhao, Ziding Feng, Elaine A. Ostrander, Daniel W. Lin, Peter S. Nelson, Janet L. Stanford
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13148-021-01174-7

Investigating the DNA methylation profile of e-cigarette use
Cited by: 7
Author(s): Rebecca C Richmond, Carlos Sillero‐Rejon, Jasmine N Khouja, Claire Prince, Alexander G. Board, Gemma C Sharp, Matthew Suderman, Caroline L Relton, Marcus R. Munafò, Suzanne H. Gage
Software Mentions: 2
Published: almost 5 years ago

10.1200/PO.19.00206

Model Combining Tumor Molecular and Clinicopathologic Risk Factors Predicts Sentinel Lymph Node Metastasis in Primary Cutaneous Melanoma
Cited by: 56
Author(s): Domenico Bellomo, Suzette M. Arias‐Mejias, Chilakamarti V. Ramana, Joel B. Heim, Enrica Quattrocchi, Sindhuja Sominidi‐Damodaran, Alina G. Bridges, Julia S. Lehman, Tina J. Hieken, James W. Jakub, Mark R. Pittelkow, David J. DiCaudo, Barbara A. Pockaj, Jason C. Sluzevich, Mark A. Cappel, Sanjay P. Bagaria, Charles Perniciaro, Félicia Tjien-Fooh, Martin H. van Vliet, Jvalini Dwarkasing, Alexander Meves
Software Mentions: 2
Published: almost 6 years ago

10.1200/PO.20.00086

Protein Signature Predicts Response to Neoadjuvant Treatment With Chemotherapy and Bevacizumab in HER2-Negative Breast Cancers
Cited by: 4
Author(s): Mads H. Haugen, Ole Christian Lingjærde, Ingrid Hedenfalk, Øystein Garred, Elin Borgen, Niklas Loman, Thomas Hatschek, Anne Lise Børresen-Dale, Bjørn Naume, Gordon B. Mills, Gunhild M. Mælandsmo, Olav Engebraaten
Software Mentions: 2
Published: over 5 years ago

10.1200/PO.21.00103

Making External Validation Valid for Molecular Classifier Development
Cited by: 1
Author(s): Yilin Wu, Hsin‐Chieh Huang, Li‐Xuan Qin
Software Mentions: 2
Published: almost 5 years ago

10.1093/jamia/ocz004

Quantifying risk factors in medical reports with a context-aware linear model
Cited by: 3
Author(s): Piotr Przybyła, Austin J. Brockmeier, Sophia Ananiadou
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-019-0730-1

Statistical predictions with glmnet
Cited by: 352
Author(s): Solveig Engebretsen, Jon Bohlin
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells8050456

CD4+/CD45RO+: A Potential Biomarker of the Clinical Response to Glatiramer Acetate
Cited by: 0
Author(s): Martin Vališ, Lukáš Sobíšek, Oldřich Vyšata, Blanka Klímová, Ctirad Andrýs, Doris Vokurková, J Masopust, Zbyšek Pavelek
Software Mentions: 2
Published: over 7 years ago

10.7150/jca.37708

Precise prediction of the radiation pneumonitis in lung cancer: an explorative preliminary mathematical model using genotype information
Cited by: 5
Author(s): Le Du, Ning Ma, X. Dai, Yu Wang, Xiang Huang, Shouping Xu, Fang Liu, Qiduo He, Yanli Li, Qian Wang, Xiangtao Liu, Hui Zheng, Baolin Qu
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers13030392

Radiomics Features of 18F-Fluorodeoxyglucose Positron-Emission Tomography as a Novel Prognostic Signature in Colorectal Cancer
Cited by: 9
Author(s): Jeonghyun Kang, Jae Hoon Lee, Hye Sun Lee, Eun Suk Cho, Eun Jung Park, Seung Hyuk Baik, Kang Young Lee, Chihyun Park, Yunku Yeu, Jean R. Clemenceau, Sunho Park, Hongming Xu, Changjin Hong, Tae Hyun Hwang
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.46386

