cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.567160

Value of 18F-FDG PET/CT-Based Radiomics Nomogram to Predict Survival Outcomes and Guide Personalized Targeted Therapy in Lung Adenocarcinoma With EGFR Mutations
Cited by: 10
Author(s): Bin Yang, Han Ji, Jing Zhong, Lifang Ma, Jian Zhong, Hao Dong, Changsheng Zhou, Shaofeng Duan, Chengzhang Zhu, Jiahe Tian, Longjiang Zhang, Rui Wang, Hong Zhu, Guangming Lu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12889-019-7861-3

Health as an independent predictor of the 2017 French presidential voting behaviour: a cross-sectional analysis
Cited by: 5
Author(s): Jean–David Zeitoun, Matthieu Faron, Sophie de Vaugrigneuse, Jérémie H. Lefèvre
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2021.687884

CT-Based Radiomics Signature With Machine Learning Predicts MYCN Amplification in Pediatric Abdominal Neuroblastoma
Cited by: 16
Author(s): Xin Chen, Haoru Wang, Kai-Ping Huang, Huan Liu, Hui-Sheng Ding, Li Zhang, Ting Zhang, Wenqing Yu, Ling He
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12889-020-09130-5

Model of genetic and environmental factors associated with type 2 diabetes mellitus in a Chinese Han population
Cited by: 7
Author(s): Zheng Li, Chengyin Ye, Tianyu Zhao, Lei Yang
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1007773

Dysregulated biodynamics in metabolic attractor systems precede the emergence of amyotrophic lateral sclerosis
Cited by: 9
Author(s): Paul Curtin, Christine Austin, Austen Curtin, Chris Gennings, Claudia Figueroa‐Romero, Kristen A. Mikhail, Tatiana M. Botero, Stephen A. Goutman, Eva L. Feldman, Manish Arora
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pcbi.1005627

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation
Cited by: 7
Author(s): W. T. Anderson, Danielle DeCicco, James S. Schwaber, Rajanikanth Vadigepalli
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pcbi.1004790

Pathway-Based Genomics Prediction using Generalized Elastic Net
Cited by: 82
Author(s): Artem Sokolov, Daniel E. Carlin, Evan O. Paull, Robert Baertsch, Joshua M. Stuart
Software Mentions: 4
Published: over 10 years ago

10.18632/aging.104134

The value of a metabolic reprogramming-related gene signature for pancreatic adenocarcinoma prognosis prediction
Cited by: 12
Author(s): Zhen Tan, Yubin Lei, Jin Xu, Si Shi, Jie Hua, Bo Zhang, Qingcai Meng, Jiang Liu, Yiyin Zhang, Miaoyan Wei, Xianjun Yu, Chen Liang
Software Mentions: 4
Published: over 5 years ago

10.1098/rstb.2019.0666

Neurons in primate prefrontal cortex signal valuable social information during natural viewing
Cited by: 4
Author(s): Geoffrey K. Adams, Wei Song Ong, J. M. Pearson, Karli Watson, Michael L. Platt
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10812

Construction of an immune-related signature with prognostic value for colon cancer
Cited by: 2
Author(s): Yunxia Lv, Xinyi Wang, Yu Ren, Xiaorui Fu, Taiyuan Li, Qunguang Jiang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1003926

Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects
Cited by: 235
Author(s): Nikolaos A. Patsopoulos, Lisa F. Barcellos, Rogier Q. Hintzen, Catherine Schaefer, Cornelia M. van Duijn, Janelle A. Noble, Towfique Raj, Pierre-Antoine Gourraud, Barbara Elaine Stranger, Jorge R. Oksenberg, Tomas Olsson, Bruce Taylor, Stephen Sawcer, David A. Hafler, Mary Carrington, Philip L. De Jager, Paul I. W. de Bakker
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pgen.1007473

RES complex is associated with intron definition and required for zebrafish early embryogenesis
Cited by: 23
Author(s): Juan Pablo Fernández, Miguel A. Moreno-Mateos, André Gohr, Liyun Miao, Shun Hang Chan, Manuel Irimia, Antonio J. Giráldez
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pgen.1004137

