cran: glmnet | Projects | Ecosyste.ms: Papers

10.18632/aging.102049

Placental epigenetic clocks: estimating gestational age using placental DNA methylation levels
Cited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: about 7 years ago

10.2196/12214

Improved Real-Time Influenza Surveillance: Using Internet Search Data in Eight Latin American Countries
Cited by: 27
Author(s): Leonardo Clemente, Fred Lu, Mauricio Santillana
Software Mentions: 3
Published: over 7 years ago

10.18632/aging.102544

Prognostic implications of autophagy-associated gene signatures in non-small cell lung cancer
Cited by: 106
Author(s): Yang Liu, Ligao Wu, Haijiao Ao, Meng Zhao, Xue Leng, Mingdong Liu, Jianqun Ma, Jinhong Zhu
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.01039

Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate
Cited by: 3
Author(s): Dipen Sangurdekar, Chao Sun, Helen McLaughlin, Katherine Ayling-Rouse, Norm Allaire, M. A. Penny, Paola G. Bronson
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2020.585259

Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0127433

Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia
Cited by: 25
Author(s): David G. Covell
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0112943

Performance of Forest Bryophytes with Different Geographical Distributions Transplanted across a Topographically Heterogeneous Landscape
Cited by: 11
Author(s): C. Johan Dahlberg, Johan Ehrlén, Kristoffer Hylander
Software Mentions: 3
Published: almost 12 years ago

10.3389/fgene.2020.00456

Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer
Cited by: 8
Author(s): Peigen Chen, Junxian He, Huixia Ye, Senwei Jiang, Yunhui Li, Xiaomao Li, Jing Wan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0135284

Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1
Cited by: 20
Author(s): Swanhild U. Meyer, Steffen Sass, Nikola S. Mueller, Stefan Krebs, Stefan Bauersachs, Sebastian Kaiser, Helmut Blum, Christian Thirion, Sabine Krause, Fabian J. Theis, Michael W. Pfaffl
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0243250

Medical students in distress: The impact of gender, race, debt, and disability
Cited by: 27
Author(s): Nikhil Rajapuram, Simone Langness, Megan Marshall, Amanda Sammann
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0229509

Comparing spatial regression to random forests for large environmental data sets
Cited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0155354

Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma
Cited by: 4
Author(s): Atefeh Lafzi, Hilal Kazan
Software Mentions: 3
Published: over 10 years ago

10.3389/fonc.2021.677814

Development of CT-Based Imaging Signature for Preoperative Prediction of Invasive Behavior in Pancreatic Solid Pseudopapillary Neoplasm
Cited by: 7
Author(s): Wei Huang, Si-Yun Liu, Yijing Han, Liming Li, Pan Liang, Jianbo Gao
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0219128

Linking forest management to moose population trends: The role of the nutritional landscape
Cited by: 21
Author(s): Thomas V. Schrempp, Janet L. Rachlow, Timothy R. Johnson, Lisa A. Shipley, Ryan A. Long, Jocelyn L. Aycrigg, Mark A. Hurley
Software Mentions: 3
Published: about 7 years ago

10.3389/fonc.2020.571380

Multiple Immune Features-Based Signature for Predicting Recurrence and Survival of Inoperable LA-NSCLC Patients
Cited by: 2
Author(s): Meiying Guo, Wanlong Li, Butuo Li, Bing Zou, Shijiang Wang, Bin Fan, Xuejun Sun, Linlin Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.00457

A Novel Multimodal Radiomics Model for Preoperative Prediction of Lymphovascular Invasion in Rectal Cancer
Cited by: 38
Author(s): Yiying Zhang, Kan He, Yan Guo, Xiangchun Liu, Qi Yang, Chunyu Zhang, Yunming Xie, Shengnan Mu, Yu Guo, Yu Fu, Huimao Zhang
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.710694

The Prognostic Value of the DNA Repair Gene Signature in Head and Neck Squamous Cell Carcinoma
Cited by: 2
Author(s): Ruijie Ming, Enhao Wang, Jiahui Wei, Jinxiong Shen, Shimin Zong, Hongjun Xiao
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0205971

