Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month

Papers Mentioning glmnet 1,607

10.1186/s12859-016-1210-7
Tilting the lasso by knowledge-based post-processing
Cited by: 9
Author(s): Kukatharmini Tharmaratnam, Matthew Sperrin, Thomas Jaki, Sjur Reppe, Arnoldo Frigessi
Software Mentions: 3
Published: about 8 years ago
10.1186/s12885-020-07489-7
Development and validation of a fourteen- innate immunity-related gene pairs signature for predicting prognosis head and neck squamous cell carcinoma
Cited by: 18
Author(s): Fujun Zhang, Yu Liu, Yixin Yang, Kai Yang
Software Mentions: 3
Published: about 4 years ago
10.1186/s12885-020-06728-1
A key genomic signature associated with lymphovascular invasion in head and neck squamous cell carcinoma
Cited by: 11
Author(s): Jian Zhang, Hua Lin, Huali Jiang, Hualong Jiang, Tao Xie, Baiyao Wang, Xiaoting Huang, Jie Lin, Anan Xu, Rong Li, Jiexia Zhang, Yawei Yuan
Software Mentions: 3
Published: over 4 years ago
10.1186/s12885-021-08351-0
A stemness-based eleven-gene signature correlates with the clinical outcome of hepatocellular carcinoma
Cited by: 10
Author(s): Lei Hong, Yu Zhou, Xiangbang Xie, Wanrui Wu, Changsheng Shi, Heping Lin, Zhenjing Shi
Software Mentions: 3
Published: over 3 years ago
10.1186/s12885-021-08539-4
A methylation-based nomogram for predicting survival in patients with lung adenocarcinoma
Cited by: 5
Author(s): Xuelong Wang, Bin Zhou, Yuxin Xia, Jianjun Zuo, Yanchao Liu, Xin Bi, Xiong Luo, Chengwei Zhang
Software Mentions: 3
Published: over 3 years ago
10.1186/s12885-021-08558-1
A novel risk score system for prognostic evaluation in adenocarcinoma of the oesophagogastric junction: a large population study from the SEER database and our center
Cited by: 0
Author(s): Jun Wang, Le Shi, Jing Chen, Beidi Wang, Jia Qi, Guofeng Chen, Muxing Kang, Hang Zhang, Xiaoli Jin, Yi Huang, Zhiqing Zhao, Jianfeng Chen, Bin Song, Jian Chen
Software Mentions: 3
Published: over 3 years ago
10.1186/s12885-020-06843-z
Hospitalization and definitive radiotherapy in lung cancer: incidence, risk factors and survival impact
Cited by: 6
Author(s): Sarah Z. Hazell, Nicholas Mai, Wei Fu, Chen Hu, Cole Friedes, Alex Negron, Khinh Ranh Voong, Josephine Feliciano, Peijin Han, Samantha Myers, Todd McNutt, Russell K. Hales
Software Mentions: 3
Published: over 4 years ago
10.1186/1472-6882-13-307
A practical approach to Sasang constitutional diagnosis using vocal features
Cited by: 7
Author(s): Jun-Su Jang, Boncho Ku, Young-Su Kim, Jin Hyun Nam, Keun Ho Kim, Jong Yeol Kim
Software Mentions: 3
Published: about 11 years ago
10.1186/s12864-018-5408-0
Probing transcription factor combinatorics in different promoter classes and in enhancers
Cited by: 24
Author(s): Jimmy Vandel, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, Laurent Bréhélin
Software Mentions: 3
Published: almost 6 years ago
10.1186/1471-2164-16-S8-S5
Bioinformatics analysis of thousands of TCGA tumors to determine the involvement of epigenetic regulators in human cancer
Cited by: 30
Author(s): Florian Gnad, Sophia Doll, Gerard Manning, David Arnott, Zemin Zhang
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2164-15-S7-S2
Computational identification of multi-omic correlates of anticancer therapeutic response
Cited by: 31
Author(s): Lindsay Stetson, Taylor M. Pearl, Yanwen Chen, Jill S. Barnholtz‐Sloan
Software Mentions: 3
Published: about 10 years ago
10.1186/s12864-018-4580-6
Clustering multilayer omics data using MuNCut
Cited by: 12
Author(s): Sebastian J. Teran Hidalgo, Shuangge Ma
Software Mentions: 3
Published: over 6 years ago
10.1186/s12879-018-3182-x
Screening swabs surpass traditional risk factors as predictors of MRSA bacteremia
Cited by: 8
Author(s): Guillaume Butler‐Laporte, Matthew P Cheng, Emily G. McDonald, Todd C. Lee