Accurate and Robust Genomic Prediction of Celiac Disease Using Statistical Learning
Cited by: 97
Author(s): Gad Abraham, Jason A. Tye‐Din, Oneil G. Bhalala, Adam Kowalczyk, Justin Zobel, Michael Inouye
Software Mentions: 4
Published: over 12 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1004890

Altered Chromatin Occupancy of Master Regulators Underlies Evolutionary Divergence in the Transcriptional Landscape of Erythroid Differentiation
Cited by: 41
Author(s): Jacob C. Ulirsch, Jessica Lacy, Xiuli An, Narla Mohandas, Tarjei S. Mikkelsen, Vijay G. Sankaran
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pmed.1002194

Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study
Cited by: 401
Author(s): H. Raza Ali, L Chlon, Paul D.P. Pharoah, Florian Markowetz, Carlos Caldas
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-020-3344-x

Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery
Cited by: 15
Author(s): Xin Guan, George C. Runger, Li Liu
Software Mentions: 4
Published: over 6 years ago

10.1186/1753-6561-8-S1-S94

Does the inclusion of rare variants improve risk prediction?
Cited by: 1
Author(s): Erin Austin, Wei Pan, Xiaotong Shen
Software Mentions: 4
Published: about 12 years ago

10.18632/aging.202170

A three-gene signature based on tumour microenvironment predicts overall survival of osteosarcoma in adolescents and young adults
Cited by: 10
Author(s): Chun-Kai Wen, Hongxue Wang, Han Wang, Hao Yuan Mo, Weiying Zhong, Jing Tang, Yuefeng Lu, Wenxian Zhou, Aihua Tan, Yan Liu, Weimin Xie
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212846

Predicting one-year outcome in first episode psychosis using machine learning
Cited by: 28
Author(s): Samuel P Leighton, Rajeev Krishnadas, Kelly K. Chung, Alison Blair, Sheona Brown, Suzy Clark, Kathryn Sowerbutts, Matthias Schwannauer, Jonathan Cavanagh, Andrew Gumley
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0180221

Using machine learning and surface reconstruction to accurately differentiate different trajectories of mood and energy dysregulation in youth
Cited by: 0
Author(s): Amelia Versace, Vinod Kumar Sharma, Michele Bertocci, Genna Bebko, Satish Iyengar, Amanda Dwojak, Lisa Bonar, Susan B. Perlman, Claudiu Schirda, Michael J. Travis, Mary Kay Gill, Vaibhav A. Diwadkar, Jeffrey L. Sunshine, Scott K. Holland, Robert A. Kowatch, Boris Birmaher, David Axelson, Thomas Frazier, L. Eugene Arnold, Mary A. Fristad, Eric A. Youngstrom, Sarah M. Horwitz, Robert L. Findling, Mary L. Phillips
Software Mentions: 4
Published: about 9 years ago

10.1186/s12859-014-0394-y

MPAgenomics: an R package for multi-patient analysis of genomic markers
Cited by: 2
Author(s): Quentin Grimonprez, Alain Célisse, Samuel Blanck, Meyling Cheok, Martin Figeac, Guillemette Marot
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0120995

A Panel of Novel Biomarkers Representing Different Disease Pathways Improves Prediction of Renal Function Decline in Type 2 Diabetes
Cited by: 54
Author(s): Michelle J Pena, Andreas Heinzel, Georg Heinze, A. Alkhalaf, Stephan J. L. Bakker, Tri Q. Nguyen, Roel Goldschmeding, Henk J. G. Bilo, Paul Perco, Bernd Mayer, Dick de Zeeuw, Hiddo J L Heerspink
Software Mentions: 4
Published: over 11 years ago

10.1186/s12859-018-2512-8

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data
Cited by: 9
Author(s): A. M. C. Chan, Amy L. Williams, Jean‐Luc Jannink
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.103753

