cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40168-019-0683-9

Alterations in the gut microbiome and metabolism with coronary artery disease severity
Cited by: 179
Author(s): Honghong Liu, Xi Chen, Xiaomin Hu, Haitao Niu, Ran Tian, Hui Wang, Haiyu Pang, Lingjuan Jiang, Bin Qiu, Xiuting Chen, Yang Zhang, Yinglong Ma, Si Tang, Hanyu Li, Siqin Feng, Shuyang Zhang, Chenhong Zhang
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-1045-7

Successful delivery of large-size CRISPR/Cas9 vectors in hard-to-transfect human cells using small plasmids
Cited by: 30
Author(s): Jonas Nørskov Søndergaard, Keyi Geng, Christian Sommerauer, Ionut Atanasoai, Xiushan Yin, Claudia Kutter
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2014.00678

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes
Cited by: 220
Author(s): Austin G. Davis-Richardson, Alexandria N. Ardissone, Raquel Dias, Ville Simell, Michael T. Leonard, Kaisa Kemppainen, Jennifer C. Drew, Desmond Schatz, Mark A. Atkinson, Bryan Kolaczkowski, Jorma Ilonen, Mikael Knip, Jorma Toppari, Noora Nurminen, Heikki Hyöty, Riitta Veijola, Tuula Simell, Juha Mykkänen, Olli Simell, Eric W. Triplett
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13075-019-1934-7

Expression analysis of the osteoarthritis genetic susceptibility mapping to the matrix Gla protein gene MGP
Cited by: 25
Author(s): Colin Shepherd, Abigail E. Reese, Louise N. Reynard, John Loughlin
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00490

Population Structure of Sclerotinia subarctica and Sclerotinia sclerotiorum in England, Scotland and Norway
Cited by: 26
Author(s): John P. Clarkson, Rachel Warmington, Paul Walley, Matthew Denton‐Giles, Martin J. Barbetti, Guro Brodal, Berit Nordskog
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-20935-8

Impact of mid-season sulphur deficiency on wheat nitrogen metabolism and biosynthesis of grain protein
Cited by: 39
Author(s): Zitong Yu, Angéla Juhász, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20833-z

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Cited by: 21
Author(s): Raphaël Morard, Marie-José Garet-Delmas, Frédéric Mahe, Sarah Romac, Julie Poulain, Michal Kučera, Colomban de Vargas
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.619632

Microbial Communities in Flexible Biomethanation of Hydrogen Are Functionally Resilient Upon Starvation
Cited by: 12
Author(s): Washington Logroño, Denny Popp, Marcell Nikolausz, Paul Kluge, Hauke Harms, Sabine Kleinsteuber
Software Mentions: 2
Published: over 5 years ago

10.3390/ani11040992

Benefits of Silvopastoral Systems for Keeping Beef Cattle
Cited by: 9
Author(s): Stella Huertas, Pablo Ernesto Bobadilla, Ignacio Alcántara, Emilie Akkermans, F.J.C.M. van Eerdenburg
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.63907

A cell atlas of the chick retina based on single-cell transcriptomics
Cited by: 66
Author(s): Masahito Yamagata, Wenjun Yan, Joshua R. Sanes
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.03008

Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields
Cited by: 12
Author(s): Jan Vander Roost, Frida Lise Daae, Ida Helene Steen, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.03152

Fungal Community as a Bioindicator to Reflect Anthropogenic Activities in a River Ecosystem
Cited by: 28
Author(s): Yaohui Bai, Qiaojuan Wang, Kailingli Liao, Zhiyu Jian, Chen Zhao, Jiuhui Qu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-018-0493-5

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
Cited by: 60
Author(s): Brandon Brooks, Matthew R. Olm, Brian Firek, Robyn Baker, David Geller-McGrath, Sophia R. Reimer, Karina Ruth Soenjoyo, Jennifer S. Yip, Dylan Dahan, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: over 8 years ago

10.1186/s42523-020-00030-y

Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets
Cited by: 5
Author(s): Supritha Dugyala, Travis Ptacek, Jeremy M. Simon, Yuhui Li, Flavio Fröhlich
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.54097