Software Mentions: 3
Published: over 6 years ago
10.1186/s12881-017-0451-2
Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score method
Cited by: 34
Author(s): Guo-Bo Chen, Sang Lee, Grant W. Montgomery, Naomi R. Wray, Peter M. Visscher, Richard B. Gearry, Ian C. Lawrance, Jane M. Andrews, Peter A. Bampton, Gillian Mahy, Sally Bell, Alissa Walsh, Susan J. Connor, Miles P. Sparrow, Lisa Bowdler, Lisa A. Simms, Krupa Krishnaprasad, Graham Radford‐Smith, G. Moser
Software Mentions: 3
Published: about 7 years ago
10.1186/1755-8794-4-26
Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients
Cited by: 107
Author(s): Michael Elashoff, James A. Wingrove, Philip Beineke, Susan E. Daniels, Whittemore G. Tingley, Steven Rosenberg, Szilárd Vörös, William E. Kraus, Geoffrey S. Ginsburg, Robert S. Schwartz, Stephen G. Ellis, Naheem Tahirkheli, Ron Waksman, John McPherson, Alexandra J. Lansky, Eric J. Topol
Software Mentions: 3
Published: over 13 years ago
10.1186/s12874-016-0128-0
Comparison of predictive modeling approaches for 30-day all-cause non-elective readmission risk
Cited by: 45
Author(s): Liping Tong, Cole Erdmann, Marina Daldalian, Jing Li, Tina Esposito
Software Mentions: 3
Published: over 8 years ago
10.1186/s12866-020-01829-0
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
Cited by: 26
Author(s): Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey R. Brook, Stuart E. Turvey, Theo J. Moraes, Allan B. Becker, Piushkumar J. Mandhane, Malcolm R. Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B. Azad
Software Mentions: 3
Published: over 4 years ago
10.1186/s12918-018-0612-8
BLASSO: integration of biological knowledge into a regularized linear model
Cited by: 4
Author(s): Daniel Urda, Francisco Aragón, Rocí­o Bautista, Leonardo Franco, Francisco J. Veredas, M. Gonzalo Claros, José M. Jerez
Software Mentions: 3
Published: about 6 years ago
10.1155/2020/4037639
A Five-Gene Signature for Recurrence Prediction of Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zeyu Wang, Ningning Zhang, Jiayu Lv, Cuihua Ma, Jun Gu, Yawei Du, Yulan Qiu, Zhiguang Zhang, Man Li, Yong Jiang, Jianqiu Zhao, Hui-Qin Du, Zhiwei Zhang, Yan Zhang
Software Mentions: 3
Published: about 4 years ago
10.1155/2021/6674471
Pretreatment Prediction of Relapse Risk in Patients with Osteosarcoma Using Radiomics Nomogram Based on CT: A Retrospective Multicenter Study
Cited by: 8
Author(s): Jin Liu, Tao Lian, Haimei Chen, Xiaohong Wang, Xianyue Quan, Yu Deng, Juan Yao, Ming Lu, Qiang Yao, Qianjin Feng, Yinghua Zhao
Software Mentions: 3
Published: almost 4 years ago
10.1155/2020/1570862
Establishment and Investigation of a Multiple Gene Expression Signature to Predict Long-Term Survival in Pancreatic Cancer
Cited by: 1
Author(s): Zhiqiang Zhang, Jiangning Gu, Menghong Yin, Di Wang, Chi Ma, Jian Du, Zhikun Lin, Siling Hu, Xuelong Wang, Ying Li, Guang Tan, Haifeng Luo, Gang Wei
Software Mentions: 3
Published: about 4 years ago
10.1155/2016/2491671
Classification of Non-Small Cell Lung Cancer Using Significance Analysis of Microarray-Gene Set Reduction Algorithm
Cited by: 14
Author(s): Lei Zhang, Linlin Wang, Bochuan Du, Tianjiao Wang, Pu Tian, Suyan Tian
Software Mentions: 3
Published: almost 9 years ago
10.1155/2016/8209453
High Dimensional Variable Selection with Error Control
Cited by: 8
Author(s): Sangjin Kim, Susan Halabi
Software Mentions: 3
Published: almost 9 years ago
10.1155/2021/6650107
Tumor Microenvironment Subtypes and Immune-Related Signatures for the Prognosis of Breast Cancer
Cited by: 2
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: over 3 years ago
10.1155/2021/6633289
A Robust Circular RNA-Associated Three-Gene Prognostic Signature for Patients with Gastric Cancer
Cited by: 2
