cran: glmnet | Projects | Ecosyste.ms: Papers

10.1186/s12859-019-2743-3

AUTALASSO: an automatic adaptive LASSO for genome-wide prediction
Cited by: 17
Author(s): Patrik Waldmann, Maja Ferenčaković, Gábor Mészáros, Negar Khayatzadeh, Ino Čurik, Johann Sölkner
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1005157

Fused Regression for Multi-source Gene Regulatory Network Inference
Cited by: 36
Author(s): Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, Lionel Christiaen, Richard Bonneau
Software Mentions: 3
Published: almost 10 years ago

10.1007/s11695-016-2477-5

Upregulated TNF Expression 1 Year After Bariatric Surgery Reflects a Cachexia-Like State in Subcutaneous Adipose Tissue
Cited by: 12
Author(s): Alexander Jürets, Bianca Itariu, Magdalena Keindl, Gerhard Prager, Felix B. Langer, Viktor Grablowitz, Maximilian Zeyda, Thomas Stulnig
Software Mentions: 3
Published: almost 10 years ago

10.3390/jcm10194393

Clinical Predictors of Prolonged Hospital Stay in Patients with Myasthenia Gravis: A Study Using Machine Learning Algorithms
Cited by: 10
Author(s): Che-Cheng Chang, Jiann‐Horng Yeh, Yeng Chen, Mao-Jhen Jhou, Chi-Jie Lu
Software Mentions: 3
Published: about 5 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: about 10 years ago

10.2471/BLT.14.139972

Data-driven methods for imputing national-level incidence in global burden of disease studies
Cited by: 16
Author(s): Scott McDonald, Brecht Devleesschauwer, Niko Speybroeck, Niel Hens, Nicolas Praet, Paul R. Torgerson, Arie H. Havelaar, Felicia Wu, Marlène Tremblay, Ermias Amene, Dörte Döpfer
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.45056

Global donor and acceptor splicing site kinetics in human cells
Cited by: 47
Author(s): Leonhard Wachutka, Livia Caizzi, Julien Gagneur, Patrick Cramer
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0127433

Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia
Cited by: 25
Author(s): David G. Covell
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.58954

Genetic and environmental determinants of variation in the plasma lipidome of older Australian twins
Cited by: 8
Author(s): Matthew Wai Kin Wong, Anbupalam Thalamuthu, Nady Braidy, Karen A. Mather, Yue Liu, Liliana G Ciobanu, Bernhardt T. Baune, Nicola J. Armstrong, John B. Kwok, Peter R. Schofield, Margaret J. Wright, David Ames, Russell Pickford, Teresa Lee, Anne Poljak, Perminder S. Sachdev
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0155354

Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma
Cited by: 4
Author(s): Atefeh Lafzi, Hilal Kazan
Software Mentions: 3
Published: over 10 years ago

10.1155/2020/1570862

Establishment and Investigation of a Multiple Gene Expression Signature to Predict Long-Term Survival in Pancreatic Cancer
Cited by: 1
Author(s): Zhiqiang Zhang, Jiangning Gu, Menghong Yin, Di Wang, Chi Ma, Jian Du, Zhikun Lin, Siling Hu, Xuelong Wang, Ying Li, Guang Tan, Haifeng Luo, Gang Wei
Software Mentions: 3
Published: about 6 years ago

10.3390/genes9020078

DNA Methylation and All-Cause Mortality in Middle-Aged and Elderly Danish Twins
Cited by: 26
Author(s): Anne Marie Svane, Mette Soerensen, Jesper Lund, Qihua Tan, Juulia Jylhävä, Yunzhang Wang, Nancy L. Pedersen, Sara Hägg, Birgit Debrabant, Ian J. Deary, Kaare Christensen, Lene Christiansen, Jacob Hjelmborg
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2020.00456

Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer
Cited by: 8
Author(s): Peigen Chen, Junxian He, Huixia Ye, Senwei Jiang, Yunhui Li, Xiaomao Li, Jing Wan
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-93869-3

