cran: glmnet | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1003908

Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia
Cited by: 58
Author(s): Yue Li, Minggao Liang, Zhaolei Zhang
Software Mentions: 3
Published: almost 12 years ago

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning
Cited by: 46
Author(s): Janine Arloth, Gökçen Eraslan, Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Mélanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer, Felix Luessi, Sandra Nischwitz, Friedemann Paul, Heinz Wiendl, Christian Gieger, Stefanie Heilmann‐Heimbach, Tim Kacprowski, Matthias Laudes, Thomas Meitinger, Annette Peters, Rajesh Rawal, Konstantin Strauch, Susanne Lucae, Bertram Müller‐Myhsok, Marcella Rietschel, Fabian J. Theis, Elisabeth B. Binder, Nikola S. Mueller
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1005157

Fused Regression for Multi-source Gene Regulatory Network Inference
Cited by: 36
Author(s): Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, Lionel Christiaen, Richard Bonneau
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pgen.1008896

Learning the properties of adaptive regions with functional data analysis
Cited by: 13
Author(s): Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009343

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pmed.1003777

Predictive symptoms for COVID-19 in the community: REACT-1 study of over 1 million people
Cited by: 63
Author(s): Joshua Elliott, Matthew Whitaker, Barbara Bodinier, Oliver Eales, Steven Riley, Helen Ward, Graham Cooke, Ara Darzi, Marc Chadeau‐Hyam, Paul Elliott
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1003203

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients
Cited by: 21
Author(s): Niko Beerenwinkel, Hesam Montazeri, Heike Schuhmacher, Patrick Knupfer, Viktor von Wyl, Hansjakob Furrer, Manuel Battegay, Bernard Hirschel, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Sabine Yerly, Jürg Böni, Thomas Klimkait, Cristina Cellerai, Huldrych F. Günthard
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pntd.0009797

A gene expression panel for estimating age in males and females of the sleeping sickness vector Glossina morsitans
Cited by: 1
Author(s): Eric R. Lucas, Alistair C. Darby, Stephen J. Torr, Martin J. Donnelly
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0222952

Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease
Cited by: 27
Author(s): Nathan Palmer, Jocelyn A. Silvester, Jessica J. Lee, Andrew L. Beam, Inbar Fried, Vladimir I. Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C. Hood, Athos Bousvaros, Richard J. Grand, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0222641

Automated clear cell renal carcinoma grade classification with prognostic significance
Cited by: 34
Author(s): Ke Tian, Christopher A. Rubadue, Douglas I. Lin, Mitko Veta, Michael E. Pyle, Humayun Irshad, Yujing J. Heng
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0191241

A portable prototype magnetometer to differentiate ischemic and non-ischemic heart disease in patients with chest pain
Cited by: 8
Author(s): Shima Ghasemi-Roudsari, Abbas Al-Shimary, Benjamin T. H. Varcoe, Rowena Byrom, Lorraine Kearney, Mark T. Kearney
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0222763

Enriched taxa were found among the gut microbiota of centenarians in East China
Cited by: 22
Author(s): Na Wang, Rui Li, Haijiang Lin, Chaowei Fu, Xuecai Wang, Yiming Zhang, Meifang Su, Peixin Huang, Junhua Qian, Feng Jiang, Hexing Wang, Lufang Jiang, Xin Yu, Jianxiang Liu, Yue Chen, Qingwu Jiang
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0092549

The Construction of Risk Prediction Models Using GWAS Data and Its Application to a Type 2 Diabetes Prospective Cohort
Cited by: 31
Author(s): Daichi Shigemizu, Testuo Abe, Takashi Morizono, Todd A. Johnson, Keith A. Boroevich, Yoichiro Hirakawa, Toshiharu Ninomiya, Yutaka Kiyohara, Michiaki Kubo, Yusuke Nakamura, Shiro Maeda, Tatsuhiko Tsunoda
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0205971

Subgroup identification in clinical trials via the predicted individual treatment effect
Cited by: 27
Author(s): Nicolás Ballarini, G Rosenkranz, Thomas Jaki, Franz König, Martin Posch
Software Mentions: 3
Published: almost 8 years ago

