cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0170647

Increased Gamma Brainwave Amplitude Compared to Control in Three Different Meditation Traditions
Cited by: 99
Author(s): Claire Braboszcz, B. Rael Cahn, Jonathan Lévy, M. Fernàndez, Arnaud Delorme
Software Mentions: 1
Published: over 9 years ago

10.1007/s00259-021-05266-7

Equivalent tumor detection for early and late FAPI-46 PET acquisition
Cited by: 28
Author(s): Justin Ferdinandus, Lukas Kessler, Nader Hirmas, Marija Trajkovic‐Arsic, Rainer Hamacher, Lale Umutlu, Michael Nader, Fadi Zarrad, Manuel Weber, Wolfgang P. Fendler
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02852

Increasing Prevalence of ESBL-Producing Multidrug Resistance Escherichia coli From Diseased Pets in Beijing, China From 2012 to 2017
Cited by: 41
Author(s): Yanyun Chen, Zhihai Liu, Yaru Zhang, Zhenbiao Zhang, Lei Lei, Zhaofei Xia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0237178

Entanglement rates and haulout abundance trends of Steller (Eumetopias jubatus) and California (Zalophus californianus) sea lions on the north coast of Washington state
Cited by: 6
Author(s): Elizabeth Marina Allyn, Jonathan J. Scordino
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0159518

High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
Cited by: 23
Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: about 10 years ago

10.3762/bjoc.16.248

Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities
Cited by: 15
Author(s): Heiko T. Kiesewalter, Carlos N. Lozano-Andrade, Mikael Lenz Strube, Ákos T. Kovács
Software Mentions: 1
Published: over 5 years ago

10.1007/s00259-019-04305-8

Cross-interaction of tau PET tracers with monoamine oxidase B: evidence from in silico modelling and in vivo imaging
Cited by: 65
Author(s): N. Murugan, Konstantinos Chiotis, Elena Rodriguez‐Vieitez, Laëtitia Lemoine, Hans Ågren, Agneta Nordberg
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.00682-20

Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena
Cited by: 21
Author(s): Dong Zhang, Fang You, Yiliang He, Shu Harn Te, Karina Yew‐Hoong Gin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0139663

Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines
Cited by: 17
Author(s): Haiping Dai, Stefan Ehrentraut, Stefan Nagel, Sonja Eberth, Claudia Pommerenke, Wilhelm G. Dirks, Robert Geffers, Srilaxmi Kalavalapalli, Maren Kaufmann, Corrina Meyer, Silke Faehnrich, Suning Chen, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: over 10 years ago

10.3389/fnana.2020.605029

Altered White Matter and Layer VIb Neurons in Heterozygous Disc1 Mutant, a Mouse Model of Schizophrenia
Cited by: 2
Author(s): Shin-Hwa Tsai, Chih-Yu Tsao, Li-Jen Lee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0089428

Increased Prolactin Levels Are Associated with Impaired Processing Speed in Subjects with Early Psychosis
Cited by: 32
Author(s): Itziar Montalvo, Alfonso Gutiérrez-Zotes, Marta Creus, Rosa Monseny, Laura Ortega, J. Franch, Stephen M. Lawrie, Rebecca M. Reynolds, Elisabet Vilella, Javier Labad
Software Mentions: 1
Published: over 12 years ago

10.1186/s12859-021-04034-6

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants
Cited by: 180
Author(s): Sebastian M. Siegner, Mehmet E. Karasu, Markus S. Schröder, Zacharias Kontarakis, Jacob E. Corn
Software Mentions: 1
Published: over 5 years ago

10.1136/bmjophth-2019-000404

Macular hole morphology and measurement using an automated three-dimensional image segmentation algorithm
Cited by: 12
Author(s): Yunzi Chen, Amar Vijai Nasrulloh, I. J. Wilson, Caspar Geenen, Maged Habib, Bogusław Obara, David Steel
Software Mentions: 1
Published: about 6 years ago

10.1038/ismej.2017.88

Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells
Cited by: 25
Author(s): Robert W. Read, Paul M. Berube, Steven J. Biller, Iva Neveux, Andrés Cubillos-Ruiz, Sallie W. Chisholm, Joseph J. Grzymski
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.01001

