cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0032146

Human Platelet-Rich Plasma- and Extracellular Matrix-Derived Peptides Promote Impaired Cutaneous Wound Healing In Vivo
Cited by: 56
Author(s): Tatiana N. Demidova-Rice, Lindsey N. Wolf, Jeffry Deckenback, Michael R. Hamblin, Ira M. Herman
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-020-67671-6

Suppression of chorismate synthase, which is localized in chloroplasts and peroxisomes, results in abnormal flower development and anthocyanin reduction in petunia
Cited by: 10
Author(s): Shiwei Zhong, Zeyu Chen, Jin-Yi Han, Huina Zhao, Juanxu Liu, Yingnian Yu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0221200

Covariates of diarrhoea among under-five children in India: Are they level dependent?
Cited by: 8
Author(s): Mala Ramanathan, Bevin Vijayan
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0239492

Evaluation of pooled sample analysis strategy in expediting case detection in areas with emerging outbreaks of COVID-19: A pilot study
Cited by: 15
Author(s): Anirudh Singh, Ram Kumar Nema, Ankur Joshi, Prem Shankar, Shashwati Nema, Arun Raghuwanshi, Chitra Patankar, Bijina J. Mathew, Arti Shrivas, Ritu Pandey, Ranu Tripathi, Debasis Biswas, Sarman Singh
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-68094-z

Effect of network topology and node centrality on trading
Cited by: 8
Author(s): Felipe Maciel Cardoso, Carlos Gracia-Lázaro, Frédéric Moisan, Sanjeev Goyal, Ángel Sánchez, Yamir Moreno
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0214013

Zooplankters’ nightmare: The fast and efficient catching basket of larval phantom midges (Diptera: Chaoborus)
Cited by: 11
Author(s): Sebastian Kruppert, Lisa Deussen, Linda C. Weiss, Martin Horstmann, Jonas Wolff, Thomas Kleinteich, Stanislav N. Gorb, Ralph Tollrian
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-68075-2

Genome wide association analysis of a stemborer egg induced “call-for-help” defence trait in maize
Cited by: 18
Author(s): Amanuel Tamiru, Rajneesh Paliwal, Samuel J. Manthi, Damaris Achieng Odeny, Charles A. O. Midega, Zeyaur R. Khan, John A. Pickett, Toby J. A. Bruce
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-020-00812-5

The evolutionarily conserved ESRE stress response network is activated by ROS and mitochondrial damage
Cited by: 14
Author(s): Elissa Tjahjono, Aidan P. McAnena, Natalia V. Kirienko
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0187933

Relationship between fine particulate matter, weather condition and daily non-accidental mortality in Shanghai, China: A Bayesian approach
Cited by: 22
Author(s): Xin Fang, Bo Fang, Chunfang Wang, Tian Xia, Matteo Bottai, Fang Fang, Yang Cao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-68172-2

Her9/Hes4 is required for retinal photoreceptor development, maintenance, and survival
Cited by: 6
Author(s): Cagney E. Coomer, Stephen G. Wilson, Kayla F. Titialii-Torres, Jessica D. Bills, Laura A. Krueger, Rebecca A. Petersen, Evelyn M. Turnbaugh, Eden L. Janesch, Ann C. Morris
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0239613

Associations between individual variations in visual attention at 9 months and behavioral competencies at 18 months in rural Malawi
Cited by: 3
Author(s): Juha Pyykkö, Per Ashorn, Eletina Chilora, Kenneth Maleta, Per Ashorn, Jukka Leppänen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0236489

Incubating parents serve as visual cues to predators in Kentish plover (Charadrius alexandrinus)
Cited by: 6
Author(s): Noémie Engel, Zsolt Végvári, Romy Rice, Vojtěch Kubelka, Tamás Székely
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0088419

Bayesian Model Comparison and Parameter Inference in Systems Biology Using Nested Sampling
Cited by: 38
Author(s): Nick Pullen, Richard J. Morris
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0101685

