cran: glmnet | Projects | Ecosyste.ms: Papers

10.1002/sim.7586

A multiple-model generalisation of updating clinical prediction models
Cited by: 11
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00066-021-01781-6

Early morbidity and dose–volume effects in definitive radiochemotherapy for locally advanced cervical cancer: a prospective cohort study covering modern treatment techniques
Cited by: 6
Author(s): Yvette Seppenwoolde, K. Majercakova, Martin Buschmann, E. Dörr, Alina Sturdza, Maximilian Schmid, Richard Pötter, Dietmar Georg
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-020-03911-w

Compositional zero-inflated network estimation for microbiome data
Cited by: 6
Author(s): Min Jin Ha, Junghi Kim, Jessica Galloway-Peña, Kim Anh, Christine B. Peterson
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12984-020-00678-2

Transfer of motor skill between virtual reality viewed using a head-mounted display and conventional screen environments
Cited by: 13
Author(s): Julia M. Juliano, Sook‐Lei Liew
Software Mentions: 2
Published: over 4 years ago

10.1111/1759-7714.13447

Relationship between the efficacy of immunotherapy and characteristics of specific tumor mutation genes in non‐small cell lung cancer patients
Cited by: 16
Author(s): Peng Song, Dongliang Yang, Hanping Wang, Xiaoxia Cui, Xiaoyan Si, Xiaolin Zhang, Li Zhang
Software Mentions: 2
Published: over 4 years ago

10.1038/s41398-021-01362-2

Plasma lipidome is dysregulated in Alzheimer’s disease and is associated with disease risk genes
Cited by: 44
Author(s): Yue Liu, Anbupalam Thalamuthu, Karen A. Mather, John D. Crawford, Marina Ulanova, Matthew Wai Kin Wong, Russell Pickford, Perminder S. Sachdev, Nady Braidy
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-14-5

Random generalized linear model: a highly accurate and interpretable ensemble predictor
Cited by: 92
Author(s): Song Lin, Peter Langfelder, Steve Horvath
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12859-017-1872-9

Identification of gene pairs through penalized regression subject to constraints
Cited by: 6
Author(s): Rex Shen, Lan Luo, Hui Jiang
Software Mentions: 2
Published: about 7 years ago

10.1186/s40246-019-0228-0

An embedded method for gene identification problems involving unwanted data heterogeneity
Cited by: 0
Author(s): Meng Lü
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-018-2403-z

Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection
Cited by: 29
Author(s): Pierre Mahé, Maud Tournoud
Software Mentions: 2
Published: about 6 years ago

10.7150/ijbs.38846

Prognostic values of a novel multi-mRNA signature for predicting relapse of cholangiocarcinoma
Cited by: 12
Author(s): Han Guo, Jie Cai, Xuan Wang, Bingrui Wang, Fang Wang, Xiang Li, Xiaoye Qu, Xiangdong Kong, Yueqiu Gao, Hailong Wu, Xuehua Sun, Qiang Xia, Xiaoni Kong
Software Mentions: 2
Published: almost 5 years ago

10.1017/jns.2021.36

Prediction of type 2 diabetes mellitus based on nutrition data
Cited by: 2
Author(s): Andreas Katsimpris, Aboulmaouahib Brahim, Wolfgang Rathmann, A Peters, Konstantin Strauch, Antònia Flaquer
Software Mentions: 2
Published: almost 4 years ago

10.1002/ijc.29099

Fine mapping of genetic susceptibility loci for melanoma reveals a mixture of single variant and multiple variant regions
Cited by: 30
Author(s): Jennifer Barrett, John Taylor, Chloe J Bright, Mark Harland, Alison M. Dunning, Lars A. Akslen, Per Arne Andresen, Marie-Françoise Avril, Esther Azizi, Giovanna Bianchi Scarrà, Myriam Brossard, Kevin M. Brown, Tadeusz Dębniak, David E. Elder, Eitan Friedman, Paola Ghiorzo, Elizabeth M. Gillanders, Nelleke A. Gruis, Johan Hansson, Per Helsing, Marko Hočevar, Veronica Höiom, Christian Ingvar, Maria Teresa Landi, Julie Lang, G.M. Lathrop, Jan Lubiński, Rona M. MacKie, Anders Molven, Srdjan Novaković, Håkan Olsson, Susana Puig, Joan Antón Puig-Butillé, Nienke van der Stoep, Remco van Doorn, Wilberg van Workum, Alisa M. Goldstein, Peter A. Kanetsky, Paul D.P. Pharoah, Florence Demenais, Nicholas K. Hayward, Julia Newton-Bishop, D. Timothy Bishop, Mark M. Iles
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-14-S12-S1

