cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fgene.2020.00989

Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: about 6 years ago

10.18632/oncotarget.20940

PTEN loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles
Cited by: 29
Author(s): Milan S. Geybels, Min Fang, Jonathan L. Wright, Xiaoyu Qu, Marina Bibikova, Brandy Klotzle, Jie Fan, Ziding Feng, Elaine A. Ostrander, Peter S. Nelson, Janet L. Stanford
Software Mentions: 4
Published: about 9 years ago

10.3389/fgene.2021.652601

Construction and Comprehensive Prognostic Analysis of a lncRNA–miRNA–mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer
Cited by: 8
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Chuan Qin, Han Zhang, Ziwei Wang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-86921-9

Systematic prediction of drug resistance caused by transporter genes in cancer cells
Cited by: 4
Author(s): Yao Shen, Zhipeng Yan
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/6057948

Identification and Verification of a 17 Immune-Related Gene Pair Prognostic Signature for Colon Cancer
Cited by: 3
Author(s): Qianshi Zhang, Zhen Feng, Yongnian Zhang, Shasha Shi, Yu Zhang, Shuo Ren
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.01017

Identification of a Novel Signature and Construction of a Nomogram Predicting Overall Survival in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Xiangkun Wu, Zhijian Zhao, Aisha Khan, Chao Cai, Daojun Lv, Danan Gu, Yongda Liu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-77259-9

A novel methylation signature predicts radiotherapy sensitivity in glioma
Cited by: 5
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Zhiliang Wang, Haiyan Jiang, Ye Chen, Renpeng Li, You Zhai, Yuanhao Chang, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-73700-1

Transcriptome-wide analysis and modelling of prognostic alternative splicing signatures in invasive breast cancer: a prospective clinical study
Cited by: 16
Author(s): Linbang Wang, Yuanyuan Wang, Bao Su, Ping Yü, Jiahui He, Lei Meng, Qin Xiao, Junling Sun, Kai Zhou, Yuzhou Xue, Jinxiang Tan
Software Mentions: 4
Published: about 6 years ago

10.1186/s13059-017-1203-5

Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-72045-z

A data-driven medication score predicts 10-year mortality among aging adults
Cited by: 3
Author(s): Paavo Häppölä, Aki S. Havulinna, Tõnis Tasa, Nina Mars, Markus Perola, Mikko Kallela, Lili Milani, Seppo Koskinen, Veikko Salomaa, Benjamin M. Neale, Aarno Palotie, Mark J. Daly, Samuli Ripatti
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.591623

Identification of Prognostic Biomarkers and Correlation With Immune Infiltrates in Hepatocellular Carcinoma Based on a Competing Endogenous RNA Network
Cited by: 3
Author(s): Zhaoxia Pu, Yuanyuan Zhu, Xiaofang Wang, Yun Zhong, Fang Peng, Yiya Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.614160

An Eight-CpG-based Methylation Classifier for Preoperative Discriminating Early and Advanced-Late Stage of Colorectal Cancer
Cited by: 1
Author(s): Ji Hu, Fu-Ying Zhao, Bin Huang, Ran Jing, Meiyuan Chen, Hailin Liu, You-Song Deng, Xia Zhao, Xiaofan Han
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.103624

POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer
Cited by: 6
Author(s): Jun Q. Lu, Xiaoyan Huang, Yaohui Wang, Jian‐Wei Xie, Jia-Bin Wang, Jiumao Lin, Qi‐Yue Chen, Long‐Long Cao, Ping Li, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2020.01684

The Psychological Impact of the COVID-19 Outbreak on Health Professionals: A Cross-Sectional Study
Cited by: 315
Author(s): Emanuele Maria Giusti, Elisa Pedroli, Guido Edoardo D’Aniello, Chiara Stramba Badiale, Giada Pietrabissa, Chiara Manna, Marco Stramba-Badiale, Giuseppe Riva, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 4
Published: about 6 years ago

10.3389/fpsyg.2018.00317

TIMSS 2011 Student and Teacher Predictors for Mathematics Achievement Explored and Identified via Elastic Net
Cited by: 16
Author(s): Jin Eun Yoo
Software Mentions: 4
Published: over 8 years ago

