Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmnet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models
51 versions
Latest release: over 1 year ago
531 dependent packages
128,740 downloads last month

Papers Mentioning glmnet 1,607

10.1186/s12967-019-2109-7
Prognostic nomogram for bladder cancer with brain metastases: a National Cancer Database analysis
Cited by: 14
Author(s): Zhixian Yao, Zhong Zheng, Ke Wu, Ren‐Jie Wang, Xingyu Mu, Feng Sun, Xiang Wang, Shivank Garg, Wenyin Shi, Yongzhong He, Zhihong Liu
Software Mentions: 4
Published: almost 5 years ago
10.1186/s41927-019-0078-3
Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: over 5 years ago
10.1186/s13104-020-05371-0
FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: about 4 years ago
10.1186/s12885-020-07532-7
Establishment of an immune-related gene pair model to predict colon adenocarcinoma prognosis
Cited by: 8
Author(s): Jihang Luo, Puyu Liu, Leibo Wang, Yi Huang, Yuanyan Wang, Wenjing Geng, Duo Chen, Yifeng Bai, Zichen Yang
Software Mentions: 4
Published: about 4 years ago
10.3390/ijms22010135
Circulating tRNA Fragments as a Novel Biomarker Class to Distinguish Acute Stroke Subtypes
Cited by: 13
Author(s): Thủy Nguyễn, M. Leontien van der Bent, Marieke J.H. Wermer, Ido R. van den Wijngaard, Erik W. van Zwet, Bas de Groot, Paul H.A. Quax, Nyika D. Kruyt, A. Yaël Nossent
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40001-017-0270-0
Using automated texture features to determine the probability for masking of a tumor on mammography, but not ultrasound
Cited by: 5
Author(s): Lothar Häberle, Carolin C. Hack, Katharina Heusinger, Florian Wagner, Sebastian M. Jud, Michael Uder, Matthias W. Beckmann, Rüdiger Schulz‐Wendtland, Thomas Wittenberg, Peter A. Fasching
Software Mentions: 4
Published: about 7 years ago
10.1186/s12889-019-7861-3
Health as an independent predictor of the 2017 French presidential voting behaviour: a cross-sectional analysis
Cited by: 5
Author(s): Jean–David Zeitoun, Matthieu Faron, Sophie de Vaugrigneuse, Jérémie H. Lefèvre
Software Mentions: 4
Published: about 5 years ago
10.1186/s12889-020-09130-5
Model of genetic and environmental factors associated with type 2 diabetes mellitus in a Chinese Han population
Cited by: 7
Author(s): Zheng Li, Chengyin Ye, Tianyu Zhao, Lei Yang
Software Mentions: 4
Published: over 4 years ago
10.1007/s00259-020-04814-x
Individual brain metabolic connectome indicator based on Kullback-Leibler Divergence Similarity Estimation predicts progression from mild cognitive impairment to Alzheimer’s dementia
Cited by: 45
Author(s): Min Wang, Jiehui Jiang, Zhuangzhi Yan, Ian Alberts, Jingjie Ge, Huiwei Zhang, Chuantao Zuo, Jin‐Tai Yu, Axel Rominger, Kuangyu Shi, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2019.00493
Genome-Wide Analysis of Lung Adenocarcinoma Identifies Novel Prognostic Factors and a Prognostic Score
Cited by: 10
Author(s): Donglai Chen, Yueqiang Song, Fuquan Zhang, Xiaofan Wang, Erjia Zhu, Xi Zhang, Gening Jiang, Siguang Li, Chang Chen, Yongbing Chen
Software Mentions: 4
Published: over 5 years ago
10.1007/s00394-018-1767-1
Metabolite profiles evaluated, according to sex, do not predict resting energy expenditure and lean body mass in healthy non-obese subjects
Cited by: 8
Author(s): M. Armbruster, M Rist, Stephanie Seifert, Lara Frommherz, Christoph H. Weinert, Carina Mack, Alexander Röth, Benedikt Merz, Diana Bunzel, Ralf Krüger, Sabine E. Kulling, Bernhard Watzl, Achim Bub
Software Mentions: 4
Published: over 6 years ago
10.3389/fonc.2021.666199
Prognostic Implication of a Novel Metabolism-Related Gene Signature in Hepatocellular Carcinoma
Cited by: 15
Author(s): Chaoyan Yuan, Mengqin Yuan, Chen Ming-qian, Jinhua Ouyang, Wei Tan, Fangfang Dai, Dongyong Yang, Shiyi Liu, Y. Zheng, Chunqin Zhou, Yanxiang Cheng