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures
Cited by: 46
Author(s): Mohammed Alshalalfa, Reda Alhajj
Software Mentions: 2
Published: about 11 years ago

10.3389/fgene.2019.00899

On the Use of the Pearson Correlation Coefficient for Model Evaluation in Genome-Wide Prediction
Cited by: 32
Author(s): Patrik Waldmann
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.533628

Six-lncRNA Immune Prognostic Signature for Cervical Cancer
Cited by: 34
Author(s): Qian Chen, Lang Hu, Dongping Huang, Kaihua Chen, Xiaoqiang Qiu, Bingqing Qiu
Software Mentions: 2
Published: about 4 years ago

10.3390/e22050543

Prediction and Variable Selection in High-Dimensional Misspecified Binary Classification
Cited by: 5
Author(s): Konrad Furmańczyk, Wojciech Rejchel
Software Mentions: 2
Published: over 4 years ago

10.1186/s12982-016-0047-x

Dimension reduction and shrinkage methods for high dimensional disease risk scores in historical data
Cited by: 17
Author(s): Hiraku Kumamaru, Sebastian Schneeweiß, Robert J. Glynn, Soko Setoguchi, Joshua J. Gagne
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.2892

Are whooping cranes destined for extinction? Climate change imperils recruitment and population growth
Cited by: 8
Author(s): Matthew J. Butler, Kristine L. Metzger, Grant Harris
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.5072

The habitat functional response links seasonal third‐order selection to second‐order landscape characteristics
Cited by: 9
Author(s): Kelsey E. Paolini, Bronson K. Strickland, Jessica L. Tegt, Kurt C. VerCauteren, Garrett M. Street
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00673

Identification of a Six-lncRNA Signature With Prognostic Value for Breast Cancer Patients
Cited by: 6
Author(s): Erjie Zhao, Yujia Lan, Fei Quan, Xiaojing Zhu, Aditya Suru, Linyun Wan, Jiu Hua Xu, Jing Hu
Software Mentions: 2
Published: over 4 years ago

10.1242/dmm.028175

Heterozygous <i>Vangl2</i> <i>Looptail</i> mice reveal novel roles for the planar cell polarity pathway in adult lung homeostasis and repair
Cited by: 24
Author(s): Thanushiyan Poobalasingam, Laura L. Yates, Simone A. Walker, Miguel Pereira, Nina Groß, Akmol Ali, Maria Kolatsi-Joannou, Marjo Riitta Järvelin, Juha Pekkanen, Eugenia Papakrivopoulou, David A. Long, Mark Griffiths, Darcy E. Wagner, Mélanie Königshoff, Matthew Hind, Cosetta Minelli, Clare M. Lloyd, Charlotte Dean
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnhum.2017.00140

EEG Error Prediction as a Solution for Combining the Advantages of Retrieval Practice and Errorless Learning
Cited by: 3
Author(s): Ellyn A. Riley, Dennis J. McFarland
Software Mentions: 2
Published: over 7 years ago

10.3390/diagnostics11050880

Automated Assessment of Thoracic-Abdominal Asynchrony in Patients with Morquio Syndrome
Cited by: 1
Author(s): Madhavi Vedula Ratnagiri, Yan Zhu, Tariq Rahman, Mary C. Theroux, Shunji Tomatsu, Thomas H. Shaffer
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2012.00320

From biomarkers to a clue of biology: a computation-aided perspective of immune gene expression profiles in human type 1 diabetes
Cited by: 6
Author(s): Dongmei Han, Xiaodong Cai, Ji Wen, Norma S. Kenyon, Zhibin Chen
Software Mentions: 2
Published: almost 13 years ago

10.3389/fimmu.2018.00257

Functional and Phenotypic Changes of Natural Killer Cells in Whole Blood during Mycobacterium tuberculosis Infection and Disease
Cited by: 36
Author(s): Mathieu Garand, Martin R. Goodier, Olumuyiwa Owolabi, Simon Donkor, Beate Kampmann, Jayne S. Sutherland
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00125-021-05474-8

Greater daily glucose variability and lower time in range assessed with continuous glucose monitoring are associated with greater aortic stiffness: The Maastricht Study
Cited by: 16
Author(s): Yuri D. Foreman, William P T M van Doorn, Nicolaas C. Schaper, Marleen M.J. van Greevenbroek, Carla Kallen, Ronald M.A. Henry, Annemarie Koster, Simone J. P. M. Eussen, Anke Wesselius, Koen D. Reesink, Miranda T. Schram, Pieter C. Dagnelie, Abraham A. Kroon, Martijn C.G.J. Brouwers, Coen D. A. Stehouwer
Software Mentions: 2
Published: over 3 years ago