10.1155/2021/7264623

A Simple-to-Use Nomogram for Predicting Survival in Children with Acute Myeloid Leukemia
Cited by: 8
Author(s): Feng Jiang, Xiang Yu, Chuyan Wu, Ming Wang, Ke Wei, Jimei Wang, Guoping Zhou
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-57542-5

Large-scale Analyses of Disease Biomarkers and Apremilast Pharmacodynamic Effects
Cited by: 11
Author(s): И. В. Медведева, Matthew E. Stokes, Dominic Eisinger, Samuel T. LaBrie, Jing Ai, Matthew Trotter, Peter Schäfer, Robert Yang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-56249-6

Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease
Cited by: 10
Author(s): Jessy A. Slota, Sarah J. Medina, Megan Klassen, Damian Gorski, Christine Mesa, Catherine Robertson, Gordon Mitchell, Michael B. Coulthart, Sandra Pritzkow, Claudio Soto, Stephanie A. Booth
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/6680066

A Prognostic Model for Brain Glioma Patients Based on 9 Signature Glycolytic Genes
Cited by: 8
Author(s): Bing-xiang Xiao, Panxing Wu, Feng Lu, Yan Xiuyou, Chao Ding
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.695806

An Unbiased Machine Learning Exploration Reveals Gene Sets Predictive of Allograft Tolerance After Kidney Transplantation
Cited by: 7
Author(s): Qiang Fu, Divyansh Agarwal, Kevin Deng, Rudy Matheson, Hongji Yang, Wei Liang, Ran Qing, Shaoping Deng, James F. Markmann
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2017.01284

Assessment of the Combined Effect of Epstein–Barr Virus and Plasmodium falciparum Infections on Endemic Burkitt Lymphoma Using a Multiplex Serological Approach
Cited by: 13
Author(s): Ruth Aguilar, Delphine Casabonne, Cristina O’Callaghan-Gordo, Marta Vidal, Joseph J. Campo, Nora Mutalima, Evelina Angov, Sandeep Dutta, Deepak Gaur, Chetan E. Chitnis, Virander S. Chauhan, Angelika Michel, Sílvia de Sanjosé, Tim Waterboer, Manolis Kogevinas, Rob Newton, Carlota Dobaño
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12879-017-2837-3

Acquisition and persistence of strain-specific methicillin-resistant Staphylococcus aureus and their determinants in community nursing homes
Cited by: 3
Author(s): Nataliya G. Batina, Christopher Crnich, Dorte Döpfer
Software Mentions: 4
Published: almost 9 years ago

10.1155/2020/8047146

A Novel Schizophrenia Diagnostic Model Based on Statistically Significant Changes in Gene Methylation in Specific Brain Regions
Cited by: 3
Author(s): Donghua Zou, Yufen Qiu, Rongjie Li, Youshi Meng, Yuan Wu
Software Mentions: 4
Published: over 6 years ago

10.3389/fmed.2020.00451

Evaluating Distribution and Prognostic Value of New Tumor-Infiltrating Lymphocytes in HCC Based on a scRNA-Seq Study With CIBERSORTx
Cited by: 13
Author(s): Lixing Li, Lu Shen, Jianchao Ma, Qiang Zhou, M Li, Hao Wu, Muyun Wei, Di Zhang, Ting Wang, Shengying Qin, Tonghai Xing
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00715

A Comparative Genomic Analysis Provides Novel Insights Into the Ecological Success of the Monophasic Salmonella Serovar 4,[5],12:i:-
Cited by: 42
Author(s): Eleonora Mastrorilli, Daniele Pietrucci, Lisa Barco, Serena Ammendola, Sara Petrin, Alessandra Longo, Claudio Mantovani, Andrea Battistoni, Antonia Ricci, Alessandro Desideri, Carmen Losasso
Software Mentions: 4
Published: over 8 years ago

