cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.670405

Construction of a Nine-MicroRNA-Based Signature to Predict the Overall Survival of Esophageal Cancer Patients
Cited by: 2
Author(s): Xiaobin Zhang, Yi He, Haiyong Gu, Zhichao Liu, Bin Li, Yang Yang, Jie Hao, Hua Ren
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.00493

Genome-Wide Analysis of Lung Adenocarcinoma Identifies Novel Prognostic Factors and a Prognostic Score
Cited by: 10
Author(s): Donglai Chen, Yueqiang Song, Fuquan Zhang, Xiaofan Wang, Erjia Zhu, Xi Zhang, Gening Jiang, Siguang Li, Chang Chen, Yongbing Chen
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2021.736423

Comprehensive Analysis of Splicing Factor and Alternative Splicing Event to Construct Subtype-Specific Prognosis-Predicting Models for Breast Cancer
Cited by: 4
Author(s): He Zhang, Baoai Han, Xingxing Han, Yuying Zhu, Hui Liu, Zhiyong Wang, Yanfen Cui, Ran Tian, Zicong Gao, Ruinan Tian, Sixin Ren, Xiaoyan Zuo, Jianfei Tian, Fei Zhang, Ruifang Niu
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.01119

Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2020.612840

Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
Cited by: 3
Author(s): Phillipe Loher, Nestoras Karathanasis
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00989

Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.652601

Construction and Comprehensive Prognostic Analysis of a lncRNA–miRNA–mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer
Cited by: 8
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Chuan Qin, Han Zhang, Ziwei Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2020.01684

The Psychological Impact of the COVID-19 Outbreak on Health Professionals: A Cross-Sectional Study
Cited by: 315
Author(s): Emanuele Maria Giusti, Elisa Pedroli, Guido Edoardo D’Aniello, Chiara Stramba Badiale, Giada Pietrabissa, Chiara Manna, Marco Stramba-Badiale, Giuseppe Riva, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 4
Published: about 6 years ago

10.3389/fpsyg.2018.00317

TIMSS 2011 Student and Teacher Predictors for Mathematics Achievement Explored and Identified via Elastic Net
Cited by: 16
Author(s): Jin Eun Yoo
Software Mentions: 4
Published: over 8 years ago

10.1534/g3.116.033332

Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (<i>Manihot esculenta</i>): Implications for the Prediction of Total Genetic Value and the Selection of Varieties
Cited by: 31
Author(s): Marnin D. Wolfe, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 4
Published: almost 10 years ago

10.1534/g3.120.401132

Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny
Cited by: 8
Author(s): Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.120.401733

Maximum <i>a posteriori</i> Threshold Genomic Prediction Model for Ordinal Traits
Cited by: 3
Author(s): Abelardo Montesinos‐López, Humberto Gutiérrez Pulido, Osval A. Montesinos-L֯ópez, J. Crossa
Software Mentions: 4
Published: almost 6 years ago

10.1002/gepi.22374

Multi‐tissue transcriptome‐wide association studies
Cited by: 8
Author(s): Nastasiya F. Grinberg, Chris Wallace
Software Mentions: 4
Published: almost 6 years ago

10.1590/1678-4685-GMB-2018-0269

Large miRNA survival analysis reveals a prognostic four-biomarker signature for triple negative breast cancer
Cited by: 15
Author(s): Fernando Andrade, Akinori Nakata, Noriko Gotoh, André Fujita
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-017-1203-5

Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 9 years ago

10.1186/s13059-020-02006-2

Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Cited by: 29
Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/giaa044

Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity
Cited by: 9
Author(s): Benjamin B. Chu, Kevin L. Keys, Christopher A. German, Hua Zhou, Jin Zhou, Eric M. Sobel, Janet S. Sinsheimer, Kenneth Lange
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/giaa110

Interpreting k-mer–based signatures for antibiotic resistance prediction
Cited by: 12
Author(s): Magali Jaillard, Mattia Palmieri, Alex van Belkum, Pierre Mahé
Software Mentions: 4
Published: about 6 years ago

