Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month

Papers Mentioning glmnet 1,607

10.1186/s12874-016-0254-8
Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application
Cited by: 119
Author(s): Monica M. Vasquez, Chengcheng Hu, Denise J. Roe, Zhao Chen, Marilyn Halonen, Stefano Guerra
Software Mentions: 4
Published: about 8 years ago
10.3389/fonc.2020.01057
Prognostic and Predictive Value of a Long Non-coding RNA Signature in Glioma: A lncRNA Expression Analysis
Cited by: 12
Author(s): Yutong Pan, Yiping Zhu, Qingwei Zhang, Chihao Zhang, Anwen Shao, Jianmin Zhang
Software Mentions: 4
Published: over 4 years ago
10.1186/s12885-021-08478-0
Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
Cited by: 18
Author(s): Hongyu Li, Xiliu Zhang, Yi Chen, Yi He, Xun Chen, Wei Zhao, Dongsheng Yu
Software Mentions: 4
Published: over 3 years ago
10.1093/gigascience/giaa044
Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity
Cited by: 9
Author(s): Benjamin B. Chu, Kevin L. Keys, Christopher A. German, Hua Zhou, Jin Zhou, Eric M. Sobel, Janet S. Sinsheimer, Kenneth Lange
Software Mentions: 4
Published: over 4 years ago
10.7717/peerj.11074
Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.544979
Machine Learning-Based Ultrasomics Improves the Diagnostic Performance in Differentiating Focal Nodular Hyperplasia and Atypical Hepatocellular Carcinoma
Cited by: 12
Author(s): Wei Li, Xiaozhou Lv, Xin Zheng, Si-Min Ruan, Hang-Tong Hu, Li-Da Chen, Yang Huang, Xin Li, Chu-Qing Zhang, Xian-Jin Xie, Ming Kuang, Ming‐De Lu, Bowen Zhuang, Wei Wang
Software Mentions: 4
Published: over 3 years ago
10.1186/s12880-021-00633-0
Radiomic analysis of Gd-EOB-DTPA-enhanced MRI predicts Ki-67 expression in hepatocellular carcinoma
Cited by: 19
Author(s): Yanfen Fan, Yanxia Yu, Ximing Wang, Mengjie Hu, Chunhong Hu
Software Mentions: 4
Published: over 3 years ago
10.1016/j.ajpath.2017.11.007
Fibroblasts Promote Inflammation and Pain via IL-1α Induction of the Monocyte Chemoattractant Chemokine (C-C Motif) Ligand 2
Cited by: 22
Author(s): Hannah L Paish, Nicolas Stewart Kalson, Graham R. Smith, Alicia del Carpio Pons, Thomas E. Baldock, Nicholas I. Smith, Katarzyna Swist-Szulik, David J. Weir, Michelle Bardgett, David J. Deehan, Derek A. Mann, Lee A. Borthwick
Software Mentions: 4
Published: over 6 years ago
10.1186/s12880-019-0355-z
Computed tomography-based predictive nomogram for differentiating primary progressive pulmonary tuberculosis from community-acquired pneumonia in children
Cited by: 21
Author(s): Bei Wang, Min Li, He Ma, Fangfang Han, Yan Wang, Shunying Zhao, Zhimin Liu, Tao Yu, Jie Tian, Di Dong, Yun Peng
Software Mentions: 4
Published: over 5 years ago
10.1186/s12880-021-00564-w
CT-based radiomics combined with signs: a valuable tool to help radiologist discriminate COVID-19 and influenza pneumonia
Cited by: 14
Author(s): Yurong Huang, Zhenguang Zhang, Siyun Liu, Xiang Li, Yaewon Yang, Jiyao Ma, Zhipeng Li, Jialong Zhou, Yuanming Jiang, Bo He
Software Mentions: 4
Published: almost 4 years ago
10.3389/fonc.2019.01269
An Integrated Three-Long Non-coding RNA Signature Predicts Prognosis in Colorectal Cancer Patients
Cited by: 27
Author(s): Yuhang Liu, Bingxin Liu, Guoying Jin, Jia Zhang, Xue Wang, Yuyang Feng, Zehua Bian, Bojian Fei, Yuan Yin, Zhaohui Huang
Software Mentions: 4
Published: about 5 years ago
10.1007/s00259-020-04814-x
Individual brain metabolic connectome indicator based on Kullback-Leibler Divergence Similarity Estimation predicts progression from mild cognitive impairment to Alzheimer’s dementia
Cited by: 45
Author(s): Min Wang, Jiehui Jiang, Zhuangzhi Yan, Ian Alberts, Jingjie Ge, Huiwei Zhang, Chuantao Zuo, Jin‐Tai Yu, Axel Rominger, Kuangyu Shi, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-020-77259-9
A novel methylation signature predicts radiotherapy sensitivity in glioma