A survey-based analysis of the academic job market
Cited by: 29
Author(s): Jason D Fernandes, Sarvenaz Sarabipour, Christopher T. Smith, Natalie M. Niemi, Nafisa M. Jadavji, Ariangela J. Kozik, Alex S. Holehouse, Vikas Pejaver, Orsolya Symmons, Alexandre W. Bisson‐Filho, Amanda Haage
Software Mentions: 2
Published: over 6 years ago

10.1186/s42523-019-0010-6

The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus
Cited by: 30
Author(s): Camille Nina Allonsius, Wannes Van Beeck, Ilke De Boeck, Stijn Wittouck, Sarah Lebeer
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-018-0441-4

Gut-dependent microbial translocation induces inflammation and cardiovascular events after ST-elevation myocardial infarction
Cited by: 167
Author(s): Xin Zhou, Jing Li, Junli Guo, Bin Geng, Wenjie Ji, Qian Zhao, Jinxin Li, Xinlin Liu, Junxiang Liu, Zhao-Zeng Guo, Wei Cai, Yun Ma, Dong Ren, Jun Miao, Shaobo Chen, Zhuoli Zhang, Junru Chen, Jiuchang Zhong, Wenbin Liu, Ming‐Hui Zou, Yuming Li, Jun Cai
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.649969

BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements
Cited by: 29
Author(s): Xiaoting Hua, Qian Liang, Min Deng, Jintao He, Meixia Wang, Wenjie Hong, Jun Wu, Boxun Lu, Sebastian Leptihn, Yunsong Yu, Huan Chen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0226312

Significance of skull osteoporosis to the development of peritumoral brain edema after LINAC-based radiation treatment in patients with intracranial meningioma
Cited by: 2
Author(s): Ryang Hun Lee, Jae Min Kim, Jin Hwan Cheong, Je Il Ryu, Young Soo Kim, Myung Hoon Han
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.667790

Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit
Cited by: 8
Author(s): Chloe Myers, Charlotte J. Houldcroft, Sunando Roy, Ben Margetts, Timothy Best, Cristina Venturini, José Afonso Guerra-Assunção, Charlotte A. Williams, Rachel Williams, Helen Dunn, John C. Hartley, Kanchan Rao, Kathryn J. Rolfe, Judith Breuer
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0453-0

A comparison of methods used to unveil the genetic and metabolic pool in the built environment
Cited by: 18
Author(s): C. Gómez-Silván, Marcus H. Y. Leung, Katherine Grue, Randeep Kaur, Xinzhao Tong, Patrick K. H. Lee, Gary L. Andersen
Software Mentions: 2
Published: over 8 years ago

10.1038/s42003-019-0287-8

Historical contingency and productivity effects on food-chain length
Cited by: 2
Author(s): Hideyuki Doi, Helmut Hillebrand
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2016.02078

Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea
Cited by: 23
Author(s): Markus V. Lindh, Johanna Sjöstedt, Michèle Casini, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0219557

Effect of live yeast Saccharomyces cerevisiae supplementation on the performance and cecum microbial profile of suckling piglets
Cited by: 41
Author(s): Tadele G. Kiros, Diana Luise, Hooman Derakhshani, Renée M. Petri, Paolo Trevisi, Romain d'Inca, Eric Auclair, Andrew G. Van Kessel
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.683234

Effects of Different Treatment of Fecal Microbiota Transplantation Techniques on Treatment of Ulcerative Colitis in Rats
Cited by: 7
Author(s): Fengshuo Zhu, Yifan Ke, Yiting Luo, Jiaqian Wu, Pei Chen Wu, Fuyin Ma, Yingchao Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-020-00046-4

Antibiotic-induced alterations and repopulation dynamics of yellowtail kingfish microbiota
Cited by: 21
Author(s): Thibault Philippe Raymond Albert Legrand, Sarah R. Catalano, Melissa L. Wos‐Oxley, James W. Wynne, Laura S. Weyrich, Alan Oxley
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0163435