10.3390/curroncol28040255

Clinicopathological Characteristics and Prognostic Factors in Ovarian Metastases from Right- and Left-Sided Colorectal Cancer
Cited by: 1
Author(s): Ondřej Kubeček, Ján Laco, Jiří Špaček, Alena Kubečková, Jiřı́ Petera, Iva Krulichova, Aleš Bezrouk, Stanislav Filip, J Kopecký
Software Mentions: 2
Published: over 3 years ago

10.7759/cureus.3426

Multiparametric Magnetic Resonance Imaging in the Assessment of Primary Brain Tumors Through Radiomic Features: A Metric for Guided Radiation Treatment Planning
Cited by: 12
Author(s): Edward Florez, Todd A. Nichols, Ellen Parker, Seth T. Lirette, Candace M. Howard, Ali Fatemi
Software Mentions: 2
Published: about 6 years ago

10.1186/s13054-018-2215-6

Development and internal validation of the multivariable CIPHER (Collaborative Integrated Pregnancy High-dependency Estimate of Risk) clinical risk prediction model
Cited by: 13
Author(s): Beth Payne, Helen Ryan, Jeffrey Bone, Laura A. Magee, A. Aarvold, J. Mark Ansermino, Zulfiqar A Bhutta, M. Bowen, José Guilherme Cecatti, Cynthia Chazotte, Tim M. Crozier, Anne-Cornélie J. M. Pont, Oktay Demirkıran, Tao Duan, Marlot C. Kallen, Wessel Ganzevoort, Michael Geary, Dena Goffman, Jennifer A. Hutcheon, K.S. Joseph, Stephen E. Lapinsky, Isam Lataifeh, Jing Li, Sarka Liskonova, Emily M. Hamel, Fionnuala M. McAuliffe, Colm O’Herlihy, Ben Willem J. Mol, P. G. R. Seaward, Ramzy Edward Tadros, Türkan Toğal, Rahat Qureshi, Ugochinyere Vivian Ukah, Daniela N. Vásquez, Euan M. Wallace, Paul J. Yong, Vivian Zhou, Keith R. Walley, Peter von Dadelszen
Software Mentions: 2
Published: about 6 years ago

10.1016/j.csbj.2019.04.004

Interrelations of Sphingolipid and Lysophosphatidate Signaling with Immune System in Ovarian Cancer
Cited by: 19
Author(s): Anastasia Meshcheryakova, Martin Svoboda, Markus Jaritz, Felicitas Mungenast, Martina Salzmann, Dietmar Pils, Dan Cacsire Castillo‐Tong, G. Hager, Andrea Wolf, Elena Ioana Braicu, Jalid Sehouli, Sandrina Lambrechts, Ignace Vergote, Sven Mahner, Peter Birner, Philip Zimmermann, David N. Brindley, Georg Heinze, Robert Zeillinger
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13075-019-1996-6

Pneumocystis pneumonia in patients with rheumatic diseases receiving prolonged, non-high-dose steroids—clinical implication of primary prophylaxis using trimethoprim–sulfamethoxazole
Cited by: 48
Author(s): Jung Won Park, Jeffrey R. Curtis, Min Jung Kim, Eun Bong Lee, Yeong Wook Song, Eun Bong Lee
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-019-0324-7

Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
Cited by: 40
Author(s): Daichi Shigemizu, Shintaro Akiyama, Yuya Asanomi, Keith A. Boroevich, Alok Sharma, Tatsuhiko Tsunoda, Kana Matsukuma, Makiko Ichikawa, Hiroko Sudo, Satoko Takizawa, Takashi Sakurai, Kouichi Ozaki, Takahiro Ochiya, Shumpei Niida
Software Mentions: 2
Published: over 5 years ago

10.3389/fnint.2014.00064

Neuronal oscillations form parietal/frontal networks during contour integration
Cited by: 20
Author(s): Marta Castellano, Michael Plöchl, Raül Vicente, Gordon Pipa
Software Mentions: 2
Published: over 10 years ago

10.3389/fmed.2021.705202

Association Between the Health Locus of Control and Medication Adherence: An Observational, Cross-Sectional Study in Primary Care
Cited by: 8
Author(s): Hanna-Maria E. Gerland, Tino Prell
Software Mentions: 2
Published: over 3 years ago

