cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2020.01168

Immune Network Modeling Predicts Specific Nasopharyngeal and Peripheral Immune Dysregulation in Otitis-Prone Children
Cited by: 1
Author(s): Matthew C. Morris, Timothy J. Chapman, Michael E. Pichichero, Gordon Broderick
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-015-1678-y

Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome
Cited by: 49
Author(s): Thomas Dugé de Bernonville, Emilien Foureau, Claire Parage, Arnaud Lanoue, Marc Clastre, Monica Arias Londono, Audrey Oudin, Benjamin Houillé, Nicolas Papon, Sébastien Besseau, Gaëlle Glévarec, Lucía Atehortúa, Nathalie Giglioli-Guivarc’h, Benoit St-Pierre, Vincenzo De Luca, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13068-019-1479-7

Genetic variation of biomass recalcitrance in a natural Salix viminalis (L.) population
Cited by: 16
Author(s): Jonas Ohlsson, Henrik R. Hallingbäck, Mohamed Jebrane, Anne E. Harman‐Ware, Todd Shollenberger, Stephen R. Decker, Mats Sandgren, Ann Christin Rönnberg‐Wästljung
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0190345

Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic
Cited by: 24
Author(s): Eneko Bachiller, Kjell Rong Utne, Teunis Jansen, Geir Huse
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.593589

How do Planktonic Particle Collection Methods Affect Bacterial Diversity Estimates and Community Composition in Oligo-, Meso- and Eutrophic Lakes?
Cited by: 9
Author(s): Guobo Xie, Xiangming Tang, Yi Gong, Kwang‐Tsao Shao, Guang Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-020-01757-1

Time-resolved multi-omics analysis reveals the role of nutrient stress-induced resource reallocation for TAG accumulation in oleaginous fungus Mortierella alpina
Cited by: 24
Author(s): Hengqian Lu, Haiqin Chen, Xin Tang, Qin Yang, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0101151

Miz-1 Activates Gene Expression via a Novel Consensus DNA Binding Motif
Cited by: 13
Author(s): Bonnie L. Barrilleaux, Dana Burow, Sarah H. Lockwood, Abigail Yu, David J. Segal, Paul S. Knoepfler
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2021.653189

A Rapid and Efficient Screening System for Neutralizing Antibodies and Its Application for SARS-CoV-2
Cited by: 19
Author(s): Xiaojian Han, Ying‐Ming Wang, Shenglong Li, Chao Hu, Tingting Li, Cheng Gu, Kai Wang, Meiying Shen, Jianwei Wang, Jie Hu, Ruixue Wu, Song Mu, Fang Gong, Qian Chen, Feng Gao, Jingjing Huang, Yingyi Long, Feiyang Luo, Shuyi Song, Shunhua Long, Yanan Hao, Li Luo, Yang Wu, Wei Xü, Xiujun Cai, Qi Gao, Guiji Zhang, Chaojun He, Kun Deng, Li Du, Yaru Nai, Wang Wang, Youhua Xie, Di Qu, Aiping Huang, Ni Tang, Aishun Jin
Software Mentions: 1
Published: about 5 years ago

10.3389/fped.2021.691599

Immunotherapies for Anti-N-M-methyl-D-aspartate Receptor Encephalitis: Multicenter Retrospective Pediatric Cohort Study in China
Cited by: 5
Author(s): Shiqi Guang, Jianjun Ma, Xiaotun Ren, Shuizhen Zhou, Jian Yang, Jianzhao Zhang, Xiaoshuang Cao, Linxiu Zhong, Xiao Ding, Xiaosu Wang, Changhong Ren, Weihua Zhang, Linmei Zhang, Min Zhang, Jing Sun, Miriam Kessi, Fei Yin, Jing Peng, Yuwu Jiang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41420-021-00487-z

Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells
Cited by: 21
Author(s): Xi Chen, Elisa Saccon, K. Sofia Appelberg, Flora Mikaeloff, Jimmy E Rodriguez, Beatriz Sá Vinhas, Teresa Frisan, Ákos Végvári, Alì Mirazimi, Ujjwal Neogi, Soham Gupta
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0227003

Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss)
Cited by: 15
Author(s): Bernat Morro, Mary K. Doherty, Pablo Balseiro, Sigurd O. Handeland, Simon Mackenzie, Harald Sveier, Amaya Albalat
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-019-1443-6

Effects of H2:CO2 ratio and H2 supply fluctuation on methane content and microbial community composition during in-situ biological biogas upgrading
Cited by: 67
Author(s): Radziah Wahid, Daniel Girma Mulat, John Christian Gaby, Svein Jarle Horn
Software Mentions: 1
Published: about 7 years ago

10.1038/srep01801

Quantifying Wikipedia Usage Patterns Before Stock Market Moves
Cited by: 234
Author(s): Helen Susannah Moat, Chester Curme, Adam Avakian, Dror Y. Kenett, H. Eugene Stanley, Tobias Preis
Software Mentions: 1
Published: about 13 years ago

10.3389/fped.2020.587730

Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life
Cited by: 7
Author(s): Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Stephanie Lo, Chinelo Ebruke, Rebecca A. Gladstone, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P. Klugman, Robert F. Breiman, Michael R. Barer, Richard A. Adegbola, Martín Antonio, Stephen D. Bentley, Brenda Kwambana-Adams
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-018-2170-x

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
Cited by: 7
Author(s): Tom Hartmann, Matthias Bernt, Martin Middendorf
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0187568

Computer simulation models as a tool to investigate the role of microRNAs in osteoarthritis
Cited by: 12
Author(s): Carole J. Proctor, Graham R. Smith
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0227250

Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici and the potential for rapid asexual evolution
Cited by: 13
Author(s): Jian Hu, Sandesh Shrestha, Yuxin Zhou, Joann Mudge, Xili Liu, Kurt Lamour
Software Mentions: 1
Published: over 6 years ago

10.1007/s00406-020-01229-5

Distress severity in perceptual anomalies moderates the relationship between prefrontal brain structure and psychosis proneness in nonclinical individuals
Cited by: 3
Author(s): Ulrika Evermann, Simon Schmitt, Tina Meller, Julia‐Katharina Pfarr, Sarah Grezellschak, Igor Nenadić
Software Mentions: 1
Published: over 5 years ago

10.1186/2193-1801-3-547

Genetic analysis of resistance to Pseudomonas syringae pv. actinidiae (Psa) in a kiwifruit progeny test: an application of generalised linear mixed models (GLMMs)
Cited by: 10
Author(s): Nihal H De Silva, L. D. Gea, R. G. Lowe
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10265

The anatomy of urban social networks and its implications in the searchability problem
Cited by: 34
Author(s): Carlos Herrera-Yagüe, Christian Schneider, Thomas Couronné, Zbigniew Smoreda, R. M. Benito, Pedro J. Zufiria, Marta C. González
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0233709

From nutrients to competition processes: Habitat specific threats to Arnica montana L. populations in Hesse, Germany
Cited by: 9
Author(s): Verena Hollmann, Tobias W. Donath, Florian Grammel, Tina Himmighofen, Ute Zerahn, Ilona Leyer
Software Mentions: 1
Published: about 6 years ago

10.1186/s13068-020-01770-4

Carbon migration and metagenomic characteristics during anaerobic digestion of rice straw
Cited by: 7
Author(s): Dadi Chen, Xiaoyu Zuo, Juan Li, Xitong Wang, Jie Liu
Software Mentions: 1
Published: almost 6 years ago

10.3390/bios11080286

In Vitro Anticancer Drug Sensitivity Sensing through Single-Cell Raman Spectroscopy
Cited by: 7
Author(s): Jingkai Wang, Kaicheng Lin, Huijie Hu, Xingwang Qie, Wei E. Huang, Zhisong Cui, Yan Gong, Yizhi Song
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-016-1250-z

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Cited by: 78
Author(s): Santhilal Subhash, Chandrasekhar Kanduri
Software Mentions: 1
Published: almost 10 years ago

10.3389/fphar.2020.601344

Largely Accelerated Arterial Aging in Rheumatoid Arthritis Is Associated With Inflammatory Activity and Smoking in the Early Stage of the Disease
Cited by: 9
Author(s): Nikolett Mong, Z Tarjanyi, László Tóthfalusi, Andrea Bartykowszki, Anikó Ilona Nagy, Anett Szekely, Dávid Becker, Pál Maurovich-Horvat, Béla Merkely, György Nagy
Software Mentions: 1
Published: over 5 years ago