Genome Analysis of Coxsackievirus A4 Isolates From Hand, Foot, and Mouth Disease Cases in Shandong, China
Cited by: 11
Author(s): Min Wang, Juan Li, Mingxiao Yao, Yawei Zhang, Tao Hu, Michael J. Carr, Sebastián Duchêne, Xing-Cheng Zhang, Zhenjie Zhang, Hong Zhou, Yigang Tong, Shujun Ding, Xianjun Wang, Weifeng Shi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0137640

Deciphering Seed Sequence Based Off-Target Effects in a Large-Scale RNAi Reporter Screen for E-Cadherin Expression
Cited by: 8
Author(s): Robert A. Adams, Barbara Nicke, Hans‐Dieter Pohlenz, Florian Sohler
Software Mentions: 1
Published: almost 11 years ago

10.1002/ece3.3908

Usnic acid, as a biotic factor, changes the ploidy level in mosses
Cited by: 14
Author(s): Michal Goga, Dajana Ručová, Vladislav Kolarčik, Marko S. Sabovljević, Martin Bačkor, Ingeborg Lang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0155143

Impaired Bile Acid Homeostasis in Children with Severe Acute Malnutrition
Cited by: 18
Author(s): Ling Zhang, Wieger Voskuijl, Marialena Mouzaki, Albert K. Groen, J. J. Alexander, Céline Bourdon, Alice Wang, Christian J. Versloot, Valeria Di Giovanni, Ronald J. A. Wanders, Robert Bandsma
Software Mentions: 1
Published: over 10 years ago

10.1093/aobpla/plx054

Low temperature limits for root growth in alpine species are set by cell differentiation
Cited by: 23
Author(s): Sebastian Nagelmüller, Erika Hiltbrunner, Christian Körner
Software Mentions: 1
Published: almost 9 years ago

10.1093/gigascience/giy015

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Cited by: 47
Author(s): Harry A. Thorpe, Sion C. Bayliss, Samuel K. Sheppard, Edward J. Feil
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0192117

The number of repeated observations needed to estimate the habitual physical activity of an individual to a given level of precision
Cited by: 25
Author(s): Patrick Bergman
Software Mentions: 1
Published: over 8 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: over 8 years ago

10.3390/ani11030786

Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus opercularis)
Cited by: 4
Author(s): Anita Rácz, Gábor Adorján, Erika Fodor, Boglárka Sellyei, Mohammed Essa Marghany Tolba, Ádám Miklósi, Máté Varga
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-71687-3

Comparing the tractability of young hand-raised wolves (Canis lupus) and dogs (Canis familiaris)
Cited by: 10
Author(s): Dorottya Júlia Ujfalussy, Zsófia Virányi, Márta Gácsi, Tamás Faragó, Ákos Pogány, Boróka Mária Bereczky, Ádám Miklósi, Enikő Kubinyi
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.3738

Feather mite abundance varies but symbiotic nature of mite‐host relationship does not differ between two ecologically dissimilar warblers
Cited by: 10
Author(s): Alix E. Matthews, Jeffery L. Larkin, Douglas W. Raybuck, Morgan C. Slevin, Scott H. Stoleson, Than J. Boves
Software Mentions: 1
Published: over 8 years ago

10.1136/bmjopen-2020-044707

Use of routine death and illness surveillance data to provide insight for UK pandemic planning: lessons from COVID-19
Cited by: 3
Author(s): Helen Clough, K. Marie McIntyre, Grace Patterson, Jonathan Harris, Jonathan Rushton
Software Mentions: 1
Published: over 5 years ago

10.1136/bmjopen-2017-016866

Effect of weekend admission on process of care and clinical outcomes for the management of acute coronary syndromes: a retrospective analysis of three UK centres
Cited by: 13
Author(s): Glen P. Martin, Tim Kinnaird, Matthew Sperrin, Richard Anderson, Amr Gamal, Avais Jabbar, Chun Shing Kwok, Diane Barker, Grant Heatlie, Azfar Zaman, Mamas A. Mamas
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0192277

Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis
Cited by: 14
Author(s): Raees Khan, Nazish Roy, Kihyuck Choi, Seon-Woo Lee
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-71775-4

High MHC-II expression in Epstein–Barr virus-associated gastric cancers suggests that tumor cells serve an important role in antigen presentation
Cited by: 21
Author(s): Farhad Ghasemi, Tanner M. Tessier, Steven F. Gameiro, Allison H. Maciver, Matthew J. Cecchini, Joe S. Mymryk
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2017.01744

Efficacy Testing of H56 cDNA Tattoo Immunization against Tuberculosis in a Mouse Model
Cited by: 5
Author(s): Anouk C.M. Platteel, Natalie E. Nieuwenhuizen, Teresa Domaszewska, Stefanie Schürer, Ulrike Zedler, Volker Brinkmann, Alice J.A.M. Sijts, Stefan H. E. Kaufmann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0156147

Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea)
Cited by: 8
Author(s): Peeter Laas, Elina Šatova, Inga Lips, Urmas Lips, Jaak Simm, Veljo Kisand, Madis Metsis
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-71972-1

Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing
Cited by: 13
Author(s): Feng Li, Akira Komatsu, Miki Ohtake, Heesoo Eun, Akifumi Shimizu, Hiroshi Katô
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0185972

Assessing climate change-robustness of protected area management plans—The case of Germany
Cited by: 6
Author(s): Juliane Geyer, Stefan Kreft, Florian Jeltsch, Pierre L. Ibisch
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0156926

Universal HbA1c Measurement in Early Pregnancy to Detect Type 2 Diabetes Reduces Ethnic Disparities in Antenatal Diabetes Screening: A Population-Based Observational Study
Cited by: 13
Author(s): Ruth Hughes, Jonathan Williman, Joanna Gullam
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.5206

Interactions between ecological factors in the developmental environment modulate pupal and adult traits in a polyphagous fly
Cited by: 22
Author(s): Binh Nguyen, Fleur Ponton, Anh The Than, Phillip W. Taylor, Toni A. Chapman, Juliano Morimoto
Software Mentions: 1
Published: over 7 years ago

10.1136/bmjgh-2018-000955

Sources of social support and sexual behaviour advice for young adults in rural South Africa
Cited by: 12
Author(s): Guy Harling, Dumile Gumede, Maryam Shahmanesh, Deenan Pillay, Till Bärnighausen, Frank Tanser
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0186433

Integrated mRNA and microRNA transcriptome analyses reveal regulation of thermal acclimation in Gymnocypris przewalskii: A case study in Tibetan Schizothoracine fish
Cited by: 14
Author(s): Cunfang Zhang, Chao Tong, Fei Tian, Kai Zhao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-72080-w

Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing
Cited by: 6
Author(s): Swapnil Vilas Bhujbal, Maren Dekov, Vegar Ottesen, Karen Dunker, Rahmi Lale, Marit Sletmoen
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52770

Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway
Cited by: 13
Author(s): Jernej Turnšek, John K. Brunson, Maria del Pilar Martinez Viedma, Thomas J. Deerinck, Aleš Horák, Miroslav Oborník, Vincent A. Bielinski, Andrew E. Allen
Software Mentions: 1
Published: over 5 years ago

10.1136/bmjgh-2021-005512

Can health information through mobile phones close the divide in health behaviours among the marginalised? An equity analysis of Kilkari in Madhya Pradesh, India
Cited by: 11
Author(s): Diwakar Mohan, Kerry Scott, Neha Shah, Jean Juste Harrisson Bashingwa, Arpita Chakraborty, Osama Ummer, Anna Godfrey, Priyanka Dutt, Sara Chamberlain, Amnesty LeFevre
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-72191-4

Characterization of raffinose metabolism genes uncovers a wild Arachis galactinol synthase conferring tolerance to abiotic stresses
Cited by: 32
Author(s): C. C. Vinson, Ana Paula Zotta Mota, Brenda Neves Porto, Thais Nicolini Oliveira, Iracyara Sampaio, A. L. M. Lacerda, Étienne Danchin, P. M. Guimarães, Thomas Christopher Rhys Williams, Ana Cristina Miranda Brasileiro
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.6493