Eight immune-related genes predict survival outcomes and immune characteristics in breast cancer
Cited by: 2
Author(s): Xu Han, Gangjian Wang, Lili Zhu, Liu Hong, Bingjie Li
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0207917

Spatial variability of biogeochemistry in shallow coastal benthic communities of Potter Cove (Antarctica) and the impact of a melting glacier
Cited by: 13
Author(s): Ralf Hoffmann, Francesca Pasotti, Susana Vázquez, Nene Lefaible, Anders Torstensson, Walter P. Mac Cormack, Frank Wenzhöfer, Ulrike Braeckman
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0214282

DNA methylation among firefighters
Cited by: 13
Author(s): Jin Zhou, Timothy G. Jenkins, Alesia M. Jung, Kyoung Sook Jeong, Jing Zhai, Elizabeth T. Jacobs, Stephanie Griffin, Devi Dearmon-Moore, Sally R. Littau, Wayne F. Peate, Nathan A. Ellis, Peter Lance, Yin Chen, Jefferey L. Burgess
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0143627

Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells
Cited by: 17
Author(s): Elena Grassi, Ettore Zapparoli, Ivan Molineris, Paolo Provero
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2105-15-62

Stability SCAD: a powerful approach to detect interactions in large-scale genomic study
Cited by: 1
Author(s): Jianwei Gou, Yang Zhao, Wei Yongyue, Chen Wu, Ruyang Zhang, Yongyong Qiu, Ping Zeng, Wen Tan, Dianke Yu, Tangchun Wu, Zhibin Hu, Dongxin Lin, Hongbing Shen, Feng Chen
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0223692

Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality
Cited by: 12
Author(s): Scott C. Ritchie, Johannes Kettunen, Marta Brożyńska, Artika P. Nath, Aki S. Havulinna, Satu Männistö, Markus Perola, Veikko Salomaa, Mika Ala‐Korpela, Gad Abraham, Peter Würtz, Michael Inouye
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0187542

Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome
Cited by: 10
Author(s): Anette McLeod, Ellen Færgestad Mosleth, Ida Rud, Filipe Branco dos Santos, Lars-Gustav Snipen, Kristian Hovde Liland, Lars Axelsson
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0170025

Underexpression of Specific Interferon Genes Is Associated with Poor Prognosis of Melanoma
Cited by: 12
Author(s): Aamir Zainulabadeen, Philip Yao, Habil Zare
Software Mentions: 4
Published: over 9 years ago

10.1038/srep13373

Smoking Gun or Circumstantial Evidence? Comparison of Statistical Learning Methods using Functional Annotations for Prioritizing Risk Variants
Cited by: 8
Author(s): Sarah A. Gagliano, Reena Ravji, Michael R. Barnes, Michael E. Weale, Jo Knight
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-018-37449-y

Identification of Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs)
Cited by: 8
Author(s): Almudena Espín-Pérez, Dennie G. A. J. Hebels, Hannu Kiviranta, Panu Rantakokko, Panagiotis Georgiadis, Maria Botsivali, Ingvar A. Bergdahl, Domenico Palli, Florentin Späth, Anders Johansson, Marc Chadeau‐Hyam, Soterios A. Kyrtopoulos, Jos Kleinjans, Theo M. C. M. de Kok
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-56249-6

Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease
Cited by: 10
Author(s): Jessy A. Slota, Sarah J. Medina, Megan Klassen, Damian Gorski, Christine Mesa, Catherine Robertson, Gordon Mitchell, Michael B. Coulthart, Sandra Pritzkow, Claudio Soto, Stephanie A. Booth
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-57542-5

Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic Effects
Cited by: 11
Author(s): И. В. Медведева, Matthew E. Stokes, Dominic Eisinger, Samuel T. LaBrie, Jing Ai, Matthew Trotter, Peter Schäfer, Robert Yang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-77259-9

A novel methylation signature predicts radiotherapy sensitivity in glioma
Cited by: 5
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Zhiliang Wang, Haiyan Jiang, Ye Chen, Renpeng Li, You Zhai, Yuanhao Chang, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-12166-0