10.1093/gigascience/giab002

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data
Cited by: 26
Author(s): Brian B. Nadel, David Lopez, Dennis Montoya, Feiyang Ma, Hannah Waddel, Misha M Khan, Serghei Mangul, Matteo Pellegrini
Software Mentions: 4
Published: over 5 years ago

10.1136/gutjnl-2016-313681

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
Cited by: 74
Author(s): E M de Vries, Junfeng Wang, Kate D. Williamson, Mariska Leeflang, Kirsten Boonstra, Rinse K. Weersma, Ulrich Beuers, Roger W. Chapman, Ronald B. Geskus, Cyriel Y. Ponsioen
Software Mentions: 4
Published: about 9 years ago

10.1038/s41437-021-00412-1

A guide for kernel generalized regression methods for genomic-enabled prediction
Cited by: 12
Author(s): Abelardo Montesinos‐López, Osval A. Montesinos-L֯ópez, J. Cricelio Montesinos-López, Carlos Flores-Cortés, Roberto De Rosa, J. Crossa
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2018.6937

Machine Learning–Based Prediction of Clinical Outcomes for Children During Emergency Department Triage
Cited by: 150
Author(s): Tadahiro Goto, Carlos A. Camargo, Mohammad Kamal Faridi, Robert J. Freishtat, Kohei Hasegawa
Software Mentions: 4
Published: over 7 years ago

10.1001/jamanetworkopen.2021.0591

A Pilot Study Using Frequent Inpatient Assessments of Suicidal Thinking to Predict Short-Term Postdischarge Suicidal Behavior
Cited by: 36
Author(s): Shirley B. Wang, Daniel D L Coppersmith, Evan M. Kleiman, Kate H. Bentley, Alexander J. Millner, Rebecca Fortgang, Patrick Mair, Walter Dempsey, Jeff C. Huffman, Matthew K. Nock
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: almost 6 years ago

10.7150/jca.57260

Construction of a ceRNA Network and a Prognostic lncRNA Signature associated with Vascular Invasion in Hepatocellular Carcinoma based on Weighted Gene Co-Expression Network Analysis
Cited by: 10
Author(s): Haisu Tao, Li Jiang, Junjie Liu, Tong Yuan, Erlei Zhang, Huifang Liang, Zhiyong Huang
Software Mentions: 4
Published: almost 6 years ago

10.7150/jca.54475

Development and Validation of a Nomogram based on cell growth-related Biomarkers for Oral Squamous Cell Carcinoma
Cited by: 1
Author(s): Yanjie Shuai, Yuansheng Duan, Mengqian Zhou, Kai Yue, Dandan Liu, Yan Fang, Yuxuan Wang, Yi‐Long Wu, Ze Zhang, Xudong Wang
Software Mentions: 4
Published: almost 6 years ago

10.1111/jcmm.13941

Deciphering molecular properties of hypermutated gastrointestinal cancer
Cited by: 8
Author(s): Wangxiong Hu, Yanmei Yang, Weiting Ge, Shu Zheng
Software Mentions: 4
Published: almost 8 years ago

10.1111/jcmm.14779

Four transcription profile–based models identify novel prognostic signatures in oesophageal cancer
Cited by: 9
Author(s): Tongyan Liu, Panqi Fang, Chencheng Han, Zhongliang Ma, Weizhang Xu, Wenjia Xia, Jingwen Hu, Yongming Xu, Lin Xu, Rong Yin, Siwei Wang, Qin Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1111/jcmm.14748

Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
Cited by: 6
Author(s): Yuanlei Chen, Shangjun Jiang, Zeyi Lu, Dingwei Xue, Liqun Xia, Jinmei Lu, Huan Wang, Liwei Xu, Liyang Li, Gonghui Li
Software Mentions: 4
Published: almost 7 years ago

10.1111/jcmm.16696

Establishment and experimental validation of an immune miRNA signature for assessing prognosis and immune landscape of patients with colorectal cancer
Cited by: 28
Author(s): Zaoqu Liu, Taoyuan Lu, Yanli Wang, Dechao Jiao, Zhaonan Li, Libo Wang, Long Liu, Chunguang Guo, Yanan Zhao, Xinwei Han
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-88845-w

