cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-94646-y

RNA-Seq reveals divergent gene expression between larvae with contrasting trophic modes in the poecilogonous polychaete Boccardia wellingtonensis
Cited by: 2
Author(s): A R Ricardo Figueroa, Antonio Brante, Leyla Cárdenas
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94407-x

Randomized clinical trial shows no substantial modulation of empathy-related neural activation by intranasal oxytocin in autism
Cited by: 9
Author(s): Annalina V. Mayer, Anne-Kathrin Wermter, Sanna Stroth, Peter Alter, Michael Haberhausen, Thomas Stehr, Frieder M. Paulus, Sören Krach, Inge Kamp‐Becker
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94499-5

Estrogen-related receptor alpha (ERRα) is a key regulator of intestinal homeostasis and protects against colitis
Cited by: 8
Author(s): Allan Tran, Charlotte Scholtes, Mário Songane, Claudia Champagne, Luc Galarneau, Marie-Pier Levasseur, Nassima Fodil, Catherine R. Dufour, Vincent Giguère, Maya Saleh
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94027-5

A new strategy to uncover fragile X proteomic biomarkers using the nascent proteome of peripheral blood mononuclear cells (PBMCs)
Cited by: 4
Author(s): Olivier Dionne, François Corbin
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94067-x

Neural network modeling of altered facial expression recognition in autism spectrum disorders based on predictive processing framework
Cited by: 8
Author(s): Yuta Takahashi, Satoshi Murata, Hayato Idei, Hiroaki Tomita, Yuichi Yamashita
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94350-x

Population consequences of climate change through effects on functional traits of lentic brown trout in the sub-Arctic
Cited by: 1
Author(s): Kim Magnus Bærum, Anders G. Finstad, Eva Marita Ulvan, Thrond O. Haugen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0099899

A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays
Cited by: 12
Author(s): Sigrún H. Lund, Daníel F. Guðbjartsson, Thorunn Rafnar, Ásgeir Sigurðsson, Sigurjon A. Gudjonsson, Jūlı́us Guðmundsson, Kári Stefánsson, Gunnar Stefánsson
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-021-95024-4

Machine learning to predict distal caries in mandibular second molars associated with impacted third molars
Cited by: 2
Author(s): Sung-Hwi Hur, Eun-Young Lee, Minkyung Kim, Somi Kim, Ji‐Yeon Kang, Jae Seok Lim
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-95113-4

GC-TOF/MS-based metabolomics analysis to investigate the changes driven by N-Acetylcysteine in the plant-pathogen Xanthomonas citri subsp. citri
Cited by: 3
Author(s): Simone Cristina Picchi, Mariana de Souza e Silva, Luiz Leonardo Saldanha, Henrique Ferreira, Marco Aurélio Takita, Camila Caldana, Alessandra Alves de Souza
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94963-2

Development of a CNS-permeable reactivator for nerve agent exposure: an iterative, multi-disciplinary approach
Cited by: 5
Author(s): Brian J. Bennion, Michael Malfatti, Nicholas A. Be, Heather A. Enright, Saphon Hok, C. Linn Cadieux, Timothy S. Carpenter, Victoria Lao, Edward A. Kuhn, M. Windy McNerney, Felice C. Lightstone, Tin Nguyen, Carlos A. Valdez
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-95307-w

Identification and characterization of Piwi-interacting RNAs in human placentas of preeclampsia
Cited by: 2
Author(s): Jie He, Miaomiao Chen, Jiacheng Xu, Jie Fang, Zheng Liu, Hongbo Qi
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0208548

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds
Cited by: 8
Author(s): Salvatore Mastrangelo, Filippo Biscarini, Marco Tolone, Barbara Auzino, Marco Ragatzu, Andrea Spaterna, Roberta Ciampolini
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0188824

Technological variability in the Late Palaeolithic lithic industries of the Egyptian Nile Valley: The case of the Silsilian and Afian industries
Cited by: 5
Author(s): Alice Leplongeon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0190345

Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic
Cited by: 24
Author(s): Eneko Bachiller, Kjell Rong Utne, Teunis Jansen, Geir Huse
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-95417-5

Alterations in protein expression and site-specific N-glycosylation of prostate cancer tissues
Cited by: 8
Author(s): Simon Sugár, Gábor Tóth, Fanni Bugyi, Károly Vékey, Katalin Karászi, László Drahos, Lilla Turiák
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-95421-9

Validity of the Gender Dysphoria diagnosis and incidence trends in Sweden: a nationwide register study
Cited by: 11
Author(s): Malin Indremo, Richard A. White, Thomas Frisell, Sven Cnattingius, Alkistis Skalkidou, Johan Isaksson, Fotios C. Papadopoulos
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0101151