Subgroup identification in clinical trials via the predicted individual treatment effect
Cited by: 27
Author(s): Nicolás Ballarini, G Rosenkranz, Thomas Jaki, Franz König, Martin Posch
Software Mentions: 3
Published: almost 8 years ago

10.3389/fonc.2021.638362

Computed Tomography-Based Radiomics Nomogram: Potential to Predict Local Recurrence of Gastric Cancer After Radical Resection
Cited by: 6
Author(s): Liebin Huang, Feng Bao, Yueyue Li, Yu Liu, Yehang Chen, Qinxian Chen, Changlin Li, Wenxi Huang, Haibo Xue, Xuehua Li, Tao Zhou, Ronggang Li, Wansheng Long, Shi‐Ting Feng
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2020.569435

Utility of Radiomics for Predicting Patient Survival in Hepatocellular Carcinoma With Portal Vein Tumor Thrombosis Treated With Stereotactic Body Radiotherapy
Cited by: 8
Author(s): Kui Wu, Yongjie Shui, Wenchuan Sun, Sheng Lin, Haowen Pang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13195-020-00657-8

Association of glial and neuronal degeneration markers with Alzheimer’s disease cerebrospinal fluid profile and cognitive functions
Cited by: 17
Author(s): Unnur D. Teitsdottir, Marıá K. Jónsdóttir, Sigrún H. Lund, Taher Darreh‐Shori, Jón Snædal, Petur H. Petersen
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0092549

The Construction of Risk Prediction Models Using GWAS Data and Its Application to a Type 2 Diabetes Prospective Cohort
Cited by: 31
Author(s): Daichi Shigemizu, Testuo Abe, Takashi Morizono, Todd A. Johnson, Keith A. Boroevich, Yoichiro Hirakawa, Toshiharu Ninomiya, Yutaka Kiyohara, Michiaki Kubo, Yusuke Nakamura, Shiro Maeda, Tatsuhiko Tsunoda
Software Mentions: 3
Published: over 12 years ago

10.3389/fonc.2020.570281

A Three-Metabolic-Genes Risk Score Model Predicts Overall Survival in Clear Cell Renal Cell Carcinoma Patients
Cited by: 8
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 3
Published: almost 6 years ago

10.1007/s11695-016-2477-5

Upregulated TNF Expression 1 Year After Bariatric Surgery Reflects a Cachexia-Like State in Subcutaneous Adipose Tissue
Cited by: 12
Author(s): Alexander Jürets, Bianca Itariu, Magdalena Keindl, Gerhard Prager, Felix B. Langer, Viktor Grablowitz, Maximilian Zeyda, Thomas Stulnig
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0222763

Enriched taxa were found among the gut microbiota of centenarians in East China
Cited by: 22
Author(s): Na Wang, Rui Li, Haijiang Lin, Chaowei Fu, Xuecai Wang, Yiming Zhang, Meifang Su, Peixin Huang, Junhua Qian, Feng Jiang, Hexing Wang, Lufang Jiang, Xin Yu, Jianxiang Liu, Yue Chen, Qingwu Jiang
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2021.712746

Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile
Cited by: 9
Author(s): Ze Xiong, Yu Lin, Yan Yu, Xianghui Zhou, Jun Fan, Colin J. Rog, Kailin Cai, Zheng Wang, Zhijie Chen, Guobin Wang, Kaixiong Tao, Ming Cai
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13195-021-00814-7

An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s disease
Cited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.614927

A Novel DNA Methylation Signature as an Independent Prognostic Factor in Muscle-Invasive Bladder Cancer
Cited by: 5
Author(s): Zhijie Xu, Hemant Gujar, Guanghou Fu, Hamed Ahmadi, Sumeet Bhanvadia, Daniel J. Weisenberger, Baiye Jin, Parkash S. Gill, Inderbir S. Gill, Siamak Daneshmand, Kimberly D. Siegmund, Gangning Liang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0191241