Multitask fMRI and machine learning approach improve prediction of differential brain activity pattern in patients with insomnia disorder
Cited by: 7
Author(s): Mi Hyun Lee, Nambeom Kim, Jaeeun Yoo, Hang-Keun Kim, Young-Don Son, Young-Bo Kim, Seong Min Oh, Soohyun Kim, Hayoung Lee, Jeong Eun Jeon, Yu Jin Lee
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-98008-6

Modelling COVID-19 severity in the Republic of Ireland using patient co-morbidities, socioeconomic profile and geographic location, February to November 2020
Cited by: 6
Author(s): Martin Boudou, Coilín ÓhAiseadha, Patricia Garvey, Jean O’Dwyer, Paul Hynds
Software Mentions: 4
Published: about 5 years ago

10.7150/thno.35573

Genome-wide discovery and validation of diagnostic DNA methylation-based biomarkers for hepatocellular cancer detection in circulating cell free DNA
Cited by: 54
Author(s): Ryan A. Hlady, Zhao Xiao, Xiaoyu Pan, Ju Dong Yang, Fowsiyo Ahmed, Samuel O. Antwi, Nasra H. Giama, Tushar Patel, Lewis R. Roberts, Chen Liu, Keith D. Robertson
Software Mentions: 4
Published: almost 8 years ago

10.1084/jem.20201189

αβγδ T cells play a vital role in fetal human skin development and immunity
Cited by: 17
Author(s): René Reitermaier, Thomas Krausgruber, Nikolaus Fortelny, Tanya Ayub, Pablo A. Vieyra‐Garcia, Philip Kienzl, Peter Wolf, Anke Scharrer, Christian Fiala, Marita Kölz, Manuela Hiess, Martin Vierhapper, Christopher Schuster, Andreas Spittler, Christof Worda, Wolfgang Weninger, Christoph Bock, Wolfgang Eppel, Adelheid Elbe‐Bürger
Software Mentions: 4
Published: over 5 years ago

10.7150/ijms.49576

Prognosis Prediction for Colorectal Cancer Patients: A Risk Score Based on The Metabolic-Related Genes
Cited by: 1
Author(s): Yongqu Lu, Xin Zhou, Zhenzhen Liu, Wendong Wang, Siyi Lu, Wei Fu
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.ijrobp.2016.08.013

Functional Data Analysis Applied to Modeling of Severe Acute Mucositis and Dysphagia Resulting From Head and Neck Radiation Therapy
Cited by: 14
Author(s): Jamie Dean, Kee H. Wong, Liam Welsh, Ann-Britt Jones, Ulrike Schick, Jung Hun Oh, Aditya Apte, Kate Newbold, Shreerang A. Bhide, Kevin Harrington, Joseph O. Deasy, Christopher M. Nutting, S. Gulliford
Software Mentions: 4
Published: almost 10 years ago

10.29252/.22.6.374

Application of Sparse Linear Discriminant Analysis and Elastic Net for Diagnosis of IgA Nephropathy: Statistical and Biological Viewpoints
Cited by: 6
Author(s): Tahereh Mohammadi Majd, Shiva Kalantari, Hadi Raeisi Shahraki, Mohsen Nafar, Afshin Almasi, Shiva Samavat, Mahmoud Parvin, Amir Hossein Hashemian
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph17145217

Association of Genetic and Environmental Factors with Non-Alcoholic Fatty Liver Disease in a Chinese Han Population
Cited by: 5
Author(s): Zheng Li, Cheng-Yin Ye, Li Wang, Jinmei Li, Lei Yang
Software Mentions: 4
Published: about 6 years ago

10.3390/ijerph17197271

Factors Associated with E-Cigarette Use in U.S. Young Adult Never Smokers of Conventional Cigarettes: A Machine Learning Approach
Cited by: 9
Author(s): Nkiruka C. Atuegwu, Cheryl Oncken, Reinhard Laubenbacher, Mario F. Perez, Eric M. Mortensen
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/5554342