10.3389/fmed.2021.627416

Novel Multiparametric Nomogram for Overall Survival Prediction in Complicated Intra-Abdominal Infection: A Multicenter Study in China
Cited by: 1
Author(s): Sisi Huang, Limin Chen, Jiao Liu, Sheng Zhang, Lidi Zhang, Zhenliang Wen, Yizhu Chen, Dechang Chen
Software Mentions: 2
Published: over 3 years ago

10.1002/ctm2.189

Insights into the prognosis of lipidomic dysregulation for death risk in patients with coronary artery disease
Cited by: 13
Author(s): Min Qin, Qian Zhu, Wen‐Ter Lai, Qin Ma, Chen Liu, Xiaoping Chen, Yuelin Zhang, Zixian Wang, Hui Cai, Hong Yan, He-Ping Lei, Shuyao Zhang, Xuekui Dong, Hong Wang, Min Huang, Qizhou Lian, Shilong Zhong
Software Mentions: 2
Published: about 4 years ago

10.1177/2040206618762985

Frequent cross-resistance to rilpivirine among subtype C HIV-1 from first-line antiretroviral therapy failures in South Africa
Cited by: 5
Author(s): Kerri J. Penrose, Chanson J. Brumme, Maritsa Scoulos-Hanson, Kristen A. Hamanishi, Kelley C. Gordon, Raquel Viana, Carole L. Wallis, P. Richard Harrigan, John W. Mellors, Urvi M. Parikh
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12014-018-9216-y

A two-step strategy for identification of plasma protein biomarkers for endometrial and ovarian cancer
Cited by: 17
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmed.2021.689871

Development of a Novel Simple Model to Predict Mortality in Patients With Systemic Lupus Erythematosus Admitted to the Intensive Care Unit
Cited by: 2
Author(s): Jin Guo, Zhen Huang, Mengling Huang, Yayi He, Bing Han, Ning Ma, Zujiang Yu, Shengyun Liu, Zhigang Ren
Software Mentions: 2
Published: over 3 years ago

10.3390/antiox10071043

Lipid Peroxidation Assessment in Preclinical Alzheimer Disease Diagnosis
Cited by: 12
Author(s): Carmen Peña-Bautista, Lourdes Álvarez-Sánchez, I. Ferrer, Marina López-Nogueroles, Antonio José Cañada-Martínez, Camille Oger, Jean‐Marie Galano, Thierry Durand, Miquel Baquero, Consuelo Cháfer-Pericás
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2018.03112

A Phylogeny-Regularized Sparse Regression Model for Predictive Modeling of Microbial Community Data
Cited by: 19
Author(s): Jian Xiao, Li Chen, Yue Yu, Xianyang Zhang, Jun Chen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13148-016-0260-z

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy
Cited by: 25
Author(s): Milan S. Geybels, Jonathan L. Wright, Marina Bibikova, Brandy Klotzle, Jie Fan, Shanshan Zhao, Ziding Feng, Elaine A. Ostrander, Daniel W. Lin, Peter S. Nelson, Janet L. Stanford
Software Mentions: 2
Published: about 8 years ago

10.1186/s13148-021-01174-7

Investigating the DNA methylation profile of e-cigarette use
Cited by: 7
Author(s): Rebecca C Richmond, Carlos Sillero‐Rejon, Jasmine N Khouja, Claire Prince, Alexander G. Board, Gemma C Sharp, Matthew Suderman, Caroline L Relton, Marcus R. Munafò, Suzanne H. Gage
Software Mentions: 2
Published: about 3 years ago

10.1186/s13148-019-0730-1

Statistical predictions with glmnet
Cited by: 352
Author(s): Solveig Engebretsen, Jon Bohlin
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2021.675193

A Novel Ferroptosis-Related Biomarker Signature to Predict Overall Survival of Esophageal Squamous Cell Carcinoma
Cited by: 22
Author(s): Jiahang Song, Liu Yan-hu, Xiang Gao, Xun Zhang, Wenda Yu, Qingguo Li
Software Mentions: 2
Published: over 3 years ago

10.1155/2019/9507193

Cloud-Based Brain Magnetic Resonance Image Segmentation and Parcellation System for Individualized Prediction of Cognitive Worsening
Cited by: 4
Author(s): Ryo Sakamoto, Christopher Marano, Michael I. Miller, Constantine G. Lyketsos, Yue Li, Susumu Mori, Kenichi Oishi, Alzheimer's Disease Neuroimaging Initiative ADNI
Software Mentions: 2
Published: almost 6 years ago

10.3390/cells8050456

CD4+/CD45RO+: A Potential Biomarker of the Clinical Response to Glatiramer Acetate
Cited by: 0
Author(s): Martin Vališ, Lukáš Sobíšek, Oldřich Vyšata, Blanka Klímová, Ctirad Andrýs, Doris Vokurková, J Masopust, Zbyšek Pavelek
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.10975