10.1186/s12920-016-0192-7

Integrative regression network for genomic association study
Cited by: 9
Author(s): Reddy Rani Vangimalla, Hyun-Hwan Jeong, Kyung-Ah Sohn
Software Mentions: 4
Published: about 10 years ago

10.1186/s12874-016-0277-1

Clinical prediction in defined populations: a simulation study investigating when and how to aggregate existing models
Cited by: 21
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 4
Published: over 9 years ago

10.3389/fmolb.2021.679031

Identification and Validation of Immune-Related Gene Signature for Predicting Lymph Node Metastasis and Prognosis in Lung Adenocarcinoma
Cited by: 19
Author(s): Ru Jia, Zhilin Sui, Hongdian Zhang, Zhentao Yu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-45283-z

Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensional T1-weighted MR images with a radiomics approach
Cited by: 61
Author(s): Asuka Oyama, Yasuaki Hiraoka, Ippei Obayashi, Yusuke Saikawa, Shigeru Furui, Kenshiro Shiraishi, Shinobu Kumagai, Tatsuya Hayashi, J. Kotoku
Software Mentions: 4
Published: over 7 years ago

10.1136/gutjnl-2016-313681

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
Cited by: 74
Author(s): E M de Vries, Junfeng Wang, Kate D. Williamson, Mariska Leeflang, Kirsten Boonstra, Rinse K. Weersma, Ulrich Beuers, Roger W. Chapman, Ronald B. Geskus, Cyriel Y. Ponsioen
Software Mentions: 4
Published: about 9 years ago

10.3389/fmolb.2021.729789

Development of a Toll-Like Receptor-Based Gene Signature That Can Predict Prognosis, Tumor Microenvironment, and Chemotherapy Response for Hepatocellular Carcinoma
Cited by: 4
Author(s): Lixia Liu, Bin Liu, Jie Yu, Dongyun Zhang, Jing Shi, Ping Liang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2020.571641

Identification of a Novel Tumor Microenvironment–Associated Eight-Gene Signature for Prognosis Prediction in Lung Adenocarcinoma
Cited by: 36
Author(s): Chi Ma, Huan Luo, Jing Cao, Xiangyu Zheng, Jinjun Zhang, Yanmin Zhang, Zongqiang Fu
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.116.033332

Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties
Cited by: 31
Author(s): Marnin D. Wolfe, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 4
Published: almost 10 years ago

10.3389/fmolb.2021.632950

Comprehensive Metabolomics Identified the Prominent Role of Glycerophospholipid Metabolism in Coronary Artery Disease Progression
Cited by: 10
Author(s): Hui Chen, Zixian Wang, Min Qin, Bin Zhang, Li Jen Lin, Qin Ma, Chen Liu, Xiaoping Chen, Hanping Li, Wen‐Ter Lai, Shilong Zhong
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-37748-4

Association Between Radiomics Signature and Disease-Free Survival in Conventional Papillary Thyroid Carcinoma
Cited by: 28
Author(s): Vivian Youngjean Park, Kyunghwa Han, Eun Jung Lee, Min Jung Kim, Hee Jung Moon, Jung Hyun Yoon, Jin Young Kwak
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giab002

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data
Cited by: 26
Author(s): Brian B. Nadel, David Lopez, Dennis Montoya, Feiyang Ma, Hannah Waddel, Misha M Khan, Serghei Mangul, Matteo Pellegrini
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-40403-1

A multimodal approach to cardiovascular risk stratification in patients with type 2 diabetes incorporating retinal, genomic and clinical features
Cited by: 19
Author(s): Ahmed E. Fetit, Alex S.F. Doney, Stephen Hogg, Ruixuan Wang, Tom MacGillivray, Joanna M. Wardlaw, Fergus Doubal, Gareth J. McKay, Stephen J. McKenna, Emanuele Trucco
Software Mentions: 4
Published: over 7 years ago

10.3389/fmolb.2021.670241

Autophagy-Related Gene Pairs Signature for the Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Yiming Luo, Furong Liu, Shenqi Han, Yongqiang Qi, Xinsheng Hu, Chenyang Zhou, Huifang Liang, Zhiwei Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-37449-y