Genetic Variation in DNA Repair Pathways and Risk of Non-Hodgkin's Lymphoma
Cited by: 20
Author(s): Justin Rendleman, Yevgeniy Antipin, Boris Reva, Christina Adaniel, Jennifer A. Przybylo, Ana Dutra-Clarke, Nichole Hansen, Adriana Heguy, Kety Huberman, Laetitia Borsu, Ora Paltiel, Dina Ben‐Yehuda, Jennifer R. Brown, Arnold S. Freedman, Chris Sander, Andrew D. Zelenetz, Robert J. Klein, Yongzhao Shao, Mortimer J. Lacher, Joseph Vijai, Kenneth Offit, Tomas Kirchhoff
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0208829

Complex spatio-temporal distribution and genomic ancestry of mitochondrial DNA haplogroups in 24,216 Danes
Cited by: 5
Author(s): Jonas Bybjerg‐Grauholm, Christian Munch Hagen, Vanessa F. Gonçalves, Marie Bækvad‐Hansen, Christine Hansen, Paula L. Hedley, Jørgen K. Kanters, Jimmi Nielsen, Michael Theisen, Ole Mors, James L. Kennedy, Thomas Damm Als, Alfonso Buil Demur, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-68496-z

Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant
Cited by: 16
Author(s): Loı̈c Morin, Anne Goubet, Céline Madigou, Jean‐Jacques Pernelle, Karima Palmier, Karine Labadie, Arnaud Lemainque, Ophélie Michot, Lucie Astoul, Paul Barbier, Jean-Luc Almayrac, Abdelghani Sghir
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-021-01138-6

Single-cell analysis at the protein level delineates intracellular signaling dynamic during hematopoiesis
Cited by: 5
Author(s): Jinheng Wang, Chenggong Tu, Hui Zhang, Yongliang Huo, Eline Menu, Jinbao Liu
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0146538

Knowledge of Bovine Tuberculosis, Cattle Husbandry and Dairy Practices amongst Pastoralists and Small-Scale Dairy Farmers in Cameroon
Cited by: 38
Author(s): Robert F. Kelly, Saidou M. Hamman, K. L. Morgan, Egbe Franklyn Nkongho, Victor Ngu Ngwa, Vincent N. Tanya, Walters N. Andu, Melissa Sander, Lucy Ndip, Ian Handel, Stella Mazeri, Adrian Muwonge, Barend M. deC. Bronsvoort
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.202322

Identification of novel SNPs associated with coronary artery disease and birth weight using a pleiotropic cFDR method
Cited by: 1
Author(s): Xinrui Wu, Xu Lin, Qi Li, Zun Wang, Na Zhang, Mengyuan Tian, Xiaolei Wang, Hong‐Wen Deng, Hongzhuan Tan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0099782

Human Coronaviruses Associated with Upper Respiratory Tract Infections in Three Rural Areas of Ghana
Cited by: 63
Author(s): Michael Owusu, Augustina Annan, Victor M. Corman, Richard Larbi, Priscilla Anti, Jan Felix Drexler, Olivia Agbenyega, Yaw Adu‐Sarkodie, Christian Drosten
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0098076

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations
Cited by: 119
Author(s): Alexia Cardona, Luca Pagani, Tiago Antão, Daniel J. Lawson, Christina A. Eichstaedt, Bryndís Yngvadóttir, Ma Than Than Shwe, Joseph Wee, Irene Gallego Romero, Srilakshmi M. Raj, Mait Metspalu, Richard Villems, Eske Willerslev, Chris Tyler‐Smith, B. A. Malyarchuk, Miroslava Derenko, Toomas Kivisild
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0205429

Tool making cockatoos adjust the lengths but not the widths of their tools to function
Cited by: 14
Author(s): Alice M. I. Auersperg, Celeste de Kock, Mark O’Hara, Ludwig Huber
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-69036-5

Milk fat globule size development in the mammary epithelial cell: a potential role for ether phosphatidylethanolamine
Cited by: 5
Author(s): Leonie Walter, Vinod K. Narayana, R. C. Fry, Amy Logan, Dedreia Tull, Brian J Leury
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-019-0657-1

ImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks
Cited by: 39
Author(s): Özer Erguvan, Marion Louveaux, Olivier Hamant, Stéphane Verger
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0179172

Trends in food insecurity for adults with cardiometabolic disease in the United States: 2005-2012
Cited by: 96
Author(s): Seth A. Berkowitz, Theodore S Z Berkowitz, James B. Meigs, Deborah J. Wexler
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0257583

Racial and ethnic disparities in HIV diagnoses among heterosexually active persons in the United States nationally and by state, 2018
Cited by: 4
Author(s): Erika G. Martin, Bahareh Ansari, Rachel Hart-Malloy, Dawn K. Smith, Kevin P. Delaney, Thomas L. Gift, Andrés A. Berruti, Monica Trigg, Eli S. Rosenberg
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0247783

Transcriptome analysis of the role of autophagy in plant response to heat stress
Cited by: 4
Author(s): Yan Zhang, Haoxuan Min, Chengchen Shi, Xia Gao, Zhibing Lai
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.47460

A distinct cardiopharyngeal mesoderm genetic hierarchy establishes antero-posterior patterning of esophagus striated muscle
Cited by: 17
Author(s): Glenda Comai, Églantine Heude, Sébastien Mella, Sylvain Paisant, Francesca Pala, Mirialys Gallardo, Francina Langa, Gabrielle Kardon, Swetha Gopalakrishnan, Shahragim Tajbakhsh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0230141

Design of composite measure schemes for comparative severity assessment in animal-based neuroscience research: A case study focussed on rat epilepsy models
Cited by: 15
Author(s): Roelof Maarten van Dijk, Ines Koska, André Bleich, René Tolba, Isabel Seiffert, Christina Möller, Valentina Di Liberto, Steven R. Talbot, Heidrun Potschka
Software Mentions: 1
Published: about 6 years ago

10.1186/s12915-019-0724-7

Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics
Cited by: 43
Author(s): Gillian P. McHugo, Michael J. Dover, David E. MacHugh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0221212

Citation gaming induced by bibliometric evaluation: A country-level comparative analysis
Cited by: 63
Author(s): Alberto Baccini, Giuseppe De Nicolao, Eugenio Petrovich
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0192093

A comparison of methods to assess the antimicrobial activity of nanoparticle combinations on bacterial cells
Cited by: 72
Author(s): Claire Bankier, Yuen-Ki Cheong, Shanmugam Muthusubramanian, Mohan Edirisinghe, Guogang Ren, Elaine Cloutman-Green, Lena Ciric
Software Mentions: 1
Published: over 8 years ago

10.1186/s12915-020-0760-3

A metabolic switch regulates the transition between growth and diapause in C. elegans
Cited by: 46
Author(s): Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean‐Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0110727

Quantification of Tumor Vessels in Glioblastoma Patients Using Time-of-Flight Angiography at 7 Tesla: A Feasibility Study
Cited by: 29
Author(s): Alexander Radbruch, Oliver Eidel, Benedikt Wiestler, Daniel Paech, Sina Burth, Philipp Kickingereder, Martha Nowosielski, Philipp Bäumer, Wolfgang Wick, Heinz Peter Schlemmer, Martin Bendszus, Mark E. Ladd, Armin M. Nagel, Sabine Heiland
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0135311

Collective Attention and Stock Prices: Evidence from Google Trends Data on Standard and Poor's 100
Cited by: 31
Author(s): Raphael H. Heiberger
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0129506

Biomedical Data Sharing and Reuse: Attitudes and Practices of Clinical and Scientific Research Staff
Cited by: 67
Author(s): Lisa Federer, Ya-Ling Lu, Douglas Joubert, Judith A. Welsh, Barbara Brandys
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0232965

The double-edged sword role of fibroblasts in the interaction with cancer cells; an agent-based modeling approach
Cited by: 8
Author(s): Zarifeh Heidary, Jafar Ghaisari, Shiva Moein, Shaghayegh Haghjooy Javanmard
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0113608