Robust age estimation of southern sea otters from multiple morphometrics
Cited by: 6
Author(s): Teri E. Nicholson, Karl A. Mayer, Michelle M. Staedler, Tyler Gagne, Michael J. Murray, Marissa Young, Joseph A. Tomoleoni, M. Tim Tinker, Kyle S. Van Houtan
Software Mentions: 1
Published: about 6 years ago

10.1136/bmjgh-2019-002187

Patient pathways of tuberculosis care-seeking and treatment: an individual-level analysis of National Health Insurance data in Taiwan
Cited by: 10
Author(s): Chu-Chang Ku, Chien‐Chou Chen, Simon Dixon, Hsien Ho Lin, Peter J. Dodd
Software Mentions: 1
Published: about 6 years ago

10.1136/bmjgh-2019-001755

The inverse relationship between national food security and annual cholera incidence: a 30-country analysis
Cited by: 8
Author(s): Aaron Richterman, Andrew S. Azman, Georgery Constant, Louise C Ivers
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnut.2021.680391

QTL Mapping for Grain Zinc and Iron Concentrations in Bread Wheat
Cited by: 12
Author(s): Yue Wang, Xiaoting Xu, Yuanfeng Hao, Yelun Zhang, Yuping Liu, Zhien Pu, Yubing Tian, Dengan Xu, Xianchun Xia, Zhonghu He, Yong Zhang
Software Mentions: 1
Published: about 5 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02547

Phenotypic Analysis of Human Lymph Nodes in Subjects With New-Onset Type 1 Diabetes and Healthy Individuals by Flow Cytometry
Cited by: 7
Author(s): Jennie H.M. Yang, Leena Khatri, Marius Mickunas, Evangelia Williams, Danijela Tatović, Mohammad Alhadj Ali, Philippa Young, Penelope Moyle, Vishal Sahni, Ryan Wang, Rejbinder Kaur, Gillian M. Tannahill, Andrew R Beaton, Daniëlle M. Gerlag, Caroline . S. Savage, Antonella Napolitano Rosen, Frank Waldron‐Lynch, Colin Dayan, Timothy Tree
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-71952-5

Neural correlates of mindful emotion regulation in high and low ruminators
Cited by: 9
Author(s): David Rosenbaum, Agnes Kroczek, Justin Hudak, Julian Rubel, Moritz J. Maier, Theresa Sorg, Lucca Weisbender, Lara Goldau, Douglas S. Mennin, David M. Fresco, Andreas J. Fallgatter, Ann‐Christine Ehlis
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008119

Ten simple rules to increase computational skills among biologists with Code Clubs
Cited by: 5
Author(s): Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara Rifkin, Joshua M. A. Stough, Kelly L Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoğlu, Patrick D. Schloss
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1006468

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor
Cited by: 10
Author(s): Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain
Software Mentions: 1
Published: almost 8 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
Cited by: 13
Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: over 9 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1003638

Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
Cited by: 117
Author(s): Dražen Petrov, Bojan Žagrović
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1006360

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.23382

Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth
Cited by: 49
Author(s): Kashyap Dave, Inderpreet Sur, Jian Yan, Jilin Zhang, Eevi Kaasinen, Fan Zhong, Leander Blaas, Xiaoze Li, Shabnam Kharazi, Charlotte Gustafsson, Annick De Paepe, Robert Månsson, Jussi Taipale
Software Mentions: 1
Published: about 9 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: over 9 years ago

10.1136/bmj.h4708

Frequency of discrepancies in retracted clinical trial reports versus unretracted reports: blinded case-control study
Cited by: 9
Author(s): Graham D. Cole, Alexandra N. Nowbar, Michael Mielewczik, Matthew Shun-Shin, Dárrel P. Francis
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pcbi.1004890

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Cited by: 29
Author(s): David Noren, Byron L. Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, О. А. Степанов, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1006991