A Whole Blood Molecular Signature for Acute Myocardial Infarction
Cited by: 47
Author(s): Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, M. A. Novotny, Roger S. Lasken, Tim Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, K Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-020-73700-1

Transcriptome-wide analysis and modelling of prognostic alternative splicing signatures in invasive breast cancer: a prospective clinical study
Cited by: 16
Author(s): Linbang Wang, Yuanyuan Wang, Bao Su, Ping Yü, Jiahui He, Lei Meng, Qin Xiao, Junling Sun, Kai Zhou, Yuzhou Xue, Jinxiang Tan
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-40403-1

A multimodal approach to cardiovascular risk stratification in patients with type 2 diabetes incorporating retinal, genomic and clinical features
Cited by: 19
Author(s): Ahmed E. Fetit, Alex S.F. Doney, Stephen Hogg, Ruixuan Wang, Tom MacGillivray, Joanna M. Wardlaw, Fergus Doubal, Gareth J. McKay, Stephen J. McKenna, Emanuele Trucco
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-72045-z

A data-driven medication score predicts 10-year mortality among aging adults
Cited by: 3
Author(s): Paavo Häppölä, Aki S. Havulinna, Tõnis Tasa, Nina Mars, Markus Perola, Mikko Kallela, Lili Milani, Seppo Koskinen, Veikko Salomaa, Benjamin M. Neale, Aarno Palotie, Mark J. Daly, Samuli Ripatti
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-37748-4

Association Between Radiomics Signature and Disease-Free Survival in Conventional Papillary Thyroid Carcinoma
Cited by: 28
Author(s): Vivian Youngjean Park, Kyunghwa Han, Eun Jung Lee, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 4
Published: over 7 years ago

10.1155/2018/9157194

Childcare Correlates of Physical Activity, Sedentary Behavior, and Adiposity in Preschool Children: A Cross-Sectional Analysis of the SPLASHY Study
Cited by: 10
Author(s): Amar Arhab, Nadine Messerli‐Bürgy, Tanja H. Kakebeeke, Stefano Lanzi, Kerstin Stülb, Annina Zysset, Claudia S. Leeger‐Aschmann, Einat A. Schmutz, Andrea Meyer, Simone Munsch, Susi Kriemler, Oskar G. Jenni, Jardena J. Puder
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-27707-4

Comprehensive analysis of lung cancer pathology images to discover tumor shape and boundary features that predict survival outcome
Cited by: 71
Author(s): Shidan Wang, Alyssa Chen, Lin Yang, Ling Cai, Yang Xie, Junya Fujimoto, Adi F. Gazdar, Guanghua Xiao
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-021-86921-9

Systematic prediction of drug resistance caused by transporter genes in cancer cells
Cited by: 4
Author(s): Yao Shen, Zhipeng Yan
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-33911-z

Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
Cited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-10324-y

Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-19004-3

Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma
Cited by: 12
Author(s): Eric R. Gamazon, Matthew R. Trendowski, Yujia Wen, Claudia Wing, Shannon M. Delaney, Won Jae Huh, Shan S. Wong, Nancy J. Cox, Eileen Dolan
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-45283-z

Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
Cited by: 61
Author(s): Asuka Oyama, Yasuaki Hiraoka, Ippei Obayashi, Yusuke Saikawa, Shigeru Furui, Kenshiro Shiraishi, Shinobu Kumagai, Tatsuya Hayashi, J. Kotoku
Software Mentions: 4
Published: about 7 years ago

10.1093/jxb/eraa302

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species
Cited by: 24
Author(s): Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, Catherine Deborde, Laëtitia Fouillen, Pierre Van Delft, Daniel Jacob, Björn Usadel, Zhanwu Dai, Michel Génard, Gilles Vercambre, Sophie Colombié, Annick Moing, Yves Gibon
Software Mentions: 3
Published: about 6 years ago

10.1038/srep17282

Protein profiling reveals consequences of lifestyle choices on predicted biological aging
Cited by: 35
Author(s): Stefan Enroth, Sofia Bosdotter Enroth, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-018-24519-4