Cited by: 5
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Zhiliang Wang, Haiyan Jiang, Ye Chen, Renpeng Li, You Zhai, Yuanhao Chang, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-018-37449-y
Identification of Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs)
Cited by: 8
Author(s): Almudena Espín-Pérez, Dennie G. A. J. Hebels, Hannu Kiviranta, Panu Rantakokko, Panagiotis Georgiadis, Maria Botsivali, Ingvar A. Bergdahl, Domenico Palli, Florentin Späth, Anders Johansson, Marc Chadeau‐Hyam, Soterios A. Kyrtopoulos, Jos Kleinjans, Theo M. C. M. de Kok
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-73700-1
Transcriptome-wide analysis and modelling of prognostic alternative splicing signatures in invasive breast cancer: a prospective clinical study
Cited by: 16
Author(s): Linbang Wang, Yuanyuan Wang, Bao Su, Ping Yü, Jiahui He, Lei Meng, Qin Xiao, Junling Sun, Kai Zhou, Yuzhou Xue, Jinxiang Tan
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-020-72045-z
A data-driven medication score predicts 10-year mortality among aging adults
Cited by: 3
Author(s): Paavo Häppölä, Aki S. Havulinna, Tõnis Tasa, Nina Mars, Markus Perola, Mikko Kallela, Lili Milani, Seppo Koskinen, Veikko Salomaa, Benjamin M. Neale, Aarno Palotie, Mark J. Daly, Samuli Ripatti
Software Mentions: 4
Published: about 4 years ago
10.1007/s11356-019-05689-8
Acute effect of daily fine particulate matter pollution on cerebrovascular mortality in Shanghai, China: a population-based time series study
Cited by: 12
Author(s): Khadija Akter Leepe, Mei Li, Xin Fang, Ayako Hiyoshi, Yang Cao
Software Mentions: 4
Published: over 5 years ago
10.1038/srep13373
Smoking Gun or Circumstantial Evidence? Comparison of Statistical Learning Methods using Functional Annotations for Prioritizing Risk Variants
Cited by: 8
Author(s): Sarah A. Gagliano, Reena Ravji, Michael R. Barnes, Michael E. Weale, Jo Knight
Software Mentions: 4
Published: over 9 years ago
10.1038/s41598-019-56249-6
Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease
Cited by: 10
Author(s): Jessy A. Slota, Sarah J. Medina, Megan Klassen, Damian Gorski, Christine Mesa, Catherine Robertson, Gordon Mitchell, Michael B. Coulthart, Sandra Pritzkow, Claudio Soto, Stephanie A. Booth
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-019-40403-1
A multimodal approach to cardiovascular risk stratification in patients with type 2 diabetes incorporating retinal, genomic and clinical features
Cited by: 19
Author(s): Ahmed E. Fetit, Alex S.F. Doney, Stephen Hogg, Ruixuan Wang, Tom MacGillivray, Joanna M. Wardlaw, Fergus Doubal, Gareth J. McKay, Stephen J. McKenna, Emanuele Trucco
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2021.647521
Exploration of Prognostic Biomarkers for Lung Adenocarcinoma Through Bioinformatics Analysis
Cited by: 9
Author(s): Zhengliang Tu, Xue He, Liping Zeng, Di Meng, Runzhou Zhuang, Jiangang Zhao, Wanrong Dai
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-018-37748-4
Association Between Radiomics Signature and Disease-Free Survival in Conventional Papillary Thyroid Carcinoma
Cited by: 28
Author(s): Vivian Youngjean Park, Kyunghwa Han, Eun Jung Lee, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2021.736423
Comprehensive Analysis of Splicing Factor and Alternative Splicing Event to Construct Subtype-Specific Prognosis-Predicting Models for Breast Cancer
Cited by: 4
Author(s): He Zhang, Baoai Han, Xingxing Han, Yuying Zhu, Hui Liu, Zhiyong Wang, Yanfen Cui, Ran Tian, Zicong Gao, Ruinan Tian, Sixin Ren, Xiaoyan Zuo, Jianfei Tian, Fei Zhang, Ruifang Niu
Software Mentions: 4
Published: about 3 years ago
10.3389/fcell.2021.670854
Integrative Analysis of DNA Methylation and Transcriptome Identifies a Predictive Epigenetic Signature Associated With Immune Infiltration in Gliomas
Cited by: 7
