cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-89140-4

Proteome and transcriptome analyses of wheat near isogenic lines identifies key proteins and genes of wheat bread quality
Cited by: 2
Author(s): Liangjie Lv, Aiju Zhao, Yelun Zhang, Hui Li, Xiyong Chen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88904-2

A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89091-w

Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus
Cited by: 16
Author(s): Guilherme Borges Dias, Musaad A. Altammami, Hamadttu A. F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.668007

Comparative Analysis on Abnormal Methylome of Differentially Expressed Genes and Disease Pathways in the Immune Cells of RA and SLE
Cited by: 19
Author(s): Qinghua Fang, Tingyue Li, Pei-Ya Chen, Yuzhe Wu, Tingting Wang, Lixia Mo, Jiaxin Ou, Kutty Selva Nandakumar
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2019.01353

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis
Cited by: 19
Author(s): Askhat Myngbay, Yergali Bexeitov, Altynai Adilbayeva, Zhenisbek Assylbekov, Bogdan P. Yevstratenko, Rysgul M. Aitzhanova, Bakhyt Matkarimov, Vyacheslav A. Adarichev, Jeannette Kunz
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.02871-18

Targeting mTOR with MLN0128 Overcomes Rapamycin and Chemoresistant Primary Effusion Lymphoma
Cited by: 26
Author(s): Carolina Caro-Vegas, Aubrey Bailey, Rachele Bigi, Blossom Damania, Dirk P. Dittmer
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-88961-7

Macrophage morphological plasticity and migration is Rac signalling and MMP9 dependant
Cited by: 8
Author(s): Jana Trávníčková, Sandra Nhim, Naoill Abdellaoui, Farida Djouad, Maï Nguyen-Chi, Andrea Parmeggiani, Karima Kissa
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88568-y

Artificial insemination and parthenogenesis in the whitespotted bamboo shark Chiloscyllium plagiosum
Cited by: 8
Author(s): Jennifer T. Wyffels, Lance Adams, Frank Bulman, Ari Fustukjian, Michael W. Hyatt, Kevin A. Feldheim, Linda M. Penfold
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89518-4

Developments in data science solutions for carnivore tooth pit classification
Cited by: 25
Author(s): Lloyd A. Courtenay, Darío Herranz‐Rodrigo, Diego González‐Aguilera, José Yravedra
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89713-3

Heme cytotoxicity is the consequence of endoplasmic reticulum stress in atherosclerotic plaque progression
Cited by: 2
Author(s): Dávid Pethő, Zoltán Hendrik, Annamária Nagy, Lívia Beke, Andreas Patsalos, László Nagy, Szilárd Póliska, Gábor Méhes, Csaba Tóth, László Potor, John W. Eaton, Harry S. Jacob, György Balla, József Balla, Tamás Gáll
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90107-8

Assessment and optimization of respiratory syncytial virus prophylaxis in Connecticut, 1996–2013
Cited by: 3
Author(s): Ben Artin, Virginia E. Pitzer, Daniel M Weinberger
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91177-4

BAFF predicts immunogenicity in older patients with rheumatoid arthritis treated with TNF inhibitors
Cited by: 4
Author(s): Borja Hernández-Breijo, Victoria Navarro-Compán, Chamaida Plasencia-Rodríguez, Ioannis Parodis, Johanna Elin Gehin, Ana Martínez‐Feito, Marta Novella-Navarro, Araceli Mezcua, David J. Warren, Pilar Nozal, Dora Pascual‐Salcedo, Alejandro Balsa
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.597399

Immune Interaction Map of Human SARS-CoV-2 Target Genes: Implications for Therapeutic Avenues
Cited by: 4
Author(s): Karthikeyan Subbarayan, Kamatchi Ulagappan, Claudia Wickenhauser, Michael Bachmann, Barbara Seliger
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90925-w

Genome-wide association study on blood pressure traits in the Iranian population suggests ZBED9 as a new locus for hypertension
Cited by: 5
Author(s): Goodarz Kolifarhood, Siamak Sabour, Mahdi Akbarzadeh, Bahareh Sedaghati-Khayat, Kamran Guity, Saeid Rasekhi Dehkordi, Mahmoud Amiri Roudbar, Farzad Hadaegh, Fereidoun Azizi, Maryam Sadat Daneshpour
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90710-9

Vocal universals and geographic variations in the acoustic repertoire of the common bottlenose dolphin
Cited by: 17
Author(s): Ana Rita Luís, Laura J. May‐Collado, Nikolina Rako‐Gospić, Tess Gridley, Elena Papale, Alexandre de Freitas Azevedo, Mónica Silva, Giuseppa Buscaino, Denise L. Herzing, Manuel Eduardo dos Santos
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90938-5

Transcriptomic analysis of cork during seasonal growth highlights regulatory and developmental processes from phellogen to phellem formation
Cited by: 9
Author(s): Sandra Fernández-Piñán, Pau Boher, Marçal Soler, Mercè Figueras, Olga Serra
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91677-3

Ethanol-guided behavior in Drosophila larvae
Cited by: 10
Author(s): Isabell Schumann, Michael L. Berger, Nadine Nowag, Yannick Schäfer, Juliane Saumweber, Henrike Scholz, Andreas S. Thum
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91555-y