Multiomics profile and prognostic gene signature of m6A regulators in uterine corpus endometrial carcinoma
Cited by: 23
Author(s): Yizi Wang, Fang Ren, Zixuan Song, Xiaoying Wang, Xiaoxin Ma
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers12113471

Construction of a Novel Multigene Panel Potently Predicting Poor Prognosis in Patients with Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Xiaozeng Lin, Anil Kapoor, Yan Gu, Mathilda Jing Chow, Jingyi Peng, Pierre Major, Damu Tang
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.46093

Prognostic impact of tumor budding and EMT in periampullary adenocarcinoma: a quantitative approach
Cited by: 6
Author(s): Éva Kocsmár, Gábor Lotz, András Kiss, Michaela Hoerner, Ekaterina Petrova, Nikolaus Freudenberg, Ágnes Csanádi, Birte Kulemann, Martin Werner, Peter Bronsert, Ulrich F. Wellner
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers12061432

Association of a CT-Based Clinical and Radiomics Score of Non-Small Cell Lung Cancer (NSCLC) with Lymph Node Status and Overall Survival
Cited by: 32
Author(s): Francesca Botta, Sara Raimondi, Lisa Rinaldi, Federica Bellerba, Federica Corso, Vincenzo Bagnardi, Daniela Origgi, Rocco Minelli, Giovanna Pitoni, Francesco Petrella, Lorenzo Spaggiari, Alessio Giuseppe Morganti, Filippo Del Grande, Massimo Bellomi, Stefania Rizzo
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-020-07017-7

The development and validation of a radiomic nomogram for the preoperative prediction of lung adenocarcinoma
Cited by: 7
Author(s): Qin Liu, Yan Huang, Huai Chen, Yanwen Liu, Ruihong Liang, Qing Zeng
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.101211

An epigenetic aging clock for dogs and wolves
Cited by: 107
Author(s): Michael J. Thompson, Bridgett M. vonHoldt, Steve Horvath, Matteo Pellegrini
Software Mentions: 2
Published: over 9 years ago

10.3390/cancers12082071

Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways
Cited by: 30
Author(s): Patrícia P. Reis, Sandra A. Drigo, Robson Francisco Carvalho, Rainer Marco López Lapa, Tainara F. Felix, Devalben Patel, Dangxiao Cheng, Melania Pintilie, Geoffrey Liu, Ming‐Sound Tsao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0106985

Generalized Linear Model for Mapping Discrete Trait Loci Implemented with LASSO Algorithm
Cited by: 4
Author(s): Jun Xing, Huijiang Gao, Yang Wu, Yani Wu, Hongwang Li, Runqing Yang
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0132745

Pro-Inflammatory Cytokines Predict Relapse-Free Survival after One Month of Interferon-α but Not Observation in Intermediate Risk Melanoma Patients
Cited by: 9
Author(s): Ahmad A. Tarhini, Yan Lin, Haris Zahoor, Yongli Shuai, Lisa H. Butterfield, Steven Ringquist, Helen Gogas, Cindy Sander, Sandra Lee, Sanjiv S. Agarwala, John M. Kirwood
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0183228

Metabolite patterns predicting sex and age in participants of the Karlsruhe Metabolomics and Nutrition (KarMeN) study
Cited by: 141
Author(s): M Rist, Alexander Röth, Lara Frommherz, Christoph H. Weinert, Ralf Krüger, Benedikt Merz, Diana Bunzel, Carina Mack, Björn Egert, Achim Bub, Benjamin Görling, Pavleta Tzvetkova, Burkhard Luy, Ingrid Hoffmann, Sabine E. Kulling, Bernhard Watzl
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0121295