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.736423
Comprehensive Analysis of Splicing Factor and Alternative Splicing Event to Construct Subtype-Specific Prognosis-Predicting Models for Breast Cancer
Cited by: 4
Author(s): He Zhang, Baoai Han, Xingxing Han, Yuying Zhu, Hui Liu, Zhiyong Wang, Yanfen Cui, Ran Tian, Zicong Gao, Ruinan Tian, Sixin Ren, Xiaoyan Zuo, Jianfei Tian, Fei Zhang, Ruifang Niu
Software Mentions: 4
Published: about 3 years ago
10.1007/s00330-018-5444-9
Association of subchondral bone texture on magnetic resonance imaging with radiographic knee osteoarthritis progression: data from the Osteoarthritis Initiative Bone Ancillary Study
Cited by: 29
Author(s): James Mackay, Geeta Kapoor, Jeffrey B. Driban, Grace H. Lo, Timothy E. McAlindon, Andoni P. Toms, Andrew W. McCaskie, Fiona J. Gilbert
Software Mentions: 4
Published: over 6 years ago
10.1007/s00330-020-07624-9
A PET/CT nomogram incorporating SUVmax and CT radiomics for preoperative nodal staging in non-small cell lung cancer
Cited by: 20
Author(s): Yunming Xie, Hongguang Zhao, Yan Guo, Fanyang Meng, Xiangchun Liu, Yiying Zhang, Xiaochen Huai, Qianting Wong, Yu Fu, Huimao Zhang
Software Mentions: 4
Published: almost 4 years ago
10.1186/1753-6561-8-S1-S94
Does the inclusion of rare variants improve risk prediction?
Cited by: 1
Author(s): Erin Austin, Wei Pan, Xiaotong Shen
Software Mentions: 4
Published: over 10 years ago
10.3390/ijms22041632
Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
Cited by: 8
Author(s): Eskezeia Y. Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J. P. Tsai, Ya‐Sian Chang, Jan-Gowth Chang, Ka-Lok Ng
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13059-020-02006-2
Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Cited by: 29
Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek
Software Mentions: 4
Published: over 4 years ago
10.1186/1753-6561-5-S9-S19
Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
Cited by: 8
Author(s): Asuman Türkmen, Shili Lin
Software Mentions: 4
Published: almost 13 years ago
10.3390/ijms221910393
Relationships between Mitochondrial Function, AMPK, and TORC1 Signaling in Lymphoblasts with Premutation Alleles of the FMR1 Gene
Cited by: 2
Author(s): Paul R. Fisher, Claire Y. Allan, Oana Sanislav, Anna Atkinson, Kevin R.W. Ngoei, Bruce E. Kemp, Elsdon Storey, Danuta Z. Loesch, Sarah J. Annesley
Software Mentions: 4
Published: about 3 years ago
10.3390/nu11051032
Plasma Metabolites Associated with Coffee Consumption: A Metabolomic Approach within the PREDIMED Study
Cited by: 15
Author(s): Christopher Papandreou, Pablo Hernández‐Alonso, Mònica Bulló, Miguel Ruiz‐Canela, Edward Yu, Marta Guasch‐Ferré, Estefanía Toledo, Courtney Dennis, Amy Deik, Clary B. Clish, Cristina Razquín, Dolores Corella, Ramón Estruch, Emilio Ros, Montserrat Fitó, Fernando Arós, Miquel Fiol, José Lapetra, Cristina Ruano, Liming Liang, Miguel Ángel Martínez‐González, Frank B. Hu, Jordi Salas‐Salvadó
Software Mentions: 4
Published: over 5 years ago
10.1186/s12874-016-0277-1
Clinical prediction in defined populations: a simulation study investigating when and how to aggregate existing models
Cited by: 21
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 4
Published: almost 8 years ago
10.2196/jmir.6240
Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis
Cited by: 33
Author(s): Vibhu Agarwal, L. Zhang, Josh Zhu, Shiyuan Fang, Tim Cheng, Chloe Hong, Nigam H. Shah
Software Mentions: 4
Published: about 8 years ago
10.3389/fonc.2020.00604
Radiomics-Based Preoperative Prediction of Lymph Node Status Following Neoadjuvant Therapy in Locally Advanced Rectal Cancer
Cited by: 31
Author(s): Xuezhi Zhou, Yan Yi, Zhenyu Liu, Zhiyang Zhou, Bingjia Lai, Kai Sun, Longfei Li, Luqi Huang, Yanqiu Feng, Wuteng Cao, Jie Tian