10.1111/evj.12766

Quantification of the effect of instrumentation error in objective gait assessment in the horse on hindlimb symmetry parameters
Cited by: 14
Author(s): F. M. Serra Bragança, Marie Rhodin, Thomas Wiestner, Elin Hernlund, Thilo Pfau, P. R. van Weeren, Michael A Weishaupt
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.103465

Systems biology approach to exploring the effect of cyclic stretching on cardiac cell physiology
Cited by: 0
Author(s): Chien Cheng Chen, Tai‐Chee Wong, Tzu Yun Chin, Wen Hsien Lee, Chan Yen Kuo, Yi Chiung Hsu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13072-018-0221-1

Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c–Bmp7 locus
Cited by: 3
Author(s): Taro Tsujimura, Osamu Takase, Masahide Yoshikawa, Etsuko Sano, Matsuhiko Hayashi, Tsuyoshi Takato, Atsushi Toyoda, Hideyuki Okano, Keiichi Hishikawa
Software Mentions: 1
Published: almost 8 years ago

10.18632/aging.103509

Circadian clock is associated with tumor microenvironment in kidney renal clear cell carcinoma
Cited by: 20
Author(s): Liangcheng Zhou, Zundu Luo, Zuwei Li, Qinying Huang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0041162

FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing
Cited by: 62
Author(s): Isaac Kinde, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein
Software Mentions: 1
Published: almost 14 years ago

10.3389/fphar.2020.00620

Software Tools for Model-Informed Precision Dosing: How Well Do They Satisfy the Needs?
Cited by: 58
Author(s): Wannee Kantasiripitak, Ruth Van Daele, Matthias Gijsen, Marc Ferrante, Isabel Spriet, Erwin Dreesen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0167876

Susceptibility and Antibody Response of the Laboratory Model Zebra Finch (Taeniopygia guttata) to West Nile Virus
Cited by: 11
Author(s): Erik K. Hofmeister, Melissa Lund, Valerie I. Shearn-Bochsler, Christopher N. Balakrishnan
Software Mentions: 1
Published: over 9 years ago

10.3389/fphar.2019.00001

Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs
Cited by: 93
Author(s): Marianna Zolotovskaia, Maxim Sorokin, Anna A. Emelianova, Nicolas Borisov, Denis Kuzmin, Pieter Borger, Andrew Garazha, Anton Buzdin
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0153009

Sphingosine-1-Phosphate Lyase Deficient Cells as a Tool to Study Protein Lipid Interactions
Cited by: 36
Author(s): Mathias J. Gerl, Verena Bittl, Susanne Kirchner, Timo Sachsenheimer, Hanna L. Brunner, Christian Lüchtenborg, Cagakan Özbalci, Hannah Wiedemann, Sabine Wegehingel, Walter Nickel, Per Haberkant, Carsten Schultz, Marcus Krüger, Britta Brügger
Software Mentions: 1
Published: about 10 years ago

10.3389/fphar.2020.00794

Individualized Dosing With High Inter-Occasion Variability Is Correctly Handled With Model-Informed Precision Dosing—Using Rifampicin as an Example
Cited by: 14
Author(s): Ulrika S. H. Simonsson, Ulrika S. H. Simonsson
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.630003

A Computational Exploration of the Molecular Network Associated to Neuroinflammation in Alzheimer’s Disease
Cited by: 3
Author(s): Fatima El Idrissi, Bernard Gressier, David Devos, Karim Bélarbi
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.stemcr.2015.05.002

KeyGenes, a Tool to Probe Tissue Differentiation Using a Human Fetal Transcriptional Atlas
Cited by: 104
Author(s): Matthias S Roost, Liesbeth van Iperen, Yavuz Ariyürek, Henk P.J. Buermans, Wibowo Arindrarto, Harsha D. Devalla, Robert Passier, Christine L. Mummery, Françoise Carlotti, Eelco J.P. de Koning, Erik W. van Zwet, Jelle J. Goeman, Susana M. Chuva de Sousa Lopes
Software Mentions: 1
Published: about 11 years ago