Author(s): Li Yang, Rui Li, Xiuli Wang, Yuan Yuan, Yangmei Zhang
Software Mentions: 3
Published: over 3 years ago
10.1155/2019/3616852
Radiomics Signatures of Computed Tomography Imaging for Predicting Risk Categorization and Clinical Stage of Thymomas
Cited by: 21
Author(s): Xihai Wang, Wei Sun, Hongyuan Liang, Xiaonan Mao, Zaiming Lu
Software Mentions: 3
Published: over 5 years ago
10.1155/2021/5554436
Multiomics Profiling and Clustering of Low-Grade Gliomas Based on the Integrated Stress Status
Cited by: 2
Author(s): Xiaolin Ren, Xin Chen, Chen Zhu, Anhua Wu
Software Mentions: 3
Published: over 3 years ago
10.1042/BSR20202376
A six-gene-based signature for breast cancer radiotherapy sensitivity estimation
Cited by: 8
Author(s): Xing Chen, Junjie Zheng, Min Zhuo, Ailong Zhang, Zhebin You
Software Mentions: 3
Published: almost 4 years ago
10.1042/BSR20211053
Development and validation of LRP1B mutation-associated prognostic model for hepatocellular carcinoma
Cited by: 4
Author(s): Jian Xu, Xiaomin Shen, Bo Zhang, Rui Su, Mingxuan Cui, Yan Liu, Yu Cao
Software Mentions: 3
Published: about 3 years ago
10.1038/s41416-020-0864-0
Nine-factor-based immunohistochemistry classifier predicts recurrence for early-stage hepatocellular carcinoma after curative resection
Cited by: 10
Author(s): Wei‐Ren Liu, Min Tian, Zheng Tang, Yuan Fang, Yu‐Fu Zhou, Shushu Song, Xi‐Fei Jiang, Han Wang, Chenyang Tao, Pei‐Yun Zhou, Wei‐Feng Qu, Zhen–Bin Ding, Yuan‐Fei Peng, Jian Zhou, Jia Fan, Ying‐Hong Shi
Software Mentions: 3
Published: over 4 years ago
10.2471/BLT.14.139972
Data-driven methods for imputing national-level incidence in global burden of disease studies
Cited by: 16
Author(s): Scott McDonald, Brecht Devleesschauwer, Niko Speybroeck, Niel Hens, Nicolas Praet, Paul R. Torgerson, Arie H. Havelaar, Felicia Wu, Marlène Tremblay, Ermias Amene, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago
10.20892/j.issn.2095-3941.2020.0648
A nomogram-based immune-serum scoring system predicts overall survival in patients with lung adenocarcinoma
Cited by: 5
Author(s): Qun Huang, Tongyuan Qu, Lisha Qi, Changxu Liu, Yuhong Guo, Qian Guo, Guangning Li, Yalei Wang, Wenshuai Zhang, Wei Zhao, Danyang Ren, Leina Sun, Shengguang Wang, Bin Meng, Bei Sun, Bin Zhang, Wenjuan Ma, Weijun Cao
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12935-020-1104-7
Immune-related gene signature for predicting the prognosis of head and neck squamous cell carcinoma
Cited by: 47
Author(s): Yangyang She, Xiangbo Kong, Yaping Ge, Ping Yin, Yong Li, Jieyu Chen, Feng Gao, Si-Lian Fang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s40644-021-00407-5
Application of contrast-enhanced CT radiomics in prediction of early recurrence of locally advanced oesophageal squamous cell carcinoma after trimodal therapy
Cited by: 13
Author(s): Shengjun Tang, Jing Ou, Jun Liu, Yu Wu, Changqiang Wu, Tianwu Chen, Xiaoming Zhang, Rui Li, Mengjie Tang, Yang Long, Bang-guo Tan, Fulin Lu, Jiani Hu
Software Mentions: 3
Published: over 3 years ago
10.1186/s40644-020-00320-3
A CT-based radiomics nomogram for prediction of lung adenocarcinomas and granulomatous lesions in patient with solitary sub-centimeter solid nodules
Cited by: 26
Author(s): Xiangmeng Chen, Feng Bao, Yehang Chen, Kunfeng Liu, Kunwei Li, Xiaobei Duan, Yongqiang Hao, Enming Cui, Zhuangsheng Liu, Chaotong Zhang, Wansheng Long, Xueguo Liu
Software Mentions: 3
Published: over 4 years ago
10.1186/s40644-019-0197-5
CT-based peritumoral radiomics signatures to predict early recurrence in hepatocellular carcinoma after curative tumor resection or ablation
Cited by: 105
Author(s): Quanyuan Shan, Hang-Tong Hu, Shi‐Ting Feng, Zhenpeng Peng, Shu‐Ling Chen, Qian Zhou, Xin Li, Xian-Jin Xie, Ming‐De Lu, Wei Wang, Ming Kuang