Cyclotide host-defense tailored for species and environments in violets from the Canary Islands
Cited by: 9
Author(s): Błażej Ślązak, Klara Kaltenböck, Karin Steffen, Martyna Rogala, Priscila Rodríguez‐Rodríguez, Anna Nilsson, Mohammadreza Shariatgorji, Per E. Andrén, Ulf Göransson
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92168-1

Genome-wide scan reveals genetic divergence in Italian Holstein cows bred within PDO cheese production chains
Cited by: 6
Author(s): Michela Ablondi, M. Malacarne, Claudio Cipolat‐Gotet, J.B.C.H.M. van Kaam, A. Sabbioni, A. Summer
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92014-4

Machine learning algorithm improved automated droplet classification of ddPCR for detection of BRAF V600E in paraffin-embedded samples
Cited by: 4
Author(s): Gabriel Avelar Colozza‐Gama, Fabiano Callegari, Nikola Bešić, Ana Carolina de Jesus Paniza, Janete M. Cerutti
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92267-z

Efficacy of an automated laser for reducing wild bird visits to the free range area of a poultry farm
Cited by: 4
Author(s): A.R.W. Elbers, José L. Gonzáles
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91742-x

Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes
Cited by: 7
Author(s): Anna Esteve‐Codina, Thomas P. Hofer, Dorothe Burggraf, Marion Heiß-Neumann, Wolfgang Gesierich, Anne Boland, Robert Olaso, Marie-Thérèse Bihoreau, Jean‐François Deleuze, Winfried Moeller, Otmar Schmid, María Soler Artigas, Kathrin Renner, Jens M. Hohlfeld, Tobias Welte, Thomas Fuehner, Lukas Jerrentrup, Andreas Rembert Koczulla, Timm Greulich, Antje Prasse, Joachim Müller–Quernheim, Sumit Gupta, Christopher Brightling, Deepak Subramanian, David Parr, Umme Kolsum, Vandana Gupta, Imre Barta, Balázs Döme, J. Strausz, Mariarita Stendardo, Marco Piattella, Pierà Boschetto, Damian Korzybski, Dorota Górecka, Adam Nowiński, Marc Dabad, Marcos Fernández-Callejo, David Endesfelder, Wolfgang zu Castell, Pieter S. Hiemstra, Per Venge, Elfriede Noeßner, Thasso Griebel, Simon Heath, Dave Singh, Marta Gut, Loems Ziegler-Heitbrock
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91929-2

Exploring physicochemical and cytogenomic diversity of African cowpea and common bean
Cited by: 6
Author(s): Sílvia Catarino, Miguel Brilhante, Anyse Pereira Essoh, Alberto Bento Charrua, Josefa Rangel, Guilherme Roxo, Eromise Varela, Margarida Moldão, Ana I. Ribeiro‐Barros, Salomão Bandeira, Mónica Moura, Pedro Talhinhas, Maria M. Romeiras
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.01734

Maturation of the Human Immunoglobulin Heavy Chain Repertoire With Age
Cited by: 41
Author(s): Marie Ghraichy, Jacob D. Galson, Aleksandr Kovaltsuk, Valentin von Niederhäusern, Jana Pachlopnik Schmid, Mike Recher, Annaïse Jauch, Enkelejda Miho, Dominic F. Kelly, Charlotte Deane, Johannes Trück
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92979-2

Increased colonic expression of ACE2 associates with poor prognosis in Crohn’s disease
Cited by: 12
Author(s): Takahiko Toyonaga, Kenza C. Araba, Meaghan M. Kennedy, Benjamin Keith, Elisabeth A. Wolber, Caroline Beasley, Erin C. Steinbach, Matthew Schaner, Animesh Jain, Millie D. Long, Edward L. Barnes, Hans Herfarth, Kim L. Isaacs, Jonathan J. Hansen, Muneera R. Kapadia, José G. Guillem, Ajay Gulati, Praveen Sethupathy, Terrence S. Furey, Camille Ehré, Shehzad Z. Sheikh
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92854-0

Zebrafish behavior feature recognition using three-dimensional tracking and machine learning
Cited by: 5
Author(s): Peng Yang, Hiro Takahashi, Masataka Murase, Motoyuki Itoh
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91662-w

Concurrent mutations in RNA-dependent RNA polymerase and spike protein emerged as the epidemiologically most successful SARS-CoV-2 variant
Cited by: 36
Author(s): Sten Ilmjärv, Fabien Abdul, Silvia Acosta‐Gutiérrez, Carolina Estarellas, Ioannis Galdadas, Marina Casimir, Marco Alessandrini, Francesco Luigi Gervasio, Karl‐Heinz Krause
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92981-8

Holocene life and microbiome profiling in ancient tropical Lake Chalco, Mexico
Cited by: 4
Author(s): Bárbara Moguel, Liseth Pérez, Luis David Alcaraz, Jazmín Blaz, Margarita Caballero, Israel Muñoz‐Velasco, Arturo Becerra, Juan Pedro Laclette, Beatriz Ortega‐Guerrero, Claudia Romero-Oliva, Luis Herrera‐Estrella, Socorro Lozano‐García
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.609644

Prevotella histicola Protects From Arthritis by Expansion of Allobaculum and Augmenting Butyrate Production in Humanized Mice
Cited by: 41
Author(s): Baskar Balakrishnan, David Luckey, Rahul Bodhke, Jun Chen, Eric Marietta, Patricio Jeraldo, Joseph A. Murray, Veena Taneja
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93652-4