Associations between lipids in selected brain regions, plasma miRNA, and behavioral and cognitive measures following 28Si ion irradiation
Cited by: 7
Author(s): Jessica Minnier, Mark R. Emmett, Ruby Perez, Liang Ding, Brooke L. Barnette, Rianna E. Larios, Changjin Hong, Tae Hyun Hwang, Yongjia Yu, Christina M. Fallgren, Michael D. Story, Michael M. Weil, Jacob Raber
Software Mentions: 3
Published: about 5 years ago

10.1186/s13075-018-1580-5

Factors associated with physicians’ prescriptions for rheumatoid arthritis drugs not filled by patients
Cited by: 8
Author(s): Hong Kan, Kirill Dyagilev, Peter Schulam, Suchi Saria, Hadi Kharrazi, David P. Bodycombe, Charles Molta, Jeffrey R. Curtis
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.7838

Unfold: an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis
Cited by: 87
Author(s): Benedikt V. Ehinger, Olaf Dimigen
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pcbi.1009343

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: about 5 years ago

10.1155/2021/6674471

Pretreatment Prediction of Relapse Risk in Patients with Osteosarcoma Using Radiomics Nomogram Based on CT: A Retrospective Multicenter Study
Cited by: 8
Author(s): Jin Liu, Tao Lian, Haimei Chen, Xiaohong Wang, Xianyue Quan, Yu Deng, Juan Yao, Ming Lu, Qiang Yao, Qianjin Feng, Yinghua Zhao
Software Mentions: 3
Published: over 5 years ago

10.1038/s41416-020-0864-0

Nine-factor-based immunohistochemistry classifier predicts recurrence for early-stage hepatocellular carcinoma after curative resection
Cited by: 10
Author(s): Wei‐Ren Liu, Min Tian, Zheng Tang, Yuan Fang, Yu‐Fu Zhou, Shushu Song, Xi‐Fei Jiang, Han Wang, Chenyang Tao, Pei‐Yun Zhou, Wei‐Feng Qu, Zhen–Bin Ding, Yuan‐Fei Peng, Jian Zhou, Jia Fan, Ying‐Hong Shi
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0112943

Performance of Forest Bryophytes with Different Geographical Distributions Transplanted across a Topographically Heterogeneous Landscape
Cited by: 11
Author(s): C. Johan Dahlberg, Johan Ehrlén, Kristoffer Hylander
Software Mentions: 3
Published: almost 12 years ago

10.7717/peerj.10320

Identification of a six-gene metabolic signature predicting overall survival for patients with lung adenocarcinoma
Cited by: 3
Author(s): Yuan Cao, Xiaomei Lü, Yue Li, Jia Fu, Hongyuan Li, Xiulin Li, Ziyou Chang, Sa Liu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0243250

Medical students in distress: The impact of gender, race, debt, and disability
Cited by: 27
Author(s): Nikhil Rajapuram, Simone Langness, Megan Marshall, Amanda Sammann
Software Mentions: 3
Published: almost 6 years ago

10.3389/fdata.2020.00018

Theory In, Theory Out: The Uses of Social Theory in Machine Learning for Social Science
Cited by: 27
Author(s): Jason Radford, Kenneth Joseph
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/4037639

A Five-Gene Signature for Recurrence Prediction of Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zeyu Wang, Ningning Zhang, Jiayu Lv, Cuihua Ma, Jun Gu, Yawei Du, Yulan Qiu, Zhiguang Zhang, Man Li, Yong Jiang, Jianqiu Zhao, Hui-Qin Du, Zhiwei Zhang, Yan Zhang
Software Mentions: 3
Published: almost 6 years ago

10.3390/metabo8010006

Impact of Prolonged Blood Incubation and Extended Serum Storage at Room Temperature on the Human Serum Metabolome
Cited by: 30
Author(s): Beate Kamlage, Sebastian Neuber, Bianca Bethan, Sandra González Maldonado, Antje Wagner-Golbs, Erik Peter, Oliver Schmitz, Philipp Schatz
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2164-15-S7-S2