Development and Validation of a Robust Immune-Related Prognostic Signature for Gastric Cancer
Cited by: 7
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.63852

Psychosocial experiences modulate asthma-associated genes through gene-environment interactions
Cited by: 10
Author(s): Justyna Resztak, Allison K. Farrell, Henriette Mair-Meijers, Adnan Alazizi, Xiaoquan Wen, Derek E. Wildman, Samuele Zilioli, Richard B. Slatcher, Roger Piqué-Regi, Francesca Luca
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.69808

Common host variation drives malaria parasite fitness in healthy human red cells
Cited by: 15
Author(s): Emily R. Ebel, Frans A. Kuypers, Carrie Lin, Dmitri A. Petrov, Elizabeth S. Egan
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.66128

High social status males experience accelerated epigenetic aging in wild baboons
Cited by: 48
Author(s): Jordan A Anderson, Rachel A Johnston, Amanda J. Lea, Fernando A. Campos, Tawni Voyles, Mercy Akinyi, Susan C. Alberts, Elizabeth A. Archie, Jenny Tung
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.31437

The formation of the light-sensing compartment of cone photoreceptors coincides with a transcriptional switch
Cited by: 29
Author(s): Janine M Daum, Özkan Keles, Sjoerd J.B. Holwerda, Hubertus Kohler, Filippo M. Rijli, Michael Stadler, Botond Roska
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms22010135

Circulating tRNA Fragments as a Novel Biomarker Class to Distinguish Acute Stroke Subtypes
Cited by: 13
Author(s): Thủy Nguyễn, M. Leontien van der Bent, Marieke J.H. Wermer, Ido R. van den Wijngaard, Erik W. van Zwet, Bas de Groot, Paul H.A. Quax, Nyika D. Kruyt, A. Yaël Nossent
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms22041632

Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
Cited by: 8
Author(s): Eskezeia Y. Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J. P. Tsai, Ya‐Sian Chang, Jan-Gowth Chang, Ka-Lok Ng
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms221910393

Relationships between Mitochondrial Function, AMPK, and TORC1 Signaling in Lymphoblasts with Premutation Alleles of the FMR1 Gene
Cited by: 2
Author(s): Paul R. Fisher, Claire Y. Allan, Oana Sanislav, Anna Atkinson, Kevin R.W. Ngoei, Bruce E. Kemp, Elsdon Storey, Danuta Z. Loesch, Sarah J. Annesley
Software Mentions: 4
Published: about 5 years ago

10.2196/jmir.6240

Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis
Cited by: 33
Author(s): Vibhu Agarwal, L. Zhang, Josh Zhu, Shiyuan Fang, Tim Cheng, Chloe Hong, Nigam H. Shah
Software Mentions: 4
Published: about 10 years ago

10.1155/2020/6657013

Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
Cited by: 2
Author(s): Guangzhen Wu, Yingkun Xu, Chenglin Han, Zilong Wang, Jiayi Li, Qifei Wang, Xiangyu Che
Software Mentions: 4
Published: almost 6 years ago

10.1155/2020/8291036

A Novel Signature Based on mTORC1 Pathway in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zhuomao Mo, Shuqiao Zhang, Shijun Zhang
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/5550116

An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.14303

Pan-organ transcriptome variation across 21 cancer types
Cited by: 6
Author(s): Wangxiong Hu, Yanmei Yang, Xiaofen Li, Shu Zheng
Software Mentions: 4
Published: almost 10 years ago

10.3389/fdata.2020.00018

Theory In, Theory Out: The Uses of Social Theory in Machine Learning for Social Science
Cited by: 27
Author(s): Jason Radford, Kenneth Joseph
Software Mentions: 3
Published: over 6 years ago