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Cited by: 16
Author(s): Lu Li, Massimo Lai, S P Cole, Nicolas Le Novère, Stuart J. Edelstein
Software Mentions: 1
Published: over 6 years ago

10.1017/gheg.2020.3

The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria
Cited by: 7
Author(s): Segun Fatumo, ThankGod Echezona Ebenezer, Chinwe Ekenna, Itunuoluwa Isewon, Umar Ahmad, Charles Oluwaseun Adetunji, Elijah Kolawole Oladipo, Marion O. Adebiyi, Ezekiel Adebiyi, Oyekanmi Nashiru, Nigerian Bioinformatics
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.00783

PD-1 Dynamically Regulates Inflammation and Development of Brain-Resident Memory CD8 T Cells During Persistent Viral Encephalitis
Cited by: 31
Author(s): .. Shwetank, Elizabeth Frost, Taryn E Mockus, Heather M. Ren, Mesut Toprak, Matthew D Lauver, Colleen S. Netherby, Ge Jin, Jennifer M. Cosby, Brian D Evavold, Aron E. Lukacher
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1004723

Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Cited by: 33
Author(s): Davi R. Ortega, Igor B. Zhulin
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.59540

A gradient of Wnt activity positions the neurosensory domains of the inner ear
Cited by: 9
Author(s): Magdalena Żak, Nicolas Daudet
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.58662

Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins
Cited by: 32
Author(s): Chanjae Lee, Rachael M. Cox, Ophelia Papoulas, Amjad Horani, Kevin Drew, Caitlin C. Devitt, Steven L. Brody, Edward M. Marcotte, John B. Wallingford
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006099

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
Cited by: 33
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Danai Koutra, Patrick D. Schloss
Software Mentions: 1
Published: over 8 years ago

10.1136/gutjnl-2017-315631

Single-cell RNAseq reveals seven classes of colonic sensory neuron
Cited by: 181
Author(s): James R.F. Hockley, Toni S Taylor, Gerard Callejo, Anna Wilbrey, Alex Gutteridge, Karsten Bach, Wendy J. Winchester, D Bulmer, Gordon McMurray, Ewan St. John Smith
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.738123

Characterising the Phenotypic Diversity of Antigen-Specific Memory B Cells Before and After Vaccination
Cited by: 6
Author(s): M. Christian Tjiam, Sonia Fernández, Martyn A. French
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.2007044

CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.03008

Heme Drives Susceptibility of Glomerular Endothelium to Complement Overactivation Due to Inefficient Upregulation of Heme Oxygenase-1
Cited by: 30
Author(s): Olivier May, Nicolas S. Merle, Anne Grünenwald, Viviane Gnemmi, Juliette Léon, Christine Payet, Tania Robe-Rybkine, Romain Paule, Florian Delguste, Simon C. Satchell, Peter W. Mathieson, Marc Hazzan, Éric Boulanger, Jordan D. Dimitrov, Véronique Frémeaux‐Bacchi, Marie Frimat, Lubka T. Roumenina
Software Mentions: 1
Published: over 7 years ago

10.1590/s0102-865020200050000008

Differences in lipidomics may be potential biomarkers for early diagnosis of pancreatic cancer
Cited by: 8
Author(s): Dehua Zhou, Di Mu, Ming Cheng, Yuting Dou, Xianwei Zhang, Zhensheng Feng, Guangyu Qiu, Hua Yu, Yang Chen, Hong Xu, Jian Sun, Ling Zhou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000632

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-72693-1

Bayesian approach for maize yield response to plant density from both agronomic and economic viewpoints in North America
Cited by: 4
Author(s): Josefina Lacasa, Adam P. Gaspar, M. Hinds, Sampath Jayasinghege Don, Dan Berning, Ignacio A. Ciampitti
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.1002555

Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pbio.2005189

Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pbio.1002452

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: over 10 years ago

10.1186/s12917-020-2273-2

TeamMate: a longitudinal study of New Zealand working farm dogs. I. Methods, population characteristics and health on enrolment
Cited by: 4
Author(s): Katja Elisabeth Isaksen, Lori Linney, Helen Williamson, Nick Cave, Ngaio J. Beausoleil, Norman Espinosa, Naomi Cogger
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/7724997