A portable prototype magnetometer to differentiate ischemic and non-ischemic heart disease in patients with chest pain
Cited by: 8
Author(s): Shima Ghasemi-Roudsari, Abbas Al-Shimary, Benjamin T. H. Varcoe, Rowena Byrom, Lorraine Kearney, Mark T. Kearney
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0222641

Automated clear cell renal carcinoma grade classification with prognostic significance
Cited by: 34
Author(s): Ke Tian, Christopher A. Rubadue, Douglas I. Lin, Mitko Veta, Michael E. Pyle, Humayun Irshad, Yujing J. Heng
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0222952

Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease
Cited by: 27
Author(s): Nathan Palmer, Jocelyn A. Silvester, Jessica J. Lee, Andrew L. Beam, Inbar Fried, Vladimir I. Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C. Hood, Athos Bousvaros, Richard J. Grand, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pntd.0009797

A gene expression panel for estimating age in males and females of the sleeping sickness vector Glossina morsitans
Cited by: 1
Author(s): Eric R. Lucas, Alistair C. Darby, Stephen J. Torr, Martin J. Donnelly
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pmed.1003777

Predictive symptoms for COVID-19 in the community: REACT-1 study of over 1 million people
Cited by: 63
Author(s): Joshua Elliott, Matthew Whitaker, Barbara Bodinier, Oliver Eales, Steven Riley, Helen Ward, Graham Cooke, Ara Darzi, Marc Chadeau‐Hyam, Paul Elliott
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2021.600546

Radiomic Analysis of Contrast-Enhanced Mammography With Different Image Types: Classification of Breast Lesions
Cited by: 3
Author(s): Simin Wang, Ning Mao, Shaofeng Duan, Qin Li, Ruimin Li, Tingting Jiang, Zhongyi Wang, Haizhu Xie, Yajia Gu
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008896

Learning the properties of adaptive regions with functional data analysis
Cited by: 13
Author(s): Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007616

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning
Cited by: 46
Author(s): Janine Arloth, Gökçen Eraslan, Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Mélanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer, Felix Luessi, Sandra Nischwitz, Friedemann Paul, Heinz Wiendl, Christian Gieger, Stefanie Heilmann‐Heimbach, Tim Kacprowski, Matthias Laudes, Thomas Meitinger, Annette Peters, Rajesh Rawal, Konstantin Strauch, Susanne Lucae, Bertram Müller‐Myhsok, Marcella Rietschel, Fabian J. Theis, Elisabeth B. Binder, Nikola S. Mueller
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1003908

Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia
Cited by: 58
Author(s): Yue Li, Minggao Liang, Zhaolei Zhang
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pcbi.1006599

Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited
Cited by: 26
Author(s): Dave Osthus, Ashlynn R. Daughton, Reid Priedhorsky
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1005157

Fused Regression for Multi-source Gene Regulatory Network Inference
Cited by: 36
Author(s): Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, Lionel Christiaen, Richard Bonneau
Software Mentions: 3
Published: over 9 years ago

10.3389/fonc.2019.00996

Identification of a Nine-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival of Pancreatic Cancer
Cited by: 131
Author(s): Mei Wu, Xiaobin Li, Taiping Zhang, Ziwen Liu, Yupei Zhao
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pcbi.1009343

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1003203

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients
Cited by: 21
Author(s): Niko Beerenwinkel, Hesam Montazeri, Heike Schuhmacher, Patrick Knupfer, Viktor von Wyl, Hansjakob Furrer, Manuel Battegay, Bernard Hirschel, Matthias Cavassini, Pietro Vernazza, Enos Bernasconi, Sabine Yerly, Jürg Böni, Thomas Klimkait, Cristina Cellerai, Huldrych F. Günthard
Software Mentions: 3
Published: almost 13 years ago

10.1194/jlr.M057562

Plasma diacylglycerol composition is a biomarker of metabolic syndrome onset in rhesus monkeys
Cited by: 18
Author(s): Michael A. Polewski, Maggie S. Burhans, Minghui Zhao, Ricki J. Colman, Dhanansayan Shanmuganayagam, Mary J. Lindstrom, James M. Ntambi, Rozalyn M. Anderson
Software Mentions: 3
Published: about 11 years ago