A four-microRNA classifier as a novel prognostic marker for tumor recurrence in stage II colon cancer
Cited by: 30
Author(s): Havjin Jacob, Luka Stanisavljević, Kristian Eeg Storli, Kjersti Elvestad Hestetun, Olav Dahl, Mette Pernille Myklebust
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-021-84048-5

Utility of CT texture analysis to differentiate olfactory neuroblastoma from sinonasal squamous cell carcinoma
Cited by: 4
Author(s): Masaki Ogawa, Satoshi Osaga, Norio Shiraki, Daisuke Kawakita, Nobuhiro Hanai, Tsuneo Tamaki, Satoshi Tsukahara, Tatsuro Kawaguchi, Misugi Urano, Yuta Shibamoto
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-35232-7

Lipoprotein markers associated with disability from multiple sclerosis
Cited by: 27
Author(s): Arie Gafson, Thomas Thorne, Colonel Mckechnie, Beatriz Jiménez, Richard Nicholas, Paul M. Matthews
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-38441-2

Elastic net-based prediction of IFN-β treatment response of patients with multiple sclerosis using time series microarray gene expression profiles
Cited by: 11
Author(s): Arika Fukushima, Masahiro Sugimoto, Satoru Hiwa, Tomoyuki Hiroyasu
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-53428-3

Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-85991-z

Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohort
Cited by: 3
Author(s): Isabel Drake, George Hindy, Peter Almgren, Gunnar Engström, Jan Nilsson, Olle Melander, Marju Orho‐Melander
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-61589-9

Analysis of SNP Array Abnormalities in Patients with DE NOVO Acute Myeloid Leukemia with Normal Karyotype
Cited by: 7
Author(s): Mariam Ibáñez, Esperanza Such, Esther Onecha, Inés Gómez-Seguí, Alessandro Liquori, Jorge Sellés, David Hervás‐Marín, Eva Barragán, Rosa Ayala, Marta Llop, Maria López-Pavía, Inmaculada Rapado, Alexander Neef, Alejandra Sanjuán-Pla, Claudia Sargas, Elisa González-Romero, Mireia Boluda-Navarro, Rafa Andreu, Leonor Senent, Pau Montesinos, Joaquín Martínez‐López, Miguel Á. Sanz, Guillermo Sanz, José Cervera
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-65040-x

Machine-learning based exploration of determinants of gray matter volume in the KORA-MRI study
Cited by: 3
Author(s): Franziska Galiè, Susanne Rospleszcz, Daniel Keeser, Ebba Beller, Ben Illigens, Roberto Lorbeer, Sergio Grosu, Sonja Selder, Sigrid Auweter, Christopher L. Schlett, Wolfgang Rathmann, Lars Schwettmann, Karl‐Heinz Ladwig, Jakob Linseisen, Annette Peters, Fabian Bamberg, Birgit Ertl‐Wagner, Sophia Stoecklein
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-68383-7

A nomogram model for screening the risk of diabetes in a large-scale Chinese population: an observational study from 345,718 participants
Cited by: 9
Author(s): Mingyue Xue, Yinxia Su, Zuyong Feng, Shuxia Wang, Mingchen Zhang, Kai Wang, Hua Yao
Software Mentions: 3
Published: about 6 years ago

10.1073/pnas.1811661116

Chloroplast competition is controlled by lipid biosynthesis in evening primroses
Cited by: 32
Author(s): Johanna Sobanski, Patrick Giavalisco, Axel Fischer, Julia M. Kreiner, Dirk Walther, Mark Aurel Schöttler, Tommaso Pellizzer, Hieronim Golczyk, Toshihiro Obata, Ralph Bock, Barbara B. Sears, Stephan Greiner
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-021-83167-3