Pneumococcal Serotypes Colonise the Nasopharynx in Children at Different Densities
Cited by: 12
Author(s): Fernanda Rodrigues, León Danon, Begonia Morales-Aza, Paulina Sikora, Valtýr Thors, Muriel Ferreira, Katherine A. Gould, Jason Hinds, Adam Finn
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2020.00716

Compositional and Quantitative Insights Into Bacterial and Archaeal Communities of South Pacific Deep-Sea Sponges (Demospongiae and Hexactinellida)
Cited by: 35
Author(s): Georg Steinert, Kathrin Busch, Kristina Bayer, Sahar Kodami, Pedro Martínez Arbizu, Michelle Kelly, Sadie Mills, Dirk Erpenbeck, Martin Dohrmann, Gert Wörheide, Ute Hentschel, Peter J. Schupp
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-021-02543-x

Heimdallarchaea encodes profilin with eukaryotic-like actin regulation and polyproline binding
Cited by: 8
Author(s): Sabeen Survery, Fredrik Hurtig, Syed Razaul Haq, Jens Eriksson, Lionel Guy, K. Johan Rosengren, Ann-Christin Lindås, N. Celestine
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-01743-9

Immunoreactive peptide maps of SARS-CoV-2
Cited by: 35
Author(s): Nischay Mishra, Xi Huang, Saurabh Joshi, Cheng Guo, James Ng, Riddhi Thakkar, Yongjian Wu, Dong Xiao, Qianlin Li, Richard S. Pinapati, Eric Sullivan, Adrian Caciula, Rafal Tokarz, Thomas Briese, Jiahai Lu, W. Ian Lipkin
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01254-z

Dengue virus dominates lipid metabolism modulations in Wolbachia-coinfected Aedes aegypti
Cited by: 26
Author(s): Cassandra Koh, M. Nurul Islam, Yixin H. Ye, Nunya Chotiwan, Barbara Graham, John T. Belisle, Konstantinos A. Kouremenos, Saravanan Dayalan, Dedreia Tull, Stephan Klatt, Rushika Perera, Elizabeth A. McGraw
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.672656

The Abundance of the nifH Gene Became Higher and the nifH-Containing Diazotrophic Bacterial Communities Changed During Primary Succession in the Hailuogou Glacier Chronosequence, China
Cited by: 3
Author(s): Yingyan Wang, Yulan Chen, Qinyu Xue, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhang, Petri Penttinen, Yunfu Gu
Software Mentions: 2
Published: over 5 years ago

10.1111/cogs.12721

Entrainment and Modulation of Gesture–Speech Synchrony Under Delayed Auditory Feedback
Cited by: 22
Author(s): Wim Pouw, James A. Dixon
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00045

Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes (mpeBA and cpeBA)
Cited by: 45
Author(s): Patricia Sánchez‐Baracaldo, Giorgio Bianchini, Andrea Di Cesare, Cristiana Callieri, Nathan Chrismas
Software Mentions: 2
Published: over 7 years ago

10.1186/s41235-018-0105-8

The impact of video speed on the decision-making process of sports officials
Cited by: 23
Author(s): Jochim Spitz, Pieter Moors, Johan Wagemans, Werner Helsen
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-019-0755-x

Microbiota analysis optimization for human bronchoalveolar lavage fluid
Cited by: 25
Author(s): Pierre H. H. Schneeberger, Janice Prescod, Liran Levy, David Hwang, T. Martinu, Bryan Coburn
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-22610-4

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition
Cited by: 65
Author(s): Jakob Vowinckel, Aleksej Zelezniak, Roland Bruderer, Michael Mülleder, Lukas Reiter, Markus Ralser
Software Mentions: 2
Published: over 8 years ago

10.6061/clinics/2019/e1070

Steatosis and steatohepatitis found in adults after death due to non-burn trauma
Cited by: 2
Author(s): Paulo Reis-Júnior, Ryan Tanigawa, Gustavo Heluani Antunes de Mesquita, Natália Pinheiro Basan, Venâncio Avancini Ferreira Alves, Luiz Augusto Carneiro D’Albuquerque, Wellington Andraus
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-22470-y

Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
Cited by: 25
Author(s): Ioana Onuț-Brännström, Mitchell Benjamin, Douglas G. Scofield, Starri Heiðmarsson, Martin Andersson, Eva S. Lindström, Hanna Johannesson
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.57915

An analog to digital converter controls bistable transfer competence development of a widespread bacterial integrative and conjugative element
Cited by: 7
Author(s): Nicolas Carraro, Xavier Richard, Sandra Sulser, François Delavat, Christian Mazza, van der Peter Meer
Software Mentions: 2
Published: over 6 years ago

10.1002/aps3.1207

EyeChrom and CCDBcurator: Visualizing chromosome count data from plants
Cited by: 10
Author(s): Rodrigo Rivero, Emily B. Sessa, Rosana Zenil‐Ferguson
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-017-0265-7

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
Cited by: 51
Author(s): Alya Heirali, Matthew L. Workentine, Nicole Acosta, Ali Poonja, Douglas G. Storey, Ranjani Somayaji, Harvey Rabin, Fiona Whelan, Michael G. Surette, Michael D. Parkins
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0202270

The microbiota of hematophagous ectoparasites collected from migratory birds
Cited by: 18
Author(s): Francesco Cerutti, Paola Modesto, F. Rizzo, Alessandra Cravero, Irena Jurman, Stefano Costa, Mauro Giammarino, Maria Lucia Mandola, Maria Goria, Slobodanka Radović, Federica Cattonaro, Pier Luigi Acutis, Simone Peletto
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0204556

Alpha-amylase reactivity and recovery patterns in anhedonic young adults performing a tandem skydive
Cited by: 3
Author(s): Charlotte Vrijen, Eeske van Roekel, Albertine J. Oldehinkel
Software Mentions: 2
Published: about 8 years ago

10.1128/MRA.00479-20

Nearly Complete Genome Sequence of Brugia pahangi FR3
Cited by: 4
Author(s): John Mattick, Silvia Libro, Benjamin C. Sparklin, Matthew Chung, Robin E. Bromley, Suvarna Nadendla, Xüna Zhao, Sandra Ott, Lisa Sadzewicz, Luke J. Tallon, Michelle L. Michalski, Jeremy M. Foster, Julie C. Dunning Hotopp
Software Mentions: 2
Published: over 6 years ago

10.1128/MRA.00273-21

Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data
Cited by: 1
Author(s): Emma L. Keeler, Louis J. Taylor, Arwa Abbas, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2020.00520

Inflammatory Drivers of Cardiovascular Disease: Molecular Characterization of Senescent Coronary Vascular Smooth Muscle Cells
Cited by: 19
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Meik Kunz, Xiaoyan Ke, Annette Just, Andreas Pich, Johann Bauersachs, Jan Fiedler, Daniel Sedding, Thomas Thum
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02260

Fecal Microbiome Characteristics and the Resistome Associated With Acquisition of Multidrug-Resistant Organisms Among Elderly Subjects
Cited by: 10
Author(s): Rafael Araos, Thomas Battaglia, Juan A. Ugalde, Marcelo Rojas-Herrera, Martin J. Blaser, Erika M. C. D’Agata
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-24379-y

Pan-cancer analysis of somatic mutations and transcriptomes reveals common functional gene clusters shared by multiple cancer types
Cited by: 29
Author(s): Hyeongmin Kim, Yong Min Kim
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0215508

In silico analysis of the V66M variant of human BDNF in psychiatric disorders: An approach to precision medicine
Cited by: 20
Author(s): Clara Carolina Silva De Oliveira, Gabriel Rodrigues Coutinho Pereira, Jamile Yvis Santos De Alcantara, Deborah Antunes, Ernesto R. Caffarena, Joelma Freire De Mesquita
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-24467-z

Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes
Cited by: 19
Author(s): Gurmeet Kaur, Lakshminarayan M. Iyer, S. Subramanian, L. Aravind
Software Mentions: 2
Published: over 8 years ago

10.1002/mbo3.726

Characterization of the bacterial community composition in water of drinking water production and distribution systems in Flanders, Belgium
Cited by: 15
Author(s): Ado Van Assche, Sam Crauwels, Jos De Brabanter, Kris Willems, Bart Lievens
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0179143

Transcriptional mechanisms associated with seed dormancy and dormancy loss in the gibberellin-insensitive sly1-2 mutant of Arabidopsis thaliana
Cited by: 13
Author(s): Sven K. Nelson, Camille M. Steber
Software Mentions: 2
Published: over 9 years ago

10.1016/j.gpb.2020.12.004

Large-scale Proteomic and Phosphoproteomic Analyses of Maize Seedling Leaves During De-etiolation
Cited by: 11
Author(s): Zili Gao, Zhuo Shen, Qing Chao, Zhen Yan, Xuan-Liang Ge, Tian-Cong Lu, Haiyan Zheng, Chunrong Qian, Bai-Chen Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/nu11050972

Effect of Protein-Fortified Diet on Nitrogen Balance in Critically Ill Patients: Results from the OPINiB Trial
Cited by: 11
Author(s): Matteo Danielis, Giulia Lorenzoni, Danila Azzolina, Anna Iacobucci, Omar Trombini, Amato De Monte, Darío Gregori, Fabio Beltrame
Software Mentions: 2
Published: over 7 years ago

10.1002/mbo3.436

Maintaining stability of the rumen ecosystem is associated with changes of microbial composition and epithelial TLR signaling
Cited by: 13
Author(s): Hong Shen, Zhan Chen, Zongzhuan Shen, Zhongyan Lu
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.23249

Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity
Cited by: 38
Author(s): Michael P. Meers, Telmo Henriques, Christopher A. Lavender, Daniel J. McKay, Brian D. Strahl, Robert J. Duronio, Karen Adelman, A. Gregory Matera
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-25201-5

Chromosomal barcoding as a tool for multiplexed phenotypic characterization of laboratory evolved lineages
Cited by: 18
Author(s): Leonie Johanna Jahn, Andreas Porse, Christian Munck, Daniel Simon, Svetlana Volkova, Morten Otto Alexander Sommer
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0164395

Seasonal Vitamin D Status in Polish Elite Athletes in Relation to Sun Exposure and Oral Supplementation
Cited by: 56
Author(s): Jarosław Krzywański, Tomasz Mikulski, Hubert Krysztofiak, Marcel Młyńczak, Ewa Gaczynska, Andrzej Ziemba
Software Mentions: 2
Published: about 10 years ago

10.1002/mbo3.456

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors
Cited by: 28
Author(s): Shelesh Agrawal, Søren Michael Karst, Eva M. Gilbert, Harald Horn, Per Halkjær Nielsen, Susanne Lackner
Software Mentions: 2
Published: over 9 years ago

10.1002/mbo3.768

Pressure and temperature effects on deep-sea hydrocarbon-degrading microbial communities in subarctic sediments
Cited by: 17
Author(s): Luis J Perez Calderon, Evangelia Gontikaki, Lloyd D. Potts, Sophie Shaw, Alejandro Gallego, James A. Anderson, Ursula Witte
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphys.2019.01553

Transcription and Activity of Digestive Enzymes of Nezara viridula Maintained on Different Plant Diets
Cited by: 11
Author(s): Pablo Emiliano Cantón, Bryony C. Bonning
Software Mentions: 2
Published: almost 7 years ago

10.1007/s11357-021-00443-w

Serological and viral genetic features of patients with COVID-19 in a selected German patient cohort—correlation with disease characteristics
Cited by: 4
Author(s): Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Folker Wenzel, Holger Herbeck, J. Blessing, Peter Schierack, Stefan Rödiger, Dirk Roggenbuck
Software Mentions: 2
Published: about 5 years ago