10.1194/jlr.M057562

Plasma diacylglycerol composition is a biomarker of metabolic syndrome onset in rhesus monkeys
Cited by: 18
Author(s): Michael A. Polewski, Maggie S. Burhans, Minghui Zhao, Ricki J. Colman, Dhanansayan Shanmuganayagam, Mary J. Lindstrom, James M. Ntambi, Rozalyn M. Anderson
Software Mentions: 3
Published: about 11 years ago

10.1093/gigascience/giaa076

Imputing missing RNA-sequencing data from DNA methylation by using a transfer learning–based neural network
Cited by: 30
Author(s): Xiang Zhou, Hua Chai, Huiying Zhao, Ching Hsing Luo, Yuedong Yang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13046-021-02016-3

Identification and monitoring of mutations in circulating cell-free tumor DNA in hepatocellular carcinoma treated with lenvatinib
Cited by: 22
Author(s): Yoshiko Fujii, Atsushi Ono, C. Nelson Hayes, Hiroshi Aikata, Masami Yamauchi, Shinsuke Uchikawa, Kenichiro Kodama, Yuji Teraoka, Hatsue Fujino, Takashi Nakahara, Eisuke Murakami, Daiki Miki, Wataru Okamoto, Tomokazu Kawaoka, Masataka Tsuge, Michio Imamura, Kazuaki Chayama
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.585259

Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.48114

Pretectal neurons control hunting behaviour
Cited by: 39
Author(s): Paride Antinucci, Mónica Folgueira, Isaac H. Bianco
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.14850

Therapy-induced developmental reprogramming of prostate cancer cells and acquired therapy resistance
Cited by: 49
Author(s): Mannan Nouri, Josselin Caradec, Amy A. Lubik, Na Li, Brett G. Hollier, Mandeep Takhar, Manuel Altimirano-Dimas, Mengqian Chen, Mani Roshan-Moniri, Miriam Butler, Melanie Lehman, Jennifer Bishop, Sarah Truong, Shih Chieh Huang, Dawn R. Cochrane, Michael Cox, Colin C. Collins, Martin Gleave, Nicholas Erho, Mohamed Alshalafa, Elai Davicioni, Colleen C. Nelson, Sheryl Gregory-Evans, R. Jeffrey Karnes, Robert B. Jenkins, Eric A. Klein, Ralph Buttyan
Software Mentions: 3
Published: over 9 years ago

10.1155/2020/5310793

Identification of a 5-Gene Metabolic Signature for Predicting Prognosis Based on an Integrated Analysis of Tumor Microenvironment in Lung Adenocarcinoma
Cited by: 14
Author(s): Xiaolin Yu, Xiaomei Zhang, Yanxia Zhang
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.60220

Identifying molecular features that are associated with biological function of intrinsically disordered protein regions
Cited by: 37
Author(s): Taraneh Zarin, Bob Strome, Gang Peng, Iva Pritišanac, Julie D. Forman‐Kay, Alan M. Moses
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.45056

Global donor and acceptor splicing site kinetics in human cells
Cited by: 47
Author(s): Leonhard Wachutka, Livia Caizzi, Julien Gagneur, Patrick Cramer
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.58954

Genetic and environmental determinants of variation in the plasma lipidome of older Australian twins
Cited by: 8
Author(s): Matthew Wai Kin Wong, Anbupalam Thalamuthu, Nady Braidy, Karen A. Mather, Yue Liu, Liliana G Ciobanu, Bernhardt T. Baune, Nicola J. Armstrong, John B. Kwok, Peter R. Schofield, Margaret J. Wright, David Ames, Russell Pickford, Teresa Lee, Anne Poljak, Perminder S. Sachdev
Software Mentions: 3
Published: about 6 years ago

10.1186/gb-2013-14-10-r115

DNA methylation age of human tissues and cell types
Cited by: 4,174
Author(s): Steve Horvath
Software Mentions: 3
Published: almost 14 years ago

10.1186/gm433

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
Cited by: 96
Author(s): Gerald Quon, Syed Haider, Amit G. Deshwar, Ang Cui, Paul C. Boutros, Quaid Morris
Software Mentions: 3
Published: almost 14 years ago