Author(s): Jianlei Zhang, Yin Jiang, Li Luo, Dongzhou Huang, Dongfeng Zhai, Ge Wang, Ning Xu, Minqiang Yang, Ying Song, Guopei Zheng, Qiong Zhang
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2019.01119
Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2020.612840
Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
Cited by: 3
Author(s): Phillipe Loher, Nestoras Karathanasis
Software Mentions: 4
Published: almost 4 years ago
10.3389/fgene.2020.00989
Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-017-10324-y
Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: about 7 years ago
10.3389/fcell.2021.699212
A Novel Six Metastasis-Related Prognostic Gene Signature for Patients With Osteosarcoma
Cited by: 12
Author(s): Di Zheng, Kezhou Xia, Ling Yu, Changtian Gong, Yubo Shi, Wěi Li, Yonglong Qiu, Jian Yang, Weichun Guo
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-017-12166-0
A Whole Blood Molecular Signature for Acute Myocardial Infarction
Cited by: 47
Author(s): Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, M. A. Novotny, Roger S. Lasken, Tim Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, K Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol
Software Mentions: 4
Published: about 7 years ago
10.3389/fgene.2021.652601
Construction and Comprehensive Prognostic Analysis of a lncRNA–miRNA–mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer
Cited by: 8
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Chuan Qin, Han Zhang, Ziwei Wang
Software Mentions: 4
Published: over 3 years ago
10.3389/fcell.2021.646982
Identification of an Immune-Related Risk Signature Correlates With Immunophenotype and Predicts Anti-PD-L1 Efficacy of Urothelial Cancer
Cited by: 7
Author(s): Pengju Li, Shihui Hao, Yongkang Ye, Jinhuan Wei, Yuanyan Tang, Liang Tan, Zhuangyao Liao, Mingxiao Zhang, Jiaying Li, Chengpeng Gui, Jiefei Xiao, Yong Huang, Xu Chen, Jianping Cao, Junhang Luo, Wei Chen
Software Mentions: 4
Published: over 3 years ago
10.3389/fcell.2021.709241
Characterization of Immune-Related Long Non-coding RNAs to Construct a Novel Signature and Predict the Prognosis and Immune Landscape of Soft Tissue Sarcoma
Cited by: 1
Author(s): Zhengjun Lin, Ke Pang, Hongli Liu, Xianghong Zhang, Jia Wan, Tao Zheng, Tang Liu, Weijun Peng
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-017-19004-3
Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma
Cited by: 12
Author(s): Eric R. Gamazon, Matthew R. Trendowski, Yujia Wen, Claudia Wing, Shannon M. Delaney, Won Jae Huh, Shan S. Wong, Nancy J. Cox, Eileen Dolan
Software Mentions: 4
Published: almost 7 years ago
10.3389/fendo.2021.677919
Clinical and Radiological Predictors of Biochemical Response to First-Line Treatment With Somatostatin Receptor Ligands in Acromegaly: A Real-Life Perspective
Cited by: 12
Author(s): Federica Nista, Giuliana Corica, Lara Castelletti, Keyvan Khorrami, Claudia Campana, Francesco Cocchiara, Gabriele Zoppoli, Alessandro Prior, Diego Criminelli Rossi, Gianluigi Zona, Diego Ferone, Federico Gatto
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.670405
Construction of a Nine-MicroRNA-Based Signature to Predict the Overall Survival of Esophageal Cancer Patients
Cited by: 2
Author(s): Xiaobin Zhang, Yi He, Haiyong Gu, Zhichao Liu, Bin Li, Yang Yang, Jie Hao, Hua Ren
Software Mentions: 4
Published: over 3 years ago
10.1186/s40001-017-0270-0
Using automated texture features to determine the probability for masking of a tumor on mammography, but not ultrasound
Cited by: 5
Author(s): Lothar Häberle, Carolin C. Hack, Katharina Heusinger, Florian Wagner, Sebastian M. Jud, Michael Uder, Matthias W. Beckmann, Rüdiger Schulz‐Wendtland, Thomas Wittenberg, Peter A. Fasching
Software Mentions: 4
Published: about 7 years ago
10.3389/fgene.2019.00493
Genome-Wide Analysis of Lung Adenocarcinoma Identifies Novel Prognostic Factors and a Prognostic Score