Miz-1 Activates Gene Expression via a Novel Consensus DNA Binding Motif
Cited by: 13
Author(s): Bonnie L. Barrilleaux, Dana Burow, Sarah H. Lockwood, Abigail Yu, David J. Segal, Paul S. Knoepfler
Software Mentions: 1
Published: almost 12 years ago

10.1007/s00122-021-03902-2

Unraveling the genetics of tomato fruit weight during crop domestication and diversification
Cited by: 8
Author(s): Lara Pereira, Lei Zhang, Manoj Sapkota, Alexis Ramos, Hamid Razifard, Ana L. Caicedo, Esther van der Knaap
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0227003

Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss)
Cited by: 15
Author(s): Bernat Morro, Mary K. Doherty, Pablo Balseiro, Sigurd O. Handeland, Simon Mackenzie, Harald Sveier, Amaya Albalat
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0187568

Computer simulation models as a tool to investigate the role of microRNAs in osteoarthritis
Cited by: 12
Author(s): Carole J. Proctor, Graham R. Smith
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0227250

Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici and the potential for rapid asexual evolution
Cited by: 13
Author(s): Jian Hu, Sandesh Shrestha, Yuxin Zhou, Joann Mudge, Xili Liu, Kurt Lamour
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.56539

Mutational spectrum and precision oncology for biliary tract carcinoma
Cited by: 27
Author(s): Jianzhen Lin, Yinghao Cao, Yang Xu, Guangyu Li, Yang Shi, Dongxu Wang, Junyu Long, Yang Song, Jianshan Mao, Fucun Xie, Yi Bai, Lei Zhang, Xiaobo Yang, Xueshuai Wan, Anqiang Wang, Mei Guan, Lin Zhao, Ke Hu, Jie Pan, Li Huo, Xin Lü, Yilei Mao, Xinting Sang, Henghui Zhang, Kai Wang, Xiaoyue Wang, Haitao Zhao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0233709

From nutrients to competition processes: Habitat specific threats to Arnica montana L. populations in Hesse, Germany
Cited by: 9
Author(s): Verena Hollmann, Tobias W. Donath, Florian Grammel, Tina Himmighofen, Ute Zerahn, Ilona Leyer
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0157912

Assessing the Complex and Evolving Relationship between Charges and Payments in US Hospitals: 1996 – 2012
Cited by: 13
Author(s): Hannah Hamavid, Maxwell Birger, Anne Bulchis, Liya Lomsadze, Jonathan Joseph, Ranju Baral, Anthony L. Bui, Cody Horst, Elizabeth Johnson, Joseph L Dieleman
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.toxlet.2020.10.008

Optimising testing strategies for classification of human health and environmental hazards – A proof-of-concept study
Cited by: 1
Author(s): Emilie Da Silva, Anders Baun, Elisabet Berggren, Andrew Worth
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0154807

Virtual Hand Feedback Reduces Reaction Time in an Interactive Finger Reaching Task
Cited by: 9
Author(s): Johannes Brand, Marco Piccirelli, Marie-Claude Hepp-Reymond, Manfred Morari, Lars Michels, Kynan Eng
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.24650

Acquired resistance to temsirolimus is associated with integrin α7 driven chemotactic activity of renal cell carcinoma in vitro
Cited by: 3
Author(s): Tobias Engl, Jochen Rutz, Sebastian Maxeiner, Sorel Fanguen, Eva Juengel, Sebastian E. Koschade, Frederik C. Roos, Wael Khoder, Igor Tsaur, Roman A. Blaheta
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins9110369

Membrane-Active Properties of an Amphitropic Peptide from the CyaA Toxin Translocation Region
Cited by: 19
Author(s): Alexis Voegele, Orso Subrini, Nicolas Sapay, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins10080314

Accumulation and Biotransformation of Dinophysis Toxins by the Surf Clam Mesodesma donacium
Cited by: 23
Author(s): Juan Blanco, Gonzalo Álvarez, José Rengel, Rafael Manuel Jiménez Díaz, Carmen Mariño, Helena Martín, Eduardo Uribe
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0066151

Optical Coherence Tomography Reveals Distinct Patterns of Retinal Damage in Neuromyelitis Optica and Multiple Sclerosis
Cited by: 149
Author(s): Eric Schneider, Hanna Zimmermann, Timm Oberwahrenbrock, Falko Kaufhold, Ella Maria Kadas, Axel Petzold, F Bilger, Nadja Borisow, Sven Jarius, Brigitte Wildemann, Klemens Ruprecht, Alexander U. Brandt, Friedemann Paul
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.25226

Differential prognostic impact of interleukin-34 mRNA expression and infiltrating immune cell composition in intrinsic breast cancer subtypes
Cited by: 32
Author(s): Karin Zins, Gerwin Heller, Mathias Mayerhofer, Martin Schreiber, Dietmar Abraham
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0185762

