cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/genes12071055

Signatures of Transcription Factor Evolution and the Secondary Gain of Red Algae Complexity
Cited by: 7
Author(s): Romy Petroll, Mona Schreiber, Hermann Finke, J. Mark Cock, Sven B. Gould, Stefan A. Rensing
Software Mentions: 2
Published: about 5 years ago

10.1042/BSR20181485

Combination of transcriptome sequencing and iTRAQ proteome reveals the molecular mechanisms determining petal shape in herbaceous peony (Paeonia lactiflora Pall.)
Cited by: 10
Author(s): Yanqing Wu, Yuhan Tang, Jingquan Yu, Daqiu Zhao, Jiali Shang, Jun Tao
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20201384

Prognostic and immune regulating roles of YIF1B in Pan-Cancer: a potential target for both survival and therapy response evaluation
Cited by: 12
Author(s): Jun Liu, Zheng Chen, Pingsen Zhao, Wenli Li
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-25201-5

Chromosomal barcoding as a tool for multiplexed phenotypic characterization of laboratory evolved lineages
Cited by: 18
Author(s): Leonie Johanna Jahn, Andreas Porse, Christian Munck, Daniel Simon, Svetlana Volkova, Morten Otto Alexander Sommer
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0195771

High-resolution temporal and regional mapping of MAPT expression and splicing in human brain development
Cited by: 55
Author(s): Marco M. Hefti, Kurt Farrell, SoongHo Kim, Kathryn R. Bowles, Mary Fowkes, Towfique Raj, John F. Crary
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.5507

Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing
Cited by: 17
Author(s): Monia Teresa Russo, Riccardo Aiese Cigliano, Walter Sanseverino, Maria Immacolata Ferrante
Software Mentions: 2
Published: almost 8 years ago

10.1042/BSR20192048

Expression profiles of genes associated with inflammatory responses and oxidative stress in lung after heat stroke
Cited by: 11
Author(s): Zhaoyu Liu, Jitao Chen, La Hu, Ming Li, Min Liang, Jianan Chen, Hai Lin, Zicheng Zeng, Weilun Yin, Zhijie Dong, Jian Weng, Wenqian Yao, Yi Gao
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20200316

HN1 as a diagnostic and prognostic biomarker for liver cancer
Cited by: 5
Author(s): Zhicheng Liu, Dingquan Yang, Yanqing Li, Yan Jiao, Guangchao Lv
Software Mentions: 2
Published: about 6 years ago

10.1042/BSR20194429

Identification of cell division cycle 20 as a candidate biomarker and potential therapeutic target in bladder cancer using bioinformatics analysis
Cited by: 4
Author(s): Peilin Shen, Xue‐Jun He, Lan Lin, Ying‐Kai Hong, Mingen Lin
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-22493-5

A Five-microRNA Signature for Survival Prognosis in Pancreatic Adenocarcinoma based on TCGA Data
Cited by: 37
Author(s): Xiuhui Shi, Li Xu, Hang Zhang, Ruizhi He, Yan Zhao, Min Zhou, Shutao Pan, Chunle Zhao, Yechen Feng, Min Wang, Xiaomao Guo, Renyi Qin
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2018.00484

Unraveling the Host Plant Alternation of Cacopsylla pruni – Adults but Not Nymphs Can Survive on Conifers Due to Phloem/Xylem Composition
Cited by: 27
Author(s): Jannicke Gallinger, Jürgen Gross
Software Mentions: 2
Published: over 8 years ago

10.3390/genes12081182

Set1 Targets Genes with Essential Identity and Tumor-Suppressing Functions in Planarian Stem Cells
Cited by: 2
Author(s): Prince Verma, Courtney K. M. Waterbury, Elizabeth M. Duncan
Software Mentions: 2
Published: about 5 years ago

10.1042/BSR20204086

Identification of immune-related lncRNAs to improve the prognosis prediction for patients with papillary thyroid cancer
Cited by: 11
Author(s): Zhiyang Li, Weixun Lin, Jiehua Zheng, Weida Hong, Juan Zou, Taofeng Zhang, Yexi Chen, Hai Lü
Software Mentions: 2
Published: over 5 years ago

10.1186/s12917-019-1993-7

Comparison of gut microbiota diversity between wild and captive bharals (Pseudois nayaur)
Cited by: 26
Author(s): Xiaowei Chi, Hongmei Gao, Guosheng Wu, Wen Qin, Pengfei Song, Lei Wang, Jiarui Chen, Zhenyuan Cai, Tongzuo Zhang
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-26172-3