Identification of Ferroptosis-Related Long Noncoding RNA and Construction of a Novel Prognostic Signature for Gastric Cancer
Cited by: 14
Author(s): Wen-Zheng Chen, Zongfeng Feng, Jianfeng Huang, Pengcheng Fu, Jianbo Xiong, Yi Cao, Yi Liu, Yi Tu, ZhengRong Li, Zhigang Jie, Tao Xiao
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.103837

IGF2 loss of imprinting enhances colorectal cancer stem cells pluripotency by promoting tumor autophagy
Cited by: 10
Author(s): Tianyi Gao, Xiangxiang Liu, Bangshun He, Yuqin Pan, Shukui Wang
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani10111953

Integrative Analysis of Energy Partition Patterns and Plasma Metabolomics Profiles of Modern Growing Pigs Raised at Different Ambient Temperatures
Cited by: 6
Author(s): Shuai Zhang, Hang Gao, Xiongkun Yuan, Junjun Wang, Jianjun Zang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fneur.2020.00475

Brain Proteomic Profiling in Intractable Epilepsy Caused by TSC1 Truncating Mutations: A Small Sample Study
Cited by: 5
Author(s): Yidan Liu, Mengyu Ma, Xi-Bin Hu, Yan Huan, Yan-Ke Zhang, Hao-Xiang Yang, Jinghui Feng, Lin Wang, Hao Zhang, Bin Zhang, Qiubo Li, Jun-Chen Zhang, Qingxia Kong
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.02447

Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments
Cited by: 21
Author(s): Mie Bech Lukassen, Nadieh de Jonge, Sabine M Bjerregaard, Raju Podduturi, Niels O. G. Jørgensen, Mikael Agerlin Petersen, Gianmarco Silva David, Reinaldo José Silva, Jeppe Lund Nielsen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12879-019-4093-1

In vitro activities of Eravacycline against 336 isolates collected from 2012 to 2016 from 11 teaching hospitals in China
Cited by: 15
Author(s): Chunjiang Zhao, Xiaojuan Wang, Yawei Zhang, Ruobing Wang, Qi Wang, Henan Li, Hui Wang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12879-015-1072-z

Syphilis in the economic center of South China: results from a real-time, web-based surveillance program
Cited by: 8
Author(s): Wangjian Zhang, Zhicheng Du, Shaokai Tang, Pi Guo, Xingdong Ye
Software Mentions: 1
Published: about 11 years ago

10.3389/fimmu.2020.605170

Deep Sequencing of B Cell Receptor Repertoires From COVID-19 Patients Reveals Strong Convergent Immune Signatures
Cited by: 81
Author(s): Jacob D. Galson, Sebastian Schaetzle, Rachael Bashford-Rogers, Matthew I. J. Raybould, Aleksandr Kovaltsuk, Gavin J. Kilpatrick, Ralph Minter, Donna K. Finch, Jorge Amil Dias, Louisa K. James, Gavin Thomas, Wing-Yiu Jason Lee, Jason R. Betley, Olivia Cavlan, Alex Leech, Charlotte Deane, Joan Seoane, Carlos Caldas, Daniel J. Pennington, Paul Pfeffer, Jane Osbourn
Software Mentions: 1
Published: over 5 years ago

10.1186/s13099-020-00371-8

Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter
Cited by: 28
Author(s): Rituparna De, Asish K. Mukhopadhyay, Shanta Dutta
Software Mentions: 1
Published: about 6 years ago

10.1186/s13099-021-00409-5

Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease
Cited by: 24
Author(s): Shijia Hu, Eileen Png, Michelle Gowans, David Ong, Paola Flórez de Sessions, Jié Song, Niranjan Nagarajan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000650

A pedagogical approach to science outreach
Cited by: 7
Author(s): Marni B. McClure, Kacey C. Hall, Erin F. Brooks, Catherine T. Allen, Kenneth S. Lyle
Software Mentions: 1
Published: over 6 years ago