Identification of Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs)
Cited by: 8
Author(s): Almudena Espín-Pérez, Dennie G. A. J. Hebels, Hannu Kiviranta, Panu Rantakokko, Panagiotis Georgiadis, Maria Botsivali, Ingvar A. Bergdahl, Domenico Palli, Florentin Späth, Anders Johansson, Marc Chadeau‐Hyam, Soterios A. Kyrtopoulos, Jos Kleinjans, Theo M. C. M. de Kok
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2021.706576

Extrahippocampal Radiomics Analysis Can Potentially Identify Laterality in Patients With MRI-Negative Temporal Lobe Epilepsy
Cited by: 3
Author(s): E-Nae Cheong, Ji Eun Park, Da Eun Jung, Woo Hyun Shim
Software Mentions: 4
Published: about 5 years ago

10.1186/s12938-021-00902-7

An immune-related pseudogene signature to improve prognosis prediction of endometrial carcinoma patients
Cited by: 2
Author(s): Shanshan Tang, Yiyi Zhuge
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-33911-z

Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
Cited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: almost 8 years ago

10.1093/gigascience/giaa110

Interpreting k-mer–based signatures for antibiotic resistance prediction
Cited by: 12
Author(s): Magali Jaillard, Mattia Palmieri, Alex van Belkum, Pierre Mahé
Software Mentions: 4
Published: about 6 years ago

10.3389/fnins.2021.657465

Novel Insight Into the Role of Immune Dysregulation in Amyotrophic Lateral Sclerosis Based on Bioinformatic Analysis
Cited by: 7
Author(s): Yuanyang Xie, Ximei Luo, Hongping He, Min Tang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-27707-4

Comprehensive analysis of lung cancer pathology images to discover tumor shape and boundary features that predict survival outcome
Cited by: 71
Author(s): Shidan Wang, Alyssa Chen, Lin Yang, Ling Cai, Yang Xie, Junya Fujimoto, Adi F. Gazdar, Guanghua Xiao
Software Mentions: 4
Published: about 8 years ago

10.1534/g3.120.401132

Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny
Cited by: 8
Author(s): Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.120.401733

Maximum a posteriori Threshold Genomic Prediction Model for Ordinal Traits
Cited by: 3
Author(s): Abelardo Montesinos‐López, Humberto Gutiérrez Pulido, Osval A. Montesinos-L֯ópez, J. Crossa
Software Mentions: 4
Published: almost 6 years ago

10.18632/aging.202173

A novel immune-related genes prognosis biomarker for hepatocellular carcinoma
Cited by: 7
Author(s): Kunpeng Wang, Xinyi Chen, Chong Jin, Jinggang Mo, Hao Jiang, Bin Yi, Xiang Chen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnins.2018.00869

Imbalance of Functional Connectivity and Temporal Entropy in Resting-State Networks in Autism Spectrum Disorder: A Machine Learning Approach
Cited by: 11
Author(s): Robert X. Smith, Kay Jann, Mirella Dapretto, Danny J.J. Wang
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-19004-3

Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma
Cited by: 12
Author(s): Eric R. Gamazon, Matthew R. Trendowski, Yujia Wen, Claudia Wing, Shannon M. Delaney, Won Jae Huh, Shan S. Wong, Nancy J. Cox, Eileen Dolan
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-017-12166-0

A Whole Blood Molecular Signature for Acute Myocardial Infarction
Cited by: 47
Author(s): Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, M. A. Novotny, Roger S. Lasken, Tim Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, K Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol
Software Mentions: 4
Published: about 9 years ago

10.3389/fonc.2021.699789

Machine Learning-Based Analysis of Magnetic Resonance Radiomics for the Classification of Gliosarcoma and Glioblastoma
Cited by: 7
Author(s): Zenghui Qian, Lingling Zhang, Jie Hu, Shuguang Chen, Hongyan Chen, Huicong Shen, Fei Zheng, Yan-Nan Zang, Xuzhu Chen
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.665276