A correlative and quantitative imaging approach enabling characterization of primary cell-cell communication: Case of human CD4+ T cell-macrophage immunological synapses
Cited by: 2
Author(s): Richard Kasprowicz, Emma Rand, Peter O’Toole, Nathalie Signoret
Software Mentions: 2
Published: over 8 years ago

10.1093/infdis/jiab147

Human Rhinovirus Infection Blocks Severe Acute Respiratory Syndrome Coronavirus 2 Replication Within the Respiratory Epithelium: Implications for COVID-19 Epidemiology
Cited by: 105
Author(s): Kieran Dee, Daniel Goldfarb, Joanne Haney, Julien A R Amat, Vanessa Herder, Meredith Stewart, Agnieszka M. Szemiel, Marc Baguelin, Pablo R. Murcia
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.585836

Adaptation to Aquatic and Terrestrial Environments in Chlorella vulgaris (Chlorophyta)
Cited by: 11
Author(s): Siegfried Aigner, Karin Glaser, Erwann Arc, Andreas Holzinger, Michael Schletter, Ulf Karsten, Ilse Kranner
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-23502-3

Using spatial mark-recapture for conservation monitoring of grizzly bear populations in Alberta
Cited by: 25
Author(s): John Boulanger, Scott E. Nielsen, Gordon B. Stenhouse
Software Mentions: 2
Published: over 8 years ago

10.1186/s12917-019-1988-4

Characterization of functional traits with focus on udder health in heifers with divergent paternally inherited haplotypes on BTA18
Cited by: 11
Author(s): A. Heimes, J. Brodhagen, Rosemarie Weikard, H.M. Hammon, M. Meyerholz, Wolfram Petzl, Holm Zerbe, Susanne Engelmann, Marion Schmicke, Martina Hoedemaker, H. J. Schuberth, Christa Kühn
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0158528

Impaired Granuloma Formation in Sepsis: Impact of Monocytopenia
Cited by: 5
Author(s): Julie Alingrin, Benjamin Coiffard, Julien Textoris, P. Bélénotti, Aurélie Daumas, Marc Léone, Jean‐Louis Mège
Software Mentions: 2
Published: about 10 years ago

10.1007/s13280-018-1070-7

Managing geese with recreational hunters?
Cited by: 5
Author(s): James H. Williams, Thorsten J. S. Balsby, Helle Ørsted Nielsen, Tommy Asferg, Jesper Madsen
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-26947-8

Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens
Cited by: 37
Author(s): Fiona Paul, Jürgen Otte, Imke Schmitt, Francesco Dal Grande
Software Mentions: 2
Published: about 8 years ago

10.1007/s13280-017-0904-z

Examining adaptations to water stress among farming households in Sri Lanka’s dry zone
Cited by: 15
Author(s): Nigel Williams, Amanda R. Carrico
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-27566-z

Biomimetic post-capillary venule expansions for leukocyte adhesion studies
Cited by: 9
Author(s): Bryan L. Benson, Lucy Li, Jay Myers, Rodney Dixon Dorand, Umut A. Gürkan, Alex Y. Huang, Richard M. Ransohoff
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2020.00625

Genome-Wide Association Study Reveals the Genetic Architecture of Stripe Rust Resistance at the Adult Plant Stage in Chinese Endemic Wheat
Cited by: 6
Author(s): Jing Li, Yunfeng Jiang, Fangjie Yao, Long Li, Yuqi Wang, Yu Wu, Hao Li, Jirui Wang, Qiantao Jiang, Houyang Kang, Wei Li, Pengfei Qi, Jian Ma, Zhien Pu, Shoufen Dai, Yuming Wei, Youliang Zheng, Guoyue Chen
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-26768-9

RETRACTED ARTICLE: The Na/K-ATPase Oxidant Amplification Loop Regulates Aging
Cited by: 28
Author(s): Komal Sodhi, Alexandra Nichols, Amrita Mallick, Rebecca L. Klug, Jiang Liu, Xiaoliang Wang, Krithika Srikanthan, Perrine Goguet-Rubio, Athar Nawab, Rebecca Pratt, Megan N. Lilly, Juan Sanabria, Zijian Xie, Nader G. Abraham, Joseph I. Shapiro
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-28048-y

Butyrate produced by gut commensal bacteria activates TGF-beta1 expression through the transcription factor SP1 in human intestinal epithelial cells
Cited by: 124
Author(s): Camille Martin-Gallausiaux, Fabienne Béguet-Crespel, Ludovica Marinelli, Alexandre Jamet, Florence Ledue, Hervé M. Blottière, Nicolas Lapaque
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-28091-9