Software Mentions: 4
Published: over 4 years ago
10.1186/s12874-016-0254-8
Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application
Cited by: 119
Author(s): Monica M. Vasquez, Chengcheng Hu, Denise J. Roe, Zhao Chen, Marilyn Halonen, Stefano Guerra
Software Mentions: 4
Published: about 8 years ago
10.1186/s12880-021-00633-0
Radiomic analysis of Gd-EOB-DTPA-enhanced MRI predicts Ki-67 expression in hepatocellular carcinoma
Cited by: 19
Author(s): Yanfen Fan, Yanxia Yu, Ximing Wang, Mengjie Hu, Chunhong Hu
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2019.01119
Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: about 5 years ago
10.3389/fnagi.2021.609043
Ongoing Oscillatory Electrophysiological Alterations in Frail Older Adults: A MEG Study
Cited by: 4
Author(s): Isabel Suárez-Méndez, Stefan Walter, David López‐Sanz, Natalia Pasquín, R. López Bernabé, Ernesto Castillo Gallo, Myriam Valdés, Francisco del Pozo, Fernando Maestú, Leocadio Rodrı́guez-Mañas
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12880-019-0355-z
Computed tomography-based predictive nomogram for differentiating primary progressive pulmonary tuberculosis from community-acquired pneumonia in children
Cited by: 21
Author(s): Bei Wang, Min Li, He Ma, Fangfang Han, Yan Wang, Shunying Zhao, Zhimin Liu, Tao Yu, Jie Tian, Di Dong, Yun Peng
Software Mentions: 4
Published: over 5 years ago
10.1186/s12880-021-00564-w
CT-based radiomics combined with signs: a valuable tool to help radiologist discriminate COVID-19 and influenza pneumonia
Cited by: 14
Author(s): Yurong Huang, Zhenguang Zhang, Siyun Liu, Xiang Li, Yaewon Yang, Jiyao Ma, Zhipeng Li, Jialong Zhou, Yuanming Jiang, Bo He
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.103753
Eight immune-related genes predict survival outcomes and immune characteristics in breast cancer
Cited by: 2
Author(s): Xu Han, Gangjian Wang, Lili Zhu, Liu Hong, Bingjie Li
Software Mentions: 4
Published: over 4 years ago
10.3389/fdata.2021.672460
Comprehensive Data Integration Approach to Assess Immune Responses and Correlates of RTS,S/AS01-Mediated Protection From Malaria Infection in Controlled Human Malaria Infection Trials
Cited by: 5
Author(s): William Chad Young, Lindsay N. Carpp, Sidhartha Chaudhury, Jason A. Regules, Elke S. Bergmann‐Leitner, Christian F. Ockenhouse, Ulrike Wille-Reece, Allan C. deCamp, Ellis Hughes, Celia Mahoney, Suresh Pallikkuth, Savita Pahwa, S. Moses Dennison, Sarah V. Mudrak, S. Munir Alam, Kelly E. Seaton, Rachel L. Spreng, Jon Fallon, Ashlin Michell, Fernando Ulloa‐Montoya, Margherita Coccia, Erik Jongert, Galit Alter, Georgia D. Tomaras, Raphaël Gottardo
Software Mentions: 4
Published: over 3 years ago
10.1155/2020/6657013
Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
Cited by: 2
Author(s): Guangzhen Wu, Yingkun Xu, Chenglin Han, Zilong Wang, Jiayi Li, Qifei Wang, Xiangyu Che
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12920-016-0192-7
Integrative regression network for genomic association study
Cited by: 9
Author(s): Reddy Rani Vangimalla, Hyun-Hwan Jeong, Kyung-Ah Sohn
Software Mentions: 4
Published: over 8 years ago
10.1186/s12879-017-2837-3
Acquisition and persistence of strain-specific methicillin-resistant Staphylococcus aureus and their determinants in community nursing homes
Cited by: 3
Author(s): Nataliya G. Batina, Christopher Crnich, Dorte Döpfer
Software Mentions: 4
Published: almost 7 years ago
10.1155/2020/8291036
A Novel Signature Based on mTORC1 Pathway in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zhuomao Mo, Shuqiao Zhang, Shijun Zhang
Software Mentions: 4
Published: about 4 years ago
10.1155/2021/5550116
An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: over 3 years ago
10.1186/s13059-017-1203-5
Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 7 years ago
10.18632/oncotarget.14303
Pan-organ transcriptome variation across 21 cancer types
Cited by: 6
Author(s): Wangxiong Hu, Yanmei Yang, Xiaofen Li, Shu Zheng
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12864-016-3218-9
Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations
Cited by: 9
Author(s): Filippo Biscarini, Hermann Schwarzenbacher, Hubert Pausch, Ezequiel Luís Nicolazzi, Yuri Pirola, Stefano Biffani
Software Mentions: 4
Published: about 8 years ago
10.1186/1471-2156-13-24
Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system
Cited by: 4
Author(s): Ross E. Curtis, Anuj Goyal, Eric P. Xing
Software Mentions: 4
Published: over 12 years ago
10.18632/oncotarget.20940
<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles
Cited by: 29
Author(s): Milan S. Geybels, Min Fang, Jonathan L. Wright, Xiaoyu Qu, Marina Bibikova, Brandy Klotzle, Jie Fan, Ziding Feng, Elaine A. Ostrander, Peter S. Nelson, Janet L. Stanford
Software Mentions: 4
Published: about 7 years ago
10.3389/fgene.2020.612840
Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
Cited by: 3
Author(s): Phillipe Loher, Nestoras Karathanasis
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12863-017-0533-3
Resampling-based tests for Lasso in genome-wide association studies
Cited by: 12
Author(s): Jaron Arbet, Matt McGue, Snigdhansu Chatterjee, Saonli Basu
Software Mentions: 4
Published: over 7 years ago
10.18632/aging.203322
Identification of prognostic long non-coding RNA signature with potential drugs in hepatocellular carcinoma
Cited by: 0
Author(s): Fang Hao, Nan Wang, Xiang Wang, Yongjun Chen, Junqing Wang
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-020-07194-5
A panel of DNA methylation signature from peripheral blood may predict colorectal cancer susceptibility
Cited by: 12
Author(s): Justina Ucheojor Onwuka, Dapeng Li, Yupeng Liu, Hao Huang, Jing Xu, Ying Liu, Yuanyuan Zhang, Yong Zhao
Software Mentions: 4
Published: over 4 years ago
10.1186/s12885-021-08173-0
Comprehensive analyses of competing endogenous RNA networks reveal potential biomarkers for predicting hepatocellular carcinoma recurrence
Cited by: 3
Author(s): Ping Yan, Zuotian Huang, Tong Mou, Yunhai Luo, Yanyao Liu, Baoyong Zhou, Zhen-Rui Cao, Zhongjun Wu
Software Mentions: 4
Published: over 3 years ago
10.3389/fcell.2021.709241
Characterization of Immune-Related Long Non-coding RNAs to Construct a Novel Signature and Predict the Prognosis and Immune Landscape of Soft Tissue Sarcoma
Cited by: 1
Author(s): Zhengjun Lin, Ke Pang, Hongli Liu, Xianghong Zhang, Jia Wan, Tao Zheng, Tang Liu, Weijun Peng
Software Mentions: 4
Published: about 3 years ago
10.3389/fgene.2020.00989
Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: over 4 years ago
10.3390/nu12103099
Contributions of Emotional Overload, Emotion Dysregulation, and Impulsivity to Eating Patterns in Obese Patients with Binge Eating Disorder and Seeking Bariatric Surgery
Cited by: 16
Author(s): Farid Benzerouk, Zoubir Djerada, Éric Bertin, Sarah Barrière, Fabien Gierski, Arthur Kaladjian
Software Mentions: 4
Published: about 4 years ago
10.3389/fcell.2021.646982
Identification of an Immune-Related Risk Signature Correlates With Immunophenotype and Predicts Anti-PD-L1 Efficacy of Urothelial Cancer
Cited by: 7
Author(s): Pengju Li, Shihui Hao, Yongkang Ye, Jinhuan Wei, Yuanyan Tang, Liang Tan, Zhuangyao Liao, Mingxiao Zhang, Jiaying Li, Chengpeng Gui, Jiefei Xiao, Yong Huang, Xu Chen, Jianping Cao, Junhang Luo, Wei Chen
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-021-07911-8
Construction of the optimization prognostic model based on differentially expressed immune genes of lung adenocarcinoma
Cited by: 6