10.1186/s12859-021-04324-z

LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
Cited by: 1
Author(s): James G. Lefevre, Yvette W. H. Koh, Adam A. Wall, Nicholas D. Condon, Jennifer L. Stow, Nicholas A. Hamilton
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-12122-y

The ClpXP protease is dispensable for degradation of unfolded proteins in Staphylococcus aureus
Cited by: 42
Author(s): Steen G. Stahlhut, Abdulelah A. Alqarzaee, Camilla Jensen, Niclas S. Fisker, Andreia Pereira, Mariana G. Pinho, Vinai Chittezham Thomas, Dorte Frees
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12538-6

Using computer simulation models to investigate the most promising microRNAs to improve muscle regeneration during ageing
Cited by: 16
Author(s): Carole J. Proctor, Katarzyna Goljanek‐Whysall
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.600979

Tenascin-C Deficiency Is Associated With Reduced Bacterial Outgrowth During Klebsiella pneumoniae-Evoked Pneumosepsis in Mice
Cited by: 9
Author(s): Mariska T. Meijer, Alex F. de Vos, Brendon P. Scicluna, Joris J T H Roelofs, Cherine Abou-Fayçal, Gertraud Orend, Fabrice Uhel, Tom van der Poll
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6355-0

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos
Cited by: 46
Author(s): Christopher J. Troll, Joshua D. Kapp, Varsha Rao, Kelly M. Harkins, Charles N. Cole, Colin Naughton, Joe P. Morgan, Beth Shapiro, Edward Green
Software Mentions: 1
Published: over 6 years ago

10.1186/s12939-020-1131-y

Prolonged health worker strikes in Kenya- perspectives and experiences of frontline health managers and local communities in Kilifi County
Cited by: 39
Author(s): Dennis Waithaka, Nancy Kagwanja, Jacinta Nzinga, Benjamin Tsofa, Hassan Leli, Christine Mataza, Amek Nyaguara, Philip Bejon, Lucy Gilson, Edwine Barasa, Sassy Molyneux
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.01036

Kuijieyuan Decoction Improved Intestinal Barrier Injury of Ulcerative Colitis by Affecting TLR4-Dependent PI3K/AKT/NF-κB Oxidative and Inflammatory Signaling and Gut Microbiota
Cited by: 69
Author(s): Baohai Liu, Xuehua Piao, Wei Niu, Qingyu Zhang, Chi Ma, Tong Wu, QiChang Gu, Tingfang Cui, Shuangdi Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.608696

Distinguishing Sepsis From Infection by Neutrophil Dysfunction: A Promising Role of CXCR2 Surface Level
Cited by: 14
Author(s): Chutima Seree-aphinan, Polathep Vichitkunakorn, Raphatphorn Navakanitworakul, Bodin Khwannimit
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.01508

Combined Use of Astragalus Polysaccharide and Berberine Attenuates Insulin Resistance in IR-HepG2 Cells via Regulation of the Gluconeogenesis Signaling Pathway
Cited by: 19
Author(s): Zhu Mao, Min Lin, Xin Zhang, Lu Ping Qin
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2021.626766

A Review of the Dose Justification of Phase 3 Trials to Regulatory Authorities for Drugs Intended for the Treatment of Type 2 Diabetes in Europe
Cited by: 0
Author(s): Jeroen V. Koomen, Jasper Stevens, Margje H. Monster‐Simons, Hiddo J.L. Heerspink, Peter G. M. Mol
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-13215-4

Non-Mendelian assortment of homologous autosomes of different sizes in males is the ancestral state in the Caenorhabditis lineage
Cited by: 13
Author(s): Tho Son Le, Fang-Jung Yang, Yun-Hua Lo, Tiffany Chang, Jung-Chen Hsu, Chia-Yi Kao, John Wang
Software Mentions: 1
Published: over 8 years ago

10.3389/fphar.2021.693167

Suppression of Inflammatory Cardiac Cytokine Network in Rats with Untreated Obesity and Pre-Diabetes by AT2 Receptor Agonist NP-6A4
Cited by: 7
Author(s): Madhavi P. Gavini, Abuzar Mahmood, Anthony Belenchia, Paige Beauparlant, Sumit Kumar, Sivakumar Ardhanari, Vincent G. DeMarco, Lakshmi Pulakat
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-13306-2