Cited by: 10
Author(s): Donglai Chen, Yueqiang Song, Fuquan Zhang, Xiaofan Wang, Erjia Zhu, Xi Zhang, Gening Jiang, Siguang Li, Chang Chen, Yongbing Chen
Software Mentions: 4
Published: over 5 years ago
10.3389/fnagi.2021.609043
Ongoing Oscillatory Electrophysiological Alterations in Frail Older Adults: A MEG Study
Cited by: 4
Author(s): Isabel Suárez-Méndez, Stefan Walter, David López‐Sanz, Natalia Pasquín, R. López Bernabé, Ernesto Castillo Gallo, Myriam Valdés, Francisco del Pozo, Fernando Maestú, Leocadio Rodrı́guez-Mañas
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-86921-9
Systematic prediction of drug resistance caused by transporter genes in cancer cells
Cited by: 4
Author(s): Yao Shen, Zhipeng Yan
Software Mentions: 4
Published: over 3 years ago
10.1155/2018/9157194
Childcare Correlates of Physical Activity, Sedentary Behavior, and Adiposity in Preschool Children: A Cross-Sectional Analysis of the SPLASHY Study
Cited by: 10
Author(s): Amar Arhab, Nadine Messerli‐Bürgy, Tanja H. Kakebeeke, Stefano Lanzi, Kerstin Stülb, Annina Zysset, Claudia S. Leeger‐Aschmann, Einat A. Schmutz, Andrea Meyer, Simone Munsch, Susi Kriemler, Oskar G. Jenni, Jardena J. Puder
Software Mentions: 4
Published: about 6 years ago
10.1007/s00394-018-1767-1
Metabolite profiles evaluated, according to sex, do not predict resting energy expenditure and lean body mass in healthy non-obese subjects
Cited by: 8
Author(s): M. Armbruster, M Rist, Stephanie Seifert, Lara Frommherz, Christoph H. Weinert, Carina Mack, Alexander Röth, Benedikt Merz, Diana Bunzel, Ralf Krüger, Sabine E. Kulling, Bernhard Watzl, Achim Bub
Software Mentions: 4
Published: over 6 years ago
10.3389/fdata.2021.672460
Comprehensive Data Integration Approach to Assess Immune Responses and Correlates of RTS,S/AS01-Mediated Protection From Malaria Infection in Controlled Human Malaria Infection Trials
Cited by: 5
Author(s): William Chad Young, Lindsay N. Carpp, Sidhartha Chaudhury, Jason A. Regules, Elke S. Bergmann‐Leitner, Christian F. Ockenhouse, Ulrike Wille-Reece, Allan C. deCamp, Ellis Hughes, Celia Mahoney, Suresh Pallikkuth, Savita Pahwa, S. Moses Dennison, Sarah V. Mudrak, S. Munir Alam, Kelly E. Seaton, Rachel L. Spreng, Jon Fallon, Ashlin Michell, Fernando Ulloa‐Montoya, Margherita Coccia, Erik Jongert, Galit Alter, Georgia D. Tomaras, Raphaël Gottardo
Software Mentions: 4
Published: over 3 years ago
10.1289/EHP172
A Systematic Comparison of Linear Regression–Based Statistical Methods to Assess Exposome-Health Associations
Cited by: 143
Author(s): Lydiane Agier, Lützen Portengen, Marc Chadeau‐Hyam, Xavier Basagaña, Lise Giorgis-Allemand, Valérie Siroux, Oliver Robinson, Jelle Vlaanderen, Juan R. González, Mark Nieuwenhuijsen, Paolo Víneis, Martine Vrijheid, Rémy Slama, Roel Vermeulen
Software Mentions: 4
Published: almost 8 years ago
10.1038/s41598-019-45283-z
Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
Cited by: 61
Author(s): Asuka Oyama, Yasuaki Hiraoka, Ippei Obayashi, Yusuke Saikawa, Shigeru Furui, Kenshiro Shiraishi, Shinobu Kumagai, Tatsuya Hayashi, J. Kotoku
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-018-27707-4
Comprehensive analysis of lung cancer pathology images to discover tumor shape and boundary features that predict survival outcome
Cited by: 71
Author(s): Shidan Wang, Alyssa Chen, Lin Yang, Ling Cai, Yang Xie, Junya Fujimoto, Adi F. Gazdar, Guanghua Xiao
Software Mentions: 4
Published: over 6 years ago
10.3389/fgene.2021.699385
Analysis of Immune–Stromal Score-Based Gene Signature and Molecular Subtypes in Osteosarcoma: Implications for Prognosis and Tumor Immune Microenvironment
Cited by: 3
Author(s): Dingzhao Zheng, Kai-Chun Yang, Xinjiang Chen, Yongwu Li, Yongchun Chen
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-018-33911-z
Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
Cited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: about 6 years ago
10.1186/s12940-019-0482-6
Two-step approach for assessing the health effects of environmental chemical mixtures: application to simulated datasets and real data from the Navajo Birth Cohort Study
Cited by: 4
Author(s): Li Luo, Laurie G. Hudson, Johnnye Lewis, Ji‐Hyun Lee
Software Mentions: 4
Published: over 5 years ago
10.1007/s00330-018-5444-9
Association of subchondral bone texture on magnetic resonance imaging with radiographic knee osteoarthritis progression: data from the Osteoarthritis Initiative Bone Ancillary Study
Cited by: 29
Author(s): James Mackay, Geeta Kapoor, Jeffrey B. Driban, Grace H. Lo, Timothy E. McAlindon, Andoni P. Toms, Andrew W. McCaskie, Fiona J. Gilbert
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-020-57542-5
Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic Effects
Cited by: 11
Author(s): И. В. Медведева, Matthew E. Stokes, Dominic Eisinger, Samuel T. LaBrie, Jing Ai, Matthew Trotter, Peter Schäfer, Robert Yang
Software Mentions: 4
Published: almost 5 years ago
10.1007/s00330-020-07624-9
A PET/CT nomogram incorporating SUVmax and CT radiomics for preoperative nodal staging in non-small cell lung cancer
Cited by: 20
Author(s): Yunming Xie, Hongguang Zhao, Yan Guo, Fanyang Meng, Xiangchun Liu, Yiying Zhang, Xiaochen Huai, Qianting Wong, Yu Fu, Huimao Zhang
Software Mentions: 4
Published: almost 4 years ago
10.1073/pnas.1811661116
Chloroplast competition is controlled by lipid biosynthesis in evening primroses
Cited by: 32
Author(s): Johanna Sobanski, Patrick Giavalisco, Axel Fischer, Julia M. Kreiner, Dirk Walther, Mark Aurel Schöttler, Tommaso Pellizzer, Hieronim Golczyk, Toshihiro Obata, Ralph Bock, Barbara B. Sears, Stephan Greiner
Software Mentions: 3
Published: over 5 years ago
10.1038/srep43752
Noninvasive scoring system for significant inflammation related to chronic hepatitis B
Cited by: 6
Author(s): Mei‐Zhu Hong, Linglong Ye, Lixin Jin, Yandan Ren, Xiang Yu, Xiaobin Liu, Ru-Mian Zhang, Kuangnan Fang, Jin‐Shui Pan
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-017-03199-6
Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
Cited by: 11
Author(s): Munazah Andrabi, Andrew P. Hutchins, Diego Miranda‐Saavedra, Hidetoshi Kono, Ruth Nussinov, Kenji Mizuguchi, Shandar Ahmad
Software Mentions: 3
Published: over 7 years ago
10.1007/s00405-019-05687-z
Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluation
Cited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: about 5 years ago
10.3389/fchem.2020.00738
Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation
Cited by: 3
Author(s): Giulia Biosa, Diana Giurghita, Eugenio Alladio, Marco Vincenti, Tereza Neocleous
Software Mentions: 3
Published: about 4 years ago
10.3389/fdata.2021.572532
Evaluating the Effectiveness of Personalized Medicine With Software
Cited by: 6
Author(s): Adam Kapelner, Justin Bleich, Alina Levine, Zachary D. Cohen, Robert J. DeRubeis, Richard A. Berk
Software Mentions: 3
Published: over 3 years ago
10.3389/fcell.2021.651406
A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma
Cited by: 28
Author(s): Zheng Yang, He Tian, Zheng Zhou, Xiao Chu, Hengchang Liu, Yu Liu, Li-Yu Wang, Tao Fan, Bo Zheng, Fengwei Tan, Qi Xue, Gengshu Gao, Chunxiang Li, Jie He
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-24519-4
A four-microRNA classifier as a novel prognostic marker for tumor recurrence in stage II colon cancer
Cited by: 30
Author(s): Havjin Jacob, Luka Stanisavljević, Kristian Eeg Storli, Kjersti Elvestad Hestetun, Olav Dahl, Mette Pernille Myklebust
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-021-85991-z
Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohort
Cited by: 3