Software Mentions: 3
Published: over 5 years ago
10.1002/cam4.2921
A signature of 33 immune‐related gene pairs predicts clinical outcome in hepatocellular carcinoma
Cited by: 34
Author(s): Xiao-Yan Sun, Shuanbao Yu, Huapeng Zhang, Jie Li, Wenzhi Guo, Shuijun Zhang
Software Mentions: 3
Published: almost 5 years ago
10.1007/s10994-018-5714-4
Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation
Cited by: 119
Author(s): Ioannis Tsamardinos, Elissavet Greasidou, Giorgos Borboudakis
Software Mentions: 3
Published: over 6 years ago
10.1186/s12936-021-03604-6
Evaluation of the durability and use of long‐lasting insecticidal nets in Nicaragua
Cited by: 8
Author(s): Emperatriz Lugo Villalta, Aida Mercedes Soto Bravo, Lucrecia Vizcaino, Nicole Dzuris, Marco A. Delgado, Michael Green, Stephen C. Smith, Audrey Lenhart, Alexandre Macedo de Oliveira
Software Mentions: 3
Published: almost 4 years ago
10.3390/metabo8010006
Impact of Prolonged Blood Incubation and Extended Serum Storage at Room Temperature on the Human Serum Metabolome
Cited by: 30
Author(s): Beate Kamlage, Sebastian Neuber, Bianca Bethan, Sandra González Maldonado, Antje Wagner-Golbs, Erik Peter, Oliver Schmitz, Philipp Schatz
Software Mentions: 3
Published: almost 7 years ago
10.3390/metabo9070143
Statistical Workflow for Feature Selection in Human Metabolomics Data
Cited by: 50
Author(s): Joseph Antonelli, Brian Claggett, Mir Henglin, Andy Kim, Gavin Ovsak, Nicole J. Kim, Katherine Deng, Kevin Rao, Octavia Tyagi, Jeramie D. Watrous, Kim A. Lagerborg, Pavel Hushcha, Olga V. Demler, Samia Mora, Teemu J. Niiranen, Alexandre C. Pereira, Mohit Jain, Susan Cheng
Software Mentions: 3
Published: over 5 years ago
10.1007/s11306-021-01821-3
Systematic selection of competing metabolomics methods in a metabolite-sensory relationship study
Cited by: 3
Author(s): Nasser Davarzani, Carmen Díez-Simón, Justus L. Großmann, Doris M. Jacobs, Rudi van Doorn, M. A. Berg, Age K. Smilde, Roland Mumm, Robert D. Hall, Johan A. Westerhuis
Software Mentions: 3
Published: about 3 years ago
10.1186/s12943-016-0560-0
Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data
Cited by: 3
Author(s): Nisar Ahmed Shar, M. Vijayabaskar, David R. Westhead
Software Mentions: 3
Published: almost 8 years ago
10.15252/msb.20178064
Large‐scale image‐based profiling of single‐cell phenotypes in arrayed CRISPR‐Cas9 gene perturbation screens
Cited by: 55
Author(s): Reinoud E. A. de Groot, Joel Lüthi, Helen Lindsay, René Holtackers, Lucas Pelkmans
Software Mentions: 3
Published: almost 7 years ago
10.3390/vaccines8010004
Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses
Cited by: 21
Author(s): Muktha S. Natrajan, Nadine Rouphael, Lilin Lai, Dmitri Kazmin, Travis L. Jensen, David S. Weiss, Chris Ibegbu, Marcelo B. Sztein, William F. Hooper, Heather Hill, Evan J. Anderson, Robert A. Johnson, Patrick Sanz, Bali Pulendran, Johannes Goll, Mark J. Mulligan
Software Mentions: 3
Published: almost 5 years ago
10.3390/vaccines8020225
Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay
Cited by: 10
Author(s): Eleonora E. Lambert, Véronique Corbière, Jacqueline A. M. van Gaans-van den Brink, M. Duijst, Prashanna Balaji Venkatasubramanian, Elles Simonetti, Martijn Huynen, Dimitri Diavatopoulos, Pauline Versteegen, Guy A. M. Berbers, Françoise Mascart, Cécile A. C. M. van
Software Mentions: 3
Published: over 4 years ago
10.3389/pore.2021.632531
UBE2T Contributes to the Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiaoyuan Wang, Yang Liu, Xue Leng, Kui Cao, Wentao Sun, Jinhong Zhu, Jianqun Ma
Software Mentions: 3
Published: over 3 years ago
10.3389/pore.2021.1609822
Liver-Metastasis-Related Genes are Potential Biomarkers for Predicting the Clinical Outcomes of Patients with Pancreatic Adenocarcinoma