Unwavering Pathobiology of Volumetric Muscle Loss Injury
Cited by: 91
Author(s): Sarah M. Greising, Jessica C. Rivera, Stephen M. Goldman, Alain Watts, Carlos A. Aguilar, Benjamin T. Corona
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0115626

Reducing Uncertainty in the American Community Survey through Data-Driven Regionalization
Cited by: 61
Author(s): Seth E. Spielman, David C. Folch
Software Mentions: 1
Published: over 11 years ago

10.3389/fphar.2021.713197

Comprehensive Analysis of Fecal Microbiome and Metabolomics in Hepatic Fibrosis Rats Reveal Hepatoprotective Effects of Yinchen Wuling Powder From the Host-Microbial Metabolic Axis
Cited by: 5
Author(s): Yumeng Zhang, Min Zhao, Xue Jiang, Qiaoyu Qiao, Tingting Liu, Chunjie Zhao, Miao Wang
Software Mentions: 1
Published: almost 5 years ago

10.1042/BSR20204421

Traditional Chinese medicine Bu-Shen-Jian-Pi-Fang attenuates glycolysis and immune escape in clear cell renal cell carcinoma: results based on network pharmacology
Cited by: 11
Author(s): Jinzhou Zheng, Wenhao Xu, Wangrui Liu, Haijia Tang, Jin-Gen Lu, Kyeong-Nam Yu, Xianrang Song, Feng Li, Yu Wang, Rui Wang, Lili Chen, Ye Zhang, Yunhua Qiu, Gaomeng Wei, Xiqiu Zhou, Jianfeng Yang
Software Mentions: 1
Published: about 5 years ago

10.1186/s40880-017-0225-4

Exploring the potential confounder of nitrogen fertilizers in the relationship between pesticide exposures and risk of leukemia: a Poisson regression with two-way fixed-effects analysis
Cited by: 2
Author(s): Keith Fluegge, Keith Fluegge
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0080347

First Partial Skeleton of a 1.34-Million-Year-Old Paranthropus boisei from Bed II, Olduvai Gorge, Tanzania
Cited by: 135
Author(s): Manuel Domı́nguez-Rodrigo, Travis Rayne Pickering, Enrique Baquedano, Audax Mabulla, Darren F. Mark, Charles M. Musiba, Henry T. Bunn, David Uribelarrea, Vicki Smith, Fernando Diéz Martín, Alfredo Pérez‐González, Policarpo Sánchez, Manuel Santonja, Doris Barboni, Agness Gidna, Gail M. Ashley, José Yravedra, Jason L. Heaton, María Carmen Arriaza
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0177013

Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India
Cited by: 55
Author(s): Aritra Kshettry, Srinivas Vaidyanathan, Vidya Athreya
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0159086

How to Fairly Allocate Scarce Medical Resources: Ethical Argumentation under Scrutiny by Health Professionals and Lay People
Cited by: 46
Author(s): Pius Krütli, Thomas Rosemann, Kjell Törnblom, Timo Smieszek
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2021.695167

Fungal Interactions and Host Tree Preferences in the Spruce Bark Beetle Ips typographus
Cited by: 13
Author(s): Sifat Munim Tanin, D Kandasamy, Paal Krokene
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.202639

The age pattern of the male-to-female ratio in mortality from COVID-19 mirrors that of cardiovascular disease in the general population
Cited by: 10
Author(s): Ila Nimgaonkar, Linda Valeri, Ezra Süsser, Sabiha Hussain, Jag Sunderram, Abraham Aviv
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.56893

Rho1 activation recapitulates early gastrulation events in the ventral, but not dorsal, epithelium of Drosophila embryos
Cited by: 18
Author(s): Ashley Rich, Richard G. Fehon, Michael Glotzer
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/7724997

Identification of Ferroptosis-Related Long Noncoding RNA and Construction of a Novel Prognostic Signature for Gastric Cancer
Cited by: 14
Author(s): Wen-Zheng Chen, Zongfeng Feng, Jianfeng Huang, Pengcheng Fu, Jianbo Xiong, Yi Cao, Yi Liu, Yi Tu, ZhengRong Li, Zhigang Jie, Tao Xiao
Software Mentions: 1
Published: almost 5 years ago