Computational identification of multi-omic correlates of anticancer therapeutic response
Cited by: 31
Author(s): Lindsay Stetson, Taylor M. Pearl, Yanwen Chen, Jill S. Barnholtz‐Sloan
Software Mentions: 3
Published: about 12 years ago

10.1186/s13195-020-00657-8

Association of glial and neuronal degeneration markers with Alzheimer’s disease cerebrospinal fluid profile and cognitive functions
Cited by: 17
Author(s): Unnur D. Teitsdottir, Marıá K. Jónsdóttir, Sigrún H. Lund, Taher Darreh‐Shori, Jón Snædal, Petur H. Petersen
Software Mentions: 3
Published: about 6 years ago

10.1194/jlr.M057562

Plasma diacylglycerol composition is a biomarker of metabolic syndrome onset in rhesus monkeys
Cited by: 18
Author(s): Michael A. Polewski, Maggie S. Burhans, Minghui Zhao, Ricki J. Colman, Dhanansayan Shanmuganayagam, Mary J. Lindstrom, James M. Ntambi, Rozalyn M. Anderson
Software Mentions: 3
Published: about 11 years ago

10.1007/s12561-016-9185-5

Classification of Large-Scale Remote Sensing Images for Automatic Identification of Health Hazards
Cited by: 5
Author(s): Mark A. Wolters, C. B. Dean
Software Mentions: 3
Published: almost 10 years ago

10.1007/s11222-019-09914-9

High-dimensional regression in practice: an empirical study of finite-sample prediction, variable selection and ranking
Cited by: 21
Author(s): Fan Wang, Sach Mukherjee, Sylvia Richardson, Steven M. Hill
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13195-021-00814-7

An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s disease
Cited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 5 years ago

10.12688/f1000research.16216.2

Feature selection with the R package MXM
Cited by: 9
Author(s): Michail Tsagris, Ioannis Tsamardinos
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pcbi.1003203

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients
Cited by: 21
Author(s): Niko Beerenwinkel, Hesam Montazeri, Heike Schuhmacher, Patrick Knupfer, Viktor von Wyl, Hansjakob Furrer, Manuel Battegay, Bernard Hirschel, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Sabine Yerly, Jürg Böni, Thomas Klimkait, Cristina Cellerai, Huldrych F. Günthard
Software Mentions: 3
Published: about 13 years ago

10.1042/BSR20211053

Development and validation of LRP1B mutation-associated prognostic model for hepatocellular carcinoma
Cited by: 4
Author(s): Jian Xu, Xiaomin Shen, Bo Zhang, Rui Su, Mingxuan Cui, Yan Liu, Yu Cao
Software Mentions: 3
Published: about 5 years ago

10.3389/fdata.2021.572532

Evaluating the Effectiveness of Personalized Medicine With Software
Cited by: 6
Author(s): Adam Kapelner, Justin Bleich, Alina Levine, Zachary D. Cohen, Robert J. DeRubeis, Richard A. Berk
Software Mentions: 3
Published: over 5 years ago

10.1186/1755-8794-4-26

Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients
Cited by: 107
Author(s): Michael Elashoff, James A. Wingrove, Philip Beineke, Susan E. Daniels, Whittemore G. Tingley, Steven Rosenberg, Szilárd Vörös, William E. Kraus, Geoffrey S. Ginsburg, Robert S. Schwartz, Stephen G. Ellis, Naheem Tahirkheli, Ron Waksman, John McPherson, Alexandra J. Lansky, Eric J. Topol
Software Mentions: 3
Published: over 15 years ago

10.3390/ijms21072517

A Machine Learning-Based Identification of Genes Affecting the Pharmacokinetics of Tacrolimus Using the DMETTM Plus Platform
Cited by: 10
Author(s): Jeong‐An Gim, Yonghan Kwon, Hyun A. Lee, Kyeong‐Ryoon Lee, Soohyun Kim, Yuni Choi, Yu Kyong Kim, Howard Lee
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.600546