10.1186/s13742-015-0051-z

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
Cited by: 142
Author(s): Andy Kilianski, Jamie Haas, Elizabeth J Corriveau, Alvin T. Liem, Kristen L. Willis, Dana R Kadavy, C. Nicole Rosenzweig, Samuel S. Minot
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-22493-5

A Five-microRNA Signature for Survival Prognosis in Pancreatic Adenocarcinoma based on TCGA Data
Cited by: 37
Author(s): Xiuhui Shi, Li Xu, Hang Zhang, Ruizhi He, Yan Zhao, Min Zhou, Shutao Pan, Chunle Zhao, Yechen Feng, Min Wang, Xiaomao Guo, Renyi Qin
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2021.637617

Survival of the Sawfly Athalia rosae Upon Infection by an Entomopathogenic Fungus and in Relation to Clerodanoid Uptake
Cited by: 6
Author(s): Caroline Zanchi, Lai Ka Lo, R Reshma, Isabel Moritz, Joachim Kurtz, Caroline Müller
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0109343

The Growing Price Gap between More and Less Healthy Foods: Analysis of a Novel Longitudinal UK Dataset
Cited by: 153
Author(s): Nicholas Jones, Annalijn Conklin, Marc Suhrcke, Pablo Monsivais
Software Mentions: 2
Published: about 12 years ago

10.1099/mgen.0.000594

gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae
Cited by: 2
Author(s): Thea G. Fennell, Grace A. Blackwell, Nicholas R. Thomson, Matthew J. Dorman
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000315

Next-generation sequencing of dsRNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO
Cited by: 7
Author(s): Alexander H. Wilcox, Eric Delwart, Samuel L. Díaz‐Muñoz
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-26172-3

A correlative and quantitative imaging approach enabling characterization of primary cell-cell communication: Case of human CD4+ T cell-macrophage immunological synapses
Cited by: 2
Author(s): Richard Kasprowicz, Emma Rand, Peter O’Toole, Nathalie Signoret
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0246842

Effects of face masks on speech recognition in multi-talker babble noise
Cited by: 61
Author(s): Joseph C. Toscano, Cheyenne M. Toscano
Software Mentions: 2
Published: over 5 years ago

10.1093/gigascience/gix029

Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive
Cited by: 9
Author(s): Toshio Ohta, Takeru Nakazato, Hidemasa Bono
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-23502-3

Using spatial mark-recapture for conservation monitoring of grizzly bear populations in Alberta
Cited by: 25
Author(s): John Boulanger, Scott E. Nielsen, Gordon B. Stenhouse
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0200336

Effects of lobeglitazone on insulin resistance and hepatic steatosis in high-fat diet-fed mice
Cited by: 8
Author(s): Bong-Hoi Choi, Zhixin Jin, Chin-ok Yi, Juhong Oh, Eun Ae Jeong, Jong Youl Lee, Kyung Ah Park, Kyung Eun Kim, Jung Eun Lee, Hyun‐Jin Kim, Jong Ryeal Hahm, Gu Seob Roh
Software Mentions: 2
Published: over 8 years ago

10.1007/s13280-018-1070-7

Managing geese with recreational hunters?
Cited by: 5
Author(s): James H. Williams, Thorsten J. S. Balsby, Helle Ørsted Nielsen, Tommy Asferg, Jesper Madsen
Software Mentions: 2
Published: over 8 years ago

10.1007/s13280-017-0904-z

Examining adaptations to water stress among farming households in Sri Lanka’s dry zone
Cited by: 15
Author(s): Nigel Williams, Amanda R. Carrico
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-26947-8

Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens
Cited by: 37
Author(s): Fiona Paul, Jürgen Otte, Imke Schmitt, Francesco Dal Grande
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2020.569289

Improving the EMA Binding Test by Using Commercially Available Fluorescent Beads
Cited by: 5
Author(s): Andreas Glenthøj, Alaa Sharfo, Christian Brieghel, Amina Nardo‐Marino, Henrik Birgens, Jesper Petersen
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-27566-z