Development and Validation of a Risk Score for Predicting Death after Pneumonectomy
Cited by: 7
Author(s): Seyer Safi, Axel Benner, Janos Walloschek, María Renner, Jan op den Winkel, Thomas Muley, Konstantina Storz, Hendrik Dienemann, Hans Hoffmann, Thomas Schneider
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0034157

Metabonomic Profiles Delineate the Effect of Traditional Chinese Medicine Sini Decoction on Myocardial Infarction in Rats
Cited by: 78
Author(s): Guangguo Tan, Wenting Liao, Xin Dong, Genjing Yang, Zhenyu Zhu, Wuhong Li, Yifeng Chai, Ziyang Lou
Software Mentions: 2
Published: over 14 years ago

10.18632/aging.101508

Epigenetic clock for skin and blood cells applied to Hutchinson Gilford Progeria Syndrome and ex vivo studies
Cited by: 322
Author(s): Steve Horvath, Junko Oshima, George M. Martin, Ake T. Lu, Austin Quach, Howard A. Cohen, Sarah Felton, Mieko Matsuyama, Donna Lowe, Sylwia Kabacik, James G. Wilson, Alex P. Reiner, Anna Maierhofer, Julia Flunkert, Abraham Aviv, Lifang Hou, Andrea A. Baccarelli, Yun Li, James D. Stewart, Eric A. Whitsel, Luigi Ferrucci, Shigemi Matsuyama, Kenneth Raj
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0203133

The proteomic and metabolomic characterization of exercise-induced sweat for human performance monitoring: A pilot investigation
Cited by: 31
Author(s): Sean W. Harshman, Rhonda L. Pitsch, Zachary K Smith, Maegan L. O’Connor, Brian Geier, Anthony Qualley, Nicole M. Schaeublin, Molly Voelz Fischer, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0040922

Genetic Markers Enhance Coronary Risk Prediction in Men: The MORGAM Prospective Cohorts
Cited by: 83
Author(s): Maria Hughes, Olli Saarela, Jan Stritzke, Frank Kee, Kaisa Silander, Norman Klopp, Jukka Kontto, Juha Karvanen, Christina Willenborg, Veikko Salomaa, Jarmo Virtamo, Philippe Amouyel, Dominique Arveiler, Jean Ferrières, Per-Gunner Wiklund, Jens Baumert, Barbara Thorand, Patrick Diemert, David‐Alexandre Trégouët, Christian Hengstenberg, Annette Peters, Alun Evans, Wolfgang Köenig, Jeanette Erdmann, Nilesh J. Samani, Kari Kuulasmaa, Heribert Schunkert
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0009134

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge
Cited by: 35
Author(s): Mika Gustafsson, Michael Hörnquist
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0029095

Phenotype Prediction Using Regularized Regression on Genetic Data in the DREAM5 Systems Genetics B Challenge
Cited by: 14
Author(s): Po‐Ru Loh, George Tucker, Bonnie Berger
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0145042

Comparison of Plasma and Urine Biomarker Performance in Acute Kidney Injury
Cited by: 70
Author(s): Gunnar Schley, Carmen Köberle, Ekaterina Manuilova, Sandra Rutz, Christian Förster, Michael Weyand, Ivan Formentini, Rosemarie Kientsch-Engel, Kai‐Uwe Eckardt, Carsten Willam
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0188149

Characterization of rubella-specific humoral immunity following two doses of MMR vaccine using proteome microarray technology
Cited by: 6
Author(s): Iana H. Haralambieva, Michael J. Gibson, Richard B. Kennedy, Inna G. Ovsyannikova, Nathaniel D. Warner, Diane E. Grill, Gregory A. Poland
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0133627

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging
Cited by: 87
Author(s): Chan C. Whiting, Janet Siebert, Aaron M. Newman, Hong Du, Ash A. Alizadeh, Jörg J. Goronzy, Cornelia M. Weyand, Eswar Krishnan, C. Garrison Fathman, Holden T. Maecker
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0249916