The 3′UTR signature defines a highly metastatic subgroup of triple-negative breast cancer
Cited by: 25
Author(s): Lei Wang, Xin Hu, Peng Wang, Zhi Ming Shao
Software Mentions: 2
Published: over 8 years ago

10.1080/07853890.2020.1868564

Clinical and inflammatory features based machine learning model for fatal risk prediction of hospitalized COVID-19 patients: results from a retrospective cohort study
Cited by: 84
Author(s): Xin Guan, Bo Zhang, Ming Fu, Mengying Li, Yuan Xu, Yaowu Zhu, Jing Peng, Huan Guo, Yanjun Lu
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers13030392

Radiomics Features of 18F-Fluorodeoxyglucose Positron-Emission Tomography as a Novel Prognostic Signature in Colorectal Cancer
Cited by: 9
Author(s): Jeonghyun Kang, Jae Hoon Lee, Hye Sun Lee, Eun Suk Cho, Eun Jung Park, Seung Hyuk Baik, Kang Young Lee, Chihyun Park, Yunku Yeu, Jean R. Clemenceau, Sunho Park, Hongming Xu, Changjin Hong, Tae Hyun Hwang
Software Mentions: 2
Published: almost 4 years ago

10.1002/acn3.51016

Self‐reported rates of impulsivity in Parkinson’s Disease
Cited by: 9
Author(s): Megan Aumann, Adam Stark, Shelby Hughes, Ya Chen Lin, Hakmook Kang, Elise Bradley, David H. Zald, Daniel O. Claassen
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers12113471

Construction of a Novel Multigene Panel Potently Predicting Poor Prognosis in Patients with Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Xiaozeng Lin, Anil Kapoor, Yan Gu, Mathilda Jing Chow, Jingyi Peng, Pierre Major, Damu Tang
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers12061432

Association of a CT-Based Clinical and Radiomics Score of Non-Small Cell Lung Cancer (NSCLC) with Lymph Node Status and Overall Survival
Cited by: 32
Author(s): Francesca Botta, Sara Raimondi, Lisa Rinaldi, Federica Bellerba, Federica Corso, Vincenzo Bagnardi, Daniela Origgi, Rocco Minelli, Giovanna Pitoni, Francesco Petrella, Lorenzo Spaggiari, Alessio Giuseppe Morganti, Filippo Del Grande, Massimo Bellomi, Stefania Rizzo
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers12082071

Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways
Cited by: 30
Author(s): Patrícia P. Reis, Sandra A. Drigo, Robson Francisco Carvalho, Rainer Marco López Lapa, Tainara F. Felix, Devalben Patel, Dangxiao Cheng, Melania Pintilie, Geoffrey Liu, Ming‐Sound Tsao
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0106985

Generalized Linear Model for Mapping Discrete Trait Loci Implemented with LASSO Algorithm
Cited by: 4
Author(s): Jun Xing, Huijiang Gao, Yang Wu, Yani Wu, Hongwang Li, Runqing Yang
Software Mentions: 2
Published: about 10 years ago

10.2196/22060

Association Between Public Knowledge About COVID-19, Trust in Information Sources, and Adherence to Social Distancing: Cross-Sectional Survey
Cited by: 156
Author(s): Ilona Fridman, Nicole Lucas, Debra Henke, Christina K. Zigler
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0132745

Pro-Inflammatory Cytokines Predict Relapse-Free Survival after One Month of Interferon-α but Not Observation in Intermediate Risk Melanoma Patients
Cited by: 9
Author(s): Ahmad A. Tarhini, Yan Lin, Haris Zahoor, Yongli Shuai, Lisa H. Butterfield, Steven Ringquist, Helen Gogas, Cindy Sander, Sandra Lee, Sanjiv S. Agarwala, John M. Kirwood
Software Mentions: 2
Published: over 9 years ago

10.3389/fneur.2020.00248

Parkinson's Disease Diagnosis Using Neostriatum Radiomic Features Based on T2-Weighted Magnetic Resonance Imaging
Cited by: 21
Author(s): Panshi Liu, Han Wang, Shilei Zheng, Fan Zhang, Xianglin Zhang
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.102064

Integrated tumor stromal features of hepatocellular carcinoma reveals two distinct subtypes with prognostic/predictive significance
Cited by: 4
Author(s): Wei Li, Jun Han, Kefei Yuan, Hong Wu
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2021.722231