Radiomic Analysis of Contrast-Enhanced Mammography With Different Image Types: Classification of Breast Lesions
Cited by: 3
Author(s): Simin Wang, Ning Mao, Shaofeng Duan, Qin Li, Ruimin Li, Tingting Jiang, Zhongyi Wang, Haizhu Xie, Yajia Gu
Software Mentions: 3
Published: over 5 years ago

10.7150/thno.47882

Plasma protein-based signature predicts distant metastasis and induction chemotherapy benefit in Nasopharyngeal Carcinoma
Cited by: 13
Author(s): Ye‐Lin Liang, Junyan Li, Qian Li, Ling‐Long Tang, Lei Chen, Yan‐Ping Mao, Qing‐Mei He, Xiaojing Yang, Yuan Liu, Xiaohong Hong, Yin Zhao, Shiwei He, Ying Guo, Yaqin Wang, Panpan Zhang, Na Liu, Ying‐Qin Li, Jingfei Ma
Software Mentions: 3
Published: almost 7 years ago

10.3389/fphar.2020.602030

A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the Literature
Cited by: 3
Author(s): Maria‐Theodora Pandi, Peter J. van der Spek, Maria Koromina, George P. Patrinos
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40478-019-0795-2

Multiplex proteomics identifies novel CSF and plasma biomarkers of early Alzheimer’s disease
Cited by: 127
Author(s): Christopher D. Whelan, Niklas Mattsson, Michael W. Nagle, Swetha Vijayaraghavan, Craig Hyde, Randall J. Bateman, Erik Stomrud, Julie Lee, Lori Fitz, Tarek A. Samad, Gayathri Ramaswamy, Richard Margolin, Anders Mälarstig, Oskar Hansson
Software Mentions: 3
Published: almost 7 years ago

10.3389/pore.2021.1609822

Liver-Metastasis-Related Genes are Potential Biomarkers for Predicting the Clinical Outcomes of Patients with Pancreatic Adenocarcinoma
Cited by: 6
Author(s): Yi Dong, Jingyi Tian, Bingqian Yan, Kun Lv, Ji Li, Deliang Fu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41398-021-01606-1

Who benefits most from expectancy effects? A combined neuroimaging and antidepressant trial in depressed older adults
Cited by: 3
Author(s): Sigal Zilcha‐Mano, Meredith L. Wallace, Patrick J. Brown, Joel R. Sneed, Steven P. Roose, Bret R. Rutherford
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.103491

Genome-wide analyses of the prognosis-related mRNA alternative splicing landscape and novel splicing factors based on large-scale low grade glioma cohort
Cited by: 8
Author(s): Wangrui Liu, Chuanyu Li, Wenhao Xu, Xiaojuan Liu, Hai-Dan Tang, Haiyang Huang
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.202922

A novel gene signature for prognosis prediction and chemotherapy response in patients with pancreatic cancer
Cited by: 4
Author(s): Hongcao Lin, Chonghui Hu, Shusen Zheng, Xiang Zhang, Rufu Chen, Quanbo Zhou
Software Mentions: 3
Published: over 5 years ago

10.1128/mSphere.00104-20

HIV Is Associated with Modified Humoral Immune Responses in the Setting of HIV/TB Coinfection
Cited by: 13
Author(s): Esther van Woudenbergh, Edward B. Irvine, Leela Davies, Marwou de Kock, Willem A. Hanekom, Cheryl L. Day, Sarah M. Fortune, Galit Alter
Software Mentions: 3
Published: over 6 years ago

10.3389/pore.2021.632531

UBE2T Contributes to the Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiaoyuan Wang, Yang Liu, Xue Leng, Kui Cao, Wentao Sun, Jinhong Zhu, Jianqun Ma
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: almost 11 years ago