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin
Cited by: 86
Author(s): Allison E. Mann, Susanna Sabin, Kirsten A. Ziesemer, Åshild J. Vågene‬, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar‐García, Bruno Fröhlich, Mark Aldenderfer, Menno L. P. Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis, Johannes Krause, Corinne L. Hofman, Kirsten I. Bos, Christina Warinner
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms22126424

(S)-Reutericyclin: Susceptibility Testing and In Vivo Effect on Murine Fecal Microbiome and Volatile Organic Compounds
Cited by: 2
Author(s): Bernhard Kienesberger, Beate Obermüller, Georg Singer, Barbara Mittl, Reingard Grabherr, Sigrid Mayrhofer, Stefan Heinl, Vanessa Stadlbauer, Angela Horvath, Wolfram Miekisch, Patricia Fuchs, Ingeborg Klymiuk, Holger Till, Christoph Castellani
Software Mentions: 2
Published: about 5 years ago

10.1186/s13073-019-0613-2

Prioritizing putative influential genes in cardiovascular disease susceptibility by applying tissue-specific Mendelian randomization
Cited by: 26
Author(s): Kenneth B. Taylor, George Davey Smith, Caroline L Relton, Tom R. Gaunt, Tom G Richardson
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0191720

Environmental DNA (eDNA): A tool for quantifying the abundant but elusive round goby (Neogobius melanostomus)
Cited by: 65
Author(s): Meredith B. Nevers, Muruleedhara N. Byappanahalli, Charles Morris, Dawn A. Shively, Katarzyna Przybyla‐Kelly, Ashley M. Spoljaric, Joshua Dickey, Edward F. Roseman
Software Mentions: 2
Published: over 8 years ago

10.1186/s12917-018-1711-x

Aspirin eugenol ester regulates cecal contents metabolomic profile and microbiota in an animal model of hyperlipidemia
Cited by: 19
Author(s): Ning Ma, Xi-Wang Liu, Xiaojun Kong, Shihong Li, Zeng-Hua Jiao, Zhe Qin, Yajun Yang, Jianyong Li
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-27657-x

Zebrafish mutants and TEAD reporters reveal essential functions for Yap and Taz in posterior cardinal vein development
Cited by: 37
Author(s): Matteo Astone, Jason Kuan Han Lai, Sirio Dupont, Didier Y. R. Stainier, Francesco Argenton, Andrea Vettori
Software Mentions: 2
Published: about 8 years ago

10.1186/s12917-019-2006-6

Metabolic derangements and reduced survival of bile-extracted Asiatic black bears (Ursus thibetanus)
Cited by: 9
Author(s): Monica Kaho Herkules Bando, O. Lynne Nelson, Clark Kogan, Rance K. Sellon, Michelle M. Wiest, Heather Bacon, Mandala Hunter-Ishikawa, Wendy Leadbeater, Koji Yamazaki, Yipeng Jin, Takeshi Komatsu, David McGeachy
Software Mentions: 2
Published: about 7 years ago

10.1186/1752-0509-9-S3-S5

A knowledge base for Vitis vinifera functional analysis
Cited by: 13
Author(s): Alfredo Pulvirenti, Rosalba Giugno, Rosario Distefano, Giuseppe Pigola, Misael Mongiovì, Girolamo Giudice, Vera Vendramin, Alfio Lombardo, Federica Cattonaro, Alfredo Ferro
Software Mentions: 2
Published: over 11 years ago

10.3390/pathogens10091117

Screening of Dietary Ingredients against the Honey Bee Parasite Nosema ceranae
Cited by: 13
Author(s): Chiara Braglia, Daniele Alberoni, Martín Pablo Porrini, Melisa Paula Garrido, Loredana Baffoni, Diana Di Gioia
Software Mentions: 2
Published: almost 5 years ago

10.3390/pathogens10091183

Nanopore-Based Surveillance of Zoonotic Bacterial Pathogens in Farm-Dwelling Peridomestic Rodents
Cited by: 7
Author(s): Nusrat Jahan, Laramie L. Lindsey, Evan J. Kipp, Adam Reinschmidt, Brad Heins, Amy M. Runck, Peter A. Larsen
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.739072