10.18632/aging.101187

Methylome-wide association study of whole blood DNA in the Norfolk Island isolate identifies robust loci associated with age
Cited by: 26
Author(s): Miles C. Benton, Heidi G. Sutherland, Donia Macartney-Coxson, Larisa M. Haupt, Rodney Arthur Lea, Lyn R. Griffiths
Software Mentions: 3
Published: over 9 years ago

10.18632/aging.102049

Placental epigenetic clocks: estimating gestational age using placental DNA methylation levels
Cited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0219128

Linking forest management to moose population trends: The role of the nutritional landscape
Cited by: 21
Author(s): Thomas V. Schrempp, Janet L. Rachlow, Timothy R. Johnson, Lisa A. Shipley, Ryan A. Long, Jocelyn L. Aycrigg, Mark A. Hurley
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-85991-z

Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohort
Cited by: 3
Author(s): Isabel Drake, George Hindy, Peter Almgren, Gunnar Engström, Jan Nilsson, Olle Melander, Marju Orho‐Melander
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.571380

Multiple Immune Features-Based Signature for Predicting Recurrence and Survival of Inoperable LA-NSCLC Patients
Cited by: 2
Author(s): Meiying Guo, Wanlong Li, Butuo Li, Bing Zou, Shijiang Wang, Bin Fan, Xuejun Sun, Linlin Wang
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.22861

A novel messenger RNA signature as a prognostic biomarker for predicting relapse in pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Guodong Shi, Jingjing Zhang, Zipeng Lu, Dongfang Liu, Yang Wu, Pengfei Wu, Jie Yin, Yuan Hao, Qing Zhu, Lei Chen, Yue Fu, Yunpeng Peng, Yan Wang, Kuirong Jiang, Yi Miao
Software Mentions: 3
Published: over 8 years ago

10.3389/fchem.2020.00738

Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation
Cited by: 3
Author(s): Giulia Biosa, Diana Giurghita, Eugenio Alladio, Marco Vincenti, Tereza Neocleous
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-24519-4

A four-microRNA classifier as a novel prognostic marker for tumor recurrence in stage II colon cancer
Cited by: 30
Author(s): Havjin Jacob, Luka Stanisavljević, Kristian Eeg Storli, Kjersti Elvestad Hestetun, Olav Dahl, Mette Pernille Myklebust
Software Mentions: 3
Published: over 8 years ago

10.1186/s12986-020-00519-y

Proposal of a new equation for estimating resting energy expenditure of acute kidney injury patients on dialysis: a machine learning approach
Cited by: 4
Author(s): Daniela Ponce, Cassiana Regina de Góes, Luís Gustavo Modelli de Andrade
Software Mentions: 3
Published: almost 6 years ago

10.3390/jpm11020064

Does Proteomic Mirror Reflect Clinical Characteristics of Obesity?
Cited by: 2
Author(s): Olga I. Kiseleva, Viktoriia A. Arzumanian, Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Ekaterina V. Ilgisonis, Victor G. Zgoda, О А Плотникова, Khaider K. Sharafetdinov, А. В. Лисица, V A Tutelyan, D. B. Nikityuk, Alexander I. Archakov, Elena Ponomarenko
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.27301

Pre-surgical connectome features predict IDH status in diffuse gliomas
Cited by: 12
Author(s): Shelli R. Kesler, Rebecca Harrison, Melissa Petersen, Vikram Rao, Hannah Dyson, Kristin Alfaro-Munoz, Shiao Pei Weathers, John de Groot
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-35232-7

Lipoprotein markers associated with disability from multiple sclerosis
Cited by: 27
Author(s): Arie Gafson, Thomas Thorne, Colonel Mckechnie, Beatriz Jiménez, Richard Nicholas, Paul M. Matthews
Software Mentions: 3
Published: almost 8 years ago

10.18632/oncotarget.27616

Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patients
Cited by: 10
Author(s): Kelly Yi Ping Liu, Siyi Zhu, Denise Brooks, Reanne Bowlby, J.S. Durham, Yussanne Ma, Richard A. Moore, Andrew J. Mungall, Steven J.M. Jones, Catherine F. Poh
Software Mentions: 3
Published: about 6 years ago