10.3389/fonc.2019.01160

A Long Non-coding RNA Signature to Improve Prognostic Prediction of Pancreatic Ductal Adenocarcinoma
Cited by: 16
Author(s): Chixing Zhou, Shun Wang, Qiang Zhou, Jin Zhao, Xianghou Xia, Wanyong Chen, Yan Zheng, Min Xue, Feng Yang, Deliang Fu, Yuehui Yin, Manar Atyah, Lun–Xiu Qin, Yue Zhao, Christiane Bruns, Hongyan Jia, Ning Ren, Qiongzhu Dong
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.7838

Unfold: an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis
Cited by: 87
Author(s): Benedikt V. Ehinger, Olaf Dimigen
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.8383

Autophagy-related genes prognosis signature as potential predictive markers for immunotherapy in hepatocellular carcinoma
Cited by: 23
Author(s): Deli Mao, Zhe Zhang, Xin Zhao, Xiaoqiang Dong
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.5643

Analysis of relative abundances with zeros on environmental gradients: a multinomial regression model
Cited by: 7
Author(s): Fiona Chong, Matthew Spencer
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.10320

Identification of a six-gene metabolic signature predicting overall survival for patients with lung adenocarcinoma
Cited by: 3
Author(s): Yuan Cao, Xiaomei Lü, Yue Li, Jia Fu, Hongyuan Li, Xiulin Li, Ziyou Chang, Sa Liu
Software Mentions: 3
Published: over 5 years ago

10.3389/pore.2021.1609822

Liver-Metastasis-Related Genes are Potential Biomarkers for Predicting the Clinical Outcomes of Patients with Pancreatic Adenocarcinoma
Cited by: 6
Author(s): Yi Dong, Jingyi Tian, Bingqian Yan, Kun Lv, Ji Li, Deliang Fu
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.48114

Pretectal neurons control hunting behaviour
Cited by: 39
Author(s): Paride Antinucci, Mónica Folgueira, Isaac H. Bianco
Software Mentions: 3
Published: almost 7 years ago

10.3389/pore.2021.632531

UBE2T Contributes to the Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiaoyuan Wang, Yang Liu, Xue Leng, Kui Cao, Wentao Sun, Jinhong Zhu, Jianqun Ma
Software Mentions: 3
Published: over 5 years ago

10.3390/vaccines8020225

Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay
Cited by: 10
Author(s): Eleonora E. Lambert, Véronique Corbière, Jacqueline A. M. van Gaans-van den Brink, M. Duijst, Prashanna Balaji Venkatasubramanian, Elles Simonetti, Martijn Huynen, Dimitri Diavatopoulos, Pauline Versteegen, Guy A. M. Berbers, Françoise Mascart, Cécile A. C. M. van
Software Mentions: 3
Published: over 6 years ago

10.3390/vaccines8010004

Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses
Cited by: 21
Author(s): Muktha S. Natrajan, Nadine Rouphael, Lilin Lai, Dmitri Kazmin, Travis L. Jensen, David S. Weiss, Chris Ibegbu, Marcelo B. Sztein, William F. Hooper, Heather Hill, Evan J. Anderson, Robert A. Johnson, Patrick Sanz, Bali Pulendran, Johannes Goll, Mark J. Mulligan
Software Mentions: 3
Published: over 6 years ago

10.15252/msb.20178064

Large‐scale image‐based profiling of single‐cell phenotypes in arrayed CRISPR‐Cas9 gene perturbation screens
Cited by: 55
Author(s): Reinoud E. A. de Groot, Joel Lüthi, Helen Lindsay, René Holtackers, Lucas Pelkmans
Software Mentions: 3
Published: over 8 years ago

10.3389/fonc.2020.558428

Preoperatively Estimating the Malignant Potential of Mediastinal Lymph Nodes: A Pilot Study Toward Establishing a Robust Radiomics Model Based on Contrast-Enhanced CT Imaging
Cited by: 2
Author(s): Mengshi Dong, Gang Hou, Li Shu, Nan Li, Lina Zhang, Ke Xu
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.14850