Transcriptome Reveals Allele Contribution to Heterosis in Maize
Cited by: 1
Author(s): Jianzhong Wu, Dequan Sun, Qian Zhao, Hongjun Yong, Degui Zhang, Hao Zhang, Zhiqiang Zhou, Jienan Han, Xiaocong Zhang, Zhennan Xu, Xinhai Li, Mingshun Li, Jianfeng Weng
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13104-017-2824-1

Low toxicity and favorable clinical and quality of life impact after non-myeloablative autologous hematopoietic stem cell transplant in Crohn’s disease
Cited by: 18
Author(s): Milton Artur Ruiz, Roberto Luiz Kaiser, Luiz Gustavo de Quadros, Lílian Piron-Ruiz, Tatiana Peña-Arciniegas, Mikaell Alexandre Gouvêa Faria, Rubens Camargo Siqueira, Flavio Fontes Pirozzi, Fernanda Soubhia Liedtke Kaiser, Richard K. Burt
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0082751

Global Assessment of Antrodia cinnamomea-Induced MicroRNA Alterations in Hepatocarcinoma Cells
Cited by: 10
Author(s): Yen–Ju Chen, Mike W.C. Thang, Yu Tzu Chan, Yu-Feng Huang, Nianhan Ma, Alice L. Yu, Ching‐Yi Wu, Miao Hu, Kuo Ping Chiu
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0234400

Combine performance, draft position and playing position are poor predictors of player career outcomes in the Australian Football League
Cited by: 9
Author(s): Benjamin J. Gogos, Paul Larkin, Jade Alexandra Ziems Haycraft, Neil Collier, Sam Robertson
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-29793-w

Nasal microbiota clusters associate with inflammatory response, viral load, and symptom severity in experimental rhinovirus challenge
Cited by: 48
Author(s): Markus J. Lehtinen, Ashley A. Hibberd, Sofia Männikkö, Nicolas Yeung, Tommi Kauko, Sofia D. Forssten, Liisa Lehtoranta, Sampo J. Lahtinen, Buffy Stahl, Anna Lyra, Ronald B. Turner
Software Mentions: 2
Published: about 8 years ago

10.1002/ajmg.b.32627

Delineating the psychiatric and behavioral phenotype of recurrent 2q13 deletions and duplications
Cited by: 15
Author(s): Kate Wolfe, Andrew McQuillin, Viola Alesi, Elise Labis, Peter Cutajar, Bruno Dallapiccola, Maria Lisa Dentici, Anne Dieux-Coëslier, Bénédicte Duban‐Bedu, Tina Duelund Hjortshøj, Himanshu Goel, Sara Loddo, Deborah Morrogh, Anne-Laure Mosca-Boidron, Antonio Novelli, Laurence Olivier-Faivre, J. M. R. Parker, Michael Parker, Christine Patch, Anna L. Pelling, Thomas Smol, Zeynep Tümer, Olivier Vanakker, Arie van Haeringen, Clémence Vanlerberghe, André Strydom, David Skuse, Nick Bass
Software Mentions: 2
Published: over 8 years ago

10.1002/advs.202003164

Temporarily Epigenetic Repression in Bergmann Glia Regulates the Migration of Granule Cells
Cited by: 2
Author(s): Shaoxuan Chen, Kunkun Zhang, Boxin Zhang, Mengyun Jiang, Xue Zhang, Yi Guo, Yingying Yu, Tianyu Qin, Hongda Li, Qiang Chen, Zhiyu Cai, Site Luo, Yi Huang, Haixia Jin, Wei Mo
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-021-05463-5

Effects of short-term methionine and cysteine restriction and enrichment with polyunsaturated fatty acids on oral glucose tolerance, plasma amino acids, fatty acids, lactate and pyruvate: results from a pilot study
Cited by: 8
Author(s): Trond E. Olsen, Bente Øvrebø, Cheryl Turner, Nasser E. Bastani, Helga Refsum, Kathrine J. Vinknes
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-020-00727-4

Clinical and molecular characterization of virus-positive and virus-negative Merkel cell carcinoma
Cited by: 59
Author(s): Gabriel J. Starrett, Manisha Thakuria, Tianqi Chen, Christina Marcelus, Jingwei Cheng, Jason Nomburg, Aaron R. Thorner, Michael K. Slevin, Winslow Powers, Robert T. Burns, Caitlin E Perry, Adriano Piris, Frank C. Kuo, Guilherme Rabinowits, Anita Giobbie‐Hurder, Laura E. MacConaill, James A. DeCaprio
Software Mentions: 2
Published: over 6 years ago