An evolutionary perspective on kin care directed up the generations
Cited by: 1
Author(s): Megan Arnot, Ruth Mace
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94601-x

Mapping socioeconomic inequalities in malaria in Sub-Sahara African countries
Cited by: 5
Author(s): Gabriel Carrasco-Escobar, Kimberly Fornace, Tarik Benmarhnia
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95048-w

Handler familiarity helps to improve working performance during novel situations in semi-captive Asian elephants
Cited by: 7
Author(s): Océane Liehrmann, Jennie A. H. Crawley, Martin W. Seltmann, Sherine Feillet, U Kyaw Nyein, Htoo Htoo Aung, Win Htut, Mirkka Lahdenperä, Léa Lansade, Virpi Lummaa
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92818-4

The early hunting dog from Dmanisi with comments on the social behaviour in Canidae and hominins
Cited by: 16
Author(s): Saverio Bartolini Lucenti, Joan Madurell‐Malapeira, Bienvenido Martı́nez-Navarro, Paul Palmqvist, David Lordkipanidze, Lorenzo Rook
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95357-0

Hybridization with mountain hares increases the functional allelic repertoire in brown hares
Cited by: 12
Author(s): Jaakko L. O. Pohjoismäki, Craig Michell, Riikka Levänen, Steve Smith
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94911-0

Evaluation of a high-throughput, cost-effective Illumina library preparation kit
Cited by: 4
Author(s): Eric S. Tvedte, Jane Michalski, Shaoji Cheng, Rayanna S. Patkus, Luke J. Tallon, Lisa Sadzewicz, Vincent M. Bruno, Joana C. Silva, David A. Rasko, Julie C. Dunning Hotopp
Software Mentions: 2
Published: over 3 years ago

10.1007/s00122-021-03786-2

Projecting results of zoned multi-environment trials to new locations using environmental covariates with random coefficient models: accuracy and precision
Cited by: 13
Author(s): Harimurti Buntaran, Johannes Forkman, Hans‐Peter Piepho
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2019.02963

Activation of Myd88-Dependent TLRs Mediates Local and Systemic Inflammation in a Mouse Model of Primary Sjögren's Syndrome
Cited by: 28
Author(s): Jeremy Kiripolsky, Rose‐Anne Romano, Eileen M. Kasperek, Yu Guan, Jill M. Kramer
Software Mentions: 2
Published: almost 5 years ago

10.7150/thno.32260

Human Mesenchymal Stem Cell-Treated Regulatory CD23+CD43+ B Cells Alleviate Intestinal Inflammation
Cited by: 47
Author(s): Xiaoyong Chen, Chuang Cai, Dijing Xu, Qiuli Liu, Shuwei Zheng, Longshan Liu, Gang Li, Xiaoran Zhang, Xiaoping Li, Yuanchen Ma, Li Huang, Jie-ying Chen, Jiahao Shi, Xin Du, Wenjie Xia, Andy Peng Xiang, Yanwen Peng
Software Mentions: 2
Published: almost 6 years ago

10.7150/thno.49864

Development and interpretation of a pathomics-based model for the prediction of microsatellite instability in Colorectal Cancer
Cited by: 94
Author(s): Rui Cao, Fan Yang, Si-Cong Ma, Li Liu, Yu Zhao, Yan Li, De‐Hua Wu, Tongxin Wang, Wei-Jia Lu, Weiping Cai, Hongbo Zhu, Xuejun Guo, Yuwen Lu, Junjie Kuang, Wenjing Huan, Weimin Tang, Kun Huang, Junzhou Huang, Jianhua Yao, Zhong‐Yi Dong
Software Mentions: 2
Published: almost 5 years ago

10.7150/thno.51154

Metabolomic profiling reveals amino acid and carnitine alterations as metabolic signatures in psoriasis
Cited by: 36
Author(s): Chao Chen, Guixue Hou, Chunwei Zeng, Yan Ren, Xiang Chen, Cong Peng
Software Mentions: 2
Published: almost 4 years ago

10.7150/thno.61810

Endothelial cell infection and dysfunction, immune activation in severe COVID-19
Cited by: 54
Author(s): Zhongnan Qin, Fengming Liu, Robert V Blair, Chenxiao Wang, Haoran Yang, Joseph C. Mudd, joshua M currey, Naoki Iwanaga, Jie He, Mengye Ren, Kun Han, Cecily C. Midkiff, Mohammad Afaque Alam, Bertal H. Aktas, Richard S. Vander Heide, Ronald S. Veazey, Giovanni Piedimonte, Nicholas J. Maness, Süleyman Ergün, Franck Mauvais-Jarvis, Jay Rappaport, Jay K. Kolls, Xuebin Qin
Software Mentions: 2
Published: almost 4 years ago

10.1128/mBio.01977-19

Comparative Genomics of Antibiotic-Resistant Uropathogens Implicates Three Routes for Recurrence of Urinary Tract Infections
Cited by: 56
Author(s): Robert Thänert, Kimberly A. Reske, Tiffany Hink, Meghan A. Wallace, Bin Wang, Drew J. Schwartz, Sondra Seiler, Candice Cass, Carey‐Ann D. Burnham, Erik R. Dubberke, Jennie H. Kwon, Gautam Dantas
Software Mentions: 2
Published: over 5 years ago