Sparse Poisson regression via mixed-integer optimization
Cited by: 2
Author(s): Hiroki Saishu, Kiyoshi Kudo, Yasunari Takano
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0178962

Explaining ethnic disparities in lung function among young adults: A pilot investigation
Cited by: 10
Author(s): Neil J. Saad, Jaymini Patel, Cosetta Minelli, Peter Burney
Software Mentions: 2
Published: about 9 years ago

10.1111/jcmm.15536

Large‐scale transcriptome profiles reveal robust 20‐signatures metabolic prediction models and novel role of G6PC in clear cell renal cell carcinoma
Cited by: 23
Author(s): Wenhao Xu, Yue Xu, Xi Tian, Aihetaimujiang Anwaier, Wangrui Liu, Jun Wang, Wenkai Zhu, Dalong Cao, Hong‐Kai Wang, Guohai Shi, Yuanyuan Qu, Hai‐Liang Zhang, Dingwei Ye
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0103322

Analyzing Genome-Wide Association Studies with an FDR Controlling Modification of the Bayesian Information Criterion
Cited by: 20
Author(s): Erich Dolejsi, Bernhard Bodenstorfer, Florian Frommlet
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0231609

Cytokine changes associated with the maternal immune activation (MIA) model of autism: A penalized regression approach
Cited by: 14
Author(s): Cristina Paraschivescu, Susana Barbosa, Thomas Lorivel, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0193871

Radiogenomics analysis identifies correlations of digital mammography with clinical molecular signatures in breast cancer
Cited by: 13
Author(s): Jose-Gerardo Tamez-Peña, Juan-Andrés Rodriguez-Rojas, Hugo Gómez-Rueda, Jose-Maria Celaya-Padilla, Roxana-Alicia Rivera-Prieto, Rebeca Palacios-Corona, Margarita Garza-Montemayor, Servando Cardona‐Huerta, Víctor Treviño
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0068071

Bayesian Mixture Models for Assessment of Gene Differential Behaviour and Prediction of pCR through the Integration of Copy Number and Gene Expression Data
Cited by: 0
Author(s): Filippo Trentini, Yuan Ji, Takayuki Inomata, Yuan Qi, Lajos Pusztai, Peter Müller
Software Mentions: 2
Published: about 13 years ago

10.1111/jcmm.16378

Identification of autophagy‐related long non‐coding RNA prognostic signature for breast cancer
Cited by: 29
Author(s): Qianxue Wu, Qing Li, Wenming Zhu, Xiang Zhang, Hongyuan Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-021-08523-y

Development and validation of a clinical prediction model for endocervical curettage decision-making in cervical lesions
Cited by: 4
Author(s): Yuanxing Li, Haiwei Luo, Xiu Zhang, Jianmei Chang, Yueyang Zhao, Jing Li, Dongyan Li, Wei Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0065380

Effects of Sample Size on Differential Gene Expression, Rank Order and Prediction Accuracy of a Gene Signature
Cited by: 46
Author(s): Cynthia Stretch, Sumsullah Khan, Nasimeh Asgarian, Roman Eisner, Saman Vaisipour, Sambasivarao Damaraju, Kathryn Graham, Oliver F. Bathe, Helen Steed, Russell Greiner, Vickie E. Baracos
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0205333

Factors associated with common mental health problems of humanitarian workers in South Sudan
Cited by: 25
Author(s): Hannah Strohmeier, Willem F. Scholte, Alastair Ager
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0218134

Selection and co-selection of antibiotic resistances among Escherichia coli by antibiotic use in primary care: An ecological analysis
Cited by: 32
Author(s): Koen B Pouwels, Berit Müller‐Pebody, Timo Smieszek, Susan Hopkins, Julie V. Robotham
Software Mentions: 2
Published: about 7 years ago

10.1016/j.jclinepi.2020.12.005

Penalization and shrinkage methods produced unreliable clinical prediction models especially when sample size was small
Cited by: 45
Author(s): Richard D Riley, Kym I E Snell, Glen P. Martin, Rebecca Whittle, Lucinda Archer, Matthew Sperrin, Gary S. Collins
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0029653