The Corticospinal Excitability Can Be Predicted by Spontaneous Electroencephalography Oscillations
Cited by: 2
Author(s): Guiyuan Cai, Manfeng Wu, Qi Ding, Tuo Lin, Wanqi Li, Yinghua Jing, Hongying Chen, Huiting Cai, Ti‐Fei Yuan, Gelin Xu, Yue Lan
Software Mentions: 2
Published: about 3 years ago

10.3389/fnins.2016.00344

Bootstrap Enhanced Penalized Regression for Variable Selection with Neuroimaging Data
Cited by: 34
Author(s): Samantha V. Abram, Nathaniel E. Helwig, Craig Moodie, Colin G. DeYoung, Angus W. MacDonald, Niels G. Waller
Software Mentions: 2
Published: over 8 years ago

10.3389/fnins.2017.00646

Local Fields in Human Subthalamic Nucleus Track the Lead-up to Impulsive Choices
Cited by: 12
Author(s): J. M. Pearson, Patrick Hickey, Shivanand P. Lad, Michael L. Platt, Dennis A. Turner
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0183228

Metabolite patterns predicting sex and age in participants of the Karlsruhe Metabolomics and Nutrition (KarMeN) study
Cited by: 141
Author(s): M Rist, Alexander Röth, Lara Frommherz, Christoph H. Weinert, Ralf Krüger, Benedikt Merz, Diana Bunzel, Carina Mack, Björn Egert, Achim Bub, Benjamin Görling, Pavleta Tzvetkova, Burkhard Luy, Ingrid Hoffmann, Sabine E. Kulling, Bernhard Watzl
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0121295

Development and Validation of a Risk Score for Predicting Death after Pneumonectomy
Cited by: 7
Author(s): Seyer Safi, Axel Benner, Janos Walloschek, María Renner, Jan op den Winkel, Thomas Muley, Konstantina Storz, Hendrik Dienemann, Hans Hoffmann, Thomas Schneider
Software Mentions: 2
Published: over 9 years ago

10.3389/fnins.2018.01045

Dual-Model Radiomic Biomarkers Predict Development of Mild Cognitive Impairment Progression to Alzheimer’s Disease
Cited by: 39
Author(s): Hucheng Zhou, Jiehui Jiang, Jiaying Lu, Min Wang, Huiwei Zhang, Chuantao Zuo, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnins.2012.00115

Discovery and replication of gene influences on brain structure using LASSO regression
Cited by: 89
Author(s): Omid Kohannim
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0034157

Metabonomic Profiles Delineate the Effect of Traditional Chinese Medicine Sini Decoction on Myocardial Infarction in Rats
Cited by: 78
Author(s): Guangguo Tan, Wenting Liao, Xin Dong, Genjing Yang, Zhenyu Zhu, Wuhong Li, Yifeng Chai, Ziyang Lou
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0203133

The proteomic and metabolomic characterization of exercise-induced sweat for human performance monitoring: A pilot investigation
Cited by: 31
Author(s): Sean W. Harshman, Rhonda L. Pitsch, Zachary K Smith, Maegan L. O’Connor, Brian Geier, Anthony Qualley, Nicole M. Schaeublin, Molly Voelz Fischer, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0040922

Genetic Markers Enhance Coronary Risk Prediction in Men: The MORGAM Prospective Cohorts
Cited by: 83
Author(s): Maria Hughes, Olli Saarela, Jan Stritzke, Frank Kee, Kaisa Silander, Norman Klopp, Jukka Kontto, Juha Karvanen, Christina Willenborg, Veikko Salomaa, Jarmo Virtamo, Philippe Amouyel, Dominique Arveiler, Jean Ferrières, Per-Gunner Wiklund, Jens Baumert, Barbara Thorand, Patrick Diemert, David‐Alexandre Trégouët, Christian Hengstenberg, Annette Peters, Alun Evans, Wolfgang Köenig, Jeanette Erdmann, Nilesh J. Samani, Kari Kuulasmaa, Heribert Schunkert
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0009134

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge
Cited by: 35
Author(s): Mika Gustafsson, Michael Hörnquist
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0029095

Phenotype Prediction Using Regularized Regression on Genetic Data in the DREAM5 Systems Genetics B Challenge
Cited by: 14
Author(s): Po‐Ru Loh, George Tucker, Bonnie Berger
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0145042

Comparison of Plasma and Urine Biomarker Performance in Acute Kidney Injury
Cited by: 70
Author(s): Gunnar Schley, Carmen Köberle, Ekaterina Manuilova, Sandra Rutz, Christian Förster, Michael Weyand, Ivan Formentini, Rosemarie Kientsch-Engel, Kai‐Uwe Eckardt, Carsten Willam
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0188149