The common oncogenomic program of NOTCH1 and NOTCH3 signaling in T-cell acute lymphoblastic leukemia
Cited by: 29
Author(s): Sung Hee Choi, Eric Allan Severson, Warren S. Pear, Xiaole S. Liu, Jon C. Aster, Stephen C. Blacklow
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins11120727

Co-Occurrence of DON and Emerging Mycotoxins in Worldwide Finished Pig Feed and Their Combined Toxicity in Intestinal Cells
Cited by: 42
Author(s): Abdullah Khan Khoshal, Barbara Novak, Pascal G.P. Martin, Timothy Jenkins, Manon Neves, Gerd Schatzmayr, Isabelle P. Oswald, Philippe Pinton
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12050339

Diversity and Toxigenicity of Fungi that Cause Pineapple Fruitlet Core Rot
Cited by: 7
Author(s): Bastien Barral, Marc Chillet, Anna Doizy, Maeva Grassi, Laetitia Ragot, Mathieu Léchaudel, Noël Durand, Lindy Joy Rose, Altus Viljoen, Sabine Schorr‐Galindo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0256035

No difference in biomarkers of ischemic heart injury and heart failure in patients with COVID-19 who received treatment with chloroquine phosphate and those who did not
Cited by: 0
Author(s): Josefine Beck-Friis, Susannah Leach, Elmir Ömerovic, Rickard Zeijlon, Magnus Gisslén, Aylin Yilmaz
Software Mentions: 1
Published: almost 5 years ago

10.3390/toxins12110734

Single-Dose Toxicity of Individual and Combined Sterigmatocystin and 5-Methoxysterigmatocistin in Rat Lungs
Cited by: 4
Author(s): Daniela Jakšić, Ida Ćurtović, Domagoj Kifer, Dubravka Rašić, Nevenka Kopjar, Vedran Micek, Maja Peraica, Maja Šegvić Klarić
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0208828

Schizophrenia-associated mt-DNA SNPs exhibit highly variable haplogroup affiliation and nuclear ancestry: Bi-genomic dependence raises major concerns for link to disease
Cited by: 12
Author(s): Christian Munch Hagen, Vanessa F. Gonçalves, Paula L. Hedley, Jonas Bybjerg‐Grauholm, Marie Bækvad‐Hansen, Christine Søholm Hansen, Jørgen K. Kanters, Jimmi Nielsen, Ole Mors, Alfonso Buil Demur, Thomas Damm Als, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, James L. Kennedy, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0153071

Is Shape of a Fresh and Dried Leaf the Same?
Cited by: 20
Author(s): Dominik Tomaszewski, Angelika Górzkowska
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-015-1678-y

Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome
Cited by: 49
Author(s): Thomas Dugé de Bernonville, Emilien Foureau, Claire Parage, Arnaud Lanoue, Marc Clastre, Monica Arias Londono, Audrey Oudin, Benjamin Houillé, Nicolas Papon, Sébastien Besseau, Gaëlle Glévarec, Lucía Atehortúa, Nathalie Giglioli-Guivarc’h, Benoit St-Pierre, Vincenzo De Luca, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 1
Published: almost 11 years ago

10.1093/tas/txab033

High-throughput genotype-based population structure analysis of selected buffalo breeds
Cited by: 3
Author(s): Prakash B Thakor, Ankit T. Hinsu, Dhruv Bhatia, Tejas Shah, Nilesh Nayee, A Sudhakar, D. N. Rank, Chaitanya Joshi
Software Mentions: 1
Published: about 5 years ago

10.1016/j.tranon.2018.08.006

Somatic TP53 Mutations Are Detectable in Circulating Tumor DNA from Children with Anaplastic Wilms Tumors
Cited by: 20
Author(s): Taryn D. Treger, Tasnim Chagtai, Robert Butcher, George D Cresswell, Reem Al‐Saadi, Jesper Brok, Richard D. Williams, Chrissy h. Roberts, Nicholas M. Luscombe, Kathy Pritchard‐Jones, William Mifsud
Software Mentions: 1
Published: over 7 years ago

10.1038/tp.2014.127

Plasma lipidomics analysis finds long chain cholesteryl esters to be associated with Alzheimer’s disease
Cited by: 100
Author(s): Petroula Proitsi, M Kim, Luke Whiley, Megan Pritchard, Rufina Leung, Hilkka Soininen, Iwona Kłoszewska, Patrizia Mecocci, Magda Tsolaki, Bruno Vellas, Pak C. Sham, Simon Lovestone, John Powell, Richard Dobson, Cristina Legido‐Quigley
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2334-14-460

The frequency of tetracycline resistance genes co-detected with respiratory pathogens: a database mining study uncovering descriptive trends throughout the United States
Cited by: 1
Author(s): Matthew Huff, David Weisman, John S. Adams, Song Li, Jessica Green, Leslie Malone, Scott Clemmons
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41398-020-00931-1