Expression Signature of IFN/STAT1 Signaling Genes Predicts Poor Survival Outcome in Glioblastoma Multiforme in a Subtype-Specific Manner
Cited by: 109
Author(s): Christine W. Duarte, Christopher D. Willey, Degui Zhi, Xiangqin Cui, Jacqueline J. Harris, Laura K. Vaughan, Tapan Mehta, Raymond O. McCubrey, Nikolai N. Khodarev, Ralph R. Weichselbaum, G. Yancey Gillespie
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0110451

Discovering Main Genetic Interactions with LABNet LAsso-Based Network Inference
Cited by: 4
Author(s): Francesco Gadaleta, Kristel Van Steen
Software Mentions: 2
Published: almost 12 years ago

10.3390/jcm4071498

Urinary MicroRNA Profiling Predicts the Development of Microalbuminuria in Patients with Type 1 Diabetes
Cited by: 77
Author(s): Christos Argyropoulos, Kai Wang, José F. Bernardo, Demetrius Ellis, Trevor J. Orchard, David J. Galas, John P. Johnson
Software Mentions: 2
Published: about 11 years ago

10.3390/jcm8040509

A Multivariate Evaluation of 25 Proximal and Distal Risk-Factors for Gambling-Related Harm
Cited by: 29
Author(s): Matthew Browne, Nerilee Hing, Alex Russell, Nancy Greer, Fiona Nicoll, Garry J. Smith
Software Mentions: 2
Published: over 7 years ago

10.3390/jcm8070993

Geospatial-Temporal and Demand Models for Opioid Admissions, Implications for Policy
Cited by: 3
Author(s): Lawrence V. Fulton, Zhijie Dong, F. Benjamin Zhan, Clemens Scott Kruse, Paula Stigler Granados
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0027683

Potential Biomarkers in Mouse Myocardium of Doxorubicin-Induced Cardiomyopathy: A Metabonomic Method and Its Application
Cited by: 59
Author(s): Guangguo Tan, Ziyang Lou, Wenting Liao, Zhenyu Zhu, Xin Dong, Wei Zhang, Wuhong Li, Yifeng Chai
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0146939

Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis
Cited by: 49
Author(s): Robert E. Tyx, Stephen B. Stanfill, Lisa M. Keong, Aidsa Rivera, Glen A. Satten, Clifford H. Watson
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0148195

Fusing Data Mining, Machine Learning and Traditional Statistics to Detect Biomarkers Associated with Depression
Cited by: 56
Author(s): Joanna F. Dipnall, Julie A. Pasco, Michael Berk, Lana J. Williams, Seetal Dodd, Felice N. Jacka, Denny Meyer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0227315

Radiomics signature for prediction of lateral lymph node metastasis in conventional papillary thyroid carcinoma
Cited by: 29
Author(s): Vivian Youngjean Park, Kyunghwa Han, Hye Jung Kim, Eun Jung Lee, Ji Hyun Youk, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0196038

Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots
Cited by: 2
Author(s): Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski
Software Mentions: 2
Published: over 8 years ago

10.3390/jpm11010008

Preoperative Predicting the WHO/ISUP Nuclear Grade of Clear Cell Renal Cell Carcinoma by Computed Tomography-Based Radiomics Features
Cited by: 9
Author(s): Claudia-Gabriela Moldovanu, Bianca Boca, Andrei Lebovici, Attila Tamas-Szora, Diana Feier, Nicolae Crişan, Iulia Andraș, Mircea Buruian
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0213258

Exploring the use of machine learning for risk adjustment: A comparison of standard and penalized linear regression models in predicting health care costs in older adults
Cited by: 37
Author(s): Hong Kan, Hadi Kharrazi, Hsien Yen Chang, Dave Bodycombe, K Lemke, Jonathan P. Weiner
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0160715

Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests
Cited by: 85
Author(s): Philip Zylstra, Ross A. Bradstock, Michael Bedward, Trent D. Penman, Michael Doherty, R. O. Weber, A. Malcolm Gill, Geoffrey J. Cary
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-88591-z

U-survival for prognostic prediction of disease progression and mortality of patients with COVID-19
Cited by: 4
Author(s): Janne J. Näppi, Tomoki Uemura, Chinatsu Watari, Tetsuo Hironaka, Tohru Kamiya, Hiroyuki Yoshida
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0241083

Predicting overdose among individuals prescribed opioids using routinely collected healthcare utilization data
Cited by: 7
Author(s): Jenny W Sun, Jessica M. Franklin, Kathryn Rough, Rishi Desai, Sonia Hernández–Dı́az, Krista F. Huybrechts, Brian T. Bateman
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-90367-4

Integrative nomogram of intratumoral, peritumoral, and lymph node radiomic features for prediction of lymph node metastasis in cT1N0M0 lung adenocarcinomas
Cited by: 7
Author(s): Sambit Das, Kewei Fang, Lishuai Xu, Bing Li, Xin Zhang, Hua-Yuan Yang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0250198

Characteristics of spirochetemic patients with a solitary erythema migrans skin lesion in Europe
Cited by: 3
Author(s): Vera Maraspin, Katarina Ogrinc, Tereza Rojko, Petra Bogovič, Eva Ružić‐Sabljić, Andrej Kastrin, Gary P. Wormser, Franc Strle
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-91169-4

Development of a prediction model for mortality and cardiovascular outcomes in older adults taking into account AZGP1
Cited by: 2
Author(s): Dörte Huscher, Natalie Ebert, Inga Soerensen-Zender, Nina Mielke, Elke Schaeffner, Roland Schmitt
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92362-1

Machine learning enhances the performance of short and long-term mortality prediction model in non-ST-segment elevation myocardial infarction
Cited by: 17
Author(s): Woojoo Lee, Joongyub Lee, Seoung Il Woo, Seung Kang Choi, Jang Whan Bae, Seungpil Jung, Myung Ho Jeong, Won Kyung Lee
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-93315-4

A new inflammatory parameter can predict delayed intracranial hemorrhage following ventriculoperitoneal shunt
Cited by: 2
Author(s): Shiwei Li, Hongcai Wang, Feng Li, Maosong Chen, Pandi Chen
Software Mentions: 2
Published: about 5 years ago

10.1021/acsomega.1c02223

New Formula for the Hydrogen-Bonding Hansen Component of Methanol, Ethanol, and <i>n</i>-Propanol for Non-ambient Conditions—Application in Gas Antisolvent Fractionation-Based Optical Resolution
Cited by: 3
Author(s): Máté Mihalovits, Márton Kőrösi, Edit Székely
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0160733

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data
Cited by: 31
Author(s): A. M. C. Chan, Martha T. Hamblin, Jean‐Luc Jannink
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-95818-6

Delta band activity contributes to the identification of command following in disorder of consciousness
Cited by: 5
Author(s): Gonzalo Rivera-Lillo, Emmanuel A. Stamatakis, Tristán A. Bekinschtein, David Menon, Srivas Chennu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-95963-y

Identification of preoperative predictors for acute postsurgical pain and for pain at three months after surgery: a prospective observational study
Cited by: 13
Author(s): R.L.M. van Boekel, Ewald M. Bronkhorst, Lilian Vloet, Monique A H Steegers, Kris Vissers
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0248746

Gene flow in commercial alfalfa (Medicago sativa subsp. sativa L.) seed production fields: Distance is the primary but not the sole influence on adventitious presence
Cited by: 6
Author(s): Sandya R. Kesoju, Matthew Kramer, Johanne Brunet, Stephanie L. Greene, Amelia Jordan, Ruth C. Martin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0072199