Biomimetic post-capillary venule expansions for leukocyte adhesion studies
Cited by: 9
Author(s): Bryan L. Benson, Lucy Li, Jay Myers, Rodney Dixon Dorand, Umut A. Gürkan, Alex Y. Huang, Richard M. Ransohoff
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0196440

The ecology of the Drosophila-yeast mutualism in wineries
Cited by: 32
Author(s): Allison S. Quan, Michael B. Eisen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-26768-9

RETRACTED ARTICLE: The Na/K-ATPase Oxidant Amplification Loop Regulates Aging
Cited by: 28
Author(s): Komal Sodhi, Alexandra Nichols, Amrita Mallick, Rebecca L. Klug, Jiang Liu, Xiaoliang Wang, Krithika Srikanthan, Perrine Goguet-Rubio, Athar Nawab, Rebecca Pratt, Megan N. Lilly, Juan Sanabria, Zijian Xie, Nader G. Abraham, Joseph I. Shapiro
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-28048-y

Butyrate produced by gut commensal bacteria activates TGF-beta1 expression through the transcription factor SP1 in human intestinal epithelial cells
Cited by: 124
Author(s): Camille Martin-Gallausiaux, Fabienne Béguet-Crespel, Ludovica Marinelli, Alexandre Jamet, Florence Ledue, Hervé M. Blottière, Nicolas Lapaque
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-28091-9

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin
Cited by: 86
Author(s): Allison E. Mann, Susanna Sabin, Kirsten A. Ziesemer, Åshild J. Vågene‬, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar‐García, Bruno Fröhlich, Mark Aldenderfer, Menno L. P. Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis, Johannes Krause, Corinne L. Hofman, Kirsten I. Bos, Christina Warinner
Software Mentions: 2
Published: over 8 years ago

10.3390/antiox10020235

Pan-Cancer Analysis Shows TP53 Mutations Modulate the Association of NOX4 with Genetic Programs of Cancer Progression and Clinical Outcome
Cited by: 8
Author(s): Feng Wang, Howard E. Boudreau, Thomas L. Leto
Software Mentions: 2
Published: over 5 years ago

10.1002/ctm2.32

Classification of gastric cancer by EBV status combined with molecular profiling predicts patient prognosis
Cited by: 8
Author(s): Caiyun He, Miaozhen Qiu, Xinhua Yang, Da‐Lei Zhou, Jingyi Ma, Ya-Kang Long, Zu‐Lu Ye, Baoshan Xu, Qi Zhao, Ying Jin, Shi-Xun Lu, Zhiqiang Wang, Wen‐Long Guan, Bin Zhao, Zhiwei Zhou, Jian Yong Shao, Rui‐hua Xu
Software Mentions: 2
Published: over 6 years ago

10.1245/s10434-021-09720-6

Impact of Smoking Status on Perioperative Morbidity, Mortality, and Long-Term Survival Following Transthoracic Esophagectomy for Esophageal Cancer
Cited by: 9
Author(s): Sivesh K Kamarajah, A Madhavan, Jakub Chmelo, M Navidi, Shajahan Wahed, A Immanuel, Nick Hayes, SM Griffin, Alexander W Phillips
Software Mentions: 2
Published: over 5 years ago

10.1264/jsme2.ME18108

Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome
Cited by: 6
Author(s): Takashi Narihiro, Masaru K. Nobu, Tomoyuki Hori, Tomo Aoyagi, Yuya Sato, Tomohiro Inaba, Hitoshi Aizawa, Hideyuki Tamaki, Hiroshi Habe
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-27657-x

Zebrafish mutants and TEAD reporters reveal essential functions for Yap and Taz in posterior cardinal vein development
Cited by: 37
Author(s): Matteo Astone, Jason Kuan Han Lai, Sirio Dupont, Didier Y. R. Stainier, Francesco Argenton, Andrea Vettori
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.03613

TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation
Cited by: 29
Author(s): Daniel Alpern, Diana Langer, Benoît Ballester, Stéphanie Le Gras, Christophe Romier, Gabrielle Mengus, Irwin Davidson
Software Mentions: 2
Published: about 12 years ago