Author(s): Yuanliang Zhai, Bin Zhao, Yuzhen Wang, Lina Li, Jingjin Li, Li Xu, Linhan Chang, Qian Chen, Zhijun Liao
Software Mentions: 4
Published: over 3 years ago
10.3389/fpsyg.2020.01684
The Psychological Impact of the COVID-19 Outbreak on Health Professionals: A Cross-Sectional Study
Cited by: 315
Author(s): Emanuele Maria Giusti, Elisa Pedroli, Guido Edoardo D’Aniello, Chiara Stramba Badiale, Giada Pietrabissa, Chiara Manna, Marco Stramba-Badiale, Giuseppe Riva, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 4
Published: over 4 years ago
10.1186/s12885-020-07331-0
LINC00649 underexpression is an adverse prognostic marker in acute myeloid leukemia
Cited by: 11
Author(s): Chao Guo, Ya-yue Gao, Qianqian Ju, Chunxia Zhang, Ming Gong, Zhenling Li
Software Mentions: 4
Published: about 4 years ago
10.3389/fpsyg.2018.00317
TIMSS 2011 Student and Teacher Predictors for Mathematics Achievement Explored and Identified via Elastic Net
Cited by: 16
Author(s): Jin Eun Yoo
Software Mentions: 4
Published: over 6 years ago
10.3389/fonc.2021.659969
Comparison of Different Machine Models Based on Contrast-Enhanced Computed Tomography Radiomic Features to Differentiate High From Low Grade Clear Cell Renal Cell Carcinomas
Cited by: 6
Author(s): Xu Pei, Ping Wang, Jialiang Ren, Xiaoping Yin, Luyao Ma, Yun Wang, Xiaohai Ma, Bu-Lang Gao
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-020-07712-5
Construction of a nine DNA repair-related gene prognostic classifier to predict prognosis in patients with endometrial carcinoma
Cited by: 7
Author(s): Jinhui Liu, Pinping Jiang, Xucheng Chen, Yujie Shen, Guoliang Cui, Ziyan Ma, Shaojie Zhao, Yan Zhang
Software Mentions: 4
Published: almost 4 years ago
10.3389/fgene.2021.652601
Construction and Comprehensive Prognostic Analysis of a lncRNA–miRNA–mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer
Cited by: 8
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Chuan Qin, Han Zhang, Ziwei Wang
Software Mentions: 4
Published: over 3 years ago
10.1534/g3.116.033332
Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (<i>Manihot esculenta</i>): Implications for the Prediction of Total Genetic Value and the Selection of Varieties
Cited by: 31
Author(s): Marnin D. Wolfe, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 4
Published: about 8 years ago
10.3389/fphys.2021.670989
Strenuous Physical Training, Physical Fitness, Body Composition and Bacteroides to Prevotella Ratio in the Gut of Elderly Athletes
Cited by: 15
Author(s): Katarína Šoltýs, Leonard Lendvorský, Ivan Hric, Eva Baranovičová, Adela Penesová, I. Mikula, Miroslav Böhmer, Jaroslav Budiš, Silvia Vávrová, Jozef Grones, Marián Grendár, Martin Kolísek, Viktor Bielik
Software Mentions: 4
Published: over 3 years ago
10.3389/fphar.2018.01011
In silico Prioritization of Transporter–Drug Relationships From Drug Sensitivity Screens
Cited by: 21
Author(s): Adrián César-Razquin, Enrico Gottardi, Meizhu Yang, Marc Brehme, Julio Sáez-Rodríguez, Giulio Superti‐Furga
Software Mentions: 4
Published: about 6 years ago
10.3389/fonc.2021.604480
Diagnostic Performance of Vascular Permeability and Texture Parameters for Evaluating the Response to Neoadjuvant Chemoradiotherapy in Patients With Esophageal Squamous Cell Carcinoma
Cited by: 1
Author(s): Wen-Bing Ji, Jian Wang, Ronghui Zhou, Minke Wang, Weizhen Wang, Peipei Pang, Min Kong, Chao Zhou
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.687884
CT-Based Radiomics Signature With Machine Learning Predicts MYCN Amplification in Pediatric Abdominal Neuroblastoma
Cited by: 16
Author(s): Xin Chen, Haoru Wang, Kai-Ping Huang, Huan Liu, Hui-Sheng Ding, Li Zhang, Ting Zhang, Wenqing Yu, Ling He
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2020.567160