10.3390/genes11101181

In Silico Model for Chemical-Induced Chromosomal Damages Elucidates Mode of Action and Irrelevant Positives
Cited by: 4
Author(s): Yuzo Fujita, Osamu Morita, Hiroshi Honda
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40246-018-0179-x

Bayesian variable selection for parametric survival model with applications to cancer omics data
Cited by: 10
Author(s): Weiwei Duan, Ruyang Zhang, Yang Zhao, Sipeng Shen, Yongyue Wei, Feng Chen, David C. Christiani
Software Mentions: 3
Published: almost 8 years ago

10.1042/BSR20202376

A six-gene-based signature for breast cancer radiotherapy sensitivity estimation
Cited by: 8
Author(s): Xing Chen, Junjie Zheng, Min Zhuo, Ailong Zhang, Zhebin You
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.101590

A multi-tissue full lifespan epigenetic clock for mice
Cited by: 144
Author(s): Michael J. Thompson, Karolina Chwiałkowska, Liudmilla Rubbi, Aldons J. Lusis, Richard C. Davis, Anuj Srivastava, Ron Korstanje, Gary A. Churchill, Steve Horvath, Matteo Pellegrini
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12918-018-0612-8

BLASSO: integration of biological knowledge into a regularized linear model
Cited by: 4
Author(s): Daniel Urda, Francisco Aragón, Rocío Bautista, Leonardo Franco, Francisco J. Veredas, M. Gonzalo Claros, José M. Jerez
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13046-021-02016-3

Identification and monitoring of mutations in circulating cell-free tumor DNA in hepatocellular carcinoma treated with lenvatinib
Cited by: 22
Author(s): Yoshiko Fujii, Atsushi Ono, C. Nelson Hayes, Hiroshi Aikata, Masami Yamauchi, Shinsuke Uchikawa, Kenichiro Kodama, Yuji Teraoka, Hatsue Fujino, Takashi Nakahara, Eisuke Murakami, Daiki Miki, Wataru Okamoto, Tomokazu Kawaoka, Masataka Tsuge, Michio Imamura, Kazuaki Chayama
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103363

Biomarkers of aging and lung function in the normative aging study
Cited by: 14
Author(s): Cuicui Wang, Allan C. Just, Jonathan Heiss, Brent A. Coull, Lifang Hou, Yinan Zheng, David Sparrow, Pantel Vokonas, Andrea A. Baccarelli, Joel Schwartz
Software Mentions: 3
Published: over 6 years ago

10.3390/genes12010125

Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis
Cited by: 8
Author(s): Jing Xu, Yicheng Yang, Yuejin Yang, Changming Xiong
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.677814

Development of CT-Based Imaging Signature for Preoperative Prediction of Invasive Behavior in Pancreatic Solid Pseudopapillary Neoplasm
Cited by: 7
Author(s): Wei Huang, Si-Yun Liu, Yijing Han, Liming Li, Pan Liang, Jianbo Gao
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102931

Using ESTIMATE algorithm to establish an 8-mRNA signature prognosis prediction system and identify immunocyte infiltration-related genes in Pancreatic adenocarcinoma
Cited by: 51
Author(s): Zhaoqing Meng, Dianyun Ren, Kun Zhang, Jingyuan Zhao, Xin Jin, Heshui Wu
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202838

The effectiveness of continuous renal replacement therapy in critical COVID-19 patients with cytokine release syndrome: a retrospective, multicenter, descriptive study from Wuhan, China
Cited by: 5
Author(s): Huiling Xiang, Bin Song, Yuanyuan Zhang, Jianduan Zhang, Jing Xiong
Software Mentions: 3
Published: over 5 years ago

10.7150/ijms.46780

The prognostic value and potential mechanism of Matrix Metalloproteinases among Prostate Cancer
Cited by: 13
Author(s): Xinyu Geng, Chunyang Chen, Yuhua Huang, Jianquan Hou
Software Mentions: 3
Published: almost 7 years ago