10.3390/pathogens9110888

Genomic Features and Evolution of the Parapoxvirus during the Past Two Decades
Cited by: 4
Author(s): Xiaoting Yao, Ming Pang, Tianxing Wang, Xi Chen, Xidian Tang, Jianjun Chang, Dekun Chen, Wentao Ma
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-55908-y

De novo Assembly of the Brugia malayi Genome Using Long Reads from a Single MinION Flowcell
Cited by: 5
Author(s): Joseph R. Fauver, John Martin, Gary J. Weil, Makedonka Mitreva, Peter Fischer
Software Mentions: 2
Published: over 6 years ago

10.3390/pathogens9060421

Quantification of the Animal Tuberculosis Multi-Host Community Offers Insights for Control
Cited by: 29
Author(s): Nuno Santos, Céline Richomme, Telmo Nunes, Joaquı́n Vicente, Paulo C. Alves, José de la Fuente, Margarida Correia-Neves, Maria‐Laura Boschiroli, Richard J. Delahay, Christian Gortázar
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2021.621432

Glioblastoma Primary Cells Retain the Most Copy Number Alterations That Predict Poor Survival in Glioma Patients
Cited by: 1
Author(s): Chia‐Hua Chen, Yi-Chin Lin, You‐Yu Lin, Chang-Hung Lin, Lin Feng, Ian Yi‐Feng Chang, Kuo‐Chen Wei, Chiung-Yin Huang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-56206-3

Dynamics and stabilization of the rumen microbiome in yearling Tibetan sheep
Cited by: 33
Author(s): Lei Wang, Ke Zhang, Chenguang Zhang, Yan Feng, Xiao‐Wei Zhang, Xiaolong Wang, Guofang Wu
Software Mentions: 2
Published: over 6 years ago

10.1186/1756-0500-7-440

Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: about 12 years ago

10.1038/s41598-019-56632-3

Matrisome-Associated Gene Expression Patterns Correlating with TIMP2 in Cancer
Cited by: 21
Author(s): David Peeney, Yu Fan, Trinh Nguyen, Daoud Meerzaman, William G. Stetler-Stevenson
Software Mentions: 2
Published: over 6 years ago

10.3390/pathogens9110941

Molecular Typing of Neisseria gonorrhoeae Clinical Isolates in Russia, 2018–2019: A Link Between penA Alleles and NG-MAST Types
Cited by: 7
Author(s): Ilya Kandinov, Ekaterina Dementieva, Dmitry Kravtsov, А. В. Честков, А. А. Кубанов, В С Соломка, D. G. Deryabin, Dmitry Gryadunov, Boris Shaskolskiy
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-56526-4

Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.)
Cited by: 22
Author(s): Alicia Talavera, Aboozar Soorni, Aureliano Bombarely, Antonio J. Matas, J. I. Hormaza
Software Mentions: 2
Published: over 6 years ago

10.1186/s13104-021-05657-x

Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Cited by: 4
Author(s): Zoltán Maróti, Dóra Tombácz, István Prazsák, Norbert Moldován, Zsolt Csabai, Gábor Torma, Zsolt Balázs, Tibor Kalmár, Béla Dénes, M Snyder, Zsolt Boldogkői
Software Mentions: 2
Published: about 5 years ago

10.1186/s13073-020-00802-w

Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2
Cited by: 50
Author(s): Jason Nomburg, Matthew Meyerson, James A. DeCaprio
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens9120982

Proteomic Profiling of the Liver, Hepatic Lymph Nodes, and Spleen of Buffaloes Infected with Fasciola gigantica
Cited by: 6
Author(s): Rui-Si Hu, Fu-Kai Zhang, Hany M. Elsheikha, Qiao-Ni Ma, Muhammad Ehsan, Quan Zhao, Xingquan Zhu
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens9020075

Enniatin Production Influences Fusarium avenaceum Virulence on Potato Tubers, but not on Durum Wheat or Peas
Cited by: 19
Author(s): Anas Eranthodi, Danielle Schneiderman, Linda J. Harris, Thomas E. Witte, Amanda Sproule, Anne Hermans, David P. Overy, Syama Chatterton, Jiajun Liu, Tao Li, Dianevys González-Peña Fundora, Wensheng Zhao, Nora A. Foroud
Software Mentions: 2
Published: over 6 years ago

10.1186/s13104-018-3534-z

Modes of mechanical ventilation vary between hospitals and intensive care units within a university healthcare system: a retrospective observational study
Cited by: 14
Author(s): Craig S. Jabaley, Robert F. Groff, Milad Sharifpour, Jayashree Raikhelkar, James M. Blum
Software Mentions: 2
Published: about 8 years ago