Radiomics signature on CECT as a predictive factor for invasiveness of lung adenocarcinoma manifesting as subcentimeter ground glass nodules
Cited by: 9
Author(s): Wufei Chen, Ming Li, Dingbiao Mao, Xianping Ge, Jiaofeng Wang, Min Tan, Wenrui Ma, Xuemei Huang, Jingyu Lu, Cheng Li, Yanqing Hua, Hao Wu
Software Mentions: 3
Published: over 5 years ago

10.1038/srep31619

Multitask learning improves prediction of cancer drug sensitivity
Cited by: 77
Author(s): Han Yuan, Ivan Paskov, Hristo S. Paskov, Álvaro González, Christina Leslie
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep43752

Noninvasive scoring system for significant inflammation related to chronic hepatitis B
Cited by: 6
Author(s): Mei‐Zhu Hong, Linglong Ye, Lixin Jin, Yandan Ren, Xiang Yu, Xiaobin Liu, Ru-Mian Zhang, Kuangnan Fang, Jin‐Shui Pan
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-03199-6

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
Cited by: 11
Author(s): Munazah Andrabi, Andrew P. Hutchins, Diego Miranda‐Saavedra, Hidetoshi Kono, Ruth Nussinov, Kenji Mizuguchi, Shandar Ahmad
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0229509

Comparing spatial regression to random forests for large environmental data sets
Cited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 6 years ago

10.7150/jca.57231

A clinical prediction model identifies a subgroup with inferior survival within intermediate risk acute myeloid leukemia
Cited by: 8
Author(s): Xiaoxia Hu, Bianhong Wang, Qi Chen, Aijie Huang, Weijia Fu, Lixia Liu, Ying Zhang, Gusheng Tang, Hui Cheng, Xiong Ni, Lei Gao, Jie Chen, Li Chen, Weiping Zhang, Jianmin Yang, Shanbo Cao, Li Yu, Jianmin Wang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12935-020-1104-7

Immune-related gene signature for predicting the prognosis of head and neck squamous cell carcinoma
Cited by: 47
Author(s): Yangyang She, Xiangbo Kong, Yaping Ge, Ping Yin, Yong Li, Jieyu Chen, Feng Gao, Si-Lian Fang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0177286

Functional data analysis of sleeping energy expenditure
Cited by: 4
Author(s): Jong Soo Lee, Issa Zakeri, Nancy F. Butte
Software Mentions: 3
Published: over 9 years ago

10.1186/1755-8794-4-26

Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients
Cited by: 107
Author(s): Michael Elashoff, James A. Wingrove, Philip Beineke, Susan E. Daniels, Whittemore G. Tingley, Steven Rosenberg, Szilárd Vörös, William E. Kraus, Geoffrey S. Ginsburg, Robert S. Schwartz, Stephen G. Ellis, Naheem Tahirkheli, Ron Waksman, John McPherson, Alexandra J. Lansky, Eric J. Topol
Software Mentions: 3
Published: over 15 years ago

10.1186/s40644-021-00407-5

Application of contrast-enhanced CT radiomics in prediction of early recurrence of locally advanced oesophageal squamous cell carcinoma after trimodal therapy
Cited by: 13
Author(s): Shengjun Tang, Jing Ou, Jun Liu, Yu Wu, Changqiang Wu, Tianwu Chen, Xiaoming Zhang, Rui Li, Mengjie Tang, Yang Long, Bang-guo Tan, Fulin Lu, Jiani Hu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12866-020-01829-0

Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
Cited by: 26
Author(s): Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey R. Brook, Stuart E. Turvey, Theo J. Moraes, Allan B. Becker, Piushkumar J. Mandhane, Malcolm R. Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B. Azad
Software Mentions: 3
Published: about 6 years ago

10.3390/vaccines8010004

Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses
Cited by: 21
Author(s): Muktha S. Natrajan, Nadine Rouphael, Lilin Lai, Dmitri Kazmin, Travis L. Jensen, David S. Weiss, Chris Ibegbu, Marcelo B. Sztein, William F. Hooper, Heather Hill, Evan J. Anderson, Robert A. Johnson, Patrick Sanz, Bali Pulendran, Johannes Goll, Mark J. Mulligan
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-018-1514-1