Testing relationships between multimodal modes of brain structural variation and age, sex and polygenic scores for neuroticism in children and adolescents
Cited by: 3
Author(s): Linn B. Norbom, Jaroslav Rokicki, Dennis van der Meer, Dag Alnæs, null Nhat Trung Doan, Torgeir Moberget, Tobias Kaufmann, Ole A. Andreassen, Lars T. Westlye, Christian K. Tamnes
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0167127

Genome-Scale Assessment of Age-Related DNA Methylation Changes in Mouse Spermatozoa
Cited by: 13
Author(s): Norio Kobayashi, Hiroaki Okae, Hitoshi Hiura, Hayato Chiba, Yoshiki Shirakata, Kenshiro Hara, Kentaro Tanemura, Takahiro Arima
Software Mentions: 1
Published: over 9 years ago

10.1038/s41398-021-01213-0

1q21.1 distal copy number variants are associated with cerebral and cognitive alterations in humans
Cited by: 23
Author(s): Ida Elken Sønderby, Dennis van der Meer, Clara Moreau, Tobias Kaufmann, G. Bragi Walters, Maria Ellegaard, Abdel Abdellaoui, David Ames, Katrin Amunts, Micael Andersson, Nicola J. Armstrong, Manon Bernard, Nicholas B. Blackburn, John Blangero, Dorret I. Boomsma, Henry Brodaty, Rachel M. Brouwer, Robin Bülow, Rune Bøen, Wiepke Cahn, Vince D. Calhoun, Svenja Caspers, Christopher R. K. Ching, Sven Cichon, Simone Ciufolini, Benedicto Crespo‐Facorro, Joanne E. Curran, Anders M. Dale, Shareefa Dalvie, Paola Dazzan, Eco J. C. de Geus, Greig I. de Zubicaray, Sonja M C de Zwarte, Sylvane Desrivières, Joanne L. Doherty, Gary Donohoe, Bogdan Draganski, Stefan Ehrlich, Else Eising, Thomas Espeseth, Kim Fejgin, Simon E. Fisher, Tormod Fladby, Oleksandr Frei, Vincent Frouin, Masaki Fukunaga, Thomas Gareau, Tian Ge, David C. Glahn, Hans J. Grabe, Nynke A. Groenewold, Ómar Gústafsson, Jan Haavik, Asta Håberg, Jérémy Hall, Ryota Hashimoto, Jayne Y. Hehir-Kwa, Derrek P. Hibar, Manon H. J. Hillegers, Per Hoffmann, Laurena Holleran, Avram J. Holmes, Georg Homuth, Jouke‐Jan Hottenga, Hilleke E. Hulshoff Pol, Masashi Ikeda, Neda Jahanshad, Christiane Jockwitz, Stefan Johansson, Erik G. Jönsson, Niklas Rye Jørgensen, Masataka Kikuchi, Emma Knowles, Kuldeep Kumar, Stéphanie Le Hellard, Costin Leu, David Linden, Jingyu Liu, Arvid Lundervold, Anne Maillard, Nicholas G. Martin, Sandra Martin‐Brevet, Karen A. Mather, Samuel R. Mathias, Katie L. McMahon, Allan F. McRae, Sarah E. Medland, Andreas Meyer‐Lindenberg, Torgeir Moberget, Claudia Modenato, Jennifer Monereo Sánchez, Derek W. Morris, Thomas W. Mühleisen, Robin M. Murray, Jacob Nielsen, Jan Egil Nordvik, Lars Nyberg, Loes Olde Loohuis, Roel A. Ophoff, Michael John Owen, Tomáš Paus, Zdenka Pausová, Juan M. Peralta, G. Bruce Pike, Carlos Prieto, Erin Burke Quinlan, Céline S. Reinbold, Tiago Reis Marques, James Rucker, Perminder S. Sachdev, Sigrid Botne Sando, Peter R. Schofield, Andrew J. Schork, Gunter Schümann, Jean Shin, Elena Shumskaya, Ana Isabel Silva, Sanjay M. Sisodiya, Vidar M. Steen, Dan J. Stein, Lachlan T. Strike, Ikuo Suzuki, Christian K. Tamnes, Alexander Teumer, Anbupalam Thalamuthu, Diana Tordesillas‐Gutiérrez, Anne Uhlmann, Magnus O. Ulfarsson, Dennis van ‘t Ent, Marianne B. M. van den Bree, Pierre Vanderhaeghen, Evangelos Vassos, Wen Wang, Katharina Wittfeld, Margaret J. Wright, Ingrid Agartz, Srdjan Djurovic, Lars T. Westlye, Hreinn Stefánsson, Kāri Stefánsson, Sébastien Jacquemont, Paul M. Thompson, Ole A. Andreassen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-021-01328-4