10.1186/s12889-020-09401-1

Bayesian spatial analysis of socio-demographic factors influencing pregnancy termination and its residual geographic variation among ever-married women of reproductive age in Bangladesh
Cited by: 1
Author(s): Rifat Zahan, Cindy Feng
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0126636

Clinical and Genetic Factors Associated with Progression of Geographic Atrophy Lesions in Age-Related Macular Degeneration
Cited by: 58
Author(s): Felix Graßmann, Monika Fleckenstein, Emily Y. Chew, Tobias Strunz, Steffen Schmitz-Valckenberg, Arno P. Göbel, Michael L. Klein, Rinki Ratnapriya, Anand Swaroop, Frank G. Holz, Bernhard H. F. Weber
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2020.542125

Invertebrate Decline Leads to Shifts in Plant Species Abundance and Phenology
Cited by: 9
Author(s): Josephine Ulrich, Solveig Franziska Bucher, Nico Eisenhauer, Anja Schmidt, Manfred Türke, Alban Gebler, Kathryn E. Barry, Markus Lange, Christine Römermann
Software Mentions: 2
Published: almost 6 years ago

10.1002/ajb2.1676

Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex
Cited by: 10
Author(s): Michael V. Ottenlips, Donald H. Mansfield, Sven Buerki, Mary Ann Feist, Stephen R. Downie, Steven Dodsworth, Félix Forest, Gregory M. Plunkett, James F. Smith
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-57499-5

Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight
Cited by: 26
Author(s): Gerbert Sylvestre Dossa, Ian Lorenzo Quibod, Genelou Atienza-Grande, Ricardo Oliva, E. Maiß, Casiana Vera Cruz, Kerstin Wydra
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-57512-x

CRL4-Cereblon complex in Thalidomide Embryopathy: a translational investigation
Cited by: 7
Author(s): Thayne Woycinck Kowalski, João Luiz Ellera Gomes, Gabriela Barreto Caldas-Garcia, Lucas Rosa Fraga, Vanessa Rodrigues Paixão‐Côrtes, Mariana Recamonde‐Mendoza, Maria Teresa Vieira Sanseverino, Lavínia Schüler‐Faccini, Fernanda S.L. Vianna
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-57665-9

Proteomic analysis reveals potential factors associated with enhanced EPS production in Streptococcus thermophilus ASCC 1275
Cited by: 11
Author(s): Aparna Padmanabhan, Tong Yin, Qinglong Wu, Clive Lo, Nagendra P. Shah
Software Mentions: 2
Published: over 6 years ago

10.3390/pathogens10040498

TREM1 rs2234237 (Thr25Ser) Polymorphism in Patients with Cutaneous Leishmaniasis Caused by Leishmania guyanensis: A Case-Control Study in the State of Amazonas, Brazil
Cited by: 5
Author(s): José do Espírito Santo Júnior, Tirza Gabrielle Ramos de Mesquita, Luan Diego Oliveira da Silva, Felipe Jules de Araújo, Josué Lacerda de Souza, Thaís Carneiro de Lacerda, Lener Santos da Silva, Cláudio Marcello da Silveira Júnior, Krys Layane Guimarães Duarte Queiroz, Diogo Matos dos Santos, Cilana Chagas da Silva, Héctor David Graterol Sequera, Melissa Tamayo Hermida, Mara Lúcia Gomes de Souza, Marcus Vinítius de Farias Guerra, Rajendranath Ramasawmy
Software Mentions: 2
Published: over 5 years ago

10.1186/s12889-021-10764-2

Revisiting the continuum of resistance model in the digital age: a comparison of early and delayed respondents to the Norwegian counties public health survey
Cited by: 4
Author(s): Benjamin Clarsen, Jens Christoffer Skogen, Thomas Sevenius Nilsen, Leif Edvard Aarö
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.613869

TSPAN7 Exerts Anti-Tumor Effects in Bladder Cancer Through the PTEN/PI3K/AKT Pathway
Cited by: 21
Author(s): Xi Yu, Shenglan Li, Mingrui Pang, Yang Du, Tao Xu, Tao Bai, Kang Yang, Juncheng Hu, Shaoming Zhu, Lei Wang, Xiuheng Liu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147596

Integration of Transcriptome and Metabolome Reveals the Genes and Metabolites Involved in Bifidobacterium bifidum Biofilm Formation
Cited by: 15
Author(s): Zongmin Liu, Lingzhi Li, Zhifeng Fang, Yuan‐Kun Lee, Jianxin Zhao, Hao Zhang, Wei Chen, Haitao Li, Wenwei Liu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12909-020-1984-1