Value of 18F-FDG PET/CT-Based Radiomics Nomogram to Predict Survival Outcomes and Guide Personalized Targeted Therapy in Lung Adenocarcinoma With EGFR Mutations
Cited by: 10
Author(s): Bin Yang, Han Ji, Jing Zhong, Lifang Ma, Jian Zhong, Hao Dong, Changsheng Zhou, Shaofeng Duan, Chengzhang Zhu, Jiahe Tian, Longjiang Zhang, Rui Wang, Hong Zhu, Guangming Lu
Software Mentions: 4
Published: about 4 years ago
10.3389/fonc.2020.597877
Identification of a Glycolysis-Related LncRNA Signature to Predict Survival in Diffuse Glioma Patients
Cited by: 11
Author(s): Yangyang Wang, Wenqiang Zhou, Shunchang Ma, Xiudong Guan, Dainan Zhang, Jiayi Peng, Xi Wang, Linhao Yuan, Peiliang Li, Beibei Mao, Kang Peng, Deling Li, Chuanbao Zhang, Wang Jia
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcell.2021.699212
A Novel Six Metastasis-Related Prognostic Gene Signature for Patients With Osteosarcoma
Cited by: 12
Author(s): Di Zheng, Kezhou Xia, Ling Yu, Changtian Gong, Yubo Shi, Wěi Li, Yonglong Qiu, Jian Yang, Weichun Guo
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.636451
Integrative Analysis of Histopathological Images and Genomic Data in Colon Adenocarcinoma
Cited by: 7
Author(s): Hui Li, Linyan Chen, Hao Zeng, Qimeng Liao, Jianrui Ji, Xuelei Ma
Software Mentions: 4
Published: about 3 years ago
10.1534/g3.120.401132
Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny
Cited by: 8
Author(s): Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 4 years ago
10.1534/g3.120.401733
Maximum <i>a posteriori</i> Threshold Genomic Prediction Model for Ordinal Traits
Cited by: 3
Author(s): Abelardo Montesinos‐López, Humberto Gutiérrez Pulido, Osval A. Montesinos-L֯ópez, J. Crossa
Software Mentions: 4
Published: about 4 years ago
10.3389/fonc.2021.584896
Comprehensive and Computable Molecular Diagnostic Panel (C2Dx) From Small Volume Specimens for Precision Oncology: Molecular Subtyping of Non-Small Cell Lung Cancer From Fine Needle Aspirates
Cited by: 3
Author(s): Jing Su, Lynn S. Huang, Ryan Barnard, Graham Parks, James O. Cappellari, Christina Bellinger, Travis Dotson, Lou Craddock, Bharat Prakash, Jonathan T. Hovda, Hollins P. Clark, W. Jeffrey Petty, Boris Pasche, Michael D. Chan, Lance D. Miller, Jimmy Ruiz
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-021-08201-z
Predictive nomogram for postoperative pancreatic fistula following pancreaticoduodenectomy: a retrospective study
Cited by: 8
Author(s): Jian Shen, Feng Guo, Yan Sun, Jingyuan Zhao, Jin Hu, Zunxiang Ke, Yushun Zhang, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2020.01057
Prognostic and Predictive Value of a Long Non-coding RNA Signature in Glioma: A lncRNA Expression Analysis
Cited by: 12
Author(s): Yutong Pan, Yiping Zhu, Qingwei Zhang, Chihao Zhang, Anwen Shao, Jianmin Zhang
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2021.670854
Integrative Analysis of DNA Methylation and Transcriptome Identifies a Predictive Epigenetic Signature Associated With Immune Infiltration in Gliomas
Cited by: 7
Author(s): Jianlei Zhang, Yin Jiang, Li Luo, Dongzhou Huang, Dongfeng Zhai, Ge Wang, Ning Xu, Minqiang Yang, Ying Song, Guopei Zheng, Qiong Zhang
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0214061
Expression of socially sensitive genes: The multi-ethnic study of atherosclerosis
Cited by: 7
Author(s): Kristen Brown, Ana V. Diez‐Roux, Jennifer A. Smith, Belinda L. Needham, Bhramar Mukherjee, Erin B. Ware, Yongmei Liu, Steven W. Cole, Teresa E. Seeman, Sharon L.R. Kardia
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0117844
Large Unbalanced Credit Scoring Using Lasso-Logistic Regression Ensemble
Cited by: 61
Author(s): Wang Hong, Qingsong Xu, Lifeng Zhou
Software Mentions: 4
Published: almost 10 years ago
10.1111/jcmm.16696
Establishment and experimental validation of an immune miRNA signature for assessing prognosis and immune landscape of patients with colorectal cancer