10.1042/BSR20193271

Impairment of cell adhesion and migration by inhibition of protein disulphide isomerases in three breast cancer cell lines
Cited by: 9
Author(s): Henry S Young, Lucy M McGowan, Katy A. Jepson, Josephine C. Adams
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.615025

Regulation of Peroxisome Proliferator-Activated Receptor Pathway During Torpor in the Garden Dormouse, Eliomys quercinus
Cited by: 3
Author(s): A. Watts, Samantha M. Logan, Anna Kübber‐Heiss, Annika Posautz, Gabrielle Stalder, Johanna Painer, Kristina Gasch, Sylvain Giroud, Kenneth B. Storey
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0085203

Aerodynamic Characteristics of a Feathered Dinosaur Measured Using Physical Models. Effects of Form on Static Stability and Control Effectiveness
Cited by: 20
Author(s): Dennis Evangelista, Cardona Griselda, Guenther-Gleason Eric, Tony L. Huynh, Austin Kwong, Marks Dylan, Neil Ray, Adrian Tisbe, Kyle Tse, M. A. R. Koehl
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-15231-w

Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets
Cited by: 224
Author(s): Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2018.00878

A Mechanistic Computational Model Reveals That Plasticity of CD4+ T Cell Differentiation Is a Function of Cytokine Composition and Dosage
Cited by: 31
Author(s): Bhanwar Lal Puniya, Robert G. Todd, Akram Mohammed, Deborah M. Brown, Matteo Barberis, Tomáš Helikar
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-015-0477-4

BACA: bubble chArt to compare annotations
Cited by: 16
Author(s): Vittorio Fortino, Harri Alenius, Dario Greco
Software Mentions: 1
Published: over 11 years ago

10.1186/s12862-018-1249-3

Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies
Cited by: 25
Author(s): Dong Zhang, Hong Zou, Shan Wu, Ming Li, Ivan Jakovlić, Jin Zhang, Rong Chen, Wen X. Li, Gui T. Wang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-15152-8

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil
Cited by: 40
Author(s): Nuno Rodrigues Faria, Antônio Charlys da Costa, José Lourenço, Paula Loureiro, Maria Esther Lopes, Roberto Marques Ribeiro, Cecília Salete Alencar, Moritz U. G. Kraemer, Christian Julián Villabona-Arenas, Chieh-Hsi Wu, Julien Thézé, Kamran Khan, Shannon Brent, Camila Malta Romano, Eric Delwart, Brian Custer, Michael P. Busch, Oliver G. Pybus, Éster Cerdeira Sabino
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0176296

Ex vivo cultures combined with vivo-morpholino induced gene knockdown provide a system to assess the role of WT1 and GATA4 during gonad differentiation
Cited by: 13
Author(s): Lucas J. Rudigier, Christof Dame, Holger Scholz, Karin M. Kirschner
Software Mentions: 1
Published: about 9 years ago

10.1042/BSR20190482

High-throughput sequencing analysis of genes encoding the B-lymphocyte receptor heavy-chain CDR3 in renal and peripheral blood of IgA nephropathy
Cited by: 4
Author(s): Dapeng Chen, Zheng Zhang, Yue Yang, Quan Hong, Wenge Li, Zhuo Li
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0190927

Localized zinc distribution in shark vertebrae suggests differential deposition during ontogeny and across vertebral structures
Cited by: 12
Author(s): Vincent Raoult, Nicholas R. Howell, David Zahra, Victor M. Peddemors, Daryl L. Howard, Martin D. de Jonge, Benjamin L. Buchan, Jane E. Williamson
Software Mentions: 1
Published: over 8 years ago

10.1186/s12859-017-1955-7

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases
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Author(s): Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2021.663023

Transcriptomics Analysis and Re-sequencing Reveal the Mechanism Underlying the Thermotolerance of an Artificial Selection Population of the Pacific Oyster
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Author(s): Yulong Tan, Rong Cong, Hongsheng Qi, Luping Wang, Guofan Zhang, Ying Pan, Li Li
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.10418