Subgenual cingulate resting regional cerebral blood flow in premenstrual dysphoric disorder: differential regulation by ovarian steroids and preliminary evidence for an association with expression of ESC/E(Z) complex genes
Cited by: 4
Author(s): Shau-Ming Wei, Erica B. Baller, Pedro E. Martinez, Allison Goff, Howard J. Li, Philip D. Kohn, J. Shane Kippenhan, Steven J. Soldin, David R. Rubinow, David Goldman, Peter J. Schmidt, Karen F. Berman
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0061875

Managing Hytrosavirus Infections in Glossina pallidipes Colonies: Feeding Regime Affects the Prevalence of Salivary Gland Hypertrophy Syndrome
Cited by: 24
Author(s): Adly M. M. Abd-Alla, Henry M. Kariithi, Abdul Hasim Mohamed, Edgardo Lapiz, Andrew G. Parker, Marc J. B. Vreysen
Software Mentions: 1
Published: about 13 years ago

10.1038/s41398-021-01591-5

Genetic polymorphism of CYP2C19 and subcortical variability in the human adult brain
Cited by: 7
Author(s): Julia Stingl, Catharina Scholl, Julia Bosch, Roberto Viviani
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41398-021-01620-3

Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior
Cited by: 44
Author(s): Evelyn Medawar, Sven-Bastiaan Haange, Ulrike Rolle-Kampczyk, Beatrice Engelmann, Arne Dietrich, Ronja Thieleking, Charlotte Wiegank, Charlotte Fries, Annette Horstmann, Arno Villringer, Martin von Bergen, Wiebke Fenske, A. Veronica Witte
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0129100

Nevirapine Concentration in Hair Samples Is a Strong Predictor of Virologic Suppression in a Prospective Cohort of HIV-Infected Patients
Cited by: 41
Author(s): Sanjiv M. Baxi, Ruth M. Greenblatt, Peter Bacchetti, Chengshi Jin, Audrey L. French, Marla J. Keller, Michael Augenbraun, Stephen J. Gange, Chenglong Liu, Wendy J. Mack, Monica Gandhi, Women’s Interagency Hiv Study
Software Mentions: 1
Published: about 11 years ago

10.1186/s13063-015-0970-0

The Patient Remote Intervention and Symptom Management System (PRISMS) – a Telehealth- mediated intervention enabling real-time monitoring of chemotherapy side-effects in patients with haematological malignancies: study protocol for a randomised controlled trial
Cited by: 58
Author(s): Sibilah Breen, David Ritchie, Penelope Schofield, Y Hsueh, Karla Gough, Nick Santamaria, Rose Kamateros, Roma Maguire, Nora Kearney, Sanchia Aranda
Software Mentions: 1
Published: over 10 years ago

10.1186/s12879-018-3248-9

Prevalence of human anelloviruses in Romanian healthy subjects and patients with common pathologies
Cited by: 22
Author(s): Sonia Spandole-Dinu, Dănuţ Cimponeriu, Anne-Marie Crăciun, I Radu, Silvia Nica, Mihai Toma, Oana Andrada Alexiu, Corneliu Sorin Iorga, Lavinia-Mariana Berca, Remus Nica
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.26889

A high-throughput screen of pharmacologically active compounds for inhibitors of UHRF1 reveals epigenetic activity of anthracycline derivative chemotherapeutic drugs
Cited by: 12
Author(s): Hugh Giovinazzo, David Walker, Nicolas Wyhs, Jianyong Liu, David Esopi, Ajay Vaghasia, Yash Jain, Akshay Bhamidipati, Jianya Zhou, William G. Nelson, Srinivasan Yegnasubramanian
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0184548

Estimating the incidence of interstitial lung diseases in the Cree of Eeyou Istchee, northern Québec
Cited by: 8
Author(s): Matthieu Storme, Alexandre Semionov, Deborah Assayag, Michael Lefson, Darlene Kitty, David Dannenbaum, Jill Torrie, Pierre Lejeune, Elizabeth Robinson, Faiz Ahmad Khan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0201400

The genetic connectedness calculated from genomic information and its effect on the accuracy of genomic prediction
Cited by: 3
Author(s): Suoyu Zhang, Babatunde Shittu Olasege, Dengying Liu, Qishan Wang, Yuchun Pan, Peipei Ma
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0172630

Scarless deletion of up to seven methyl-accepting chemotaxis genes with an optimized method highlights key function of CheM in Salmonella Typhimurium
Cited by: 45
Author(s): Stefanie Hoffmann, Christiane Schmidt, Steffi Walter, Jennifer K. Bender, Roman G. Gerlach
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2172-12-11

Ketamine inhibits tumor necrosis factor secretion by RAW264.7 murine macrophages stimulated with antibiotic-exposed strains of community-associated, methicillin-resistant Staphylococcus aureus
Cited by: 17
Author(s): Thomas Spentzas, Rebekah K H Shapley, Carlos Acuna Aguirre, Elizabeth Meals, Linda F. Lazar, Mark Rayburn, Brett S. Walker, B. Keith English
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0234182