Therapy-induced developmental reprogramming of prostate cancer cells and acquired therapy resistance
Cited by: 49
Author(s): Mannan Nouri, Josselin Caradec, Amy A. Lubik, Na Li, Brett G. Hollier, Mandeep Takhar, Manuel Altimirano-Dimas, Mengqian Chen, Mani Roshan-Moniri, Miriam Butler, Melanie Lehman, Jennifer Bishop, Sarah Truong, Shih Chieh Huang, Dawn R. Cochrane, Michael Cox, Colin C. Collins, Martin Gleave, Nicholas Erho, Mohamed Alshalafa, Elai Davicioni, Colleen C. Nelson, Sheryl Gregory-Evans, R. Jeffrey Karnes, Robert B. Jenkins, Eric A. Klein, Ralph Buttyan
Software Mentions: 3
Published: over 9 years ago

10.1186/s12943-016-0560-0

Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data
Cited by: 3
Author(s): Nisar Ahmed Shar, M. Vijayabaskar, David R. Westhead
Software Mentions: 3
Published: over 9 years ago

10.1155/2020/5310793

Identification of a 5-Gene Metabolic Signature for Predicting Prognosis Based on an Integrated Analysis of Tumor Microenvironment in Lung Adenocarcinoma
Cited by: 14
Author(s): Xiaolin Yu, Xiaomei Zhang, Yanxia Zhang
Software Mentions: 3
Published: about 6 years ago

10.3389/fphar.2020.602030

A Novel Text-Mining Approach for Retrieving Pharmacogenomics Associations From the Literature
Cited by: 3
Author(s): Maria‐Theodora Pandi, Peter J. van der Spek, Maria Koromina, George P. Patrinos
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: over 10 years ago

10.7554/eLife.60220

Identifying molecular features that are associated with biological function of intrinsically disordered protein regions
Cited by: 37
Author(s): Taraneh Zarin, Bob Strome, Gang Peng, Iva Pritišanac, Julie D. Forman‐Kay, Alan M. Moses
Software Mentions: 3
Published: over 5 years ago

10.1007/s11306-021-01821-3

Systematic selection of competing metabolomics methods in a metabolite-sensory relationship study
Cited by: 3
Author(s): Nasser Davarzani, Carmen Díez-Simón, Justus L. Großmann, Doris M. Jacobs, Rudi van Doorn, M. A. Berg, Age K. Smilde, Roland Mumm, Robert D. Hall, Johan A. Westerhuis
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2021.729645

Improving Quantitative Traits in Self-Pollinated Crops Using Simulation-Based Selection With Minimal Crossing
Cited by: 1
Author(s): Daisuke Sekine, Masayuki Tsuda, Shiori Yabe, Takehiko Shimizu, Kayo Machita, Masayasu Saruta, Tetsuya Yamada, Masao Ishimoto, Hiroyoshi Iwata, Akito Kaga
Software Mentions: 3
Published: almost 5 years ago

10.3390/metabo9070143

Statistical Workflow for Feature Selection in Human Metabolomics Data
Cited by: 50
Author(s): Joseph Antonelli, Brian Claggett, Mir Henglin, Andy Kim, Gavin Ovsak, Nicole J. Kim, Katherine Deng, Kevin Rao, Octavia Tyagi, Jeramie D. Watrous, Kim A. Lagerborg, Pavel Hushcha, Olga V. Demler, Samia Mora, Teemu J. Niiranen, Alexandre C. Pereira, Mohit Jain, Susan Cheng
Software Mentions: 3
Published: about 7 years ago

10.3390/metabo8010006

Impact of Prolonged Blood Incubation and Extended Serum Storage at Room Temperature on the Human Serum Metabolome
Cited by: 30
Author(s): Beate Kamlage, Sebastian Neuber, Bianca Bethan, Sandra González Maldonado, Antje Wagner-Golbs, Erik Peter, Oliver Schmitz, Philipp Schatz
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2020.01071

Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments?
Cited by: 7
Author(s): Manuela Haas, Heike Sprenger, Ellen Zuther, R J Peters, Sylvia Seddig, Dirk Walther, Joachim Kopka, Dirk K. Hincha, Karin Köhl
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyt.2016.00034

Utility of Machine-Learning Approaches to Identify Behavioral Markers for Substance Use Disorders: Impulsivity Dimensions as Predictors of Current Cocaine Dependence
Cited by: 53
Author(s): Woo-Young Ahn, Divya Ramesh, F. Gerard Moeller, Jasmin Vassileva
Software Mentions: 3
Published: over 10 years ago

10.3389/fpsyt.2019.00953

A Biomarker for Alzheimer’s Disease Based on Patterns of Regional Brain Atrophy
Cited by: 24
Author(s): Stefan Frenzel, Katharina Wittfeld, Mohamad Habes, Johanna Klinger-König, Robin Bülow, Henry Völzke, Hans J. Grabe
Software Mentions: 3
Published: over 6 years ago

10.3389/fpsyg.2017.01726

Deep Convolutional Neural Networks Outperform Feature-Based But Not Categorical Models in Explaining Object Similarity Judgments
Cited by: 99
Author(s): Kamila M. Jozwik, Nikolaus Kriegeskorte, Katherine R. Storrs, Marieke Mur
Software Mentions: 3
Published: almost 9 years ago

10.7554/eLife.45056

Global donor and acceptor splicing site kinetics in human cells
Cited by: 47
Author(s): Leonhard Wachutka, Livia Caizzi, Julien Gagneur, Patrick Cramer
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.58954

Genetic and environmental determinants of variation in the plasma lipidome of older Australian twins
Cited by: 8
Author(s): Matthew Wai Kin Wong, Anbupalam Thalamuthu, Nady Braidy, Karen A. Mather, Yue Liu, Liliana G Ciobanu, Bernhardt T. Baune, Nicola J. Armstrong, John B. Kwok, Peter R. Schofield, Margaret J. Wright, David Ames, Russell Pickford, Teresa Lee, Anne Poljak, Perminder S. Sachdev
Software Mentions: 3
Published: about 6 years ago

10.1186/s12936-021-03604-6

Evaluation of the durability and use of long‐lasting insecticidal nets in Nicaragua
Cited by: 8
Author(s): Emperatriz Lugo Villalta, Aida Mercedes Soto Bravo, Lucrecia Vizcaino, Nicole Dzuris, Marco A. Delgado, Michael Green, Stephen C. Smith, Audrey Lenhart, Alexandre Macedo de Oliveira
Software Mentions: 3
Published: over 5 years ago

10.1007/s10994-018-5714-4

Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation
Cited by: 119
Author(s): Ioannis Tsamardinos, Elissavet Greasidou, Giorgos Borboudakis
Software Mentions: 3
Published: over 8 years ago

10.1002/cam4.2921

A signature of 33 immune‐related gene pairs predicts clinical outcome in hepatocellular carcinoma
Cited by: 34
Author(s): Xiao-Yan Sun, Shuanbao Yu, Huapeng Zhang, Jie Li, Wenzhi Guo, Shuijun Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s40644-019-0197-5

CT-based peritumoral radiomics signatures to predict early recurrence in hepatocellular carcinoma after curative tumor resection or ablation
Cited by: 105
Author(s): Quanyuan Shan, Hang-Tong Hu, Shi‐Ting Feng, Zhenpeng Peng, Shu‐Ling Chen, Qian Zhou, Xin Li, Xian-Jin Xie, Ming‐De Lu, Wei Wang, Ming Kuang
Software Mentions: 3
Published: over 7 years ago

10.1186/s40644-020-00320-3

A CT-based radiomics nomogram for prediction of lung adenocarcinomas and granulomatous lesions in patient with solitary sub-centimeter solid nodules
Cited by: 26
Author(s): Xiangmeng Chen, Feng Bao, Yehang Chen, Kunfeng Liu, Kunwei Li, Xiaobei Duan, Yongqiang Hao, Enming Cui, Zhuangsheng Liu, Chaotong Zhang, Wansheng Long, Xueguo Liu
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.103491