Cited by: 6
Author(s): Yi Dong, Jingyi Tian, Bingqian Yan, Kun Lv, Ji Li, Deliang Fu
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.10320
Identification of a six-gene metabolic signature predicting overall survival for patients with lung adenocarcinoma
Cited by: 3
Author(s): Yuan Cao, Xiaomei Lü, Yue Li, Jia Fu, Hongyuan Li, Xiulin Li, Ziyou Chang, Sa Liu
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.5643
Analysis of relative abundances with zeros on environmental gradients: a multinomial regression model
Cited by: 7
Author(s): Fiona Chong, Matthew Spencer
Software Mentions: 3
Published: about 6 years ago
10.7717/peerj.8383
Autophagy-related genes prognosis signature as potential predictive markers for immunotherapy in hepatocellular carcinoma
Cited by: 23
Author(s): Deli Mao, Zhe Zhang, Xin Zhao, Xiaoqiang Dong
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.7838
Unfold: an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis
Cited by: 87
Author(s): Benedikt V. Ehinger, Olaf Dimigen
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pcbi.1003203
The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients
Cited by: 21
Author(s): Niko Beerenwinkel, Hesam Montazeri, Heike Schuhmacher, Patrick Knupfer, Viktor von Wyl, Hansjakob Furrer, Manuel Battegay, Bernard Hirschel, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Sabine Yerly, Jürg Böni, Thomas Klimkait, Cristina Cellerai, Huldrych F. Günthard
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pcbi.1009343
BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pcbi.1005157
Fused Regression for Multi-source Gene Regulatory Network Inference
Cited by: 36
Author(s): Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, Lionel Christiaen, Richard Bonneau
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pcbi.1006599
Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited
Cited by: 26
Author(s): Dave Osthus, Ashlynn R. Daughton, Reid Priedhorsky
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pcbi.1003908
Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia
Cited by: 58
Author(s): Yue Li, Minggao Liang, Zhaolei Zhang
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pcbi.1007616
DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning
Cited by: 46
Author(s): Janine Arloth, Gökçen Eraslan, Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Mélanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer, Felix Luessi, Sandra Nischwitz, Friedemann Paul, Heinz Wiendl, Christian Gieger, Stefanie Heilmann‐Heimbach, Tim Kacprowski, Matthias Laudes, Thomas Meitinger, Annette Peters, Rajesh Rawal, Konstantin Strauch, Susanne Lucae, Bertram Müller‐Myhsok, Marcella Rietschel, Fabian J. Theis, Elisabeth B. Binder, Nikola S. Mueller
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pgen.1008896
Learning the properties of adaptive regions with functional data analysis
Cited by: 13
Author(s): Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pmed.1003777
Predictive symptoms for COVID-19 in the community: REACT-1 study of over 1 million people
Cited by: 63
Author(s): Joshua Elliott, Matthew Whitaker, Barbara Bodinier, Oliver Eales, Steven Riley, Helen Ward, Graham Cooke, Ara Darzi, Marc Chadeau‐Hyam, Paul Elliott
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pntd.0009797
A gene expression panel for estimating age in males and females of the sleeping sickness vector Glossina morsitans
Cited by: 1
Author(s): Eric R. Lucas, Alistair C. Darby, Stephen J. Torr, Martin J. Donnelly
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0222952
Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease
Cited by: 27