10.3389/fgene.2019.01039

Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate
Cited by: 3
Author(s): Dipen Sangurdekar, Chao Sun, Helen McLaughlin, Katherine Ayling-Rouse, Norm Allaire, M. A. Penny, Paola G. Bronson
Software Mentions: 3
Published: almost 7 years ago

10.2196/22835

Depression, Anxiety, and Lifestyle Among Essential Workers: A Web Survey From Brazil and Spain During the COVID-19 Pandemic
Cited by: 50
Author(s): Raquel Brandini De Boni, Vicent Balanzá‐Martínez, Jurema Corrêa da Mota, Taiane de Azevedo Cardoso, Pedro Ballester, Beatriz Atienza-Carbonell, Francisco I. Bastos, Flávio Kapczinski
Software Mentions: 3
Published: almost 6 years ago

10.7150/ijms.46780

The prognostic value and potential mechanism of Matrix Metalloproteinases among Prostate Cancer
Cited by: 13
Author(s): Xinyu Geng, Chunyang Chen, Yuhua Huang, Jianquan Hou
Software Mentions: 3
Published: almost 7 years ago

10.12688/f1000research.16216.2

Feature selection with the R package MXM
Cited by: 9
Author(s): Michail Tsagris, Ioannis Tsamardinos
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.613890

Novel Hypoxia-Related Gene Signature for Risk Stratification and Prognosis in Hepatocellular Carcinoma
Cited by: 7
Author(s): Quanxiao Li, Limin Jin, Minghao Jin
Software Mentions: 3
Published: over 5 years ago

10.1002/gepi.22345

A framework for pathway knowledge driven prioritization in genome‐wide association studies
Cited by: 2
Author(s): Shrayashi Biswas, Suresh Pal, Partha P. Majumder, Samsiddhi Bhattacharjee
Software Mentions: 3
Published: about 6 years ago

10.3390/genes12010125

Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis
Cited by: 8
Author(s): Jing Xu, Yicheng Yang, Yuejin Yang, Changming Xiong
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21072517

A Machine Learning-Based Identification of Genes Affecting the Pharmacokinetics of Tacrolimus Using the DMETTM Plus Platform
Cited by: 10
Author(s): Jeong‐An Gim, Yonghan Kwon, Hyun A. Lee, Kyeong‐Ryoon Lee, Soohyun Kim, Yuni Choi, Yu Kyong Kim, Howard Lee
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evy146

Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism
Cited by: 15
Author(s): Igor B. Rogozin, E. Michael Gertz, Pavel V. Baranov, Eugenia Poliakov, Alejandro A. Schäffer
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms21113814

Urinary MicroRNAs as Potential Markers for Non-Invasive Diagnosis of Bladder Cancer
Cited by: 13
Author(s): Kati Erdmann, Karsten Salomo, Anna Klimová, Ulrike Heberling, Andrea Lohse-Fischer, Romy Fuehrer, Christian Thomas, Ingo Roeder, Michael Froehner, Manfred P. Wirth, Susanne Fuessel
Software Mentions: 3
Published: over 6 years ago

10.1007/s00259-020-05075-4

Decoding COVID-19 pneumonia: comparison of deep learning and radiomics CT image signatures
Cited by: 61
Author(s): Hongmei Wang, Lu Wang, Edward H. Lee, Jimmy Zheng, Wei Zhang, Safwan Halabi, Chunlei Liu, Kan Deng, Jiangdian Song, Kristen W. Yeom
Software Mentions: 3
Published: almost 6 years ago

10.7150/thno.47882

Plasma protein-based signature predicts distant metastasis and induction chemotherapy benefit in Nasopharyngeal Carcinoma
Cited by: 13
Author(s): Ye‐Lin Liang, Junyan Li, Qian Li, Ling‐Long Tang, Lei Chen, Yan‐Ping Mao, Qing‐Mei He, Xiaojing Yang, Yuan Liu, Xiaohong Hong, Yin Zhao, Shiwei He, Ying Guo, Yaqin Wang, Panpan Zhang, Na Liu, Ying‐Qin Li, Jingfei Ma
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00405-019-05687-z