10.1007/s10994-018-5714-4

Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation
Cited by: 119
Author(s): Ioannis Tsamardinos, Elissavet Greasidou, Giorgos Borboudakis
Software Mentions: 3
Published: over 8 years ago

10.1186/s12943-016-0560-0

Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data
Cited by: 3
Author(s): Nisar Ahmed Shar, M. Vijayabaskar, David R. Westhead
Software Mentions: 3
Published: almost 10 years ago

10.1002/gepi.22345

A framework for pathway knowledge driven prioritization in genome‐wide association studies
Cited by: 2
Author(s): Shrayashi Biswas, Suresh Pal, Partha P. Majumder, Samsiddhi Bhattacharjee
Software Mentions: 3
Published: about 6 years ago

10.1155/2020/5310793

Identification of a 5-Gene Metabolic Signature for Predicting Prognosis Based on an Integrated Analysis of Tumor Microenvironment in Lung Adenocarcinoma
Cited by: 14
Author(s): Xiaolin Yu, Xiaomei Zhang, Yanxia Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-018-1514-1

Epigenetic prediction of complex traits and death
Cited by: 133
Author(s): Daniel L. McCartney, Robert F. Hillary, Anna J. Stevenson, Stuart J. Ritchie, Richard M Martin, Qian Zhang, Stewart W. Morris, Mairead Lesley Bermingham, Archie Campbell, Alison Murray, Heather C. Whalley, Catharine R. Galé, David J. Porteous, Chris Haley, Allan F. McRae, Naomi R. Wray, Peter M. Visscher, Andrew M. McIntosh, Kathryn Evans, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2021.729645

Improving Quantitative Traits in Self-Pollinated Crops Using Simulation-Based Selection With Minimal Crossing
Cited by: 1
Author(s): Daisuke Sekine, Masayuki Tsuda, Shiori Yabe, Takehiko Shimizu, Kayo Machita, Masayasu Saruta, Tetsuya Yamada, Masao Ishimoto, Hiroyoshi Iwata, Akito Kaga
Software Mentions: 3
Published: about 5 years ago

10.1186/s12881-017-0451-2

Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score method
Cited by: 34
Author(s): Guo-Bo Chen, Sang Lee, Grant W. Montgomery, Naomi R. Wray, Peter M. Visscher, Richard B. Gearry, Ian C. Lawrance, Jane M. Andrews, Peter A. Bampton, Gillian Mahy, Sally Bell, Alissa Walsh, Susan J. Connor, Miles P. Sparrow, Lisa Bowdler, Lisa A. Simms, Krupa Krishnaprasad, Graham Radford‐Smith, G. Moser
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0229509

Comparing spatial regression to random forests for large environmental data sets
Cited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202327

Identification of a novel immune microenvironment signature predicting survival and therapeutic options for bladder cancer
Cited by: 9
Author(s): Yi‐Lin Yan, Zhengnan Huang, Jinming Cai, Pengyu Tang, Fang Zhang, Mingyue Tan, Bing Shen
Software Mentions: 3
Published: almost 6 years ago

10.2196/12214

Improved Real-Time Influenza Surveillance: Using Internet Search Data in Eight Latin American Countries
Cited by: 27
Author(s): Leonardo Clemente, Fred Lu, Mauricio Santillana
Software Mentions: 3
Published: over 7 years ago

10.2196/22835

Depression, Anxiety, and Lifestyle Among Essential Workers: A Web Survey From Brazil and Spain During the COVID-19 Pandemic
Cited by: 50
Author(s): Raquel Brandini De Boni, Vicent Balanzá‐Martínez, Jurema Corrêa da Mota, Taiane de Azevedo Cardoso, Pedro Ballester, Beatriz Atienza-Carbonell, Francisco I. Bastos, Flávio Kapczinski
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2019.00996