Identification of Prognostic Signature and Gliclazide as Candidate Drugs in Lung Adenocarcinoma
Cited by: 15
Author(s): Cheng Yang, Kezuo Hou, Yizhe Wang, Chen Yang, Xueying Zheng, Jianfei Qi, Bowen Yang, Shiying Tang, Xu Han, Dongyao Shi, Ximing Wang, Yunpeng Liu, Xuejun Hu, Xiaofang Che
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.616263

Immunohistochemical Signature Add Prognostic Value in Patients With Early and Intermediate Hepatocellular Carcinoma Underwent Curative Liver Resection
Cited by: 2
Author(s): Yan Bai, Yuane Lian, Xiaoping Chen, Jiayi Wu, Jianlin Lai, Funan Qiu, Songqiang Zhou, Zijing Zhu, Yuan Tian, Yaodong Wang, Yinghong Yang, Mao-Lin Yan
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.01211

Exploration the Significance of a Novel Immune-Related Gene Signature in Prognosis and Immune Microenvironment of Breast Cancer
Cited by: 15
Author(s): Yajie Zhao, Chunrui Pu, Zhenzhen Liu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-10324-y

Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: about 9 years ago

10.3389/fonc.2021.725922

Radiomic Evaluations of the Diagnostic Performance of DM, DBT, DCE MRI, DWI, and Their Combination for the Diagnosisof Breast Cancer
Cited by: 4
Author(s): Shuxian Niu, Xiaoyu Wang, Nannan Zhao, Guanyu Liu, Yangyang Kan, Yue Dong, Enuo Cui, Yahong Luo, Tao Yu, Xiran Jiang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.01410

Machine Learning-Based Radiomics Nomogram Using Magnetic Resonance Images for Prediction of Neoadjuvant Chemotherapy Efficacy in Breast Cancer Patients
Cited by: 23
Author(s): Shujun Chen, Zhenyu Shu, Yongfeng Li, Bin Chen, Lan Tang, Wenju Mo, Guoliang Shao, Feng Shao
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.674897

Analysis of Immune-Related Signatures Related to CD4+ T Cell Infiltration With Gene Co-Expression Network in Pancreatic Adenocarcinoma
Cited by: 3
Author(s): Zhen Tan, Yubin Lei, Bo Zhang, Si Shi, Jiang Liu, Xianjun Yu, Jin Xu, Chen Liang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12880-021-00564-w

CT-based radiomics combined with signs: a valuable tool to help radiologist discriminate COVID-19 and influenza pneumonia
Cited by: 14
Author(s): Yurong Huang, Zhenguang Zhang, Siyun Liu, Xiang Li, Yaewon Yang, Jiyao Ma, Zhipeng Li, Jialong Zhou, Yuanming Jiang, Bo He
Software Mentions: 4
Published: over 5 years ago

10.1038/srep13373

Smoking Gun or Circumstantial Evidence? Comparison of Statistical Learning Methods using Functional Annotations for Prioritizing Risk Variants
Cited by: 8
Author(s): Sarah A. Gagliano, Reena Ravji, Michael R. Barnes, Michael E. Weale, Jo Knight
Software Mentions: 4
Published: about 11 years ago

10.18632/aging.203079

Identification and validation of a novel eight mutant-derived long non-coding RNAs signature as a prognostic biomarker for genome instability in low-grade glioma
Cited by: 12
Author(s): Aierpati Maimaiti, Xixian Wang, Yinan Pei, Nuerbiye Nuermaimaiti, Abudireheman Tuersunniyazi, Yaeraili Abula, Zhaohai Feng, Lei Jiang, Xin Shi, Maimaitijiang Kasimu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.666199

Prognostic Implication of a Novel Metabolism-Related Gene Signature in Hepatocellular Carcinoma
Cited by: 15
Author(s): Chaoyan Yuan, Mengqin Yuan, Chen Ming-qian, Jinhua Ouyang, Wei Tan, Fangfang Dai, Dongyong Yang, Shiyi Liu, Y. Zheng, Chunqin Zhou, Yanxiang Cheng
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.737867