10.3389/fcell.2021.703969

A Risk Score Model Incorporating Three m6A RNA Methylation Regulators and a Related Network of miRNAs-m6A Regulators-m6A Target Genes to Predict the Prognosis of Patients With Ovarian Cancer
Cited by: 12
Author(s): Qian Li, Chen Ren, Yan‐Nan Chen, Yang Li, Feng Zhang, Bao-Jin Wang, Yuanhang Zhu, Feiyan Li, Jun J. Yang, Zhen-An Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-38441-2

Elastic net-based prediction of IFN-β treatment response of patients with multiple sclerosis using time series microarray gene expression profiles
Cited by: 11
Author(s): Arika Fukushima, Masahiro Sugimoto, Satoru Hiwa, Tomoyuki Hiroyasu
Software Mentions: 3
Published: over 7 years ago

10.1007/s00787-017-0972-4

Risk factors for comorbid oppositional defiant disorder in attention-deficit/hyperactivity disorder
Cited by: 26
Author(s): Siri D. S. Noordermeer, Marjolein Luman, Wouter D. Weeda, Jan K. Buitelaar, Jennifer S. Richards, Catharina A. Hartman, Pieter J. Hoekstra, Barbara Franke, Dirk J. Heslenfeld, Jaap Oosterlaan
Software Mentions: 3
Published: over 9 years ago

10.3389/fonc.2020.569435

Utility of Radiomics for Predicting Patient Survival in Hepatocellular Carcinoma With Portal Vein Tumor Thrombosis Treated With Stereotactic Body Radiotherapy
Cited by: 8
Author(s): Kui Wu, Yongjie Shui, Wenchuan Sun, Sheng Lin, Haowen Pang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2021.600546

Radiomic Analysis of Contrast-Enhanced Mammography With Different Image Types: Classification of Breast Lesions
Cited by: 3
Author(s): Simin Wang, Ning Mao, Shaofeng Duan, Qin Li, Ruimin Li, Tingting Jiang, Zhongyi Wang, Haizhu Xie, Yajia Gu
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2021.651406

A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma
Cited by: 28
Author(s): Zheng Yang, He Tian, Zheng Zhou, Xiao Chu, Hengchang Liu, Yu Liu, Li-Yu Wang, Tao Fan, Bo Zheng, Fengwei Tan, Qi Xue, Gengshu Gao, Chunxiang Li, Jie He
Software Mentions: 3
Published: over 5 years ago

10.1186/s12967-020-02366-0

Development and validation of a hypoxia-immune-based microenvironment gene signature for risk stratification in gastric cancer
Cited by: 59
Author(s): Yifan Liu, Jianhua Wu, Weiwei Huang, Shao‐Wen Weng, Baochun Wang, Yiming Chen, Hao Wang
Software Mentions: 3
Published: over 6 years ago

10.1186/s12967-020-02255-6

Development and validation of a novel immune-related prognostic model in hepatocellular carcinoma
Cited by: 60
Author(s): Zheng Wang, Jie Zhu, Yongjuan Liu, Changhong Liu, Wenqi Wang, Fengzhe Chen, Lixian Ma
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.558428

Preoperatively Estimating the Malignant Potential of Mediastinal Lymph Nodes: A Pilot Study Toward Establishing a Robust Radiomics Model Based on Contrast-Enhanced CT Imaging
Cited by: 2
Author(s): Mengshi Dong, Gang Hou, Li Shu, Nan Li, Lina Zhang, Ke Xu
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2019.00996

Identification of a Nine-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival of Pancreatic Cancer
Cited by: 131
Author(s): Mei Wu, Xiaobin Li, Taiping Zhang, Ziwen Liu, Yupei Zhao
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-53428-3

Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2021.638362

Computed Tomography-Based Radiomics Nomogram: Potential to Predict Local Recurrence of Gastric Cancer After Radical Resection
Cited by: 6
Author(s): Liebin Huang, Feng Bao, Yueyue Li, Yu Liu, Yehang Chen, Qinxian Chen, Changlin Li, Wenxi Huang, Haibo Xue, Xuehua Li, Tao Zhou, Ronggang Li, Wansheng Long, Shi‐Ting Feng
Software Mentions: 3
Published: almost 5 years ago