Epigenetic prediction of complex traits and death
Cited by: 133
Author(s): Daniel L. McCartney, Robert F. Hillary, Anna J. Stevenson, Stuart J. Ritchie, Richard M Martin, Qian Zhang, Stewart W. Morris, Mairead Lesley Bermingham, Archie Campbell, Alison Murray, Heather C. Whalley, Catharine R. Galé, David J. Porteous, Chris Haley, Allan F. McRae, Naomi R. Wray, Peter M. Visscher, Andrew M. McIntosh, Kathryn Evans, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0243250

Medical students in distress: The impact of gender, race, debt, and disability
Cited by: 27
Author(s): Nikhil Rajapuram, Simone Langness, Megan Marshall, Amanda Sammann
Software Mentions: 3
Published: over 5 years ago

10.2196/12214

Improved Real-Time Influenza Surveillance: Using Internet Search Data in Eight Latin American Countries
Cited by: 27
Author(s): Leonardo Clemente, Fred Lu, Mauricio Santillana
Software Mentions: 3
Published: over 7 years ago

10.3390/genes9020078

DNA Methylation and All-Cause Mortality in Middle-Aged and Elderly Danish Twins
Cited by: 26
Author(s): Anne Marie Svane, Mette Soerensen, Jesper Lund, Qihua Tan, Juulia Jylhävä, Yunzhang Wang, Nancy L. Pedersen, Sara Hägg, Birgit Debrabant, Ian J. Deary, Kaare Christensen, Lene Christiansen, Jacob Hjelmborg
Software Mentions: 3
Published: over 8 years ago

10.3389/fphys.2015.00389

Different Predictors of Right and Left Ventricular Metabolism in Healthy Middle-Aged Men
Cited by: 9
Author(s): Marja A. Heiskanen, Tuija Leskinen, Jari-Joonas Eskelinen, Ilkka Heinonen, Eliisa Löyttyniemi, Kirsi A. Virtanen, Jussi P. Pärkkä, Jarna C. Hannukainen, Kari K. Kalliokoski
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.5643

Analysis of relative abundances with zeros on environmental gradients: a multinomial regression model
Cited by: 7
Author(s): Fiona Chong, Matthew Spencer
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: almost 10 years ago

10.7150/jca.51079

Infiltrating Immune Cells in Gastric Cancer: A Novel Predicting Model for Prognosis
Cited by: 6
Author(s): Wenjie Li, Mengting Li, Haizhou Wang, Yanan Peng, Shouquan Dong, Yuanyuan Lu, Fan Wang, Fei Xu, Lan Liu, Qiu Zhao
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.612952

A 13-Gene Metabolic Prognostic Signature Is Associated With Clinical and Immune Features in Stomach Adenocarcinoma
Cited by: 17
Author(s): Zaisheng Ye, Miao Zheng, Yi Zeng, Shenghong Wei, He Huang, Yi Wang, Qinying Liu, Zhitao Lin, Chen Shu, Qinqin Zheng, Luchuan Chen
Software Mentions: 3
Published: about 5 years ago

10.7150/jca.52439

Novel biomarkers and prediction model for the pathological complete response to neoadjuvant treatment of triple-negative breast cancer
Cited by: 4
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: over 5 years ago

10.1186/s40644-020-00320-3

A CT-based radiomics nomogram for prediction of lung adenocarcinomas and granulomatous lesions in patient with solitary sub-centimeter solid nodules
Cited by: 26
Author(s): Xiangmeng Chen, Feng Bao, Yehang Chen, Kunfeng Liu, Kunwei Li, Xiaobei Duan, Yongqiang Hao, Enming Cui, Zhuangsheng Liu, Chaotong Zhang, Wansheng Long, Xueguo Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2020.567512

Prognostic Implications of Novel Ten-Gene Signature in Uveal Melanoma
Cited by: 25
Author(s): Huan Luo, Chi Ma, Jing Shao, Jing Cao
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0222641