10.1089/thy.2020.0307

Limitations of Detecting Genetic Variants from the RNA Sequencing Data in Tissue and Fine-Needle Aspiration Samples
Cited by: 15
Author(s): Cihan Kaya, Princesca Dorsaint, Stephanie Mercurio, Alexander M Campbell, Kenneth Eng, Marina N. Nikiforova, Olivier Elemento, Andrea Sboner
Software Mentions: 2
Published: over 3 years ago

10.3389/fnhum.2021.626406

Modulation of Peak Alpha Frequency Oscillations During Working Memory Is Greater in Females Than Males
Cited by: 5
Author(s): Tara Renee Ghazi, Kara J. Blacker, Thomas Hinault, Susan Courtney
Software Mentions: 2
Published: over 3 years ago

10.3390/toxins8090256

Presence of the Cyanotoxin Microcystin in Arctic Lakes of Southwestern Greenland
Cited by: 18
Author(s): Jessica V. Trout‐Haney, Zachary T. Wood, Kathryn L. Cottingham
Software Mentions: 2
Published: over 8 years ago

10.3390/toxins11060319

Deoxynivalenol-3-Glucoside Content Is Highly Associated with Deoxynivalenol Levels in Two-Row Barley Genotypes of Importance to Canadian Barley Breeding Programs
Cited by: 21
Author(s): James R. Tucker, Ana Badea, Richard Blagden, Kerri Pleskach, Sheryl A. Tittlemier, W. G. Dilantha Fernando
Software Mentions: 2
Published: over 5 years ago

10.3390/toxins11070420

Fire Ant Venom Alkaloids Inhibit Biofilm Formation
Cited by: 14
Author(s): Danielle B. Carvalho, Eduardo Gonçalves Paterson Fox, Diogo Gama dos Santos, Joab Sampaio de Sousa, Denise Maria Guimarães Freire, Fábio César Sousa Nogueira, Gilberto B. Domont, Lívia Vieira Araujo de Castilho, Ednildo A. Machado
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2014.00404

Rubber hand illusion induced by touching the face ipsilaterally to a deprived hand: evidence for plastic â€œsomatotopicâ€ remapping in tetraplegics
Cited by: 39
Author(s): Michele Scandola, Emmanuele Tidoni, Renato Avesani, G Brunelli, Salvatore Maria Aglioti, Valentina Moro
Software Mentions: 2
Published: over 10 years ago

10.3390/toxins12020101

In Vitro Rumen Simulations Show a Reduced Disappearance of Deoxynivalenol, Nivalenol and Enniatin B at Conditions of Rumen Acidosis and Lower Microbial Activity
Cited by: 29
Author(s): Sandra Debevere, An Cools, Siegrid De Baere, Geert Haesaert, Michael Rychlik, Siska Croubels, Veerle Fievez
Software Mentions: 2
Published: almost 5 years ago

10.3390/toxins12060405

Evaluation of the Efficacy of Mycotoxin Modifiers and Mycotoxin Binders by Using an In Vitro Rumen Model as a First Screening Tool
Cited by: 10
Author(s): Sandra Debevere, Dian Schatzmayr, Nicole Reisinger, Markus Aleschko, Geert Haesaert, Michael Rychlik, Siska Croubels, Veerle Fievez
Software Mentions: 2
Published: over 4 years ago

10.3390/toxins12090553

A Functional ClpXP Protease is Required for Induction of the Accessory Toxin Genes, tst, sed, and sec
Cited by: 8
Author(s): Jenny Schelin, Marianne Thorup Cohn, Barbro Frisk, Dorte Frees
Software Mentions: 2
Published: over 4 years ago

10.3390/toxins13080509

Differing Effects of Vinegar on Pelagia noctiluca (Cnidaria: Scyphozoa) and Carybdea marsupialis (Cnidaria: Cubozoa) Stings—Implications for First Aid Protocols
Cited by: 7
Author(s): Ainara Ballesteros, Macarena Marambio, Verónica Fuentes, Mridvika Narda, Andreu Santín, Josep-Marı́a Gili
Software Mentions: 2
Published: over 3 years ago

10.1016/j.gpb.2020.12.004

Large-scale Proteomic and Phosphoproteomic Analyses of Maize Seedling Leaves During De-etiolation
Cited by: 11
Author(s): Zili Gao, Zhuo Shen, Qing Chao, Zhen Yan, Xuan-Liang Ge, Tian-Cong Lu, Haiyan Zheng, Chunrong Qian, Bai-Chen Wang
Software Mentions: 2
Published: over 4 years ago

10.1007/s11357-021-00443-w

Serological and viral genetic features of patients with COVID-19 in a selected German patient cohort—correlation with disease characteristics
Cited by: 4
Author(s): Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Folker Wenzel, Holger Herbeck, J. Blessing, Peter Schierack, Stefan Rödiger, Dirk Roggenbuck
Software Mentions: 2
Published: over 3 years ago

10.1186/s13742-015-0051-z

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
Cited by: 142
Author(s): Andy Kilianski, Jamie Haas, Elizabeth J Corriveau, Alvin T. Liem, Kristen L. Willis, Dana R Kadavy, C. Nicole Rosenzweig, Samuel S. Minot
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/gix029

Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive
Cited by: 9
Author(s): Toshio Ohta, Takeru Nakazato, Hidemasa Bono
Software Mentions: 2
Published: over 7 years ago