Genomic Instability-Related LncRNA Signature Predicts the Prognosis and Highlights LINC01614 Is a Tumor Microenvironment-Related Oncogenic lncRNA of Papillary Thyroid Carcinoma
Cited by: 6
Author(s): Xubin Dong, Cong Jin, Danxiang Chen, Yizuo Chen, Zhiqiang Ye, Xiaohua Zhang, Xiaoli Huang, Wei Zhang, Di Gu
Software Mentions: 4
Published: about 5 years ago

10.1186/s12880-019-0355-z

Computed tomography-based predictive nomogram for differentiating primary progressive pulmonary tuberculosis from community-acquired pneumonia in children
Cited by: 21
Author(s): Bei Wang, Min Li, He Ma, Fangfang Han, Yan Wang, Shunying Zhao, Zhimin Liu, Tao Yu, Jie Tian, Di Dong, Yun Peng
Software Mentions: 4
Published: about 7 years ago

10.1093/gigascience/giaa044

Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity
Cited by: 9
Author(s): Benjamin B. Chu, Kevin L. Keys, Christopher A. German, Hua Zhou, Jin Zhou, Eric M. Sobel, Janet S. Sinsheimer, Kenneth Lange
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.584896

Comprehensive and Computable Molecular Diagnostic Panel (C2Dx) From Small Volume Specimens for Precision Oncology: Molecular Subtyping of Non-Small Cell Lung Cancer From Fine Needle Aspirates
Cited by: 3
Author(s): Jing Su, Lynn S. Huang, Ryan Barnard, Graham Parks, James O. Cappellari, Christina Bellinger, Travis Dotson, Lou Craddock, Bharat Prakash, Jonathan T. Hovda, Hollins P. Clark, W. Jeffrey Petty, Boris Pasche, Michael D. Chan, Lance D. Miller, Jimmy Ruiz
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.659969

Comparison of Different Machine Models Based on Contrast-Enhanced Computed Tomography Radiomic Features to Differentiate High From Low Grade Clear Cell Renal Cell Carcinomas
Cited by: 6
Author(s): Xu Pei, Ping Wang, Jialiang Ren, Xiaoping Yin, Luyao Ma, Yun Wang, Xiaohai Ma, Bu-Lang Gao
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00604

Radiomics-Based Preoperative Prediction of Lymph Node Status Following Neoadjuvant Therapy in Locally Advanced Rectal Cancer
Cited by: 31
Author(s): Xuezhi Zhou, Yan Yi, Zhenyu Liu, Zhiyang Zhou, Bingjia Lai, Kai Sun, Longfei Li, Luqi Huang, Yanqiu Feng, Wuteng Cao, Jie Tian
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.704994

Enhanced CT-Based Radiomics to Predict Micropapillary Pattern Within Lung Invasive Adenocarcinoma
Cited by: 4
Author(s): Yunyu Xu, Wenbin Ji, Liqiao Hou, Shuangxiang Lin, Yangyang Shi, Chao Zhou, Yinnan Meng, Wei Wang, Xiaofeng Chen, Meihao Wang, Haihua Yang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.713346

Identification of a Four Hypoxia-Associated Long Non-Coding RNA Signature and Establishment of a Nomogram Predicting Prognosis of Clear Cell Renal Cell Carcinoma
Cited by: 22
Author(s): Hualin Chen, Yang Pan, Xiaoxiang Jin, Gang Chen
Software Mentions: 4
Published: about 5 years ago

10.1002/gepi.22374

Multi‐tissue transcriptome‐wide association studies
Cited by: 8
Author(s): Nastasiya F. Grinberg, Chris Wallace
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.01302

Prognostic Value of Immune-Related Genes in the Tumor Microenvironment of Bladder Cancer
Cited by: 23
Author(s): Faping Li, Haolin Teng, Mingdi Liu, Bin Liu, Difei Zhang, Zhixiang Xu, Yishu Wang, Honglan Zhou
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2018.00585

Plasma-Derived Inflammatory Proteins Predict Oral Squamous Cell Carcinoma
Cited by: 15
Author(s): Kelly Yi Ping Liu, Xian Lu, Yuqi Zhu, Nhu D. Le, Hugh Kim, Catherine F. Poh
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12880-021-00633-0