Immunohistochemistry of Colorectal Cancer Biomarker Phosphorylation Requires Controlled Tissue Fixation
Cited by: 26
Author(s): Abbey Theiss, David Chafin, Daniel R. Bauer, Thomas M. Grogan, Geoffrey S. Baird
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0110474

Flooding and Emergency Room Visits for Gastrointestinal Illness in Massachusetts: A Case-Crossover Study
Cited by: 39
Author(s): Timothy J. Wade, Cynthia J. Lin, Jyotsna S. Jagai, Elizabeth D. Hilborn
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0252626

S-ketamine in patient-controlled analgesia reduces opioid consumption in a dose-dependent manner after major lumbar fusion surgery: A randomized, double-blind, placebo-controlled clinical trial
Cited by: 17
Author(s): Elina C. V. Brinck, T Virtanen, Sanna M. Mäkelä, Venla Soini, Ville-Veikko Hynninen, Jukka Mulo, Urmas Savolainen, Juho Rantakokko, Kreu Maisniemi, Antti Liukas, Klaus T. Olkkola, Vesa K. Kontinen, P. Tarkkila, Marko A. Peltoniemi, Teijo I. Saari
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0203503

Chronic fatigue syndrome patients have alterations in their oral microbiome composition and function
Cited by: 7
Author(s): Taiwu Wang, Li Yu, Cong Xu, Keli Pan, Minglu Mo, Mingxiang Duan, Yao Zhang, Hongyan Xiong
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0215665

Epidemiological and clinical features of Kawasaki disease in Spain over 5 years and risk factors for aneurysm development. (2011-2016): KAWA-RACE study group
Cited by: 38
Author(s): Elisa Fernández-Cooke, Ana Barrios Tascón, Judith Sánchez-Manubens, Jordi Antón, Carlos Grasa, Javier Aracil Santos, Enrique Villalobos Pinto, Daniel Clemente Garulo, Beatriz Mercader Rodríguez, Matilde Bustillo-Alonso, Esmeralda Núñez-Cuadros, María Luisa Navarro Gómez, Sara Domínguez‐Rodríguez, Cristina Calvo
Software Mentions: 1
Published: about 7 years ago

10.1186/s12915-021-01085-2

An economical and highly adaptable optogenetics system for individual and population-level manipulation of Caenorhabditis elegans
Cited by: 1
Author(s): Mandy Koopman, Leen Janssen, Ellen A. A. Nollen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0086919

Pharmacogenetic-Based Efavirenz Dose Modification: Suggestions for an African Population and the Different CYP2B6 Genotypes
Cited by: 58
Author(s): Jackson Mukonzo, Joel Owen, Jasper Ogwal-Okeng, Ronald Bisaso Kuteesa, Sarah Nanzigu, Nelson Sewankambo, Lehana Thabane, Lars L. Gustafsson, Colin J.D. Ross, Eleni Aklillu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0122273

Effect of Roux-en-Y Gastric Bypass Surgery on Bile Acid Metabolism in Normal and Obese Diabetic Rats
Cited by: 64
Author(s): Hina Y. Bhutta, Neetu Rajpal, Wendy B. White, Johannes M. Freudenberg, Yaping Liu, James M. Way, Deepak K. Rajpal, David C. Cooper, Andrew Young, Ali Tavakkoli, Lihong Chen
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-69354-8

Tales of 1,008 small molecules: phenomic profiling through live-cell imaging in a panel of reporter cell lines
Cited by: 31
Author(s): Michael J. Cox, Steffen Jaensch, Jelle Van de Waeter, Laure Cougnaud, Daan Seynaeve, Soulaiman Benalla, Seong Joo Koo, Ilse Van den Wyngaert, Jean-Marc Neefs, Dmitry Malkov, Mart Bittremieux, Margino Steemans, Pieter J. Peeters, Jörg K. Wegner, Hugo Ceulemans, Emmanuel Gustin, Yolanda T. Chong, Hinrich W. H. Göhlmann
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0169275