10.3390/toxins13090652

Validation and Application of a Low-Cost Sorting Device for Fumonisin Reduction in Maize
Cited by: 4
Author(s): William C. Stafstrom, Julie A. Wushensky, John Fuchs, Wenwei Xu, Nnenna Ezera, Rebecca Nelson
Software Mentions: 2
Published: about 3 years ago

10.1186/s13073-020-00802-w

Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2
Cited by: 50
Author(s): Jason Nomburg, Matthew Meyerson, James A. DeCaprio
Software Mentions: 2
Published: about 4 years ago

10.1186/s13073-020-00727-4

Clinical and molecular characterization of virus-positive and virus-negative Merkel cell carcinoma
Cited by: 59
Author(s): Gabriel J. Starrett, Manisha Thakuria, Tianqi Chen, Christina Marcelus, Jingwei Cheng, Jason Nomburg, Aaron R. Thorner, Michael K. Slevin, Winslow Powers, Robert T. Burns, Caitlin E Perry, Adriano Piris, Frank C. Kuo, Guilherme Rabinowits, Anita Giobbie‐Hurder, Laura E. MacConaill, James A. DeCaprio
Software Mentions: 2
Published: over 4 years ago

10.1093/gigascience/giz093

An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia
Cited by: 13
Author(s): Wenkui Dai, Heping Wang, Qian Zhou, Dongfang Li, Xin Feng, Zhenyu Yang, Wenjian Wang, Chuangzhao Qiu, Zhiwei Lü, Ximing Xu, Mengxuan Lyu, Guoli Xie, Yinhu Li, Yanmin Bao, Yanhong Liu, Kunling Shen, Kaihu Yao, Xikang Feng, Yonghong Yang, Ke Zhou, Shuai Cheng Li, Yuejie Zheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-019-0613-2

Prioritizing putative influential genes in cardiovascular disease susceptibility by applying tissue-specific Mendelian randomization
Cited by: 26
Author(s): Kenneth B. Taylor, George Davey Smith, Caroline L Relton, Tom R. Gaunt, Tom G Richardson
Software Mentions: 2
Published: almost 6 years ago

10.1093/gigascience/giaa083

The intersectional genetics landscape for humans
Cited by: 1
Author(s): André Macedo, Alisson M. Gontijo
Software Mentions: 2
Published: over 4 years ago

10.3389/fmolb.2021.682134

A Comparison of Serum and Plasma Blood Collection Tubes for the Integration of Epidemiological and Metabolomics Data
Cited by: 29
Author(s): Jennie Sotelo-Orozco, Shin-Yu Chen, Irva Hertz‐Picciotto, Carolyn M. Slupsky
Software Mentions: 2
Published: over 3 years ago

10.1080/19490976.2020.1865706

Bacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice
Cited by: 65
Author(s): Inmaculada López-Almela, Marina Romaní-Pérez, Clara Bullich-Vilarrubias, Alfonso Benı́tez-Páez, Eva M. Gómez del Pulgar, Rubén Francés, Gerhard Liebisch, Yolanda Sanz
Software Mentions: 2
Published: almost 4 years ago

10.1080/19490976.2021.1972746

Ursolic acid reverses liver fibrosis by inhibiting NOX4/NLRP3 inflammasome pathways and bacterial dysbiosis
Cited by: 27
Author(s): Yuan Nie, Qi Liu, Wang Zhang, Yipeng Wan, Chia-Chi Flora Huang, Xuan Zhu
Software Mentions: 2
Published: almost 4 years ago

10.1080/19490976.2021.1980348

Two ST11 Klebsiella pneumoniae strains exacerbate colorectal tumorigenesis in a colitis-associated mouse model
Cited by: 9
Author(s): Ming-Ko Chiang, Pei-Yi Hsiao, Yen‐Yi Liu, Huiling Tang, Chien-Shun Chiou, Min-Chi Lu, Yiming Lai
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13099-016-0124-2

Gut microbiome alterations in patients with stage 4 hepatitis C
Cited by: 98
Author(s): Abdelrahman Mahmoud, AbdelReheem Adel, Ahmed O. El-Gendy, Tamer Essam, Ramy K. Aziz
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.695445

Effects of Dietary Energy Levels on Rumen Fermentation, Gastrointestinal Tract Histology, and Bacterial Community Diversity in Fattening Male Hu Lambs
Cited by: 12
Author(s): Qiye Wang, Yutong Zeng, Xiangfang Zeng, Xin Wang, Yancan Wang, Chunpeng Dai, Jianzhong Li, Pengfei Huang, Jing Huang, Tarique Hussain, Mingzhi Zhu, Huansheng Yang
Software Mentions: 2
Published: about 3 years ago

10.1016/j.healthplace.2015.08.001

The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam
Cited by: 28
Author(s): Corinne N. Thompson, Jon Zelner, Tran Do Hoang Nhu, My V. T. Phan, Phuc Le, Hùng Nguyễn Thanh, Vu Thuy Duong, Ngoc Minh Nguyen, Ha Manh Tuan, Tu Van Hoang Minh, Vi Lu Lan, Chau Nguyen Van Vinh, Hien Tran Tinh, Emmiliese von Clemm, Harry Storch, Guy Thwaites, Bryan T. Grenfell, Stephen Baker
Software Mentions: 2
Published: over 9 years ago