Prediction of aspiration in dysphagia using logistic regression: oral intake and self-evaluation
Cited by: 9
Author(s): Bas J. Heijnen, Stefan Böhringer, Renée Speyer
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13059-018-1514-1

Epigenetic prediction of complex traits and death
Cited by: 133
Author(s): Daniel L. McCartney, Robert F. Hillary, Anna J. Stevenson, Stuart J. Ritchie, Richard M Martin, Qian Zhang, Stewart W. Morris, Mairead Lesley Bermingham, Archie Campbell, Alison Murray, Heather C. Whalley, Catharine R. Galé, David J. Porteous, Chris Haley, Allan F. McRae, Naomi R. Wray, Peter M. Visscher, Andrew M. McIntosh, Kathryn Evans, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 3
Published: about 8 years ago

10.3389/fchem.2020.00738

Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation
Cited by: 3
Author(s): Giulia Biosa, Diana Giurghita, Eugenio Alladio, Marco Vincenti, Tereza Neocleous
Software Mentions: 3
Published: almost 6 years ago

10.1007/s00787-017-0972-4

Risk factors for comorbid oppositional defiant disorder in attention-deficit/hyperactivity disorder
Cited by: 26
Author(s): Siri D. S. Noordermeer, Marjolein Luman, Wouter D. Weeda, Jan K. Buitelaar, Jennifer S. Richards, Catharina A. Hartman, Pieter J. Hoekstra, Barbara Franke, Dirk J. Heslenfeld, Jaap Oosterlaan
Software Mentions: 3
Published: over 9 years ago

10.3390/genes11101181

In Silico Model for Chemical-Induced Chromosomal Damages Elucidates Mode of Action and Irrelevant Positives
Cited by: 4
Author(s): Yuzo Fujita, Osamu Morita, Hiroshi Honda
Software Mentions: 3
Published: almost 6 years ago

10.2196/12214

Improved Real-Time Influenza Surveillance: Using Internet Search Data in Eight Latin American Countries
Cited by: 27
Author(s): Leonardo Clemente, Fred Lu, Mauricio Santillana
Software Mentions: 3
Published: over 7 years ago

10.7150/jca.57231

A clinical prediction model identifies a subgroup with inferior survival within intermediate risk acute myeloid leukemia
Cited by: 8
Author(s): Xiaoxia Hu, Bianhong Wang, Qi Chen, Aijie Huang, Weijia Fu, Lixia Liu, Ying Zhang, Gusheng Tang, Hui Cheng, Xiong Ni, Lei Gao, Jie Chen, Li Chen, Weiping Zhang, Jianmin Yang, Shanbo Cao, Li Yu, Jianmin Wang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: about 10 years ago

10.7150/jca.51079

Infiltrating Immune Cells in Gastric Cancer: A Novel Predicting Model for Prognosis
Cited by: 6
Author(s): Wenjie Li, Mengting Li, Haizhou Wang, Yanan Peng, Shouquan Dong, Yuanyuan Lu, Fan Wang, Fei Xu, Lan Liu, Qiu Zhao
Software Mentions: 3
Published: almost 6 years ago

10.7150/jca.52439

Novel biomarkers and prediction model for the pathological complete response to neoadjuvant treatment of triple-negative breast cancer
Cited by: 4
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13072-017-0133-5

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Cited by: 62
Author(s): Lenka Gahurová, Shin-ichi Tomizawa, Sébastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon Andrews, Taiping Chen, Gavin Kelsey
Software Mentions: 3
Published: over 9 years ago

10.1017/S0950268815000710

Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya
Cited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 11 years ago

10.1038/s41398-021-01606-1

Who benefits most from expectancy effects? A combined neuroimaging and antidepressant trial in depressed older adults
Cited by: 3
Author(s): Sigal Zilcha‐Mano, Meredith L. Wallace, Patrick J. Brown, Joel R. Sneed, Steven P. Roose, Bret R. Rutherford
Software Mentions: 3
Published: about 5 years ago