Characterization of rubella-specific humoral immunity following two doses of MMR vaccine using proteome microarray technology
Cited by: 6
Author(s): Iana H. Haralambieva, Michael J. Gibson, Richard B. Kennedy, Inna G. Ovsyannikova, Nathaniel D. Warner, Diane E. Grill, Gregory A. Poland
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0133627

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging
Cited by: 87
Author(s): Chan C. Whiting, Janet Siebert, Aaron M. Newman, Hong Du, Ash A. Alizadeh, Jörg J. Goronzy, Cornelia M. Weyand, Eswar Krishnan, C. Garrison Fathman, Holden T. Maecker
Software Mentions: 2
Published: over 9 years ago

10.3390/ijerph17239027

Interaction Effects of Air Pollution and Climatic Factors on Circulatory and Respiratory Mortality in Xi’an, China between 2014 and 2016
Cited by: 11
Author(s): Kingsley Katleho Mokoena, Crystal Jane Ethan, Yan Yu, Asenso Theophilus Quachie
Software Mentions: 2
Published: almost 4 years ago

10.2196/mhealth.9236

Development and Evaluation of a Mobile Personalized Blood Glucose Prediction System for Patients With Gestational Diabetes Mellitus
Cited by: 35
Author(s): Evgenii Pustozerov, Polina Popova, Aleksandra Tkachuk, Yana Bolotko, Z. M. Yuldashev, Elena Grineva
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0249916

Sparse Poisson regression via mixed-integer optimization
Cited by: 2
Author(s): Hiroki Saishu, Kiyoshi Kudo, Yasunari Takano
Software Mentions: 2
Published: over 3 years ago

10.2196/16733

Prediction Model for Timing of Death in Potential Donors After Circulatory Death (DCD III): Protocol for a Multicenter Prospective Observational Cohort Study
Cited by: 3
Author(s): Angela M M Kotsopoulos, Piet Vos, Nichon Jansen, Ewald M. Bronkhorst, Johannes G. van der Hoeven, Wilson F. Abdo
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0178962

Explaining ethnic disparities in lung function among young adults: A pilot investigation
Cited by: 10
Author(s): Neil J. Saad, Jaymini Patel, Cosetta Minelli, Peter Burney
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0103322

Analyzing Genome-Wide Association Studies with an FDR Controlling Modification of the Bayesian Information Criterion
Cited by: 20
Author(s): Erich Dolejsi, Bernhard Bodenstorfer, Florian Frommlet
Software Mentions: 2
Published: over 10 years ago

10.1186/s40425-016-0179-0

Validation of biomarkers to predict response to immunotherapy in cancer: Volume II — clinical validation and regulatory considerations
Cited by: 85
Author(s): Kevin K. Dobbin, Alessandra Cesano, John Alvarez, Rachael E. Hawtin, Sylvia Janetzki, Ilan R. Kirsch, Giuseppe Masucci, Paul B. Robbins, Senthamil R. Selvan, Howard Streicher, Jenny Zhang, Lisa H. Butterfield, Magdalena Thurin
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0231609

Cytokine changes associated with the maternal immune activation (MIA) model of autism: A penalized regression approach
Cited by: 14
Author(s): Cristina Paraschivescu, Susana Barbosa, Thomas Lorivel, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0193871

Radiogenomics analysis identifies correlations of digital mammography with clinical molecular signatures in breast cancer
Cited by: 13
Author(s): Jose-Gerardo Tamez-Peña, Juan-Andrés Rodriguez-Rojas, Hugo Gómez-Rueda, Jose-Maria Celaya-Padilla, Roxana-Alicia Rivera-Prieto, Rebeca Palacios-Corona, Margarita Garza-Montemayor, Servando Cardona‐Huerta, Víctor Treviño
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0068071

Bayesian Mixture Models for Assessment of Gene Differential Behaviour and Prediction of pCR through the Integration of Copy Number and Gene Expression Data
Cited by: 0
Author(s): Filippo Trentini, Yuan Ji, Takayuki Inomata, Yuan Qi, Lajos Pusztai, Peter Müller
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0065380

Effects of Sample Size on Differential Gene Expression, Rank Order and Prediction Accuracy of a Gene Signature
Cited by: 46
Author(s): Cynthia Stretch, Sumsullah Khan, Nasimeh Asgarian, Roman Eisner, Saman Vaisipour, Sambasivarao Damaraju, Kathryn Graham, Oliver F. Bathe, Helen Steed, Russell Greiner, Vickie E. Baracos
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0205333