Assessment of third-year medical students’ comfort and preparedness for navigating challenging clinical scenarios with patients, peers, and supervisors
Cited by: 1
Author(s): Anna R. Kahkoska, Tracy M. Deselm, Laura Young
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12051080

YM155-Adapted Cancer Cell Lines Reveal Drug-Induced Heterogeneity and Enable the Identification of Biomarker Candidates for the Acquired Resistance Setting
Cited by: 4
Author(s): Martin Michaelis, Mark N. Wass, Ian Reddin, Yvonne Voges, Florian Rothweiler, Stephanie Hehlgans, Jaroslav Činátl, Marco Mernberger, Andrea Nist, Thorsten Stiewe, Franz Rödel, Jindřich Činátl
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.01380

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products
Cited by: 8
Author(s): Aline Moser, Daniel Wüthrich, Rémy Bruggmann, Elisabeth Eugster‐Meier, Léo Meile, Stefan Irmler
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.02838

Composition and Diversity of CRISPR-Cas13a Systems in the Genus Leptotrichia
Cited by: 20
Author(s): Shinya Watanabe, Bintao Cui, Kotaro Kiga, Yoshifumi Aiba, Xin-Ee Tan, Yusuke Sato’o, Moriyuki Kawauchi, Tanit Boonsiri, Kanate Thitiananpakorn, Yusuke Taki, Fengyu Li, Aa Haeruman Azam, Yumi Nakada, Teppei Sasahara, Longzhu Cui
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0155046

A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa
Cited by: 23
Author(s): Elizabeth Matisoo-Smith, Anna L. Gosling, James Boocock, Olga Kardailsky, Yara Kurumilian, Sihem Roudesli‐Chebbi, Leila Badre, Jean-Paul Morel, Leïla Ladjimi Sebaï, Pierre Zalloua
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2019.02852

Increasing Prevalence of ESBL-Producing Multidrug Resistance Escherichia coli From Diseased Pets in Beijing, China From 2012 to 2017
Cited by: 41
Author(s): Yanyun Chen, Zhihai Liu, Yaru Zhang, Zhenbiao Zhang, Lei Lei, Zhaofei Xia
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01001

Genome Analysis of Coxsackievirus A4 Isolates From Hand, Foot, and Mouth Disease Cases in Shandong, China
Cited by: 11
Author(s): Min Wang, Juan Li, Mingxiao Yao, Yawei Zhang, Tao Hu, Michael J. Carr, Sebastián Duchêne, Xing-Cheng Zhang, Zhenjie Zhang, Hong Zhou, Yigang Tong, Shujun Ding, Xianjun Wang, Weifeng Shi
Software Mentions: 1
Published: over 7 years ago

10.1007/s00403-019-02000-0

Molecular profiling of TOX-deficient neoplastic cells in cutaneous T cell lymphoma
Cited by: 4
Author(s): Jingkai Xu, He Huang, Shangshang Wang, Yanzhen Chen, Xueli Yin, Xuejun Zhang, Yaohua Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0227199

Transgenic overexpression of endogenous FLOWERING LOCUS T-like gene MeFT1 produces early flowering in cassava
Cited by: 24
Author(s): John Odipio, Getu Beyene, Raj Deepika Chauhan, Titus Alicai, Rebecca Bart, Dmitri A. Nusinow
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.02447

Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments
Cited by: 21
Author(s): Mie Bech Lukassen, Nadieh de Jonge, Sabine M Bjerregaard, Raju Podduturi, Niels O. G. Jørgensen, Mikael Agerlin Petersen, Gianmarco Silva David, Reinaldo José Silva, Jeppe Lund Nielsen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0174534

The microRNA repertoire of Tibetan naked carp Gymnocypris przewalskii: A case study in Schizothoracinae fish on the Tibetan Plateau
Cited by: 15
Author(s): Chao Tong, Fei Tian, Cunfang Zhang, Kai Zhao
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.03110

Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress
Cited by: 29
Author(s): Bienvenido W. Cortes, Annabel L. Naditz, Justin M. Anast, Stephan Schmitz‐Esser
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.699788

Edging on Mutational Bias, Induced Natural Selection From Host and Natural Reservoirs Predominates Codon Usage Evolution in Hantaan Virus
Cited by: 9
Author(s): Galal Ata, Hao Wang, Haoxiang Bai, Xiaoting Yao, Shiheng Tao
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0146104