Author(s): Isabel Drake, George Hindy, Peter Almgren, Gunnar Engström, Jan Nilsson, Olle Melander, Marju Orho‐Melander
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-35232-7
Lipoprotein markers associated with disability from multiple sclerosis
Cited by: 27
Author(s): Arie Gafson, Thomas Thorne, Colonel Mckechnie, Beatriz Jiménez, Richard Nicholas, Paul M. Matthews
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-021-84048-5
Utility of CT texture analysis to differentiate olfactory neuroblastoma from sinonasal squamous cell carcinoma
Cited by: 4
Author(s): Masaki Ogawa, Satoshi Osaga, Norio Shiraki, Daisuke Kawakita, Nobuhiro Hanai, Tsuneo Tamaki, Satoshi Tsukahara, Tatsuro Kawaguchi, Misugi Urano, Yuta Shibamoto
Software Mentions: 3
Published: over 3 years ago
10.3389/fdata.2020.00018
Theory In, Theory Out: The Uses of Social Theory in Machine Learning for Social Science
Cited by: 27
Author(s): Jason Radford, Kenneth Joseph
Software Mentions: 3
Published: over 4 years ago
10.1007/s00787-017-0972-4
Risk factors for comorbid oppositional defiant disorder in attention-deficit/hyperactivity disorder
Cited by: 26
Author(s): Siri D. S. Noordermeer, Marjolein Luman, Wouter D. Weeda, Jan K. Buitelaar, Jennifer S. Richards, Catharina A. Hartman, Pieter J. Hoekstra, Barbara Franke, Dirk J. Heslenfeld, Jaap Oosterlaan
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2019.01039
Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate
Cited by: 3
Author(s): Dipen Sangurdekar, Chao Sun, Helen McLaughlin, Katherine Ayling-Rouse, Norm Allaire, M. A. Penny, Paola G. Bronson
Software Mentions: 3
Published: about 5 years ago
10.12688/f1000research.16216.2
Feature selection with the R package MXM
Cited by: 9
Author(s): Michail Tsagris, Ioannis Tsamardinos
Software Mentions: 3
Published: about 5 years ago
10.1093/jxb/eraa302
Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species
Cited by: 24
Author(s): Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, Catherine Deborde, Laëtitia Fouillen, Pierre Van Delft, Daniel Jacob, Björn Usadel, Zhanwu Dai, Michel Génard, Gilles Vercambre, Sophie Colombié, Annick Moing, Yves Gibon
Software Mentions: 3
Published: over 4 years ago
10.1007/s00259-020-05075-4
Decoding COVID-19 pneumonia: comparison of deep learning and radiomics CT image signatures
Cited by: 61
Author(s): Hongmei Wang, Lu Wang, Edward H. Lee, Jimmy Zheng, Wei Zhang, Safwan Halabi, Chunlei Liu, Kan Deng, Jiangdian Song, Kristen W. Yeom
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-019-53428-3
Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: about 5 years ago
10.3389/fcell.2021.703969
A Risk Score Model Incorporating Three m6A RNA Methylation Regulators and a Related Network of miRNAs-m6A Regulators-m6A Target Genes to Predict the Prognosis of Patients With Ovarian Cancer
Cited by: 12
Author(s): Qian Li, Chen Ren, Yan‐Nan Chen, Yang Li, Feng Zhang, Bao-Jin Wang, Yuanhang Zhu, Feiyan Li, Jun J. Yang, Zhen-An Zhang
Software Mentions: 3
Published: about 3 years ago
10.1017/S0950268815000710
Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya
Cited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago
10.3389/fgene.2020.00456
Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer
Cited by: 8
Author(s): Peigen Chen, Junxian He, Huixia Ye, Senwei Jiang, Yunhui Li, Xiaomao Li, Jing Wan
Software Mentions: 3
Published: over 4 years ago
10.1038/srep17282
Protein profiling reveals consequences of lifestyle choices on predicted biological aging
Cited by: 35
Author(s): Stefan Enroth, Sofia Bosdotter Enroth, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41598-018-38441-2
Elastic net-based prediction of IFN-β treatment response of patients with multiple sclerosis using time series microarray gene expression profiles
Cited by: 11
Author(s): Arika Fukushima, Masahiro Sugimoto, Satoru Hiwa, Tomoyuki Hiroyasu