10.3390/healthcare9060689

Understanding Contextual Factors Effects and Their Implications for Italian Physiotherapists: Findings from a National Cross-Sectional Study
Cited by: 7
Author(s): Mattia Bisconti, Davide Venturin, Alessandra Bianco, Valentina Capurso, Giuseppe Giovannico
Software Mentions: 2
Published: over 3 years ago

10.1016/j.heliyon.2021.e07111

Sociodemographic factors and early marriage among women in Bangladesh, Ghana and Iraq: An illustration from Multiple Indicator Cluster Survey
Cited by: 16
Author(s): Ahmed Abdus Saleh Saleheen, Sharmin Afrin, Samia Kabir, Md. Jakaria Habib, Maliha Afroj Zinnia, Md. Ismail Hossain, Iqramul Haq, Ashis Talukder
Software Mentions: 2
Published: over 3 years ago

10.1016/j.heliyon.2020.e05435

A nonparametric framework for inferring orders of categorical data from category-real pairs
Cited by: 5
Author(s): Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, Suttipong Thajchayapong
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.00405

Metabolic Adaptation of Methanogens in Anaerobic Digesters Upon Trace Element Limitation
Cited by: 47
Author(s): Babett Wintsche, Nico Jehmlich, Denny Popp, Hauke Harms, Sabine Kleinsteuber
Software Mentions: 1
Published: over 6 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.02454

The Developmental Stage Symbionts of the Pea Aphid-Feeding Chrysoperla sinica (Tjeder)
Cited by: 19
Author(s): Chenchen Zhao, Hui Zhao, Shuai Zhang, Junyu Luo, Xiangzhen Zhu, Li Wang, Peng Zhao, Hongxia Hua, Jinjie Cui
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-021-01213-0

1q21.1 distal copy number variants are associated with cerebral and cognitive alterations in humans
Cited by: 23
Author(s): Ida Elken Sønderby, Dennis van der Meer, Clara Moreau, Tobias Kaufmann, G. Bragi Walters, Maria Ellegaard, Abdel Abdellaoui, David Ames, Katrin Amunts, Micael Andersson, Nicola J. Armstrong, Manon Bernard, Nicholas B. Blackburn, John Blangero, Dorret I. Boomsma, Henry Brodaty, Rachel M. Brouwer, Robin Bülow, Rune Bøen, Wiepke Cahn, Vince D. Calhoun, Svenja Caspers, Christopher R. K. Ching, Sven Cichon, Simone Ciufolini, Benedicto Crespo‐Facorro, Joanne E. Curran, Anders M. Dale, Shareefa Dalvie, Paola Dazzan, Eco J. C. de Geus, Greig I. de Zubicaray, Sonja M C de Zwarte, Sylvane Desrivières, Joanne L. Doherty, Gary Donohoe, Bogdan Draganski, Stefan Ehrlich, Else Eising, Thomas Espeseth, Kim Fejgin, Simon E. Fisher, Tormod Fladby, Oleksandr Frei, Vincent Frouin, Masaki Fukunaga, Thomas Gareau, Tian Ge, David C. Glahn, Hans J. Grabe, Nynke A. Groenewold, Ómar Gústafsson, Jan Haavik, Asta Håberg, Jérémy Hall, Ryota Hashimoto, Jayne Y. Hehir-Kwa, Derrek P. Hibar, Manon H. J. Hillegers, Per Hoffmann, Laurena Holleran, Avram J. Holmes, Georg Homuth, Jouke‐Jan Hottenga, Hilleke E. Hulshoff Pol, Masashi Ikeda, Neda Jahanshad, Christiane Jockwitz, Stefan Johansson, Erik G. Jönsson, Niklas Rye Jørgensen, Masataka Kikuchi, Emma Knowles, Kuldeep Kumar, Stéphanie Le Hellard, Costin Leu, David Linden, Jingyu Liu, Arvid Lundervold, Anne Maillard, Nicholas G. Martin, Sandra Martin‐Brevet, Karen A. Mather, Samuel R. Mathias, Katie L. McMahon, Allan F. McRae, Sarah E. Medland, Andreas Meyer‐Lindenberg, Torgeir Moberget, Claudia Modenato, Jennifer Monereo Sánchez, Derek W. Morris, Thomas W. Mühleisen, Robin M. Murray, Jacob Nielsen, Jan Egil Nordvik, Lars Nyberg, Loes Olde Loohuis, Roel A. Ophoff, Michael John Owen, Tomáš Paus, Zdenka Pausová, Juan M. Peralta, G. Bruce Pike, Carlos Prieto, Erin Burke Quinlan, Céline S. Reinbold, Tiago Reis Marques, James Rucker, Perminder S. Sachdev, Sigrid Botne Sando, Peter R. Schofield, Andrew J. Schork, Gunter Schümann, Jean Shin, Elena Shumskaya, Ana Isabel Silva, Sanjay M. Sisodiya, Vidar M. Steen, Dan J. Stein, Lachlan T. Strike, Ikuo Suzuki, Christian K. Tamnes, Alexander Teumer, Anbupalam Thalamuthu, Diana Tordesillas‐Gutiérrez, Anne Uhlmann, Magnus O. Ulfarsson, Dennis van ‘t Ent, Marianne B. M. van den Bree, Pierre Vanderhaeghen, Evangelos Vassos, Wen Wang, Katharina Wittfeld, Margaret J. Wright, Ingrid Agartz, Srdjan Djurovic, Lars T. Westlye, Hreinn Stefánsson, Kāri Stefánsson, Sébastien Jacquemont, Paul M. Thompson, Ole A. Andreassen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.02018