Quantifying the Carbon Balance of Forest Restoration and Wildfire under Projected Climate in the Fire-Prone Southwestern US
Cited by: 24
Author(s): Matthew D. Hurteau
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-018-2170-x

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
Cited by: 7
Author(s): Tom Hartmann, Matthias Bernt, Martin Middendorf
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0220882

The largest fish in the world’s biggest river: Genetic connectivity and conservation of Arapaima gigas in the Amazon and Araguaia-Tocantins drainages
Cited by: 18
Author(s): Izeni Pires Farias, Stuart C. Willis, Adam Souza de Alencar Leão, Júlia Tovar Verba, Marcelo Crossa, Fausto Foresti, Fábio Porto‐Foresti, Iracilda Sampaio, Tomas Hrbek
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.65487

Inverse regulation of Vibrio cholerae biofilm dispersal by polyamine signals
Cited by: 18
Author(s): Andrew A. Bridges, Bonnie L. Bassler
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0233315

Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli
Cited by: 5
Author(s): Susanne Sütterlin, James E. Bray, Martin C. J. Maiden, Eva Tano
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0248124

Kinesthetic engagement in Gestalt evaluation outscores analytical ‘atomic feature’ evaluation in perceiving aging in crystallization images of agricultural products
Cited by: 2
Author(s): Paul Doesburg, Jürgen Fritz, Miriam Athmann, Roya Bornhütter, Nicolaas Busscher, Uwe Geier, Gaby Mergardt, Claudia Scherr
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0099899

A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays
Cited by: 12
Author(s): Sigrún H. Lund, Daníel F. Guðbjartsson, Thorunn Rafnar, Ásgeir Sigurðsson, Sigurjon A. Gudjonsson, Jūlı́us Guðmundsson, Kári Stefánsson, Gunnar Stefánsson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0208548

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds
Cited by: 8
Author(s): Salvatore Mastrangelo, Filippo Biscarini, Marco Tolone, Barbara Auzino, Marco Ragatzu, Andrea Spaterna, Roberta Ciampolini
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.101767

A novel six-microRNA-based model to improve prognosis prediction of breast cancer
Cited by: 32
Author(s): Jianguo Lai, Hongli Wang, Zihao Pan, Fengxi Su
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-016-1250-z

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Cited by: 78
Author(s): Santhilal Subhash, Chandrasekhar Kanduri
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12859-021-04324-z

LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
Cited by: 1
Author(s): James G. Lefevre, Yvette W. H. Koh, Adam A. Wall, Nicholas D. Condon, Jennifer L. Stow, Nicholas A. Hamilton
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0188824

Technological variability in the Late Palaeolithic lithic industries of the Egyptian Nile Valley: The case of the Silsilian and Afian industries
Cited by: 5
Author(s): Alice Leplongeon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0190345

Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic
Cited by: 24
Author(s): Eneko Bachiller, Kjell Rong Utne, Teunis Jansen, Geir Huse
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0101151

Miz-1 Activates Gene Expression via a Novel Consensus DNA Binding Motif
Cited by: 13
Author(s): Bonnie L. Barrilleaux, Dana Burow, Sarah H. Lockwood, Abigail Yu, David J. Segal, Paul S. Knoepfler
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12859-015-0477-4

BACA: bubble chArt to compare annotations
Cited by: 16
Author(s): Vittorio Fortino, Harri Alenius, Dario Greco
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0227003

Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss)
Cited by: 15
Author(s): Bernat Morro, Mary K. Doherty, Pablo Balseiro, Sigurd O. Handeland, Simon Mackenzie, Harald Sveier, Amaya Albalat
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0187568

Computer simulation models as a tool to investigate the role of microRNAs in osteoarthritis
Cited by: 12
Author(s): Carole J. Proctor, Graham R. Smith
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0227250

Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici and the potential for rapid asexual evolution
Cited by: 13
Author(s): Jian Hu, Sandesh Shrestha, Yuxin Zhou, Joann Mudge, Xili Liu, Kurt Lamour
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-017-1955-7