Focused ultrasound for safe and effective release of brain tumor biomarkers into the peripheral circulation
Cited by: 23
Author(s): Lifei Zhu, Arash Nazeri, Christopher Pham Pacia, Yimei Yue, Hong Chen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0198468

Eliciting improved quantitative judgements using the IDEA protocol: A case study in natural resource management
Cited by: 81
Author(s): Victoria Hemming, Terry Walshe, Anca M. Hanea, Fiona Fidler, Mark A. Burgman
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12877-020-01850-y

Cross-sectoral inter-rater reliability of the clinical frailty scale – a Danish translation and validation study
Cited by: 23
Author(s): Søren Kabell Nissen, Anders Vestergaard Fournaise, Jørgen Lauridsen, Jesper Ryg, Christian H. Nickel, Claire Gudex, Mikkel Brabrand, Karen Andersen‐Ranberg
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0233573

Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae)
Cited by: 10
Author(s): Daniele Salvi, Emanuele Berrilli, Paola D’Alessandro, Maurizio Biondi
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-017-4283-4

Phylogenetic and recombination analysis of the herpesvirus genus varicellovirus
Cited by: 26
Author(s): Aaron W. Kolb, Andrew C. Lewin, Ralph Trane, Gillian J. McLellan, Curtis R. Brandt
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01053-16

Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule
Cited by: 45
Author(s): Chrispin Chaguza, Cheryl P. Andam, Simon R. Harris, Jennifer Cornick, Marie Yang, Laura Bricio-Moreno, Arox W Kamng’ona, Julian Parkhill, Neil French, Robert S. Heyderman, Aras Kadioglu, Dean Everett, Stephen D. Bentley, William P. Hanage
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0251625

Effects of experimental warming on Betula nana epidermal cell growth tested over its maximum climatological growth range
Cited by: 4
Author(s): Fabian E.Z. Ercan, Juha Mikola, Tarja Silfver, Kristiina Myller, Elina Vainio, Sandra Słowińska, Michael Słowiński, Mariusz Lamentowicz, Daan Blok, Friederike Wagner-Cremer
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-015-2155-3

High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora
Cited by: 36
Author(s): Zhiqiang Wu, James D. Stone, Helena Štorchová, Daniel B. Sloan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0213293

Potential role of weather, soil and plant microbial communities in rapid decline of apple trees
Cited by: 22
Author(s): Jugpreet Singh, Katchen Julliany Pereira Silva, Marc Fuchs, Awais Khan
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02311-16

Nonselective Bottlenecks Control the Divergence and Diversification of Phase-Variable Bacterial Populations
Cited by: 13
Author(s): Jack Aidley, Shweta Rajopadhye, Nwanekka M. Akinyemi, Lea Lango-Scholey, Michael A. Jones, Christopher D. Bayliss
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0137139

Exploring a Tomato Landraces Collection for Fruit-Related Traits by the Aid of a High-Throughput Genomic Platform
Cited by: 71
Author(s): Adriana Sacco, Valentino Ruggieri, Mario Parisi, Giovanna Festa, Maria Manuela Rigano, Maurizio Enea Picarella, Andrea Mazzucato, Amalia Barone
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0188152

Regional brain morphometry in patients with traumatic brain injury based on acute- and chronic-phase magnetic resonance imaging
Cited by: 24
Author(s): Christian Ledig, Konstantinos Kamnitsas, Juha Koikkalainen, Jussi P. Posti, Riikka Takala, Ari Katila, Janek Frantzén, Henna Ala-Seppälä, Anna Kyllönen, Henna-Riikka Maanpää, Jussi Tallus, Jyrki Lötjönen, Ben Glocker, Olli Tenovuo, Daniel Rueckert
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0165562

Complex within a Complex: Integrative Taxonomy Reveals Hidden Diversity in Cicadetta brevipennis (Hemiptera: Cicadidae) and Unexpected Relationships with a Song Divergent Relative
Cited by: 10
Author(s): Thomas Hertach, Stéphane Puissant, Matija Gogala, Tomi Trilar, Reto Hagmann, Hannes Baur, Gernot Kunz, Elizabeth J. Wade, Simon P. Loader, Chris Simon, Peter Nagel
Software Mentions: 1
Published: over 9 years ago

10.1186/s13018-021-02468-5

Neohesperidin promotes the osteogenic differentiation of bone mesenchymal stem cells by activating the Wnt/β-catenin signaling pathway
Cited by: 5
Author(s): Yue-wen Chang, Wenjun Zhu, Wei Gu, Jun Sun, Zhiqiang Li, Xiaoen Wei
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.02716-18