Measuring Visual Field Progression in the Central 10 Degrees Using Additional Information from Central 24 Degrees Visual Fields and ‘Lasso Regression’
Cited by: 17
Author(s): Ryo Asaoka
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0236957

A simple nomogram score for screening patients with type 2 diabetes to detect those with hypertension: A cross-sectional study based on a large community survey in China
Cited by: 7
Author(s): Mingyue Xue, Li Liu, Shuxia Wang, Yinxia Su, Kun Lv, Mingchen Zhang, Hua Yao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0150744

A Cross-Sectional Study of Water, Sanitation, and Hygiene-Related Risk Factors for Soil-Transmitted Helminth Infection in Urban School- and Preschool-Aged Children in Kibera, Nairobi
Cited by: 47
Author(s): Caitlin M. Worrell, Ryan E. Wiegand, Stephanie M. Davis, Kennedy Odero, Anna J. Blackstock, Victoria M. Cuéllar, Sammy M. Njenga, Joel M. Montgomery, Sharon L. Roy, LeAnne M. Fox
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0062471

FDG PET and MRI in Logopenic Primary Progressive Aphasia versus Dementia of the Alzheimer’s Type
Cited by: 96
Author(s): Ajay A Madhavan, Jennifer L. Whitwell, Stephen D. Weigand, Joseph R. Duffy, Edythe A. Strand, Mary M. Machulda, Nirubol Tosakulwong, Matthew L. Senjem, Jeffrey L. Gunter, Val J. Lowe, Ronald C. Petersen, Clifford R. Jack, Keith A. Josephs
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0123946

Developing a Prognostic Micro-RNA Signature for Human Cervical Carcinoma
Cited by: 31
Author(s): Christine How, Melania Pintilie, Jeff Bruce, Angela Bik‐Yu Hui, Blaise A. Clarke, Philip Wong, Shaoming Yin, Rui Yan, Daryl Waggott, Paul C. Boutros, Anthony Fyles, David W. Hedley, Richard P. Hill, Michael Milosevic, Fei‐Fei Liu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0154313

Molecular Predictors of Long-Term Survival in Glioblastoma Multiforme Patients
Cited by: 39
Author(s): Jie Lü, Matthew C. Cowperthwaite, Mark G. Burnett, Max Shpak
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0114885

Computational Pathology to Discriminate Benign from Malignant Intraductal Proliferations of the Breast
Cited by: 107
Author(s): Fei Dong, Humayun Irshad, Eunsun Oh, Melinda F. Lerwill, Elena F. Brachtel, Nicholas Jones, Nicholas W. Knoblauch, Laleh Montaser‐Kouhsari, Nicole B. Johnson, Luigi Rao, Beverly E. Faulkner-Jones, David C. Wilbur, Stuart J. Schnitt, Andrew H. Beck
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0238731

The interdependency structure in the Mexican stock exchange: A network approach
Cited by: 2
Author(s): Erick Treviño Aguilar
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0189508

Brain-to-brain hyperclassification reveals action-specific motor mapping of observed actions in humans
Cited by: 11
Author(s): Д. А. Смирнов, Fanny Lachat, Tomi Peltola, Juha M. Lahnakoski, Olli-Pekka Koistinen, Enrico Glerean, Aki Vehtari, Riitta Hari, Mikko Sams, Lauri Nummenmaa
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0141869

Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets
Cited by: 14
Author(s): Hee-Won Park, Seiya Imoto, Satoru Miyano
Software Mentions: 2
Published: almost 11 years ago

10.18632/aging.101445

Age prediction of children and adolescents aged 6-17 years: an epigenome-wide analysis of DNA methylation
Cited by: 19
Author(s): Chunxiao Li, Wenjing Gao, Ying Gao, Yu Chen, Jun Lv, LV Ruo-Ran, Jiali Duan, Yingxian Sun, Guo Xiang-hui, Weihua Cao, Liming Li
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.102064