Author(s): Nathan Palmer, Jocelyn A. Silvester, Jessica J. Lee, Andrew L. Beam, Inbar Fried, Vladimir I. Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C. Hood, Athos Bousvaros, Richard J. Grand, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0222641
Automated clear cell renal carcinoma grade classification with prognostic significance
Cited by: 34
Author(s): Ke Tian, Christopher A. Rubadue, Douglas I. Lin, Mitko Veta, Michael E. Pyle, Humayun Irshad, Yujing J. Heng
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0191241
A portable prototype magnetometer to differentiate ischemic and non-ischemic heart disease in patients with chest pain
Cited by: 8
Author(s): Shima Ghasemi-Roudsari, Abbas Al-Shimary, Benjamin T. H. Varcoe, Rowena Byrom, Lorraine Kearney, Mark T. Kearney
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0222763
Enriched taxa were found among the gut microbiota of centenarians in East China
Cited by: 22
Author(s): Na Wang, Rui Li, Haijiang Lin, Chaowei Fu, Xuecai Wang, Yiming Zhang, Meifang Su, Peixin Huang, Junhua Qian, Feng Jiang, Hexing Wang, Lufang Jiang, Xin Yu, Jianxiang Liu, Yue Chen, Qingwu Jiang
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0092549
The Construction of Risk Prediction Models Using GWAS Data and Its Application to a Type 2 Diabetes Prospective Cohort
Cited by: 31
Author(s): Daichi Shigemizu, Testuo Abe, Takashi Morizono, Todd A. Johnson, Keith A. Boroevich, Yoichiro Hirakawa, Toshiharu Ninomiya, Yutaka Kiyohara, Michiaki Kubo, Yusuke Nakamura, Shiro Maeda, Tatsuhiko Tsunoda
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0205971
Subgroup identification in clinical trials via the predicted individual treatment effect
Cited by: 27
Author(s): Nicolás Ballarini, G Rosenkranz, Thomas Jaki, Franz König, Martin Posch
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0219128
Linking forest management to moose population trends: The role of the nutritional landscape
Cited by: 21
Author(s): Thomas V. Schrempp, Janet L. Rachlow, Timothy R. Johnson, Lisa A. Shipley, Ryan A. Long, Jocelyn L. Aycrigg, Mark A. Hurley
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0155354
Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma
Cited by: 4
Author(s): Atefeh Lafzi, Hilal Kazan
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0229509
Comparing spatial regression to random forests for large environmental data sets
Cited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0243250
Medical students in distress: The impact of gender, race, debt, and disability
Cited by: 27
Author(s): Nikhil Rajapuram, Simone Langness, Megan Marshall, Amanda Sammann
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0135284
Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1
Cited by: 20
Author(s): Swanhild U. Meyer, Steffen Sass, Nikola S. Mueller, Stefan Krebs, Stefan Bauersachs, Sebastian Kaiser, Helmut Blum, Christian Thirion, Sabine Krause, Fabian J. Theis, Michael W. Pfaffl
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0112943
Performance of Forest Bryophytes with Different Geographical Distributions Transplanted across a Topographically Heterogeneous Landscape
Cited by: 11
Author(s): C. Johan Dahlberg, Johan Ehrlén, Kristoffer Hylander
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0127433
Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia
Cited by: 25
Author(s): David G. Covell
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0109033
Classification and Visualization Based on Derived Image Features: Application to Genetic Syndromes
Cited by: 8
Author(s): Brunilda Balliu, Rolf P. Würtz, Bernhard Horsthemke, Dagmar Wieczorek, Stefan Böhringer
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0177286
Functional data analysis of sleeping energy expenditure
Cited by: 4
Author(s): Jong Soo Lee, Issa Zakeri, Nancy F. Butte