The Polar Organizing Protein PopZ Is Fundamental for Proper Cell Division and Segregation of Cellular Content in Magnetospirillum gryphiswaldense
Cited by: 16
Author(s): Daniel Pfeiffer, Mauricio Toro-Nahuelpan, Marc Bramkamp, Jürgen M. Plitzko, Dirk Schüler
Software Mentions: 1
Published: about 7 years ago

10.1186/s13018-018-1019-3

Transcriptome analyses identify key genes and potential mechanisms in a rat model of osteoarthritis
Cited by: 10
Author(s): Huizi Li, Huading Lu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13018-018-0961-4

Chemokine analysis as a novel diagnostic modality in the early prediction of the outcome of non-union therapy: a matched pair analysis
Cited by: 2
Author(s): Patrick Haubruck, Anja Solte, Raban Arved Heller, Volker Daniel, Michael C. Tanner, Arash Moghaddam, Gerhard Schmidmaier, Christian Fischer
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-6355-0

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos
Cited by: 46
Author(s): Christopher J. Troll, Joshua D. Kapp, Varsha Rao, Kelly M. Harkins, Charles N. Cole, Colin Naughton, Joe P. Morgan, Beth Shapiro, Edward Green
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01224-19

Investigation of Genetic Susceptibility to Blastomycosis Reveals Interleukin-6 as a Potential Susceptibility Locus
Cited by: 30
Author(s): Richard M. Merkhofer, Mary O’Neill, Donny Xiong, Nydiaris Hernández-Santos, Hannah E. Dobson, J. Scott Fites, Abigail C. Shockey, Marcel Wuethrich, Caitlin S. Pepperell, Bruce S. Klein
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0223018

A large-scale chromosomal inversion is not associated with life history development in rainbow trout from Southeast Alaska
Cited by: 13
Author(s): Spencer Y. Weinstein, Frank P. Thrower, Krista M. Nichols, Matthew C. Hale
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0072830

Ecological Complexity of Coral Recruitment Processes: Effects of Invertebrate Herbivores on Coral Recruitment and Growth Depends Upon Substratum Properties and Coral Species
Cited by: 34
Author(s): Sarah W. Davies, Mikhail V. Matz, Peter D. Vize
Software Mentions: 1
Published: almost 13 years ago

10.1128/mBio.01678-19

A Protein Antagonist of Activation-Induced Cytidine Deaminase Encoded by a Complex Mouse Retrovirus
Cited by: 8
Author(s): Gurvani B. Singh, Hyewon Byun, Almas F. Ali, Frank Medina, Dennis Wylie, Haridha Shivram, Andrea K. Nash, Mary M. Lozano, Jaquelin P. Dudley
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01516-19

Hydrodynamic Shape Changes Underpin Nuclear Rerouting in Branched Hyphae of an Oomycete Pathogen
Cited by: 5
Author(s): Édouard Evangelisti, Liron Shenhav, T. S. Yunusov, Marie Le Naour—Vernet, Philipp Rink, Sebastián Schornack
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02321-19

Identification of Key Determinants of Staphylococcus aureus Vaginal Colonization
Cited by: 28
Author(s): Liwen Deng, Katrin Schilcher, Lindsey R. Burcham, Jakub Kwieciński, Paige Johnson, Steven R. Head, David E. Heinrichs, Alexander R. Horswill, Kelly S. Doran
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0091805

Tissue Specific DNA Methylation in Normal Human Breast Epithelium and in Breast Cancer
Cited by: 23
Author(s): Avraham Abergel, Soonweng Cho, Ronit Uhlmann, Mia Leonov Polak, Judith Sandbank, Tami Karni, Itzhak Pappo, Ruvit Halperin, Zvi Vaknin, Avishay Sella, Saraswati Sukumar, Ella Evron
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.03243-19

Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults
Cited by: 46
Author(s): Philip Meade, Guillermina Kuan, Shirin Strohmeier, Hannah E. Maier, Fatima Amanat, Ángel Balmaseda, Kimihito Ito, Ericka Kirkpatrick, Andres Javier, Lionel Gresh, Raffael Nachbagauer, Aubree Gordon, Florian Krammer
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0238616

The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation
Cited by: 28
Author(s): Rafał Zdrzałek, Sophien Kamoun, Ryohei Terauchi, Hiromasa Saitoh, Mark J. Banfield
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0215563

Quality of postoperative pain management in Ethiopia: A prospective longitudinal study
Cited by: 30
Author(s): Million Tesfaye Eshete, Petra I. Baeumler, Matthias Siebeck, Markos Tesfaye, Abraham Haileamlak, Girma G. Michael, Yemane Ayele, Dominik Irnich
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0240486

Potential application of Pseudomonas stutzeri W228 for removal of copper and lead from marine environments
Cited by: 7
Author(s): Carolina Coelho da Costa Waite, Guilherme Oliveira Andrade da Silva, José Augusto Pires Bitencourt, Luciana Pereira Torres Chequer, Simone Pennafirme, Diogo Jurelevicius, Lucy Seldin, Mírian Araújo Carlos Crapez
Software Mentions: 1
Published: over 5 years ago