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases
Cited by: 9
Author(s): Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0233709

From nutrients to competition processes: Habitat specific threats to Arnica montana L. populations in Hesse, Germany
Cited by: 9
Author(s): Verena Hollmann, Tobias W. Donath, Florian Grammel, Tina Himmighofen, Ute Zerahn, Ilona Leyer
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.103554

Analysis of plasma metabolic profile, characteristics and enzymes in the progression from chronic hepatitis B to hepatocellular carcinoma
Cited by: 22
Author(s): Fei-Fei Cai, Yanan Song, Yi‐Yu Lu, Yongyu Zhang, Yiyang Hu, Shi‐Bing Su
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71687-3

Comparing the tractability of young hand-raised wolves (Canis lupus) and dogs (Canis familiaris)
Cited by: 10
Author(s): Dorottya Júlia Ujfalussy, Zsófia Virányi, Márta Gácsi, Tamás Faragó, Ákos Pogány, Boróka Mária Bereczky, Ádám Miklósi, Enikő Kubinyi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0157912

Assessing the Complex and Evolving Relationship between Charges and Payments in US Hospitals: 1996 – 2012
Cited by: 13
Author(s): Hannah Hamavid, Maxwell Birger, Anne Bulchis, Liya Lomsadze, Jonathan Joseph, Ranju Baral, Anthony L. Bui, Cody Horst, Elizabeth Johnson, Joseph L Dieleman
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0154807

Virtual Hand Feedback Reduces Reaction Time in an Interactive Finger Reaching Task
Cited by: 9
Author(s): Johannes Brand, Marco Piccirelli, Marie-Claude Hepp-Reymond, Manfred Morari, Lars Michels, Kynan Eng
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0066151

Optical Coherence Tomography Reveals Distinct Patterns of Retinal Damage in Neuromyelitis Optica and Multiple Sclerosis
Cited by: 149
Author(s): Eric Schneider, Hanna Zimmermann, Timm Oberwahrenbrock, Falko Kaufhold, Ella Maria Kadas, Axel Petzold, F Bilger, Nadja Borisow, Sven Jarius, Brigitte Wildemann, Klemens Ruprecht, Alexander U. Brandt, Friedemann Paul
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-020-71775-4

High MHC-II expression in Epstein–Barr virus-associated gastric cancers suggests that tumor cells serve an important role in antigen presentation
Cited by: 21
Author(s): Farhad Ghasemi, Tanner M. Tessier, Steven F. Gameiro, Allison H. Maciver, Matthew J. Cecchini, Joe S. Mymryk
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0185762

The common oncogenomic program of NOTCH1 and NOTCH3 signaling in T-cell acute lymphoblastic leukemia
Cited by: 29
Author(s): Sung Hee Choi, Eric Allan Severson, Warren S. Pear, Xiaole S. Liu, Jon C. Aster, Stephen C. Blacklow
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-71972-1

Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing
Cited by: 13
Author(s): Feng Li, Akira Komatsu, Miki Ohtake, Heesoo Eun, Akifumi Shimizu, Hiroshi Katô
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0256035

No difference in biomarkers of ischemic heart injury and heart failure in patients with COVID-19 who received treatment with chloroquine phosphate and those who did not
Cited by: 0
Author(s): Josefine Beck-Friis, Susannah Leach, Elmir Ömerovic, Rickard Zeijlon, Magnus Gisslén, Aylin Yilmaz
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0208828

Schizophrenia-associated mt-DNA SNPs exhibit highly variable haplogroup affiliation and nuclear ancestry: Bi-genomic dependence raises major concerns for link to disease
Cited by: 12
Author(s): Christian Munch Hagen, Vanessa F. Gonçalves, Paula L. Hedley, Jonas Bybjerg‐Grauholm, Marie Bækvad‐Hansen, Christine Søholm Hansen, Jørgen K. Kanters, Jimmi Nielsen, Ole Mors, Alfonso Buil Demur, Thomas Damm Als, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, James L. Kennedy, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-72080-w

Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing
Cited by: 6
Author(s): Swapnil Vilas Bhujbal, Maren Dekov, Vegar Ottesen, Karen Dunker, Rahmi Lale, Marit Sletmoen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0153071

Is Shape of a Fresh and Dried Leaf the Same?
Cited by: 20
Author(s): Dominik Tomaszewski, Angelika Górzkowska
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-72191-4

Characterization of raffinose metabolism genes uncovers a wild Arachis galactinol synthase conferring tolerance to abiotic stresses
Cited by: 32
Author(s): C. C. Vinson, Ana Paula Zotta Mota, Brenda Neves Porto, Thais Nicolini Oliveira, Iracyara Sampaio, A. L. M. Lacerda, Étienne Danchin, P. M. Guimarães, Thomas Christopher Rhys Williams, Ana Cristina Miranda Brasileiro
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12859-021-04034-6

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants
Cited by: 180
Author(s): Sebastian M. Siegner, Mehmet E. Karasu, Markus S. Schröder, Zacharias Kontarakis, Jacob E. Corn
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0167127

Genome-Scale Assessment of Age-Related DNA Methylation Changes in Mouse Spermatozoa
Cited by: 13
Author(s): Norio Kobayashi, Hiroaki Okae, Hitoshi Hiura, Hayato Chiba, Yoshiki Shirakata, Kenshiro Hara, Kentaro Tanemura, Takahiro Arima
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0061875

Managing Hytrosavirus Infections in Glossina pallidipes Colonies: Feeding Regime Affects the Prevalence of Salivary Gland Hypertrophy Syndrome
Cited by: 24
Author(s): Adly M. M. Abd-Alla, Henry M. Kariithi, Abdul Hasim Mohamed, Edgardo Lapiz, Andrew G. Parker, Marc J. B. Vreysen
Software Mentions: 1
Published: about 13 years ago

10.3399/bjgpopen18X101622

Family practitioners' top medical priorities when managing patients with multimorbidity: a cross-sectional study
Cited by: 6
Author(s): Lilli Herzig, Yolanda Müeller, Dagmar M. Haller, Andreas Zeller, Stefan Neuner-Jehle, Anouk Déruaz‐Luyet, Christine Cohidon, Sven Streit, Bernard Burnand, Jean-Christophe Zuchuat
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0129100

Nevirapine Concentration in Hair Samples Is a Strong Predictor of Virologic Suppression in a Prospective Cohort of HIV-Infected Patients
Cited by: 41
Author(s): Sanjiv M. Baxi, Ruth M. Greenblatt, Peter Bacchetti, Chengshi Jin, Audrey L. French, Marla J. Keller, Michael Augenbraun, Stephen J. Gange, Chenglong Liu, Wendy J. Mack, Monica Gandhi, Women’s Interagency Hiv Study
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-71952-5

Neural correlates of mindful emotion regulation in high and low ruminators
Cited by: 9
Author(s): David Rosenbaum, Agnes Kroczek, Justin Hudak, Julian Rubel, Moritz J. Maier, Theresa Sorg, Lucca Weisbender, Lara Goldau, Douglas S. Mennin, David M. Fresco, Andreas J. Fallgatter, Ann‐Christine Ehlis
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0184548

Estimating the incidence of interstitial lung diseases in the Cree of Eeyou Istchee, northern Québec
Cited by: 8
Author(s): Matthieu Storme, Alexandre Semionov, Deborah Assayag, Michael Lefson, Darlene Kitty, David Dannenbaum, Jill Torrie, Pierre Lejeune, Elizabeth Robinson, Faiz Ahmad Khan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0201400

The genetic connectedness calculated from genomic information and its effect on the accuracy of genomic prediction
Cited by: 3
Author(s): Suoyu Zhang, Babatunde Shittu Olasege, Dengying Liu, Qishan Wang, Yuchun Pan, Peipei Ma
Software Mentions: 1
Published: almost 8 years ago