10.1186/s12935-018-0673-1

MicroRNA-218-5p inhibits cell growth and metastasis in cervical cancer via LYN/NF-κB signaling pathway
Cited by: 28
Author(s): Yunsheng Xu, Qiaojun He, Yiyi Lu, Fengxing Tao, Liang Zhao, Rongying Ou
Software Mentions: 2
Published: almost 8 years ago

10.1002/ajmg.b.32627

Delineating the psychiatric and behavioral phenotype of recurrent 2q13 deletions and duplications
Cited by: 15
Author(s): Kate Wolfe, Andrew McQuillin, Viola Alesi, Elise Labis, Peter Cutajar, Bruno Dallapiccola, Maria Lisa Dentici, Anne Dieux-Coëslier, Bénédicte Duban‐Bedu, Tina Duelund Hjortshøj, Himanshu Goel, Sara Loddo, Deborah Morrogh, Anne-Laure Mosca-Boidron, Antonio Novelli, Laurence Olivier-Faivre, J. M. R. Parker, Michael Parker, Christine Patch, Anna L. Pelling, Thomas Smol, Zeynep Tümer, Olivier Vanakker, Arie van Haeringen, Clémence Vanlerberghe, André Strydom, David Skuse, Nick Bass
Software Mentions: 2
Published: over 8 years ago

10.1186/s12935-021-01878-z

Knockdown of GTF2E2 inhibits the growth and progression of lung adenocarcinoma via RPS4X in vitro and in vivo
Cited by: 10
Author(s): Guoshu Bi, Donglin Zhu, Yunyi Bian, Yiwei Huang, Cheng Zhan, Yong Yang, Qun Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0181617

Understanding spearfishing in a coral reef fishery: Fishers’ opportunities, constraints, and decision-making
Cited by: 14
Author(s): Tyler Pavlowich, Anne R. Kapuscinski
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0234751

Perinatal risk factors for fecal antibiotic resistance gene patterns in pregnant women and their infants
Cited by: 15
Author(s): Andrea Sosa-Moreno, Sarah S. Comstock, Kameron Y. Sugino, Fui Enn Teng, Nigel Paneth, Yelena Davis, Rosemary Olivero, Rebecca Schein, Joel Maurer, Lixin Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2021.722915

Assessment of Alertness and Cognitive Performance of Closed Circuit Rebreather Divers With the Critical Flicker Fusion Frequency Test in Arctic Diving Conditions
Cited by: 5
Author(s): Wilhelm W. Piispanen, Richard V Lundell, Laura Tuominen, Anne Räisänen‐Sokolowski
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0233809

Heat stress reduces growth rate of red deer calf: Climate warming implications
Cited by: 13
Author(s): F. Javier Pérez‐Barbería, Andrés J. García, Jamil Cappelli, Tomás Landete‐Castillejos, Martina Pérez Serrano, Laureano Gallego
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29793-w

Nasal microbiota clusters associate with inflammatory response, viral load, and symptom severity in experimental rhinovirus challenge
Cited by: 48
Author(s): Markus J. Lehtinen, Ashley A. Hibberd, Sofia Männikkö, Nicolas Yeung, Tommi Kauko, Sofia D. Forssten, Liisa Lehtoranta, Sampo J. Lahtinen, Buffy Stahl, Anna Lyra, Ronald B. Turner
Software Mentions: 2
Published: over 8 years ago

10.1002/ajb2.1676

Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex
Cited by: 10
Author(s): Michael V. Ottenlips, Donald H. Mansfield, Sven Buerki, Mary Ann Feist, Stephen R. Downie, Steven Dodsworth, Félix Forest, Gregory M. Plunkett, James F. Smith
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0093258

RNA Sequence Reveals Mouse Retinal Transcriptome Changes Early after Axonal Injury
Cited by: 65
Author(s): Masayuki Yasuda, Yuji Tanaka, Morin Ryu, S. Tsuda, Toru Nakazawa
Software Mentions: 2
Published: over 12 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441