Genome-wide analyses of the prognosis-related mRNA alternative splicing landscape and novel splicing factors based on large-scale low grade glioma cohort
Cited by: 8
Author(s): Wangrui Liu, Chuanyu Li, Wenhao Xu, Xiaojuan Liu, Hai-Dan Tang, Haiyang Huang
Software Mentions: 3
Published: about 6 years ago

10.1186/s40644-021-00407-5

Application of contrast-enhanced CT radiomics in prediction of early recurrence of locally advanced oesophageal squamous cell carcinoma after trimodal therapy
Cited by: 13
Author(s): Shengjun Tang, Jing Ou, Jun Liu, Yu Wu, Changqiang Wu, Tianwu Chen, Xiaoming Zhang, Rui Li, Mengjie Tang, Yang Long, Bang-guo Tan, Fulin Lu, Jiani Hu
Software Mentions: 3
Published: about 5 years ago

10.3390/genes9020078

DNA Methylation and All-Cause Mortality in Middle-Aged and Elderly Danish Twins
Cited by: 26
Author(s): Anne Marie Svane, Mette Soerensen, Jesper Lund, Qihua Tan, Juulia Jylhävä, Yunzhang Wang, Nancy L. Pedersen, Sara Hägg, Birgit Debrabant, Ian J. Deary, Kaare Christensen, Lene Christiansen, Jacob Hjelmborg
Software Mentions: 3
Published: over 8 years ago

10.3390/genes11101181

In Silico Model for Chemical-Induced Chromosomal Damages Elucidates Mode of Action and Irrelevant Positives
Cited by: 4
Author(s): Yuzo Fujita, Osamu Morita, Hiroshi Honda
Software Mentions: 3
Published: almost 6 years ago

10.3390/genes12010125

Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis
Cited by: 8
Author(s): Jing Xu, Yicheng Yang, Yuejin Yang, Changming Xiong
Software Mentions: 3
Published: over 5 years ago

10.1186/s12935-020-1104-7

Immune-related gene signature for predicting the prognosis of head and neck squamous cell carcinoma
Cited by: 47
Author(s): Yangyang She, Xiangbo Kong, Yaping Ge, Ping Yin, Yong Li, Jieyu Chen, Feng Gao, Si-Lian Fang
Software Mentions: 3
Published: over 6 years ago

10.1002/gepi.22345

A framework for pathway knowledge driven prioritization in genome‐wide association studies
Cited by: 2
Author(s): Shrayashi Biswas, Suresh Pal, Partha P. Majumder, Samsiddhi Bhattacharjee
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.202922

A novel gene signature for prognosis prediction and chemotherapy response in patients with pancreatic cancer
Cited by: 4
Author(s): Hongcao Lin, Chonghui Hu, Shusen Zheng, Xiang Zhang, Rufu Chen, Quanbo Zhou
Software Mentions: 3
Published: over 5 years ago

10.20892/j.issn.2095-3941.2020.0648

A nomogram-based immune-serum scoring system predicts overall survival in patients with lung adenocarcinoma
Cited by: 5
Author(s): Qun Huang, Tongyuan Qu, Lisha Qi, Changxu Liu, Yuhong Guo, Qian Guo, Guangning Li, Yalei Wang, Wenshuai Zhang, Wei Zhao, Danyang Ren, Leina Sun, Shengguang Wang, Bin Meng, Bei Sun, Bin Zhang, Wenjuan Ma, Weijun Cao
Software Mentions: 3
Published: over 5 years ago

10.1186/gb-2013-14-10-r115

DNA methylation age of human tissues and cell types
Cited by: 4,174
Author(s): Steve Horvath
Software Mentions: 3
Published: over 13 years ago

10.1186/s13059-015-0610-8

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome
Cited by: 76
Author(s): Ohad Manor, Elhanan Borenstein
Software Mentions: 3
Published: over 11 years ago