10.3389/fdata.2021.572532

Evaluating the Effectiveness of Personalized Medicine With Software
Cited by: 6
Author(s): Adam Kapelner, Justin Bleich, Alina Levine, Zachary D. Cohen, Robert J. DeRubeis, Richard A. Berk
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.710694

The Prognostic Value of the DNA Repair Gene Signature in Head and Neck Squamous Cell Carcinoma
Cited by: 2
Author(s): Ruijie Ming, Enhao Wang, Jiahui Wei, Jinxiong Shen, Shimin Zong, Hongjun Xiao
Software Mentions: 3
Published: about 5 years ago

10.3390/nu12092839

Learning the Language of Social Media: A Comparison of Engagement Metrics and Social Media Strategies Used by Food and Nutrition-Related Social Media Accounts
Cited by: 26
Author(s): Amy Barklamb, Annika Molenaar, Linda Brennan, Stephanie Evans, Jamie Choong, E. Wayne Herron, Mike Reid, Tracy A. McCaffrey
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-61589-9

Analysis of SNP Array Abnormalities in Patients with DE NOVO Acute Myeloid Leukemia with Normal Karyotype
Cited by: 7
Author(s): Mariam Ibáñez, Esperanza Such, Esther Onecha, Inés Gómez-Seguí, Alessandro Liquori, Jorge Sellés, David Hervás‐Marín, Eva Barragán, Rosa Ayala, Marta Llop, Maria López-Pavía, Inmaculada Rapado, Alexander Neef, Alejandra Sanjuán-Pla, Claudia Sargas, Elisa González-Romero, Mireia Boluda-Navarro, Rafa Andreu, Leonor Senent, Pau Montesinos, Joaquín Martínez‐López, Miguel Á. Sanz, Guillermo Sanz, José Cervera
Software Mentions: 3
Published: over 6 years ago

10.3389/fdata.2020.00018

Theory In, Theory Out: The Uses of Social Theory in Machine Learning for Social Science
Cited by: 27
Author(s): Jason Radford, Kenneth Joseph
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-65040-x

Machine-learning based exploration of determinants of gray matter volume in the KORA-MRI study
Cited by: 3
Author(s): Franziska Galiè, Susanne Rospleszcz, Daniel Keeser, Ebba Beller, Ben Illigens, Roberto Lorbeer, Sergio Grosu, Sonja Selder, Sigrid Auweter, Christopher L. Schlett, Wolfgang Rathmann, Lars Schwettmann, Karl‐Heinz Ladwig, Jakob Linseisen, Annette Peters, Fabian Bamberg, Birgit Ertl‐Wagner, Sophia Stoecklein
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2019.01160

A Long Non-coding RNA Signature to Improve Prognostic Prediction of Pancreatic Ductal Adenocarcinoma
Cited by: 16
Author(s): Chixing Zhou, Shun Wang, Qiang Zhou, Jin Zhao, Xianghou Xia, Wanyong Chen, Yan Zheng, Min Xue, Feng Yang, Deliang Fu, Yuehui Yin, Manar Atyah, Lun–Xiu Qin, Yue Zhao, Christiane Bruns, Hongyan Jia, Ning Ren, Qiongzhu Dong
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-68383-7

A nomogram model for screening the risk of diabetes in a large-scale Chinese population: an observational study from 345,718 participants
Cited by: 9
Author(s): Mingyue Xue, Yinxia Su, Zuyong Feng, Shuxia Wang, Mingchen Zhang, Kai Wang, Hua Yao
Software Mentions: 3
Published: about 6 years ago

10.12688/f1000research.16216.2

Feature selection with the R package MXM
Cited by: 9
Author(s): Michail Tsagris, Ioannis Tsamardinos
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2020.00457

A Novel Multimodal Radiomics Model for Preoperative Prediction of Lymphovascular Invasion in Rectal Cancer
Cited by: 38
Author(s): Yiying Zhang, Kan He, Yan Guo, Xiangchun Liu, Qi Yang, Chunyu Zhang, Yunming Xie, Shengnan Mu, Yu Guo, Yu Fu, Huimao Zhang
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/5596924