10.1186/s41687-020-00247-0

Quality of life among patients seeking treatment for substance use disorder, as measured with the EQ-5D-3L
Cited by: 8
Author(s): Kim Rand‐Hendriksen, Espen Ajo Arnevik, Espen Walderhaug
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07779-9

Amino acid transporter (AAT) gene family in foxtail millet (Setaria italica L.): widespread family expansion, functional differentiation, roles in quality formation and response to abiotic stresses
Cited by: 8
Author(s): Yang Yang, Yongmao Chai, Jiayi Liu, Jie Zheng, Zhangchen Zhao, Aduragbemi Amo, Chunge Cui, Qiumei Lu, Liang Chen, Yin‐Gang Hu
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0108651

Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences
Cited by: 146
Author(s): Mikko Pentinsaari, Paul D. N. Hebert, Marko Mutanen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0004315

Surveillance and Control of Aedes albopictus in the Swiss-Italian Border Region: Differences in Egg Densities between Intervention and Non-intervention Areas
Cited by: 22
Author(s): Tobias Suter, Eleonora Flacio, Begoña Feijoó Fariña, Lukas Engeler, Mauro Tonolla, Lêda Regis, Maria Angélica Borges dos Santos, Pie Müller
Software Mentions: 1
Published: over 10 years ago

10.1111/jfd.13361

Effect of water temperature on the morbidity of Tetracapsuloides bryosalmonae (Myxozoa) to brown trout (Salmo trutta) under laboratory conditions
Cited by: 7
Author(s): Karoline Waldner, Martin Borkovec, Florian Borgwardt, Günther Unfer, Mansour El-Matbouli
Software Mentions: 1
Published: over 5 years ago

10.1002/ijc.31063

Histological subtypes of ovarian cancer associated with parity and breastfeeding in the prospective Million Women Study
Cited by: 44
Author(s): Kezia Gaitskell, Jane Green, Kirstin Pirie, Isobel Barnes, C Hermon, Gillian Reeves, Valerie Beral
Software Mentions: 1
Published: over 8 years ago

10.1007/s10554-015-0659-1

Defining the real-world reproducibility of visual grading of left ventricular function and visual estimation of left ventricular ejection fraction: impact of image quality, experience and accreditation
Cited by: 55
Author(s): Graham D. Cole, Niti M. Dhutia, Matthew Shun-Shin, Keith Willson, James Harrison, Claire E. Raphael, Massoud Zolgharni, Jamil Mayet, Dárrel P. Francis
Software Mentions: 1
Published: almost 11 years ago

10.1155/2019/9151394

Inhibition of TGF-β1 Signaling by IL-15: A Novel Role for IL-15 in the Control of Renal Epithelial-Mesenchymal Transition: IL-15 Counteracts TGF-β1-Induced EMT in Renal Fibrosis
Cited by: 16
Author(s): Aurore Devocelle, Lola Lecru, H. François, Christophe Desterke, Cindy Gallerne, Pierre Eid, Estelle Oberlin, Bruno Azzarone, Julien Giron‐Michel
Software Mentions: 1
Published: almost 7 years ago

10.5005/jp-journals-10005-1470

Conscious Sedation with Nitrous Oxide to control Stress during Dental Treatment in Patients with Cerebral Palsy: An Experimental Clinical Trial
Cited by: 7
Author(s): Fernando Martins Baeder, Daniel F. Silva, Ana Cl de Albuquerque, Maria Tbr Santos
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0004425

Exposure versus Susceptibility as Alternative Bases for New Approaches to Surveillance for Schistosoma japonicum in Low Transmission Environments
Cited by: 5
Author(s): Shuo Wang, Robert C. Spear
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0006607

Evaluation of the rSP03B sero-strip, a newly proposed rapid test for canine exposure to Phlebotomus perniciosus, vector of Leishmania infantum
Cited by: 9
Author(s): Laura Willen, Pascal Mertens, Petr Volf
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pntd.0007832

Field study of the improved rapid sand fly exposure test in areas endemic for canine leishmaniasis
Cited by: 8
Author(s): Laura Willen, Tereza Leštinová, Barbora Kalousková, Petra Sumová, Tatiana Spitzová, Rita Velez, E. Domenech, Ondřej Vaněk, Montserrat Gállego, Pascal Mertens, Petr Volf
Software Mentions: 1
Published: over 6 years ago

10.1186/s13047-015-0074-9

Let me Google that for you: a time series analysis of seasonality in internet search trends for terms related to foot and ankle pain
Cited by: 37
Author(s): Scott Telfer, James Woodburn
Software Mentions: 1
Published: almost 11 years ago

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