Radiomic analysis of Gd-EOB-DTPA-enhanced MRI predicts Ki-67 expression in hepatocellular carcinoma
Cited by: 19
Author(s): Yanfen Fan, Yanxia Yu, Ximing Wang, Mengjie Hu, Chunhong Hu
Software Mentions: 4
Published: over 5 years ago

10.1590/1678-4685-GMB-2018-0269

Large miRNA survival analysis reveals a prognostic four-biomarker signature for triple negative breast cancer
Cited by: 15
Author(s): Fernando Andrade, Akinori Nakata, Noriko Gotoh, André Fujita
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-020-02006-2

Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Cited by: 29
Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek
Software Mentions: 4
Published: over 6 years ago

10.1155/2018/9157194

Childcare Correlates of Physical Activity, Sedentary Behavior, and Adiposity in Preschool Children: A Cross-Sectional Analysis of the SPLASHY Study
Cited by: 10
Author(s): Amar Arhab, Nadine Messerli‐Bürgy, Tanja H. Kakebeeke, Stefano Lanzi, Kerstin Stülb, Annina Zysset, Claudia S. Leeger‐Aschmann, Einat A. Schmutz, Andrea Meyer, Simone Munsch, Susi Kriemler, Oskar G. Jenni, Jardena J. Puder
Software Mentions: 4
Published: almost 8 years ago

10.3389/fonc.2020.01550

A Nomogram for the Prediction of Progression and Overall Survival in Childhood Acute Lymphoblastic Leukemia
Cited by: 5
Author(s): Dan Zhang, Yu Cheng, Jia Fan, Juan Yao, Zijun Zhao, Yao Jiang, Yiqin Li, Zhihua Zuo, Yan Tang, Yongcan Guo
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.663802

A Nomogram for Predicting Lymphovascular Invasion in Superficial Esophageal Squamous Cell Carcinoma
Cited by: 1
Author(s): Rongwei Ruan, Shengsen Chen, Yunxia Tao, Jiangping Yu, Danping Zhou, Chun‐Mei Zhao, Qiwen Shen, Shi Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.590861

Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
Cited by: 89
Author(s): Shenghua Zhuo, Zhimin Chen, Yibei Yang, Jinben Zhang, Jianming Tang, Kun Yang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2019.01269

An Integrated Three-Long Non-coding RNA Signature Predicts Prognosis in Colorectal Cancer Patients
Cited by: 27
Author(s): Yuhang Liu, Bingxin Liu, Guoying Jin, Jia Zhang, Xue Wang, Yuyang Feng, Zehua Bian, Bojian Fei, Yuan Yin, Zhaohui Huang
Software Mentions: 4
Published: almost 7 years ago

10.1186/s41927-019-0078-3

Abstracts of scientific contributions to GCOM 2019
Cited by: 0
Author(s):
Software Mentions: 4
Published: about 7 years ago

10.1186/s13104-020-05371-0

FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: almost 6 years ago

10.1111/jcmm.16696

Establishment and experimental validation of an immune miRNA signature for assessing prognosis and immune landscape of patients with colorectal cancer
Cited by: 28
Author(s): Zaoqu Liu, Taoyuan Lu, Yanli Wang, Dechao Jiao, Zhaonan Li, Libo Wang, Long Liu, Chunguang Guo, Yanan Zhao, Xinwei Han
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.544979

Machine Learning-Based Ultrasomics Improves the Diagnostic Performance in Differentiating Focal Nodular Hyperplasia and Atypical Hepatocellular Carcinoma
Cited by: 12
Author(s): Wei Li, Xiaozhou Lv, Xin Zheng, Si-Min Ruan, Hang-Tong Hu, Li-Da Chen, Yang Huang, Xin Li, Chu-Qing Zhang, Xian-Jin Xie, Ming Kuang, Ming‐De Lu, Bowen Zhuang, Wei Wang
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.14748

Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
Cited by: 6
Author(s): Yuanlei Chen, Shangjun Jiang, Zeyi Lu, Dingwei Xue, Liqun Xia, Jinmei Lu, Huan Wang, Liwei Xu, Liyang Li, Gonghui Li
Software Mentions: 4
Published: almost 7 years ago