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-020-68383-7
A nomogram model for screening the risk of diabetes in a large-scale Chinese population: an observational study from 345,718 participants
Cited by: 9
Author(s): Mingyue Xue, Yinxia Su, Zuyong Feng, Shuxia Wang, Mingchen Zhang, Kai Wang, Hua Yao
Software Mentions: 3
Published: over 4 years ago
10.1038/srep31619
Multitask learning improves prediction of cancer drug sensitivity
Cited by: 77
Author(s): Han Yuan, Ivan Paskov, Hristo S. Paskov, Álvaro González, Christina Leslie
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-020-65040-x
Machine-learning based exploration of determinants of gray matter volume in the KORA-MRI study
Cited by: 3
Author(s): Franziska Galiè, Susanne Rospleszcz, Daniel Keeser, Ebba Beller, Ben Illigens, Roberto Lorbeer, Sergio Grosu, Sonja Selder, Sigrid Auweter, Christopher L. Schlett, Wolfgang Rathmann, Lars Schwettmann, Karl‐Heinz Ladwig, Jakob Linseisen, Annette Peters, Fabian Bamberg, Birgit Ertl‐Wagner, Sophia Stoecklein
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-83167-3
Radiomics signature on CECT as a predictive factor for invasiveness of lung adenocarcinoma manifesting as subcentimeter ground glass nodules
Cited by: 9
Author(s): Wufei Chen, Ming Li, Dingbiao Mao, Xianping Ge, Jiaofeng Wang, Min Tan, Wenrui Ma, Xuemei Huang, Jingyu Lu, Cheng Li, Yanqing Hua, Hao Wu
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2021.613890
Novel Hypoxia-Related Gene Signature for Risk Stratification and Prognosis in Hepatocellular Carcinoma
Cited by: 7
Author(s): Quanxiao Li, Limin Jin, Minghao Jin
Software Mentions: 3
Published: over 3 years ago
10.1186/s13072-017-0133-5
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Cited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-020-61589-9
Analysis of SNP Array Abnormalities in Patients with DE NOVO Acute Myeloid Leukemia with Normal Karyotype
Cited by: 7
Author(s): Mariam Ibáñez, Esperanza Such, Esther Onecha, Inés Gómez-Seguí, Alessandro Liquori, Jorge Sellés, David Hervás‐Marín, Eva Barragán, Rosa Ayala, Marta Llop, Maria López-Pavía, Inmaculada Rapado, Alexander Neef, Alejandra Sanjuán-Pla, Claudia Sargas, Elisa González-Romero, Mireia Boluda-Navarro, Rafa Andreu, Leonor Senent, Pau Montesinos, Joaquín Martínez‐López, Miguel Á. Sanz, Guillermo Sanz, José Cervera
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2020.585259
Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: about 4 years ago
10.3390/nu12092839
Learning the Language of Social Media: A Comparison of Engagement Metrics and Social Media Strategies Used by Food and Nutrition-Related Social Media Accounts
Cited by: 26
Author(s): Amy Barklamb, Annika Molenaar, Linda Brennan, Stephanie Evans, Jamie Choong, E. Wayne Herron, Mike Reid, Tracy A. McCaffrey
Software Mentions: 3
Published: about 4 years ago
10.1186/s40478-019-0795-2
Multiplex proteomics identifies novel CSF and plasma biomarkers of early Alzheimer’s disease
Cited by: 127
Author(s): Christopher D. Whelan, Niklas Mattsson, Michael W. Nagle, Swetha Vijayaraghavan, Craig Hyde, Randall J. Bateman, Erik Stomrud, Julie Lee, Lori Fitz, Tarek A. Samad, Gayathri Ramaswamy, Richard Margolin, Anders Mälarstig, Oskar Hansson
Software Mentions: 3
Published: about 5 years ago
10.18632/aging.102544
Prognostic implications of autophagy-associated gene signatures in non-small cell lung cancer
Cited by: 106
Author(s): Yang Liu, Ligao Wu, Haijiao Ao, Meng Zhao, Xue Leng, Mingdong Liu, Jianqun Ma, Jinhong Zhu
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.102049
Placental epigenetic clocks: estimating gestational age using placental DNA methylation levels
Cited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: over 5 years ago
10.18632/aging.101187