Integrated tumor stromal features of hepatocellular carcinoma reveals two distinct subtypes with prognostic/predictive significance
Cited by: 4
Author(s): Wei Li, Jun Han, Kefei Yuan, Hong Wu
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0189181

DNA methylation levels in candidate genes associated with chronological age in mammals are not conserved in a long-lived seabird
Cited by: 6
Author(s): Ricardo De Paoli-Iseppi, Andrea M. Polanowski, Clive R. McMahon, Bruce E. Deagle, Joanne L. Dickinson, Mark A. Hindell, Simon Jarman
Software Mentions: 2
Published: over 8 years ago

10.1002/sim.7586

A multiple-model generalisation of updating clinical prediction models
Cited by: 11
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0106664

Detecting Gunshots Using Wearable Accelerometers
Cited by: 12
Author(s): Charles Loeffler
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pntd.0005295

Forecasting Zika Incidence in the 2016 Latin America Outbreak Combining Traditional Disease Surveillance with Search, Social Media, and News Report Data
Cited by: 151
Author(s): Sarah F. McGough, John S. Brownstein, Joseph E. Hawkins, Mauricio Santillana
Software Mentions: 2
Published: over 9 years ago

10.1007/s00066-021-01781-6

Early morbidity and dose–volume effects in definitive radiochemotherapy for locally advanced cervical cancer: a prospective cohort study covering modern treatment techniques
Cited by: 6
Author(s): Yvette Seppenwoolde, K. Majercakova, Martin Buschmann, E. Dörr, Alina Sturdza, Maximilian Schmid, Richard Pötter, Dietmar Georg
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pmed.1001759

The kSORT Assay to Detect Renal Transplant Patients at High Risk for Acute Rejection: Results of the Multicenter AART Study
Cited by: 146
Author(s): Silke Roedder, Tara K. Sigdel, Nathan Salomonis, Szu‐Chuan Hsieh, Hong Dai, Oriol Bestard, Diana Metes, Adriana Zeevi, Albin Gritsch, Jennifer A. Cheeseman, Camila Macedo, Ram Peddy, Mara Medeiros-Domingo, Flavio Vincenti, Nancy Asher, Oscar Salvatierra, Ron Shapiro, Allan D. Kirk, Elaine F. Reed, Minnie M. Sarwal
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pmed.1001743

Association of Medical Students' Reports of Interactions with the Pharmaceutical and Medical Device Industries and Medical School Policies and Characteristics: A Cross-Sectional Study
Cited by: 11
Author(s): James S. Yeh, Kirsten Austad, Jessica M. Franklin, Susan Chimonas, Eric G. Campbell, Jerry Avorn, Aaron S. Kesselheim
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pmed.1002108

Pancreatic Cancer Surgical Resection Margins: Molecular Assessment by Mass Spectrometry Imaging
Cited by: 74
Author(s): Lívia S. Eberlin, Katherine Margulis, Planell-Mendez Ivette, Richard N. Zare, Robert Tibshirani, Teri A. Longacre, Mehdi Jalali, Jeffrey A. Norton, George A. Poultsides
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12859-020-03911-w

Compositional zero-inflated network estimation for microbiome data
Cited by: 6
Author(s): Min Jin Ha, Junghi Kim, Jessica Galloway-Peña, Kim Anh, Christine B. Peterson
Software Mentions: 2
Published: over 5 years ago

10.1111/1759-7714.13447

Relationship between the efficacy of immunotherapy and characteristics of specific tumor mutation genes in non‐small cell lung cancer patients
Cited by: 16
Author(s): Peng Song, Dongliang Yang, Hanping Wang, Xiaoxia Cui, Xiaoyan Si, Xiaolin Zhang, Li Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1005147

Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control
Cited by: 59
Author(s): Ophir Shalem, Eilon Sharon, Shai Lubliner, Ifat Regev, Maya Lotan-Pompan, Zohar Yakhini, Eran Segal
Software Mentions: 2
Published: over 11 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607