Statistical Evaluation of HTS Assays for Enzymatic Hydrolysis of β-Keto Esters
Cited by: 11
Author(s): O. Buß, Sven Jäger, Sarah‐Marie Dold, Sarah C. Zimmermann, Kay Hamacher, Katja Schmitz, Jens Rudat
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0256342

Plant strategies for maximizing growth during water stress and subsequent recovery in Solanum melongena L. (eggplant)
Cited by: 13
Author(s): E. F. Delfin, Sarah Tepler Drobnitch, Louise H. Comas
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13023-021-01898-y

Non-hotspot PIK3CA mutations are more frequent in CLOVES than in common or combined lymphatic malformations
Cited by: 22
Author(s): Pascal Brouillard, Matthieu J. Schlögel, Nassim Homayun Sepehr, Raphaël Helaers, Angela Queisser, Elodie Fastré, Simon Boutry, Sandra Schmitz, Philippe Clapuyt, Frank Hammer, Anne Dompmartin, Annamaria Weitz-Tuoretmaa, Jussi Laranne, L. Pasquesoone, Catheline Vilain, Laurence M. Boon, Miikka Vikkula
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0182730

Quantifying immediate and delayed effects of anthelmintic exposure on ecosystem functioning supported by a common dung beetle species
Cited by: 17
Author(s): Paul Manning, Sarah A. Beynon, Owen T. Lewis
Software Mentions: 1
Published: about 9 years ago

10.1007/s00253-014-6199-0

Bacillus subtilis as heterologous host for the secretory production of the non-ribosomal cyclodepsipeptide enniatin
Cited by: 49
Author(s): Sophia Zobel, Jana Kumpfmüller, Roderich D. Süssmuth, Thomas Schweder
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0170658

Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis
Cited by: 6
Author(s): Pierre Bougnères, Sophie Le Fur, Sophie Valtat, Yoichiro Kamatani, Mark Lathrop, Alain‐Jacques Valleron
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0222610

Cardiac resynchronization therapy-heart failure (CRT-HF) clinic: A novel model of care
Cited by: 18
Author(s): Eiran Z. Gorodeski, Christina Magnelli-Reyes, Laurie Ann Moennich, Adam Grimaldi, John Rickard
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0176541

Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods
Cited by: 46
Author(s): Izumi Katano, Ken Harada, Rio Souma, Toshifumi Minamoto
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0206512

Immune diversity sheds light on missing variation in worldwide genetic diversity panels
Cited by: 53
Author(s): Laurent Abi-Rached, Philippe Gouret, Jung-Hua Yeh, Julie Di Cristofaro, Pierre Pontarotti, Christophe Picard, Julien Paganini
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0253440

Evaluating coverage bias in next-generation sequencing of Escherichia coli
Cited by: 6
Author(s): Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O’Dea
Software Mentions: 1
Published: about 5 years ago

10.1128/AEM.01113-20

Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms
Cited by: 4
Author(s): N. A. Teteneva, S. V. Mart’yanov, María Esteban-López, Jörg Kahnt, Timo Glatter, А.И. Нетрусов, В. К. Плакунов, Victor Sourjik
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0241373

Variations in the Circle of Willis in a large population sample using 3D TOF angiography: The Tromsø Study
Cited by: 28
Author(s): Lars B. Hindenes, Asta Håberg, Liv Hege Johnsen, Ellisiv B. Mathiesen, David Robben, Torgil Vangberg
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.01214

Candidatus Amarolinea and Candidatus Microthrix Are Mainly Responsible for Filamentous Bulking in Danish Municipal Wastewater Treatment Plants
Cited by: 35
Author(s): Marta Nierychlo, Simon Jon McIlroy, Sergey Kucheryavskiy, Chenjing Jiang, Anja Ziegler, Zivile Kondrotaite, Mikkel Stokholm-Bjerregaard, Per Halkjær Nielsen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2015.00415

Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore
Cited by: 64
Author(s): Rebecca Bell, Jie Zheng, Erik Burrows, Sarah Allard, Charles Y. Wang, Christine E. Keys, David Melka, Errol Strain, Yan Luo, Marc W. Allard, Steven L. Rideout, Eric W. Brown
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0149813

Effects of Invasive-Plant Management on Nitrogen-Removal Services in Freshwater Tidal Marshes
Cited by: 21
Author(s): Mary Alldred, Stephen B. Baines, Stuart Findlay
Software Mentions: 1
Published: over 10 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441