Gut Microbiota-Related Effects of Tanhuo Decoction in Acute Ischemic Stroke
Cited by: 22
Author(s): Qian Guo, Xiaoqing Jiang, Can Ni, Linjing Li, Li Chen, Yaqi Wang, Mo Li, Chunhui Wang, Li Gao, Huaiqiu Zhu, Juexian Song
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.614927

A Novel DNA Methylation Signature as an Independent Prognostic Factor in Muscle-Invasive Bladder Cancer
Cited by: 5
Author(s): Zhijie Xu, Hemant Gujar, Guanghou Fu, Hamed Ahmadi, Sumeet Bhanvadia, Daniel J. Weisenberger, Baiye Jin, Parkash S. Gill, Inderbir S. Gill, Siamak Daneshmand, Kimberly D. Siegmund, Gangning Liang
Software Mentions: 3
Published: over 5 years ago

10.4172/jpb.1000370

Mining the Breast Cancer Proteome for Predictors of Drug Sensitivity
Cited by: 7
Author(s): Leslie C Timpe Dian Li, Ten Yang Yen Judi Wong
Software Mentions: 3
Published: over 11 years ago

10.3389/fonc.2021.677814

Development of CT-Based Imaging Signature for Preoperative Prediction of Invasive Behavior in Pancreatic Solid Pseudopapillary Neoplasm
Cited by: 7
Author(s): Wei Huang, Si-Yun Liu, Yijing Han, Liming Li, Pan Liang, Jianbo Gao
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2020.602030

A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the Literature
Cited by: 3
Author(s): Maria‐Theodora Pandi, Peter J. van der Spek, Maria Koromina, George P. Patrinos
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-021-83167-3

Radiomics signature on CECT as a predictive factor for invasiveness of lung adenocarcinoma manifesting as subcentimeter ground glass nodules
Cited by: 9
Author(s): Wufei Chen, Ming Li, Dingbiao Mao, Xianping Ge, Jiaofeng Wang, Min Tan, Wenrui Ma, Xuemei Huang, Jingyu Lu, Cheng Li, Yanqing Hua, Hao Wu
Software Mentions: 3
Published: over 5 years ago

10.1007/s00259-020-05075-4

Decoding COVID-19 pneumonia: comparison of deep learning and radiomics CT image signatures
Cited by: 61
Author(s): Hongmei Wang, Lu Wang, Edward H. Lee, Jimmy Zheng, Wei Zhang, Safwan Halabi, Chunlei Liu, Kan Deng, Jiangdian Song, Kristen W. Yeom
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2021.729645

Improving Quantitative Traits in Self-Pollinated Crops Using Simulation-Based Selection With Minimal Crossing
Cited by: 1
Author(s): Daisuke Sekine, Masayuki Tsuda, Shiori Yabe, Takehiko Shimizu, Kayo Machita, Masayasu Saruta, Tetsuya Yamada, Masao Ishimoto, Hiroyoshi Iwata, Akito Kaga
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.00456

Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer
Cited by: 8
Author(s): Peigen Chen, Junxian He, Huixia Ye, Senwei Jiang, Yunhui Li, Xiaomao Li, Jing Wan
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.01071

Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments?
Cited by: 7
Author(s): Manuela Haas, Heike Sprenger, Ellen Zuther, R J Peters, Sylvia Seddig, Dirk Walther, Joachim Kopka, Dirk K. Hincha, Karin Köhl
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyt.2016.00034

Utility of Machine-Learning Approaches to Identify Behavioral Markers for Substance Use Disorders: Impulsivity Dimensions as Predictors of Current Cocaine Dependence
Cited by: 53
Author(s): Woo-Young Ahn, Divya Ramesh, F. Gerard Moeller, Jasmin Vassileva
Software Mentions: 3
Published: over 10 years ago

10.3389/fpsyt.2019.00953

A Biomarker for Alzheimer’s Disease Based on Patterns of Regional Brain Atrophy
Cited by: 24
Author(s): Stefan Frenzel, Katharina Wittfeld, Mohamad Habes, Johanna Klinger-König, Robin Bülow, Henry Völzke, Hans J. Grabe
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.585259

Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: almost 6 years ago

10.1093/jxb/eraa302

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species
Cited by: 24
Author(s): Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, Catherine Deborde, Laëtitia Fouillen, Pierre Van Delft, Daniel Jacob, Björn Usadel, Zhanwu Dai, Michel Génard, Gilles Vercambre, Sophie Colombié, Annick Moing, Yves Gibon
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-84048-5

Utility of CT texture analysis to differentiate olfactory neuroblastoma from sinonasal squamous cell carcinoma
Cited by: 4
Author(s): Masaki Ogawa, Satoshi Osaga, Norio Shiraki, Daisuke Kawakita, Nobuhiro Hanai, Tsuneo Tamaki, Satoshi Tsukahara, Tatsuro Kawaguchi, Misugi Urano, Yuta Shibamoto
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.712746

Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile
Cited by: 9
Author(s): Ze Xiong, Yu Lin, Yan Yu, Xianghui Zhou, Jun Fan, Colin J. Rog, Kailin Cai, Zheng Wang, Zhijie Chen, Guobin Wang, Kaixiong Tao, Ming Cai
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2019.01039

Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate
Cited by: 3
Author(s): Dipen Sangurdekar, Chao Sun, Helen McLaughlin, Katherine Ayling-Rouse, Norm Allaire, M. A. Penny, Paola G. Bronson
Software Mentions: 3
Published: almost 7 years ago

10.1177/2325967117716381

Development of a Prediction Model for Stress Fracture During an Intensive Physical Training Program: The Royal Marines Commandos
Cited by: 7
Author(s): Maria T Sanchez‐Santos, T. F. Davey, K M Leyland, Adrian Allsopp, Susan A Lanham-New, Andrew Judge, N K Arden, Joanne L. Fallowfield
Software Mentions: 3
Published: about 9 years ago

10.1073/pnas.1811661116

Chloroplast competition is controlled by lipid biosynthesis in evening primroses
Cited by: 32
Author(s): Johanna Sobanski, Patrick Giavalisco, Axel Fischer, Julia M. Kreiner, Dirk Walther, Mark Aurel Schöttler, Tommaso Pellizzer, Hieronim Golczyk, Toshihiro Obata, Ralph Bock, Barbara B. Sears, Stephan Greiner
Software Mentions: 3
Published: over 7 years ago

10.1186/s12967-020-02374-0

Neutrophil-to-lymphocyte ratio predicts critical illness patients with 2019 coronavirus disease in the early stage
Cited by: 592
Author(s): Jingyuan Liu, Yao Liu, Xiang Pan, Lin Pu, Haofeng Xiong, Chuansheng Li, Ming Zhang, Jianbo Tan, Yanli Xu, Rui Song, Meihua Song, Lin Wang, Wei Zhang, Bing Han, Li Yang, Xiaojing Wang, Guiqin Zhou, Ting Zhang, Ben Li, Yanbin Wang, Zhihai Chen, Xianbo Wang
Software Mentions: 3
Published: over 6 years ago

10.1007/s00405-019-05687-z

Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluation
Cited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13072-017-0133-5

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Cited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 9 years ago

10.1093/jrr/rrz027

CT-based radiomic signatures for prediction of pathologic complete response in esophageal squamous cell carcinoma after neoadjuvant chemoradiotherapy
Cited by: 49
Author(s): Yang Zy, Binghui He, Xinyu Zhuang, Xiaoying Gao, Dandan Wang, Mei Li, Zhongqiu Lin, Ren Luo
Software Mentions: 3
Published: about 7 years ago

10.1017/S0950268815000710

Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya
Cited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 11 years ago

10.3389/fonc.2020.570281

A Three-Metabolic-Genes Risk Score Model Predicts Overall Survival in Clear Cell Renal Cell Carcinoma Patients
Cited by: 8
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 3
Published: almost 6 years ago