Cited by: 28
Author(s): Zaoqu Liu, Taoyuan Lu, Yanli Wang, Dechao Jiao, Zhaonan Li, Libo Wang, Long Liu, Chunguang Guo, Yanan Zhao, Xinwei Han
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0198797
Clinical diagnosis of partial or complete anterior cruciate ligament tears using patients' history elements and physical examination tests
Cited by: 19
Author(s): Simon Décary, Michel Fallaha, Sylvain Belzile, Johanne Martel‐Pelletier, Jean‐Pierre Pelletier, Debbie Feldman, Marie‐Pierre Sylvestre, Pascal‐André Vendittoli, François Desmeules
Software Mentions: 4
Published: over 6 years ago
10.1186/s12859-020-3344-x
Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery
Cited by: 15
Author(s): Xin Guan, George C. Runger, Li Liu
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2021.544979
Machine Learning-Based Ultrasomics Improves the Diagnostic Performance in Differentiating Focal Nodular Hyperplasia and Atypical Hepatocellular Carcinoma
Cited by: 12
Author(s): Wei Li, Xiaozhou Lv, Xin Zheng, Si-Min Ruan, Hang-Tong Hu, Li-Da Chen, Yang Huang, Xin Li, Chu-Qing Zhang, Xian-Jin Xie, Ming Kuang, Ming‐De Lu, Bowen Zhuang, Wei Wang
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0106131
Gene Expression Profiling Reveals Epithelial Mesenchymal Transition (EMT) Genes Can Selectively Differentiate Eribulin Sensitive Breast Cancer Cells
Cited by: 47
Author(s): Zoltán Dezső, Judith Oestreicher, Amy Weaver, Stephanie Santiago, Sergei Agoulnik, Jesse C. Chow, Yoshiya Oda, Yasuhiro Funahashi
Software Mentions: 4
Published: about 10 years ago
10.1038/s41598-021-88845-w
Multitask fMRI and machine learning approach improve prediction of differential brain activity pattern in patients with insomnia disorder
Cited by: 7
Author(s): Mi Hyun Lee, Nambeom Kim, Jaeeun Yoo, Hang-Keun Kim, Young-Don Son, Young-Bo Kim, Seong Min Oh, Soohyun Kim, Hayoung Lee, Jeong Eun Jeon, Yu Jin Lee
Software Mentions: 4
Published: over 3 years ago
10.1111/jcmm.14748
Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
Cited by: 6
Author(s): Yuanlei Chen, Shangjun Jiang, Zeyi Lu, Dingwei Xue, Liqun Xia, Jinmei Lu, Huan Wang, Liwei Xu, Liyang Li, Gonghui Li
Software Mentions: 4
Published: almost 5 years ago
10.1111/jcmm.14779
Four transcription profile–based models identify novel prognostic signatures in oesophageal cancer
Cited by: 9
Author(s): Tongyan Liu, Panqi Fang, Chencheng Han, Zhongliang Ma, Weizhang Xu, Wenjia Xia, Jingwen Hu, Yongming Xu, Lin Xu, Rong Yin, Siwei Wang, Qin Zhang
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0171240
Expectation propagation for large scale Bayesian inference of non-linear molecular networks from perturbation data
Cited by: 5
Author(s): Zahra Narimani, Hamid Beigy, Ashar Ahmad, Ali Masoudi‐Nejad, Holger Fröhlich
Software Mentions: 4
Published: almost 8 years ago
10.3389/fonc.2019.01269
An Integrated Three-Long Non-coding RNA Signature Predicts Prognosis in Colorectal Cancer Patients
Cited by: 27
Author(s): Yuhang Liu, Bingxin Liu, Guoying Jin, Jia Zhang, Xue Wang, Yuyang Feng, Zehua Bian, Bojian Fei, Yuan Yin, Zhaohui Huang
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0119265
Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure
Cited by: 14
Author(s): Gilles Lemesle, Florence Maury, Olivia Beseme, Lionel Ovart, Philippe Amouyel, Nicolas Lamblin, Pascal de Groote, Christophe Bauters, Florence Pinet
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0255675
Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems
Cited by: 3
Author(s): László Zimányi, Áron Sipos, Ferenc Sarlós, Rita Nagypál, Géza I. Groma
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.737867
Genomic Instability-Related LncRNA Signature Predicts the Prognosis and Highlights LINC01614 Is a Tumor Microenvironment-Related Oncogenic lncRNA of Papillary Thyroid Carcinoma