Methylome-wide association study of whole blood DNA in the Norfolk Island isolate identifies robust loci associated with age
Cited by: 26
Author(s): Miles C. Benton, Heidi G. Sutherland, Donia Macartney-Coxson, Larisa M. Haupt, Rodney Arthur Lea, Lyn R. Griffiths
Software Mentions: 3
Published: over 7 years ago
10.18632/aging.202636
Identification and validation of a two-gene metabolic signature for survival prediction in patients with kidney renal clear cell carcinoma
Cited by: 6
Author(s): Xudong Guo, Zhuolun Sun, Shaobo Jiang, Xunbo Jin, Hanbo Wang
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.202327
Identification of a novel immune microenvironment signature predicting survival and therapeutic options for bladder cancer
Cited by: 9
Author(s): Yi‐Lin Yan, Zhengnan Huang, Jinming Cai, Pengyu Tang, Fang Zhang, Mingyue Tan, Bing Shen
Software Mentions: 3
Published: almost 4 years ago
10.18632/aging.202838
The effectiveness of continuous renal replacement therapy in critical COVID-19 patients with cytokine release syndrome: a retrospective, multicenter, descriptive study from Wuhan, China
Cited by: 5
Author(s): Huiling Xiang, Bin Song, Yuanyuan Zhang, Jianduan Zhang, Jing Xiong
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.102931
Using ESTIMATE algorithm to establish an 8-mRNA signature prognosis prediction system and identify immunocyte infiltration-related genes in Pancreatic adenocarcinoma
Cited by: 51
Author(s): Zhaoqing Meng, Dianyun Ren, Kun Zhang, Jingyuan Zhao, Xin Jin, Heshui Wu
Software Mentions: 3
Published: over 4 years ago
10.18632/aging.103363
Biomarkers of aging and lung function in the normative aging study
Cited by: 14
Author(s): Cuicui Wang, Allan C. Just, Jonathan Heiss, Brent A. Coull, Lifang Hou, Yinan Zheng, David Sparrow, Pantel Vokonas, Andrea A. Baccarelli, Joel Schwartz
Software Mentions: 3
Published: over 4 years ago
10.18632/aging.101590
A multi-tissue full lifespan epigenetic clock for mice
Cited by: 144
Author(s): Michael J. Thompson, Karolina Chwiałkowska, Liudmilla Rubbi, Aldons J. Lusis, Richard C. Davis, Anuj Srivastava, Ron Korstanje, Gary A. Churchill, Steve Horvath, Matteo Pellegrini
Software Mentions: 3
Published: about 6 years ago
10.18632/aging.202922
A novel gene signature for prognosis prediction and chemotherapy response in patients with pancreatic cancer
Cited by: 4
Author(s): Hongcao Lin, Chonghui Hu, Shusen Zheng, Xiang Zhang, Rufu Chen, Quanbo Zhou
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.103491
Genome-wide analyses of the prognosis-related mRNA alternative splicing landscape and novel splicing factors based on large-scale low grade glioma cohort
Cited by: 8
Author(s): Wangrui Liu, Chuanyu Li, Wenhao Xu, Xiaojuan Liu, Hai-Dan Tang, Haiyang Huang
Software Mentions: 3
Published: over 4 years ago
10.1186/s13195-021-00814-7
An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s disease
Cited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 3 years ago
10.1186/s13195-020-00657-8
Association of glial and neuronal degeneration markers with Alzheimer’s disease cerebrospinal fluid profile and cognitive functions
Cited by: 17
Author(s): Unnur D. Teitsdottir, Marıá K. Jónsdóttir, Sigrún H. Lund, Taher Darreh‐Shori, Jón Snædal, Petur H. Petersen
Software Mentions: 3
Published: over 4 years ago
10.1186/s13075-018-1580-5
Factors associated with physicians’ prescriptions for rheumatoid arthritis drugs not filled by patients
Cited by: 8
Author(s): Hong Kan, Kirill Dyagilev, Peter Schulam, Suchi Saria, Hadi Kharrazi, David P. Bodycombe, Charles Molta, Jeffrey R. Curtis
Software Mentions: 3
Published: over 6 years ago
10.1186/s12859-019-2743-3
AUTALASSO: an automatic adaptive LASSO for genome-wide prediction
Cited by: 17
Author(s): Patrik Waldmann, Maja Ferenčaković, Gábor Mészáros, Negar Khayatzadeh, Ino Čurik, Johann Sölkner
Software Mentions: 3
Published: over 5 years ago