Factors associated with common mental health problems of humanitarian workers in South Sudan
Cited by: 25
Author(s): Hannah Strohmeier, Willem F. Scholte, Alastair Ager
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0218134

Selection and co-selection of antibiotic resistances among Escherichia coli by antibiotic use in primary care: An ecological analysis
Cited by: 32
Author(s): Koen B Pouwels, Berit Müller‐Pebody, Timo Smieszek, Susan Hopkins, Julie V. Robotham
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0029653

Expression Signature of IFN/STAT1 Signaling Genes Predicts Poor Survival Outcome in Glioblastoma Multiforme in a Subtype-Specific Manner
Cited by: 109
Author(s): Christine W. Duarte, Christopher D. Willey, Degui Zhi, Xiangqin Cui, Jacqueline J. Harris, Laura K. Vaughan, Tapan Mehta, Raymond O. McCubrey, Nikolai N. Khodarev, Ralph R. Weichselbaum, G. Yancey Gillespie
Software Mentions: 2
Published: almost 13 years ago

10.1186/s40425-019-0752-4

Development and validation of an immune checkpoint-based signature to predict prognosis in nasopharyngeal carcinoma using computational pathology analysis
Cited by: 40
Author(s): Yaqin Wang, Yu Zhang, Wei Jiang, Yu-Pei Chen, Shuoyu Xu, Na Liu, Yin Zhao, Li Li, Yuan Liu, Xiao-Hong Hong, Ye‐Lin Liang, Junyan Li, Lulu Zhang, Jing‐Ping Yun, Ying Sun, Ying‐Qin Li, Jun Ma
Software Mentions: 2
Published: about 5 years ago

10.1186/s13195-019-0502-3

Electrophysiological brain signatures for the classification of subjective cognitive decline: towards an individual detection in the preclinical stages of dementia
Cited by: 21
Author(s): David López‐Sanz, Ricardo Bruña, María Luisa Delgado-Losada, Ramón López-Higes, Alberto Marcos-Dolado, Fernando Maestú, Stefan Walter
Software Mentions: 2
Published: over 5 years ago

10.1186/s13195-018-0397-4

Alzheimer disease pathology and the cerebrospinal fluid proteome
Cited by: 61
Author(s): Loı̈c Dayon, Antonio Núñez Galindo, Jérôme Wojcik, Ornella Cominetti, John Corthésy, Aikaterini Oikonomidi, Hugues Henry, Martin Kussmann, Eugenia Migliavacca, India C. Severin, Gene L. Bowman, Julius Popp
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0110451

Discovering Main Genetic Interactions with LABNet LAsso-Based Network Inference
Cited by: 4
Author(s): Francesco Gadaleta, Kristel Van Steen
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0027683

Potential Biomarkers in Mouse Myocardium of Doxorubicin-Induced Cardiomyopathy: A Metabonomic Method and Its Application
Cited by: 59
Author(s): Guangguo Tan, Ziyang Lou, Wenting Liao, Zhenyu Zhu, Xin Dong, Wei Zhang, Wuhong Li, Yifeng Chai
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0146939

Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis
Cited by: 49
Author(s): Robert E. Tyx, Stephen B. Stanfill, Lisa M. Keong, Aidsa Rivera, Glen A. Satten, Clifford H. Watson
Software Mentions: 2
Published: almost 9 years ago

10.3389/fonc.2020.00028

Radiomics Signature as a Predictive Factor for EGFR Mutations in Advanced Lung Adenocarcinoma
Cited by: 50
Author(s): Daojun Hong, Ke Xu, Lina Zhang, Xiaoting Wan, Yan Guo
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0148195

Fusing Data Mining, Machine Learning and Traditional Statistics to Detect Biomarkers Associated with Depression
Cited by: 56
Author(s): Joanna F. Dipnall, Julie A. Pasco, Michael Berk, Lana J. Williams, Seetal Dodd, Felice N. Jacka, Denny Meyer
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0227315

Radiomics signature for prediction of lateral lymph node metastasis in conventional papillary thyroid carcinoma
Cited by: 29
Author(s): Vivian Youngjean Park, Kyunghwa Han, Hye Jung Kim, Eun Jung Lee, Ji Hyun Youk, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0196038

Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots
Cited by: 2
Author(s): Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0213258

Exploring the use of machine learning for risk adjustment: A comparison of standard and penalized linear regression models in predicting health care costs in older adults
Cited by: 37
Author(s): Hong Kan, Hadi Kharrazi, Hsien Yen Chang, Dave Bodycombe, K Lemke, Jonathan P. Weiner
Software Mentions: 2
Published: over 5 years ago

Projects: cran: glmnet

Papers Mentioning glmnet 1,607