Increasing Temperature and Microplastic Fibers Jointly Influence Soil Aggregation by Saprobic Fungi
Cited by: 54
Author(s): Yun Liang, Anika Lehmann, Max‐Bernhard Ballhausen, Ludo A. H. Muller, Matthias C. Rillig
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.01360

Inhibiting DNA Methylation Improves Survival in Severe Sepsis by Regulating NF-κB Pathway
Cited by: 26
Author(s): Luxi Cao, Tingting Zhu, Xiabing Lang, Jingquan Sha, Yi Yang, Chaohong Zhu, Yucheng Wang, Shi Feng, Cuili Wang, Ping Zhang, Jianghua Chen, Hong Jiang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62476-z

Characterisation of the dynamic nature of lipids throughout the lifespan of genetically identical female and male Daphnia magna
Cited by: 4
Author(s): Julia K. Constantinou, Andrew D. Southam, Jouni Kvist, Steven J.M. Jones, Mark R. Viant, Leda Mirbahai
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62187-5

Human health risk assessment of elevated and variable iron and manganese intake with arsenic-safe groundwater in Jashore, Bangladesh
Cited by: 71
Author(s): Gopal Chandra Ghosh, Md. Jahed Hassan Khan, Tapos Kumar Chakraborty, Samina Zaman, A. H. M. Enamul Kabir, Hiroaki Tanaka
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-89007-8

Early detection of language categories in face perception
Cited by: 6
Author(s): Cristina Baus, Elisa Ruiz-Tada, Carles Escera, Albert Costa
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-62189-3

Integrative analyses indicate an association between ITIH3 polymorphisms with autism spectrum disorder
Cited by: 5
Author(s): Xinyan Xie, Heng Meng, Hao Wu, Fang Hou, Yanlin Chen, Yu Zhou, Xue Qin, Jiajia Zhang, Jianhua Gong, Li Li, Ranran Song
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.00637

Assessing Population Diversity of Brettanomyces Yeast Species and Identification of Strains for Brewing Applications
Cited by: 20
Author(s): Marc Serra Colomer, Anna Chailyan, Ross T. Fennessy, Kim Friis Olsson, Lea G. Johnsen, Natalia Solodovnikova, Jochen Förster
Software Mentions: 1
Published: over 4 years ago

10.1016/j.tranon.2018.08.006

Somatic TP53 Mutations Are Detectable in Circulating Tumor DNA from Children with Anaplastic Wilms Tumors
Cited by: 20
Author(s): Taryn D. Treger, Tasnim Chagtai, Robert Butcher, George D Cresswell, Reem Al‐Saadi, Jesper Brok, Richard D. Williams, Chrissy h. Roberts, Nicholas M. Luscombe, Kathy Pritchard‐Jones, William Mifsud
Software Mentions: 1
Published: about 6 years ago

10.1038/srep17066

Tumor-selective use of DNA base excision repair inhibition in pancreatic cancer using the NQO1 bioactivatable drug, β-lapachone
Cited by: 47
Author(s): Gaurab Chakrabarti, Molly A. Silvers, Mariya Ilcheva, Yuliang Liu, Zachary Moore, Xuelian Luo, Jinming Gao, Glenda G. Anderson, Huan Liu, Venetia Sarode, David E. Gerber, Sandeep Burma, Ralph J. DeBerardinis, Stanton L. Gerson, David A. Boothman
Software Mentions: 1
Published: about 9 years ago

10.1002/jbm4.10531

<scp>CRISPR‐Cas9</scp> –Mediated Genome Editing Confirms <scp> EPDR1 </scp> as an Effector Gene at the <scp>BMD GWAS</scp> ‐Implicated ‘ <scp> STARD3NL </scp> ’ Locus
Cited by: 2
Author(s): James A. Pippin, Alessandra Chesi, Yadav Wagley, Chun Su, Matthew C Pahl, Kenyaita M. Hodge, Matthew E. Johnson, Andrew D. Wells, Kurt D. Hankenson, Struan F.A. Grant
Software Mentions: 1
Published: over 3 years ago

10.1001/jamapsychiatry.2021.0380

Association of Age, Antipsychotic Medication, and Symptom Severity in Schizophrenia With Proton Magnetic Resonance Spectroscopy Brain Glutamate Level
Cited by: 60
Author(s): Kate Merritt, Philip McGuire, Alice Egerton, H-Mrs in Schizophrenia Investigators, André Alemán, Wolfgang Block, Oswald Bloemen, Faith Borgan, Juan Bustillo, Arístides A. Capizzano, Jennifer M. Coughlin, Camilo de la Fuente‐Sandoval, Arsime Demjaha, Kara Dempster, Kim Q., Fei Du, Peter Falkai, Beata Galińska-Skok, Jürgen Gallinat, Charles Gasparovic, Cedric E. Ginestet, Naoki Gotō, Ariel Graff‐Guerrero, Beng-Choon Ho, Oliver Howes, Sameer Jauhar, Peter Jeon, Takeshi Kato, Charles A. Kaufmann, Lawrence S. Kegeles, Matcheri S. Keshavan, Sang-Young Kim, Hiroshi Kunugi, John Lauriello, Edith J. Liemburg, Meghan McIlwain, Gemma Modinos, Elias Mouchlianitis, Jun Nakamura, Igor Nenadić, Döst Öngür, Miho Ota, Lena Palaniyappan, Christos Pantelis, Eric Plitman, Sotirios Posporelis, Scot E. Purdon, Jürgen R. Reichenbach, Perry F. Renshaw, Bruce Russell, Akira Sawa, Martin Schaefer, Dikoma C. Shungu, Stefan Smesny, Jeffrey A. Stanley, James Stone, Agata Szulc, Reggie Taylor, Katharine N. Thakkar, Jean Théberge, Philip G. Tibbo, Thérèse van Amelsvoort, Jerzy Walecki, Peter Williamson, Stephen Wood, Lijing Xin, Hidenori Yamasue
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-89440-9