10.2471/BLT.14.139972

Data-driven methods for imputing national-level incidence in global burden of disease studies
Cited by: 16
Author(s): Scott McDonald, Brecht Devleesschauwer, Niko Speybroeck, Niel Hens, Nicolas Praet, Paul R. Torgerson, Arie H. Havelaar, Felicia Wu, Marlène Tremblay, Ermias Amene, Dörte Döpfer
Software Mentions: 3
Published: over 11 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: almost 10 years ago

10.18632/aging.101590

A multi-tissue full lifespan epigenetic clock for mice
Cited by: 144
Author(s): Michael J. Thompson, Karolina Chwiałkowska, Liudmilla Rubbi, Aldons J. Lusis, Richard C. Davis, Anuj Srivastava, Ron Korstanje, Gary A. Churchill, Steve Horvath, Matteo Pellegrini
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13059-018-1514-1

Epigenetic prediction of complex traits and death
Cited by: 133
Author(s): Daniel L. McCartney, Robert F. Hillary, Anna J. Stevenson, Stuart J. Ritchie, Richard M Martin, Qian Zhang, Stewart W. Morris, Mairead Lesley Bermingham, Archie Campbell, Alison Murray, Heather C. Whalley, Catharine R. Galé, David J. Porteous, Chris Haley, Allan F. McRae, Naomi R. Wray, Peter M. Visscher, Andrew M. McIntosh, Kathryn Evans, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41416-020-0864-0

Nine-factor-based immunohistochemistry classifier predicts recurrence for early-stage hepatocellular carcinoma after curative resection
Cited by: 10
Author(s): Wei‐Ren Liu, Min Tian, Zheng Tang, Yuan Fang, Yu‐Fu Zhou, Shushu Song, Xi‐Fei Jiang, Han Wang, Chenyang Tao, Pei‐Yun Zhou, Wei‐Feng Qu, Zhen–Bin Ding, Yuan‐Fei Peng, Jian Zhou, Jia Fan, Ying‐Hong Shi
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.103363

Biomarkers of aging and lung function in the normative aging study
Cited by: 14
Author(s): Cuicui Wang, Allan C. Just, Jonathan Heiss, Brent A. Coull, Lifang Hou, Yinan Zheng, David Sparrow, Pantel Vokonas, Andrea A. Baccarelli, Joel Schwartz
Software Mentions: 3
Published: about 6 years ago

10.1093/gbe/evy146

Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism
Cited by: 15
Author(s): Igor B. Rogozin, E. Michael Gertz, Pavel V. Baranov, Eugenia Poliakov, Alejandro A. Schäffer
Software Mentions: 3
Published: about 8 years ago

10.1186/gm433

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
Cited by: 96
Author(s): Gerald Quon, Syed Haider, Amit G. Deshwar, Ang Cui, Paul C. Boutros, Quaid Morris
Software Mentions: 3
Published: over 13 years ago

10.1042/BSR20211053

Development and validation of LRP1B mutation-associated prognostic model for hepatocellular carcinoma
Cited by: 4
Author(s): Jian Xu, Xiaomin Shen, Bo Zhang, Rui Su, Mingxuan Cui, Yan Liu, Yu Cao
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20202376

A six-gene-based signature for breast cancer radiotherapy sensitivity estimation
Cited by: 8
Author(s): Xing Chen, Junjie Zheng, Min Zhuo, Ailong Zhang, Zhebin You
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/5554436

Multiomics Profiling and Clustering of Low-Grade Gliomas Based on the Integrated Stress Status
Cited by: 2
Author(s): Xiaolin Ren, Xin Chen, Chen Zhu, Anhua Wu
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.102931

Using ESTIMATE algorithm to establish an 8-mRNA signature prognosis prediction system and identify immunocyte infiltration-related genes in Pancreatic adenocarcinoma
Cited by: 51
Author(s): Zhaoqing Meng, Dianyun Ren, Kun Zhang, Jingyuan Zhao, Xin Jin, Heshui Wu
Software Mentions: 3
Published: over 6 years ago

10.1093/gigascience/giaa076

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network
Cited by: 30
Author(s): Xiang Zhou, Hua Chai, Huiying Zhao, Ching Hsing Luo, Yuedong Yang
Software Mentions: 3
Published: about 6 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607