Identification of a Nine-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival of Pancreatic Cancer
Cited by: 131
Author(s): Mei Wu, Xiaobin Li, Taiping Zhang, Ziwen Liu, Yupei Zhao
Software Mentions: 3
Published: about 7 years ago

10.3389/fpls.2020.01071

Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments?
Cited by: 7
Author(s): Manuela Haas, Heike Sprenger, Ellen Zuther, R J Peters, Sylvia Seddig, Dirk Walther, Joachim Kopka, Dirk K. Hincha, Karin Köhl
Software Mentions: 3
Published: about 6 years ago

10.1186/s13072-017-0133-5

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Cited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms21113814

Urinary MicroRNAs as Potential Markers for Non-Invasive Diagnosis of Bladder Cancer
Cited by: 13
Author(s): Kati Erdmann, Karsten Salomo, Anna Klimová, Ulrike Heberling, Andrea Lohse-Fischer, Romy Fuehrer, Christian Thomas, Ingo Roeder, Michael Froehner, Manfred P. Wirth, Susanne Fuessel
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/5554436

Multiomics Profiling and Clustering of Low-Grade Gliomas Based on the Integrated Stress Status
Cited by: 2
Author(s): Xiaolin Ren, Xin Chen, Chen Zhu, Anhua Wu
Software Mentions: 3
Published: about 5 years ago

10.3389/fpsyt.2016.00034

Utility of Machine-Learning Approaches to Identify Behavioral Markers for Substance Use Disorders: Impulsivity Dimensions as Predictors of Current Cocaine Dependence
Cited by: 53
Author(s): Woo-Young Ahn, Divya Ramesh, F. Gerard Moeller, Jasmin Vassileva
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pgen.1008896

Learning the properties of adaptive regions with functional data analysis
Cited by: 13
Author(s): Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyt.2019.00953

A Biomarker for Alzheimer’s Disease Based on Patterns of Regional Brain Atrophy
Cited by: 24
Author(s): Stefan Frenzel, Katharina Wittfeld, Mohamad Habes, Johanna Klinger-König, Robin Bülow, Henry Völzke, Hans J. Grabe
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2019.01160

A Long Non-coding RNA Signature to Improve Prognostic Prediction of Pancreatic Ductal Adenocarcinoma
Cited by: 16
Author(s): Chixing Zhou, Shun Wang, Qiang Zhou, Jin Zhao, Xianghou Xia, Wanyong Chen, Yan Zheng, Min Xue, Feng Yang, Deliang Fu, Yuehui Yin, Manar Atyah, Lun–Xiu Qin, Yue Zhao, Christiane Bruns, Hongyan Jia, Ning Ren, Qiongzhu Dong
Software Mentions: 3
Published: almost 7 years ago

10.1155/2019/3616852

Radiomics Signatures of Computed Tomography Imaging for Predicting Risk Categorization and Clinical Stage of Thymomas
Cited by: 21
Author(s): Xihai Wang, Wei Sun, Hongyuan Liang, Xiaonan Mao, Zaiming Lu
Software Mentions: 3
Published: over 7 years ago

10.3390/vaccines8020225

Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay
Cited by: 10
Author(s): Eleonora E. Lambert, Véronique Corbière, Jacqueline A. M. van Gaans-van den Brink, M. Duijst, Prashanna Balaji Venkatasubramanian, Elles Simonetti, Martijn Huynen, Dimitri Diavatopoulos, Pauline Versteegen, Guy A. M. Berbers, Françoise Mascart, Cécile A. C. M. van
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.102049

Placental epigenetic clocks: estimating gestational age using placental DNA methylation levels
Cited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: over 7 years ago

10.1007/s00405-019-05687-z

Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluation
Cited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: almost 7 years ago

10.1155/2021/6633289

A Robust Circular RNA-Associated Three-Gene Prognostic Signature for Patients with Gastric Cancer
Cited by: 2
Author(s): Li Yang, Rui Li, Xiuli Wang, Yuan Yuan, Yangmei Zhang
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101211