In-depth proteomic profiling of the uveal melanoma secretome
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Author(s): Martina Angi, Helen Kalirai, Samuel Prendergast, Deborah M. Simpson, Dean E. Hammond, Michele C. Madigan, Robert J. Beynon, Sarah E. Coupland
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.202136

Influence of aging on deterioration of patients with COVID-19
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Author(s): Limin Pang, Yi Liu, Maoze Shen, Jujian Ye, Ruirong Chen, Zhien Lan, Zhijian Wu, Yang Guo, Peidong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3081-8

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.)
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Author(s): Mi Lu, Konstantin V. Krutovsky, C. Dana Nelson, Tomasz E. Koralewski, Thomas D. Byram, Carol A. Loopstra
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-017-15154-6

Blockade of CB1 cannabinoid receptor alters gut microbiota and attenuates inflammation and diet-induced obesity
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Author(s): Pegah Mehrpouya-Bahrami, Kumaraswamy Naidu Chitrala, Mitra S. Ganewatta, Chuanbing Tang, E. Angela Murphy, Reilly T. Enos, Kandy T. Velázquez, Jamie McCellan, Mitzi Nagarkatti, Prakash Nagarkatti
Software Mentions: 1
Published: over 8 years ago

10.2196/jmir.6371

Self-Monitoring Utilization Patterns Among Individuals in an Incentivized Program for Healthy Behaviors
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Author(s): Ju Young Kim, Nathan E. Wineinger, Michael Taitel, Jennifer M Radin, Osayi E Akinbosoye, Jenny Jiang, Nima Nikzad, Gregory Orr, Eric J. Topol, Steven R. Steinhubl
Software Mentions: 1
Published: over 9 years ago

10.3389/fphys.2019.00572

Metformin Monotherapy Downregulates Diabetes-Associated Inflammatory Status and Impacts on Mortality
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Author(s): Anteneh Mehari Tizazu, Ma Shwe Zin Nyunt, Olivier Cexus, Koolarina Suku, Esther Wing Hei Mok, Chin Hui Xian, Joni Chong, Crystal Tze Ying Tan, Wilson How, Sandra Hubert, Emilie Combet, Tamàs Fülöp, Tze Pin Ng, Anis Larbi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15980-8

Field sampling marine plankton for biodiscovery
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Author(s): Richard Andre Ingebrigtsen, Espen Hansen, Jeanette Hammer Andersen, Hans Christian Eilertsen
Software Mentions: 1
Published: over 8 years ago

10.1155/2018/1340252

Efficiency of Cell Therapy to GC-Induced ONFH: BMSCs with Dkk-1 Interference Is Not Superior to Unmodified BMSCs
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Author(s): Zhun Wei, Donghai Li, Zhouyuan Yang, Hang Zhao, Pengde Kang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0112572

Metabolomic Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole-Time of Flight Mass Spectrometry (UPLC-Q-TOF MS) Uncovers the Effects of Light Intensity and Temperature under Shading Treatments on the Metabolites in Tea
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Author(s): Qunfeng Zhang, Yuanzhi Shi, Lei Ma, Xiaoyun Yi, Jianyun Ruan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-6557-5

Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens
Cited by: 16
Author(s): Robert A. Player, Kathleen Verratti, Andrea Staab, Christopher Bradburne, Sarah L. Grady, Bruce G. Goodwin, Shanmuga Sozhamannan
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/4270957

Transcriptional Expressions of CXCL9/10/12/13 as Prognosis Factors in Breast Cancer
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Author(s): Yan Li, Mingqiang Liang, Yuxiang Lin, Jinxing Lv, Minyan Chen, Peng Zhou, Fangmeng Fu, Chuan Wang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0170647

Increased Gamma Brainwave Amplitude Compared to Control in Three Different Meditation Traditions
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Author(s): Claire Braboszcz, B. Rael Cahn, Jonathan Lévy, M. Fernàndez, Arnaud Delorme
Software Mentions: 1
Published: over 9 years ago

10.3390/biom10081097

Protein–Protein Interactions Mediated by Intrinsically Disordered Protein Regions Are Enriched in Missense Mutations
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Author(s): Eric Tsz Chung Wong, Victor So, Mike Guron, Erich R. Kuechler, Nawar Malhis, Jennifer M. Bui, Jörg Gsponer
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.soard.2018.01.039