Evolution of Old World Equus and origin of the zebra-ass clade
Cited by: 19
Author(s): Omar Cirilli, Luca Pandolfi, Lorenzo Rook, Raymond L. Bernor
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.684092

Complete Genome Sequence of Xylella taiwanensis and Comparative Analysis of Virulence Gene Content With Xylella fastidiosa
Cited by: 6
Author(s): Ling-Wei Weng, Yuchen Lin, Chiou-Chu Su, Cheng Tung Huang, Shu-Ting Cho, Aiping Chen, Shu‐Jen Chou, Chang‐Her Tsai, Chih-Horng Kuo
Software Mentions: 1
Published: over 3 years ago

10.1001/jamanetworkopen.2021.10775

Medication Use Patterns in Hospitalized Patients With COVID-19 in California During the Pandemic
Cited by: 16
Author(s): Jonathan H. Watanabe, Jimmy Kwon, Bin Nan, Shira R. Abeles, Stanley Jia, Sanjay R. Mehta
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-60504-6

Western gorilla space use suggests territoriality
Cited by: 10
Author(s): Robin E. Morrison, Jacob C. Dunn, Germán Illera, Peter Walsh, Magdalena Bermejo
Software Mentions: 1
Published: over 4 years ago

10.1001/jamanetworkopen.2021.7269

Association of Adherence to Surfactant Best Practice Uses With Clinical Outcomes Among Neonates in Sweden
Cited by: 14
Author(s): Pontus Challis, Per Nydert, Stellan Håkansson, Mikael Norman
Software Mentions: 1
Published: over 3 years ago

10.1186/s13005-018-0174-4

Assessing the effect of multibracket appliance treatment on tooth color by using electronic measurement
Cited by: 2
Author(s): Anja Ratzmann, Ch. Schwahn, Anja Treichel, Andreas Faltermeier, Alexander Welk
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-61050-x

Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data
Cited by: 3
Author(s): Ana Neves, Alberto Vieira, Vera Sequeira, Rafaela Barros Paiva, Leonel Serrano Gordo, Octávio S. Paulo
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60505-5

A Markov chain method for counting and modelling migraine attacks
Cited by: 6
Author(s): Mathias Barra, Fredrik A. Dahl, Kjersti Grøtta Vetvik, Anne MacGregor
Software Mentions: 1
Published: almost 5 years ago

10.1001/jamanetworkopen.2021.4732

Comparison of Clinical Characteristics Between Clinical Trial Participants and Nonparticipants Using Electronic Health Record Data
Cited by: 16
Author(s): James R. Rogers, Cong Liu, George Hripcsak, Ying Kuen Cheung, Chunhua Weng
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.03243-19

Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults
Cited by: 46
Author(s): Philip Meade, Guillermina Kuan, Shirin Strohmeier, Hannah E. Maier, Fatima Amanat, Ángel Balmaseda, Kimihito Ito, Ericka Kirkpatrick, Andres Javier, Lionel Gresh, Raffael Nachbagauer, Aubree Gordon, Florian Krammer
Software Mentions: 1
Published: almost 5 years ago

10.1002/hsr2.393

Standalone sauna vs exercise followed by sauna on cardiovascular function in non‐naïve sauna users: A comparison of acute effects
Cited by: 3
Author(s): Earric Lee, Joel Kostensalo, Peter Willeit, Setor K Kunutsor, Tanjaniina Laukkanen, Francesco Zaccardi, Hassan Khan, Jari A Laukkanen
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-60565-7

Type 2 diabetes mellitus compromises the survival of diffuse large B-cell lymphoma patients treated with (R)-CHOP – the PLRG report
Cited by: 9
Author(s): Joanna Drozd-Sokołowska, Jan Maciej Zaucha, Przemysław Biecek, Agnieszka Giza, Katarzyna Kobylińska, Monika Joks, Tomasz Wróbel, Beata Kumiega, Wanda Knopińska‐Posłuszny, Wojciech Spychałowicz, Joanna Romejko‐Jarosińska, Joanna Fischer, W Wiktor-Jedrzejczak, Monika Długosz‐Danecka, Sebastian Giebel, Wojciech Jurczak
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-89913-x

End-tidal to arterial carbon dioxide gradient is associated with increased mortality in patients with traumatic brain injury: a retrospective observational study
Cited by: 10
Author(s): Pascal Doppmann, Lorenz Meuli, Stephen J. M. Sollid, Miodrag Filipovic, Jürgen Knapp, Aristomenis K. Exadaktylos, Roland Albrecht, Urs Pietsch
Software Mentions: 1
Published: over 3 years ago

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