10.1186/s13005-018-0174-4

Assessing the effect of multibracket appliance treatment on tooth color by using electronic measurement
Cited by: 2
Author(s): Anja Ratzmann, Ch. Schwahn, Anja Treichel, Andreas Faltermeier, Alexander Welk
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2020.01174

Extracellular Vesicles Derived From Trichinella spiralis Muscle Larvae Ameliorate TNBS-Induced Colitis in Mice
Cited by: 39
Author(s): Yong Yang, Lei Liu, Xiaolei Liu, Yuanyuan Zhang, Hailian Shi, Wan‐Zhong Jia, Hongfei Zhu, Hong Peng Jia, Mingyuan Liu, Xue Bai
Software Mentions: 1
Published: about 6 years ago

10.1002/eap.1903

Bio‐energetic modeling of medium‐sized cetaceans shows high sensitivity to disturbance in seasons of low resource supply
Cited by: 26
Author(s): Vincent Hin, John Harwood, André M. de Roos
Software Mentions: 1
Published: over 7 years ago

10.1186/s12955-018-0986-8

Valuing health-related quality of life: systematic variation in health perception
Cited by: 7
Author(s): Manuel B. Huber, Martin Vogelmann, Reiner Leidl
Software Mentions: 1
Published: about 8 years ago

10.1002/hsr2.393

Standalone sauna vs exercise followed by sauna on cardiovascular function in non‐naïve sauna users: A comparison of acute effects
Cited by: 3
Author(s): Earric Lee, Joel Kostensalo, Peter Willeit, Setor K Kunutsor, Tanjaniina Laukkanen, Francesco Zaccardi, Hassan Khan, Jari A Laukkanen
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.26889

A high-throughput screen of pharmacologically active compounds for inhibitors of UHRF1 reveals epigenetic activity of anthracycline derivative chemotherapeutic drugs
Cited by: 12
Author(s): Hugh Giovinazzo, David Walker, Nicolas Wyhs, Jianyong Liu, David Esopi, Ajay Vaghasia, Yash Jain, Akshay Bhamidipati, Jianya Zhou, William G. Nelson, Srinivasan Yegnasubramanian
Software Mentions: 1
Published: over 7 years ago

10.1007/s10198-015-0720-y

Economic evaluation in chronic pain: a systematic review and de novo flexible economic model
Cited by: 19
Author(s): W. Sullivan, Matthew Hirst, Stephen Beard, D. Gladwell, Francis Fagnani, Julio López Bastida, Ceri Phillips, W. Dunlop
Software Mentions: 1
Published: almost 11 years ago

10.3389/fimmu.2020.608696

Distinguishing Sepsis From Infection by Neutrophil Dysfunction: A Promising Role of CXCR2 Surface Level
Cited by: 14
Author(s): Chutima Seree-aphinan, Polathep Vichitkunakorn, Raphatphorn Navakanitworakul, Bodin Khwannimit
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2334-14-460

The frequency of tetracycline resistance genes co-detected with respiratory pathogens: a database mining study uncovering descriptive trends throughout the United States
Cited by: 1
Author(s): Matthew Huff, David Weisman, John S. Adams, Song Li, Jessica Green, Leslie Malone, Scott Clemmons
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.64674

Propensity for somatic expansion increases over the course of life in Huntington disease
Cited by: 28
Author(s): Radhia Kacher, François‐Xavier Lejeune, Sandrine Noël, Cécile Cazeneuve, Alexis Brice, Sandrine Humbert, Alexandra Dürr
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.584423

Tumor Infiltrating Effector Memory Antigen-Specific CD8+ T Cells Predict Response to Immune Checkpoint Therapy
Cited by: 37
Author(s): Nicola Principe, Joel Kidman, Siting Goh, Caitlin M. Tilsed, Scott Fisher, Vanessa S. Fear, Catherine A. Forbes, Rachael M. Zemek, Abha Chopra, Mark W. Watson, Ian M. Dick, Louis Boon, Robert A. Holt, Richard Lake, Anna K. Nowak, W. Joost Lesterhuis, Alison M. McDonnell, Jonathan Chee
Software Mentions: 1
Published: almost 6 years ago

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