Gastrectomy with Roux-en-Y reconstruction as a lean model of bariatric surgery
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Author(s): Geoffrey Roberts, Richard G. Kay, James W. Howard, Richard Hardwick, Frank Reimann, Fiona M. Gribble
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.42951

Regulator of G protein signaling 12 enhances osteoclastogenesis by suppressing Nrf2-dependent antioxidant proteins to promote the generation of reactive oxygen species
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Author(s): Andrew Ng, Ziqing Li, Megan M. Jones, Shuting Yang, Chunyi Li, Chuanyun Fu, Chengjian Tu, Merry Jo Oursler, Jun Qu, Shuying Yang
Software Mentions: 1
Published: almost 7 years ago

10.2196/25409

Why #WeAreNotWaiting—Motivations and Self-Reported Outcomes Among Users of Open-source Automated Insulin Delivery Systems: Multinational Survey
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Author(s): Katarina Braune, Katarzyna Anna Gajewska, Axel Thieffry, Dana Lewis, Timothée Froment, Shane O’Donnell, Jane Speight, Christel Hendrieckx, Jasmine Schipp, Timothy Skinner, Henriette Langstrup, Adrian Tappe, Klemens Raile, Bryan Cleal
Software Mentions: 1
Published: about 5 years ago

10.1111/syen.12081

Morphometric analysis and taxonomic revision of<i>Anisopteromalus</i><scp>R</scp>uschka (<scp>H</scp>ymenoptera:<scp>C</scp>halcidoidea:<scp>P</scp>teromalidae) – an integrative approach
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Software Mentions: 1
Published: about 12 years ago

10.3390/diagnostics10010016

The VNTR 48 bp Polymorphism in the DRD4 Gene Is Associated with Higher Tobacco Smoking in Male Mexican Mestizo Smokers with and without COPD
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Author(s): Gloría Pérez-Rubio, Salvador García-Carmona, Leonor García-Gómez, Andrea Hernández-Pérez, Alejandra Ramírez‐Venegas, Luis Alberto López-Flores, Raúl H Sansores, Ramcés Falfán-Valencia
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-17723-1

Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes
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Author(s): James A. Fellows Yates, Dorothée G. Drucker, Ella Reiter, Simon Heumos, Frido Welker, Susanne C. Münzel, Piotr Wojtal, Martina Lázničková‐Galetová, Nicholas J. Conard, Alexander Herbig, Hervé Bocherens, Johannes Krause
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.624980

Seasonal Variation in Viral Infection Rates and Cell Sizes of Infected Prokaryotes in a Large and Deep Freshwater Lake (Lake Biwa, Japan)
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Author(s): Shang Shen, Yoshihisa Shimizu
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.01174

Extracellular Vesicles Derived From Trichinella spiralis Muscle Larvae Ameliorate TNBS-Induced Colitis in Mice
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Author(s): Yong Yang, Lei Liu, Xiaolei Liu, Yuanyuan Zhang, Hailian Shi, Wan‐Zhong Jia, Hongfei Zhu, Hong Peng Jia, Mingyuan Liu, Xue Bai
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2021.637190

Quantitative High-Throughput, Real-Time Bioassay for Plant Pathogen Growth in vivo
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Author(s): Chunqiu Zhang, Ben N. Mansfeld, Ying-Zu Lin, Rebecca Grumet
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0237178

Entanglement rates and haulout abundance trends of Steller (Eumetopias jubatus) and California (Zalophus californianus) sea lions on the north coast of Washington state
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Author(s): Elizabeth Marina Allyn, Jonathan J. Scordino
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2020.00643

Stomata and Sporophytes of the Model Moss Physcomitrium patens
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Author(s): Robert S. Caine, Caspar Chater, Andrew J. Fleming, Julie E. Gray
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0159518

High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
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Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: almost 10 years ago

10.1017/S0950268819000724

Epidemiologic patterns of human<i>Salmonella</i>serotype diversity in the USA, 1996–2016
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Author(s): Michael C. Judd, Robert M. Hoekstra, Barbara E. Mahon, Patricia I. Fields, Karen K. Wong
Software Mentions: 1
Published: over 7 years ago

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