10.3390/nu11030576

Fatty Acids Composition of Blood Cell Membranes and Peripheral Inflammation in the PREDIMED Study: A Cross-Sectional Analysis
Cited by: 13
Author(s): Jananee Muralidharan, Christopher Papandreou, Aleix Sala‐Vila, Núria Rosique-Esteban, Montserrat Fitó, Ramón Estruch, Miguel Ángel Martínez‐González, Dolores Corella, Emilio Ros, Cristina Razquín, Olga Castañer, Jordi Salas‐Salvadó, Mònica Bulló
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.18332

A cerebrospinal fluid microRNA signature as biomarker for glioblastoma
Cited by: 97
Author(s): Johnny Akers, Wei Hua, Hongying Li, Valya Ramakrishnan, Zixiao Yang, Kai Quan, Wei Zhu, Jie Li, Javier Figueroa, Brian R. Hirshman, Brittney Miller, David Piccioni, Florian Ringel, Ricardo J. Komotar, Karen Messer, Douglas Galasko, Fred H. Hochberg, Ying Mao, Bob S. Carter, Clark C. Chen
Software Mentions: 3
Published: about 9 years ago

10.18632/oncotarget.20195

A GLO10 score for the prediction of prognosis in high grade gliomas
Cited by: 0
Author(s): Feng Chen, Peng Peng, Yi Zhou, Zhenyu Yang, Haiquan Zhang, Xiang-Sheng Ao, Daohong Zhou, Chun-Xiang Xiang
Software Mentions: 3
Published: about 9 years ago

10.1038/srep17282

Protein profiling reveals consequences of lifestyle choices on predicted biological aging
Cited by: 35
Author(s): Stefan Enroth, Sofia Bosdotter Enroth, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: over 10 years ago

10.3389/fgene.2021.613890

Novel Hypoxia-Related Gene Signature for Risk Stratification and Prognosis in Hepatocellular Carcinoma
Cited by: 7
Author(s): Quanxiao Li, Limin Jin, Minghao Jin
Software Mentions: 3
Published: about 5 years ago

10.1038/srep31619

Multitask learning improves prediction of cancer drug sensitivity
Cited by: 77
Author(s): Han Yuan, Ivan Paskov, Hristo S. Paskov, Álvaro González, Christina Leslie
Software Mentions: 3
Published: almost 10 years ago

10.18632/oncotarget.20519

Development of a preprocedure nomogram for predicting contrast-induced acute kidney injury after coronary angiography or percutaneous coronary intervention
Cited by: 11
Author(s): Bin Guo, Fusheng Ouyang, Shao-Ming Yang, Ziwei Liu, Shao-Jia Lin, Meng Wang, Xiyi Huang, Lizhu Ouyang, Haixiong Chen, Qiugen Hu
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12967-019-1946-8

Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients
Cited by: 15
Author(s): Gui‐Qi Zhu, Yi Yang, Er‐Bao Chen, Biao Wang, Kun Xiao, Shi-Ming Shi, Zheng‐Jun Zhou, Shao-Lai Zhou, Zheng Wang, Ying‐Hong Shi, Jia Fan, Jian Zhou, Tianshu Liu
Software Mentions: 3
Published: about 7 years ago

10.1038/srep43752

Noninvasive scoring system for significant inflammation related to chronic hepatitis B
Cited by: 6
Author(s): Mei‐Zhu Hong, Linglong Ye, Lixin Jin, Yandan Ren, Xiang Yu, Xiaobin Liu, Ru-Mian Zhang, Kuangnan Fang, Jin‐Shui Pan
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-03199-6

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
Cited by: 11
Author(s): Munazah Andrabi, Andrew P. Hutchins, Diego Miranda‐Saavedra, Hidetoshi Kono, Ruth Nussinov, Kenji Mizuguchi, Shandar Ahmad
Software Mentions: 3
Published: about 9 years ago

10.1155/2019/5303869

Study of the Gastrointestinal Heat Retention Syndrome in Children: From Diagnostic Model to Biological Basis
Cited by: 3
Author(s): Xueyan Ma, Chencheng Mei, Ling Huang, Chen Bai, Jingnan Xu, Yuxiang Wan, Jianhua Zhen, Zhuo Li, Lijun Cui, Shaoyang Liu, Tiegang Liu, Yu He, Xiaohong Gu
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.666826

Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
Cited by: 14
Author(s): Fangyu Chen, Jiahang Song, Ziqi Ye, Bing Xu, Hongyan Cheng, Shu Zhang, Xinchen Sun
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-07009-x

Ecological Network Inference From Long-Term Presence-Absence Data
Cited by: 46
Author(s): Elizabeth L. Sander, J. Timothy Wootton, Stefano Allesina
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-78338-7

Radiomic features based on Hessian index for prediction of prognosis in head-and-neck cancer patients
Cited by: 7
Author(s): Quoc Cuong Le, Hidetaka Arimura, Kenta Ninomiya, Yutaro Kabata
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78681-9

Prediction of breast cancer molecular subtypes using radiomics signatures of synthetic mammography from digital breast tomosynthesis
Cited by: 23
Author(s): Jinwoo Son, Si Eun Lee, Min Jung Kim, Sung-Won Kim
Software Mentions: 2
Published: over 5 years ago

10.1016/j.pmedr.2021.101475

A predictive model, and predictors of under-five child malaria prevalence in Ghana: How do LASSO, Ridge and Elastic net regression approaches compare?
Cited by: 5
Author(s): Justice Moses K. Aheto, Henry Ofori Duah, Pascal Agbadi, Emmanuel Kweku Nakua
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-79509-2

Targeted methods for epigenetic age predictions in mice
Cited by: 12
Author(s): Yang Han, Miloš Nikolić, Michael Gobs, Julia Franzen, Gerald de Haan, Hartmut Geiger, Wolfgang Wagner
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79317-8

Model selection for inferential models with high dimensional data: synthesis and graphical representation of multiple techniques
Cited by: 9
Author(s): Eliana Martins Lima, Robert Hyde, Martin A. Green
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.19799

Advanced nasopharyngeal carcinoma: pre-treatment prediction of progression based on multi-parametric MRI radiomics
Cited by: 53
Author(s): Bin Zhang, Fusheng Ouyang, Dongsheng Gu, Yang Dong, Lu Zhang, Xiaokai Mo, Wenhui Huang, Shuixing Zhang
Software Mentions: 2
Published: about 9 years ago

10.3389/fonc.2018.00296

Prostate-Specific Antigen Trends Predict the Probability of Prostate Cancer in a Very Large U.S. Veterans Affairs Cohort
Cited by: 5
Author(s): R. Jeffrey Karnes, F. Roy MacKintosh, Christopher H. Morrell, Lori Rawson, Preston Sprenkle, Michael W. Kattan, Michele Colicchia, Thomas Neville
Software Mentions: 2
Published: about 8 years ago

10.3389/fped.2021.670382

Stress and Metabolomics for Prediction of Spontaneous Preterm Birth: A Prospective Nested Case-Control Study in a Tertiary Hospital
Cited by: 3
Author(s): Dongni Huang, Zheng Liu, Xiyao Liu, Yuxiang Bai, Mengshi Wu, Xin Luo, Hongbo Qi
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep34000

Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer
Cited by: 7
Author(s): Chao Liu, Florian Rohart, Peter T. Simpson, Kum Kum Khanna, Mark A. Ragan, Kim‐Anh Lê Cao
Software Mentions: 2
Published: almost 10 years ago

10.1007/s00259-019-04495-1

Prediction of outcome in anal squamous cell carcinoma using radiomic feature analysis of pre-treatment FDG PET-CT
Cited by: 35
Author(s): Peter Brown, Jim Zhong, Russell Frood, Stuart Currie, Alexandra Gilbert, Ane L Appelt, David Sebag‐Montefiore, Andrew Scarsbrook
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12940-018-0445-3

Prenatal exposure to perfluoroalkyl and polyfluoroalkyl substances and the risk of hypertensive disorders of pregnancy
Cited by: 73
Author(s): Rong Huang, Qian Chen, Lin Zhang, Kai Luo, Lin Chen, Shasha Zhao, Liping Feng, Jun Zhang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-15888-3

Detecting the relevance to performance of whole-body movements
Cited by: 10
Author(s): Daisuke Furuki, Ken Takiyama
Software Mentions: 2
Published: almost 9 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607