An epigenetic aging clock for dogs and wolves
Cited by: 107
Author(s): Michael J. Thompson, Bridgett M. vonHoldt, Steve Horvath, Matteo Pellegrini
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0160733

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data
Cited by: 31
Author(s): A. M. C. Chan, Martha T. Hamblin, Jean‐Luc Jannink
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0250198

Characteristics of spirochetemic patients with a solitary erythema migrans skin lesion in Europe
Cited by: 3
Author(s): Vera Maraspin, Katarina Ogrinc, Tereza Rojko, Petra Bogovič, Eva Ružić‐Sabljić, Andrej Kastrin, Gary P. Wormser, Franc Strle
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0241083

Predicting overdose among individuals prescribed opioids using routinely collected healthcare utilization data
Cited by: 7
Author(s): Jenny W Sun, Jessica M. Franklin, Kathryn Rough, Rishi Desai, Sonia Hernández–Dı́az, Krista F. Huybrechts, Brian T. Bateman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0160715

Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests
Cited by: 85
Author(s): Philip Zylstra, Ross A. Bradstock, Michael Bedward, Trent D. Penman, Michael Doherty, R. O. Weber, A. Malcolm Gill, Geoffrey J. Cary
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0213258

Exploring the use of machine learning for risk adjustment: A comparison of standard and penalized linear regression models in predicting health care costs in older adults
Cited by: 37
Author(s): Hong Kan, Hadi Kharrazi, Hsien Yen Chang, Dave Bodycombe, K Lemke, Jonathan P. Weiner
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0196038

Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots
Cited by: 2
Author(s): Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1001014

Gene Expression Network Reconstruction by Convex Feature Selection when Incorporating Genetic Perturbations
Cited by: 67
Author(s): Benjamin A. Logsdon, Jason G. Mezey
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0227315

Radiomics signature for prediction of lateral lymph node metastasis in conventional papillary thyroid carcinoma
Cited by: 29
Author(s): Vivian Youngjean Park, Kyunghwa Han, Hye Jung Kim, Eun Jung Lee, Ji Hyun Youk, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0148195

Fusing Data Mining, Machine Learning and Traditional Statistics to Detect Biomarkers Associated with Depression
Cited by: 56
Author(s): Joanna F. Dipnall, Julie A. Pasco, Michael Berk, Lana J. Williams, Seetal Dodd, Felice N. Jacka, Denny Meyer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0146939

Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis
Cited by: 49
Author(s): Robert E. Tyx, Stephen B. Stanfill, Lisa M. Keong, Aidsa Rivera, Glen A. Satten, Clifford H. Watson
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pbio.3000882

Independent representations of self-motion and object location in barrel cortex output
Cited by: 7
Author(s): Jonathan Andrew Cheung, Phillip Maire, Jin-Ho Kim, Kiana Lee, Garrett Flynn, Samuel Andrew Hires
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0027683

Potential Biomarkers in Mouse Myocardium of Doxorubicin-Induced Cardiomyopathy: A Metabonomic Method and Its Application
Cited by: 59
Author(s): Guangguo Tan, Ziyang Lou, Wenting Liao, Zhenyu Zhu, Xin Dong, Wei Zhang, Wuhong Li, Yifeng Chai
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0110451

Discovering Main Genetic Interactions with LABNet LAsso-Based Network Inference
Cited by: 4
Author(s): Francesco Gadaleta, Kristel Van Steen
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0029653

Expression Signature of IFN/STAT1 Signaling Genes Predicts Poor Survival Outcome in Glioblastoma Multiforme in a Subtype-Specific Manner
Cited by: 109
Author(s): Christine W. Duarte, Christopher D. Willey, Degui Zhi, Xiangqin Cui, Jacqueline J. Harris, Laura K. Vaughan, Tapan Mehta, Raymond O. McCubrey, Nikolai N. Khodarev, Ralph R. Weichselbaum, G. Yancey Gillespie
Software Mentions: 2
Published: almost 15 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607