10.1111/jcmm.16323

Construction of a robust prognostic model for adult adrenocortical carcinoma: Results from bioinformatics and real‐world data
Cited by: 8
Author(s): Xi Tian, Wenhao Xu, Aihetaimujiang Anwaier, Hongkai Wang, Fangning Wan, Dalong Cao, Wenjie Luo, Guohai Shi, Yuanyuan Qu, Hai-Liang Zhang, Dingwei Ye
Software Mentions: 3
Published: over 5 years ago

10.1186/s13059-015-0610-8

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome
Cited by: 76
Author(s): Ohad Manor, Elhanan Borenstein
Software Mentions: 3
Published: over 11 years ago

10.3390/genes9020078

DNA Methylation and All-Cause Mortality in Middle-Aged and Elderly Danish Twins
Cited by: 26
Author(s): Anne Marie Svane, Mette Soerensen, Jesper Lund, Qihua Tan, Juulia Jylhävä, Yunzhang Wang, Nancy L. Pedersen, Sara Hägg, Birgit Debrabant, Ian J. Deary, Kaare Christensen, Lene Christiansen, Jacob Hjelmborg
Software Mentions: 3
Published: over 8 years ago

10.1128/mSphere.00104-20

HIV Is Associated with Modified Humoral Immune Responses in the Setting of HIV/TB Coinfection
Cited by: 13
Author(s): Esther van Woudenbergh, Edward B. Irvine, Leela Davies, Marwou de Kock, Willem A. Hanekom, Cheryl L. Day, Sarah M. Fortune, Galit Alter
Software Mentions: 3
Published: over 6 years ago

10.1007/s12561-016-9185-5

Classification of Large-Scale Remote Sensing Images for Automatic Identification of Health Hazards
Cited by: 5
Author(s): Mark A. Wolters, C. B. Dean
Software Mentions: 3
Published: almost 10 years ago

10.3389/fcell.2021.703969

A Risk Score Model Incorporating Three m6A RNA Methylation Regulators and a Related Network of miRNAs-m6A Regulators-m6A Target Genes to Predict the Prognosis of Patients With Ovarian Cancer
Cited by: 12
Author(s): Qian Li, Chen Ren, Yan‐Nan Chen, Yang Li, Feng Zhang, Bao-Jin Wang, Yuanhang Zhu, Feiyan Li, Jun J. Yang, Zhen-An Zhang
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2021.651406

A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma
Cited by: 28
Author(s): Zheng Yang, He Tian, Zheng Zhou, Xiao Chu, Hengchang Liu, Yu Liu, Li-Yu Wang, Tao Fan, Bo Zheng, Fengwei Tan, Qi Xue, Gengshu Gao, Chunxiang Li, Jie He
Software Mentions: 3
Published: over 5 years ago

10.1007/s11222-019-09914-9

High-dimensional regression in practice: an empirical study of finite-sample prediction, variable selection and ranking
Cited by: 21
Author(s): Fan Wang, Sach Mukherjee, Sylvia Richardson, Steven M. Hill
Software Mentions: 3
Published: almost 7 years ago

10.1007/s11695-016-2477-5

Upregulated TNF Expression 1 Year After Bariatric Surgery Reflects a Cachexia-Like State in Subcutaneous Adipose Tissue
Cited by: 12
Author(s): Alexander Jürets, Bianca Itariu, Magdalena Keindl, Gerhard Prager, Felix B. Langer, Viktor Grablowitz, Maximilian Zeyda, Thomas Stulnig
Software Mentions: 3
Published: almost 10 years ago

10.3389/fpsyg.2017.01726

Deep Convolutional Neural Networks Outperform Feature-Based But Not Categorical Models in Explaining Object Similarity Judgments
Cited by: 99
Author(s): Kamila M. Jozwik, Nikolaus Kriegeskorte, Katherine R. Storrs, Marieke Mur
Software Mentions: 3
Published: almost 9 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607