Cited by: 6
Author(s): Xubin Dong, Cong Jin, Danxiang Chen, Yizuo Chen, Zhiqiang Ye, Xiaohua Zhang, Xiaoli Huang, Wei Zhang, Di Gu
Software Mentions: 4
Published: about 3 years ago
10.1111/jcmm.13941
Deciphering molecular properties of hypermutated gastrointestinal cancer
Cited by: 8
Author(s): Wangxiong Hu, Yanmei Yang, Weiting Ge, Shu Zheng
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0226595
Development of a long non-coding RNA signature for prediction of response to neoadjuvant chemoradiotherapy in locally advanced rectal adenocarcinoma
Cited by: 15
Author(s): Lorenzo Ferrando, Gabriella Cirmena, Anna Garuti, Stefano Scabini, Federica Grillo, Luca Mastracci, Edoardo Isnaldi, C. Marrone, Roberta Gonella, Roberto Murialdo, Roberto Fiocca, Emanuele Romairone, Alberto Ballestrero, Gabriele Zoppoli
Software Mentions: 4
Published: almost 5 years ago
10.7150/jca.54475
Development and Validation of a Nomogram based on cell growth-related Biomarkers for Oral Squamous Cell Carcinoma
Cited by: 1
Author(s): Yanjie Shuai, Yuansheng Duan, Mengqian Zhou, Kai Yue, Dandan Liu, Yan Fang, Yuxuan Wang, Yi‐Long Wu, Ze Zhang, Xudong Wang
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0182356
BARD1 serum autoantibodies for the detection of lung cancer
Cited by: 18
Author(s): Maxim Pilyugin, Pascaline Descloux, Pierre Alain André, Viktória László, Balázs Döme, Balázs Hegedűs, Sylvain Sardy, Sam M. Janes, Andrea Bianco, Geoffrey J. Laurent, Irmgard Irminger-Finger
Software Mentions: 4
Published: over 7 years ago
10.7150/jca.57260
Construction of a ceRNA Network and a Prognostic lncRNA Signature associated with Vascular Invasion in Hepatocellular Carcinoma based on Weighted Gene Co-Expression Network Analysis
Cited by: 10
Author(s): Haisu Tao, Li Jiang, Junjie Liu, Tong Yuan, Erlei Zhang, Huifang Liang, Zhiyong Huang
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0170025
Underexpression of Specific Interferon Genes Is Associated with Poor Prognosis of Melanoma
Cited by: 12
Author(s): Aamir Zainulabadeen, Philip Yao, Habil Zare
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0187542
Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome
Cited by: 10
Author(s): Anette McLeod, Ellen Færgestad Mosleth, Ida Rud, Filipe Branco dos Santos, Lars-Gustav Snipen, Kristian Hovde Liland, Lars Axelsson
Software Mentions: 4
Published: about 7 years ago
10.1186/s12915-020-00783-7
Tropomyosin 1 genetically constrains in vitro hematopoiesis
Cited by: 8
Author(s): Christopher S. Thom, Chintan Jobaliya, Kimberly Lorenz, Jean Ann Maguire, Alyssa Gagne, Paul Gadue, Deborah L. French, Benjamin F. Voight
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0233951
Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models
Cited by: 14
Author(s): Yusuke Toda, Hitomi Wakatsuki, Toru Aoike, Hiromi Kajiya‐Kanegae, Mariko Yamasaki, Takuma Yoshioka, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0198961
Modelling of the breadth of expression from promoter architectures identifies pro-housekeeping transcription factors
Cited by: 4
Author(s): Łukasz Huminiecki
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0241367
DNA methylation in blood—Potential to provide new insights into cell biology
Cited by: 3
Author(s): Donia Macartney-Coxson, Alanna M. Cameron, Jane Clapham, Miles C. Benton
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pone.0223692
Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality
Cited by: 12
Author(s): Scott C. Ritchie, Johannes Kettunen, Marta Brożyńska, Artika P. Nath, Aki S. Havulinna, Satu Männistö, Markus Perola, Veikko Salomaa, Mika Ala‐Korpela, Gad Abraham, Peter Würtz, Michael Inouye
Software Mentions: 4
Published: about 5 years ago