10.1111/jcmm.14779

Four transcription profile–based models identify novel prognostic signatures in oesophageal cancer
Cited by: 9
Author(s): Tongyan Liu, Panqi Fang, Chencheng Han, Zhongliang Ma, Weizhang Xu, Wenjia Xia, Jingwen Hu, Yongming Xu, Lin Xu, Rong Yin, Siwei Wang, Qin Zhang
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2020.01057

Prognostic and Predictive Value of a Long Non-coding RNA Signature in Glioma: A lncRNA Expression Analysis
Cited by: 12
Author(s): Yutong Pan, Yiping Zhu, Qingwei Zhang, Chihao Zhang, Anwen Shao, Jianmin Zhang
Software Mentions: 4
Published: about 6 years ago

10.1111/jcmm.13941

Deciphering molecular properties of hypermutated gastrointestinal cancer
Cited by: 8
Author(s): Wangxiong Hu, Yanmei Yang, Weiting Ge, Shu Zheng
Software Mentions: 4
Published: almost 8 years ago

10.3389/fonc.2021.636451

Integrative Analysis of Histopathological Images and Genomic Data in Colon Adenocarcinoma
Cited by: 7
Author(s): Hui Li, Linyan Chen, Hao Zeng, Qimeng Liao, Jianrui Ji, Xuelei Ma
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.597877

Identification of a Glycolysis-Related LncRNA Signature to Predict Survival in Diffuse Glioma Patients
Cited by: 11
Author(s): Yangyang Wang, Wenqiang Zhou, Shunchang Ma, Xiudong Guan, Dainan Zhang, Jiayi Peng, Xi Wang, Linhao Yuan, Peiliang Li, Beibei Mao, Kang Peng, Deling Li, Chuanbao Zhang, Wang Jia
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.54475

Development and Validation of a Nomogram based on cell growth-related Biomarkers for Oral Squamous Cell Carcinoma
Cited by: 1
Author(s): Yanjie Shuai, Yuansheng Duan, Mengqian Zhou, Kai Yue, Dandan Liu, Yan Fang, Yuxuan Wang, Yi‐Long Wu, Ze Zhang, Xudong Wang
Software Mentions: 4
Published: almost 6 years ago

10.7150/jca.57260

Construction of a ceRNA Network and a Prognostic lncRNA Signature associated with Vascular Invasion in Hepatocellular Carcinoma based on Weighted Gene Co-Expression Network Analysis
Cited by: 10
Author(s): Haisu Tao, Li Jiang, Junjie Liu, Tong Yuan, Erlei Zhang, Huifang Liang, Zhiyong Huang
Software Mentions: 4
Published: almost 6 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.567160

Value of 18F-FDG PET/CT-Based Radiomics Nomogram to Predict Survival Outcomes and Guide Personalized Targeted Therapy in Lung Adenocarcinoma With EGFR Mutations
Cited by: 10
Author(s): Bin Yang, Han Ji, Jing Zhong, Lifang Ma, Jian Zhong, Hao Dong, Changsheng Zhou, Shaofeng Duan, Chengzhang Zhu, Jiahe Tian, Longjiang Zhang, Rui Wang, Hong Zhu, Guangming Lu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12889-019-7861-3

Health as an independent predictor of the 2017 French presidential voting behaviour: a cross-sectional analysis
Cited by: 5
Author(s): Jean–David Zeitoun, Matthieu Faron, Sophie de Vaugrigneuse, Jérémie H. Lefèvre
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2021.687884

CT-Based Radiomics Signature With Machine Learning Predicts MYCN Amplification in Pediatric Abdominal Neuroblastoma
Cited by: 16
Author(s): Xin Chen, Haoru Wang, Kai-Ping Huang, Huan Liu, Hui-Sheng Ding, Li Zhang, Ting Zhang, Wenqing Yu, Ling He
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: about 8 years ago

Projects: cran: glmnet

Science Score: 100/100

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Papers Mentioning glmnet 1,607