10.1089/ast.2016.1615

Replication of Simulated Prebiotic Amphiphilic Vesicles in a Finite Environment Exhibits Complex Behavior That Includes High Progeny Variability and Competition
Cited by: 7
Author(s): Don Armstrong, Doron Lancet, Raphael Zidovetzki
Software Mentions: 1
Published: about 8 years ago

10.1007/s00402-020-03691-1

Recommendations for return to sports after total hip arthroplasty are becoming less restrictive as implants improve
Cited by: 16
Author(s): Tu-Lan Vu-Han, Sebastian Hardt, R. Ascherl, Clemens Gwinner, Carsten Perka
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0172630

Scarless deletion of up to seven methyl-accepting chemotaxis genes with an optimized method highlights key function of CheM in Salmonella Typhimurium
Cited by: 45
Author(s): Stefanie Hoffmann, Christiane Schmidt, Steffi Walter, Jennifer K. Bender, Roman G. Gerlach
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-72693-1

Bayesian approach for maize yield response to plant density from both agronomic and economic viewpoints in North America
Cited by: 4
Author(s): Josefina Lacasa, Adam P. Gaspar, M. Hinds, Sampath Jayasinghege Don, Dan Berning, Ignacio A. Ciampitti
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0234182

Focused ultrasound for safe and effective release of brain tumor biomarkers into the peripheral circulation
Cited by: 23
Author(s): Lifei Zhu, Arash Nazeri, Christopher Pham Pacia, Yimei Yue, Hong Chen
Software Mentions: 1
Published: about 6 years ago

10.1007/s00403-019-02000-0

Molecular profiling of TOX-deficient neoplastic cells in cutaneous T cell lymphoma
Cited by: 4
Author(s): Jingkai Xu, He Huang, Shangshang Wang, Yanzhen Chen, Xueli Yin, Xuejun Zhang, Yaohua Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0198468

Eliciting improved quantitative judgements using the IDEA protocol: A case study in natural resource management
Cited by: 81
Author(s): Victoria Hemming, Terry Walshe, Anca M. Hanea, Fiona Fidler, Mark A. Burgman
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.61287

Characterization of the mechanism by which the RB/E2F pathway controls expression of the cancer genomic DNA deaminase APOBEC3B
Cited by: 22
Author(s): Pieter A. Roelofs, Chai Yeen Goh, Boon Haow Chua, Matthew C. Jarvis, Teneale A. Stewart, John D. McCann, Rebecca M. McDougle, Michael A. Carpenter, John W.M. Martens, Paul N. Span, Dennis Kappei, Reuben S. Harris
Software Mentions: 1
Published: over 5 years ago

10.1007/s00253-014-6199-0

Bacillus subtilis as heterologous host for the secretory production of the non-ribosomal cyclodepsipeptide enniatin
Cited by: 49
Author(s): Sophia Zobel, Jana Kumpfmüller, Roderich D. Süssmuth, Thomas Schweder
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0233573

Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae)
Cited by: 10
Author(s): Daniele Salvi, Emanuele Berrilli, Paola D’Alessandro, Maurizio Biondi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0251625

Effects of experimental warming on Betula nana epidermal cell growth tested over its maximum climatological growth range
Cited by: 4
Author(s): Fabian E.Z. Ercan, Juha Mikola, Tarja Silfver, Kristiina Myller, Elina Vainio, Sandra Słowińska, Michael Słowiński, Mariusz Lamentowicz, Daan Blok, Friederike Wagner-Cremer
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0213293

Potential role of weather, soil and plant microbial communities in rapid decline of apple trees
Cited by: 22
Author(s): Jugpreet Singh, Katchen Julliany Pereira Silva, Marc Fuchs, Awais Khan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0137139

Exploring a Tomato Landraces Collection for Fruit-Related Traits by the Aid of a High-Throughput Genomic Platform
Cited by: 71
Author(s): Adriana Sacco, Valentino Ruggieri, Mario Parisi, Giovanna Festa, Maria Manuela Rigano, Maurizio Enea Picarella, Andrea Mazzucato, Amalia Barone
Software Mentions: 1
Published: over 10 years ago

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