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0229210
Scores for sepsis detection and risk stratification – construction of a novel score using a statistical approach and validation of RETTS
Cited by: 14
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Per Åkesson, Fredrik Kahn
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0054885
A Biophysical Model for Identifying Splicing Regulatory Elements and Their Interactions
Cited by: 6
Author(s): Ji Wen, Zhibin Chen, Xiaodong Cai
Software Mentions: 3
Published: almost 12 years ago
10.3390/cancers12071894
Pre-Treatment T2-WI Based Radiomics Features for Prediction of Locally Advanced Rectal Cancer Non-Response to Neoadjuvant Chemoradiotherapy: A Preliminary Study
Cited by: 35
Author(s): Bianca Petresc, Andrei Lebovici, Cosmin Caraiani, Diana Feier, Florin Graur, Mircea Buruian
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers11121886
Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome
Cited by: 13
Author(s): Lifei Li, Nicolai K H Barth, Christian Pilarsky, Leila Taher
Software Mentions: 3
Published: almost 5 years ago
10.3390/cancers11091377
MALDI-MSI as a Complementary Diagnostic Tool in Cytopathology: A Pilot Study for the Characterization of Thyroid Nodules
Cited by: 22
Author(s): Giulia Capitoli, Isabella Piga, Stefania Galimberti, Davide Leni, Angela Ida Pincelli, Mattia Garancini, Francesca Clerici, Allia Mahajneh, Virginia Brambilla, Andrew Smith, Fulvio Magni, Fabio Pagni
Software Mentions: 3
Published: about 5 years ago
10.3390/cancers13143616
Risk Score Generated from CT-Based Radiomics Signatures for Overall Survival Prediction in Non-Small Cell Lung Cancer
Cited by: 27
Author(s): Viet-Huan Le, Quang-Hien Kha, Truong Nguyen Khanh Hung, Nguyen Quoc Khanh Le
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers12061629
Identification of a Blood-Based Protein Biomarker Panel for Lung Cancer Detection
Cited by: 19
Author(s): Victoria El-Khoury, Anna Schritz, Sang Yoon Kim, Antoine Lesur, Katriina Sertamo, François Bernardin, Konstantinos Pétritis, Patrick Pirrotte, Cheryl Selinsky, Jeffrey R. Whiteaker, Haizhen Zhang, Jacob J. Kennedy, Chenwei Lin, Lik Wee Lee, Ping Yan, Nhan L. Tran, Landon J. Inge, Khaled Chalabi, G. Anton Decker, Rolf Bjerkvig, Amanda G. Paulovich, Guy Berchem, Yeoun Jin Kim
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers12113204
Predictive Values of Blood-Based RNA Signatures for the Gemcitabine Response in Advanced Pancreatic Cancer
Cited by: 2
Author(s): David Piquemal, Florian Noguier, Fabien Pierrat, Roman Bruno, Jérôme Cros
Software Mentions: 3
Published: about 4 years ago
10.3390/children8030234
Adolescents’ Explanatory Models for Headaches and Associations with Behavioral and Emotional Outcomes
Cited by: 5
Author(s): Verena Neß, Anna Könning, Gerrit Hirschfeld, Julia Wager
Software Mentions: 3
Published: over 3 years ago
10.1186/s13148-020-00988-1
High-resolution analyses of human sperm dynamic methylome reveal thousands of novel age-related epigenetic alterations
Cited by: 23
Author(s): Mingju Cao, Xiaojian Shao, Peter Chan, Warren A. Cheung, Tony Kwan, Tomi Pastinen, Bernard Robaire
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13148-018-0575-z
A urine-based DNA methylation assay, ProCUrE, to identify clinically significant prostate cancer
Cited by: 25
Author(s): Fang Zhao, Ekaterina Olkhov‐Mitsel, Shivani Kamdar, Renu Jeyapala, Julia Garcia, Rachel Hurst, Marcelino Yazbek Hanna, Robert Mills, Alexandra V. Tuzova, Eve O’Reilly, Sarah Kelly, Christopher S. Cooper, Daniel Brewer, Antoinette S. Perry, Jeremy Clark, Neil Fleshner, Bharati Bapat
Software Mentions: 3
Published: about 6 years ago
10.1038/s42003-021-02179-x
Multi-species and multi-tissue methylation clocks for age estimation in toothed whales and dolphins