Automated clear cell renal carcinoma grade classification with prognostic significance
Cited by: 34
Author(s): Ke Tian, Christopher A. Rubadue, Douglas I. Lin, Mitko Veta, Michael E. Pyle, Humayun Irshad, Yujing J. Heng
Software Mentions: 3
Published: almost 7 years ago

10.1093/gigascience/giaa076

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network
Cited by: 30
Author(s): Xiang Zhou, Hua Chai, Huiying Zhao, Ching Hsing Luo, Yuedong Yang
Software Mentions: 3
Published: about 6 years ago

10.3390/genes11101181

In Silico Model for Chemical-Induced Chromosomal Damages Elucidates Mode of Action and Irrelevant Positives
Cited by: 4
Author(s): Yuzo Fujita, Osamu Morita, Hiroshi Honda
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.571189

An Autophagy-Related Gene Signature Associated With Clinical Prognosis and Immune Microenvironment in Gliomas
Cited by: 28
Author(s): Yu Xu, Renpeng Li, Xiaoxia Li, Naijun Dong, Di Wu, Haoran Lin, Kan Yin, Chunhua Zhao
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.01621

Deep Learning-Based Radiomics of B-Mode Ultrasonography and Shear-Wave Elastography: Improved Performance in Breast Mass Classification
Cited by: 34
Author(s): Xiang Zhang, Liang Ming, Zehong Yang, Chushan Zheng, Jiayi Wu, Bing Ou, Haojiang Li, Xiaoyan Wu, Baoming Luo, Jun Shen
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0219128

Linking forest management to moose population trends: The role of the nutritional landscape
Cited by: 21
Author(s): Thomas V. Schrempp, Janet L. Rachlow, Timothy R. Johnson, Lisa A. Shipley, Ryan A. Long, Jocelyn L. Aycrigg, Mark A. Hurley
Software Mentions: 3
Published: about 7 years ago

10.1186/s41512-016-0002-x

Validation and updating of risk models based on multinomial logistic regression
Cited by: 23
Author(s): Ben Van Calster, Kirsten Van Hoorde, Yvonne Vergouwe, S. Bobdiwala, G. Condous, E. Kirk, T. Bourne, Ewout W. Steyerberg
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0155354

Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma
Cited by: 4
Author(s): Atefeh Lafzi, Hilal Kazan
Software Mentions: 3
Published: over 10 years ago

10.1186/s40644-019-0197-5

CT-based peritumoral radiomics signatures to predict early recurrence in hepatocellular carcinoma after curative tumor resection or ablation
Cited by: 105
Author(s): Quanyuan Shan, Hang-Tong Hu, Shi‐Ting Feng, Zhenpeng Peng, Shu‐Ling Chen, Qian Zhou, Xin Li, Xian-Jin Xie, Ming‐De Lu, Wei Wang, Ming Kuang
Software Mentions: 3
Published: over 7 years ago

10.1007/s00125-019-05052-z

Predicting renal disease progression in a large contemporary cohort with type 1 diabetes mellitus
Cited by: 21
Author(s): Marco Colombo, Stuart J. McGurnaghan, Samira Bell, Finlay MacKenzie, A. W. Patrick, John R. Petrie, John McKnight, Sandra MacRury, Jamie P. Traynor, Wendy Metcalfe, Paul McKeigue, Helen M. Colhoun
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.620246

Radiomics Study for Predicting the Expression of PD-L1 and Tumor Mutation Burden in Non-Small Cell Lung Cancer Based on CT Images and Clinicopathological Features
Cited by: 25
Author(s): Qiang Wen, Zhe Yang, Hui Dai, Alei Feng, Qiang Li
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2020.610691

Computer Tomography Radiomics-Based Nomogram in the Survival Prediction for Brain Metastases From Non-Small Cell Lung Cancer Underwent Whole Brain Radiotherapy
Cited by: 9
Author(s): Ji Zhang, Juebin Jin, Yao Ai, Kecheng Zhu, Chengjian Xiao, Conghua Xie, Xiance Jin
Software Mentions: 3
Published: over 5 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607