Cited by: 33
Author(s): Todd R. Robeck, Zhe Fei, Ake T. Lu, Amin Haghani, Eve Jourdain, Joseph A. Zoller, Caesar Z. Li, Karen J. Steinman, Stacy DiRocco, Todd L. Schmitt, S. B. Osborn, William Van Bonn, Etsuko Katsumata, June Mergl, Javier Almunia, Magdalena Rodríguez, Martin Haulena, Christopher Dold, Steve Horvath
Software Mentions: 3
Published: over 3 years ago
10.1007/s00125-019-05052-z
Predicting renal disease progression in a large contemporary cohort with type 1 diabetes mellitus
Cited by: 21
Author(s): Marco Colombo, Stuart J. McGurnaghan, Samira Bell, Finlay MacKenzie, A. W. Patrick, John R. Petrie, John McKnight, Sandra MacRury, Jamie P. Traynor, Wendy Metcalfe, Paul McKeigue, Helen M. Colhoun
Software Mentions: 3
Published: almost 5 years ago
10.1186/s41512-016-0002-x
Validation and updating of risk models based on multinomial logistic regression
Cited by: 23
Author(s): Ben Van Calster, Kirsten Van Hoorde, Yvonne Vergouwe, S. Bobdiwala, G. Condous, E. Kirk, T. Bourne, Ewout W. Steyerberg
Software Mentions: 3
Published: almost 8 years ago
10.1007/s10633-017-9593-y
Wavelet decomposition analysis in the two-flash multifocal ERG in early glaucoma: a comparison to ganglion cell analysis and visual field
Cited by: 12
Author(s): Lívia M. Brandão, Matthias Monhart, Andreas Schötzau, Anna A. Ledolter, Anja Palmowski-Wolfe
Software Mentions: 3
Published: over 7 years ago
10.15252/emmm.201810168
A circRNA signature predicts postoperative recurrence in stage II/III colon cancer
Cited by: 84
Author(s): Huai-Qiang Ju, Qi Zhao, Feng Wang, Ping Lan, Zixian Wang, Zhi Zuo, Qi Wu, Xin Fan, Hai Yu Mo, Li Chen, Ting Li, Chao Ren, Xiang Wan, Gong Chen, Yu Hong Li, Wei Hua Jia, Rui‐Hua Xu
Software Mentions: 3
Published: about 5 years ago
10.15252/emmm.201505424
Androgen receptor profiling predicts prostate cancer outcome
Cited by: 62
Author(s): Suzan Stelloo, Ekaterina Nevedomskaya, Henk G. van der Poel, Jeroen de Jong, Geert J.L.H. van Leenders, Guido Jenster, Lodewyk F.A. Wessels, Andries M. Bergman, Wilbert Zwart
Software Mentions: 3
Published: about 9 years ago
10.1002/ece3.5395
“Closer‐to‐home” strategy benefits juvenile survival in a long‐distance migratory bird
Cited by: 44
Author(s): Yachang Cheng, Wolfgang Fiedler, Martin Wikelski, Andrea Flack
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.5905
High mortality rates in a juvenile free‐ranging marine predator and links to dive and forage ability
Cited by: 9
Author(s): Sam L. Cox, Matthieu Authier, Florian Orgeret, Henri Weimerskirch, Christophe Guinet
Software Mentions: 3
Published: almost 5 years ago
10.1017/S0950268815000710
Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya
Cited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago
10.1186/s13072-017-0133-5
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Cited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 7 years ago
10.1007/s00405-019-05687-z
Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluation
Cited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: about 5 years ago
10.1007/s00787-017-0972-4
Risk factors for comorbid oppositional defiant disorder in attention-deficit/hyperactivity disorder
Cited by: 26
Author(s): Siri D. S. Noordermeer, Marjolein Luman, Wouter D. Weeda, Jan K. Buitelaar, Jennifer S. Richards, Catharina A. Hartman, Pieter J. Hoekstra, Barbara Franke, Dirk J. Heslenfeld, Jaap Oosterlaan
Software Mentions: 3
Published: over 7 years ago
10.1007/s00259-020-05075-4
Decoding COVID-19 pneumonia: comparison of deep learning and radiomics CT image signatures
Cited by: 61
Author(s): Hongmei Wang, Lu Wang, Edward H. Lee, Jimmy Zheng, Wei Zhang, Safwan Halabi, Chunlei Liu, Kan Deng, Jiangdian Song, Kristen W. Yeom
Software Mentions: 3
Published: about 4 years ago