cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1128/mSystems.00905-19

Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments
Cited by: 21
Author(s): Asier Zaragoza-Solas, Francisco Rodrı́guez-Valera, Mario López‐Pérez
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00768-19

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
Cited by: 43
Author(s): Lauren Alteio, Frederik Schulz, Rekha Seshadri, Neha Varghese, William G Rodríguez-Reillo, Elizabeth Ryan, Danielle Goudeau, Stephanie A. Eichorst, Rex R. Malmstrom, Robert M. Bowers, Laura A. Katz, Jeffrey L. Blanchard, Tanja Woyke
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00910-19

Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus)
Cited by: 24
Author(s): Lishan Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, Jeffrey A. French
Software Mentions: 2
Published: over 6 years ago

10.3897/BDJ.5.e20577

Understory dominance and the new climax: Impacts of Japanese knotweed (Fallopia japonica) invasion on native plant diversity and recruitment in a riparian woodland
Cited by: 9
Author(s): Matthew Wilson, Anna Freundlich, Christopher T. Martine
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.5649

Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing
Cited by: 24
Author(s): Zhifang Zhou, Guanghui Ling, Ning Ding, Zhe Xun, Ce Zhu, Hong Hua, Xiaochi Chen
Software Mentions: 2
Published: almost 8 years ago

10.3897/BDJ.9.e67677

Morphometric variation in wolves and golden jackal in India (Mammalia, Carnivora)
Cited by: 5
Author(s): Yellapu Srinivas, Yadvendradev V. Jhala
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.8160

Rediscovery of Osteocephalus vilarsi (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog
Cited by: 9
Author(s): Miquéias Ferrão, Jiří Moravec, Leandro João Carneiro de Lima Moraes, Vinícius T. de Carvalho, Marcelo Gordo, Albertina P. Lima
Software Mentions: 2
Published: over 6 years ago

10.3897/BDJ.8.e52233

New insights from museum specimens: a case of Viviparidae (Caenogastropoda: Mollusca) in Iwakawa’s collection preserved in the National Museum of Nature and Science, Tokyo
Cited by: 1
Author(s): Takahito Saito, Osamu Kagawa
Software Mentions: 2
Published: over 5 years ago

10.3897/BDJ.9.e60665

Distribution of wild bee (Hymenoptera: Anthophila) and hoverfly (Diptera: Syrphidae) communities within farms undergoing ecological transition
Cited by: 1
Author(s): Grégoire Noël, Julie Bonnet, Sylvain Everaerts, Anouk Danel, Alix Calderan, Alexis de Liedekerke, Clotilde de Montpellier d'Annevoie, Frédéric Francis, Laurent Serteyn
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00125-20

Comparative Genomics and Metabolomics in the Genus Nocardia
Cited by: 38
Author(s): Daniel Männle, Shaun M. K. McKinnie, Shrikant Mantri, Kat Steinke, Zeyin Lu, Bradley S. Moore, Nadine Ziemert, Leonard Kaysser
Software Mentions: 2
Published: about 6 years ago

10.1007/s00239-018-9828-x

Triplet-Based Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics
Cited by: 8
Author(s): Gregory A. Babbitt, Erin E. Coppola, Jamie S. Mortensen, Patrick X. Ekeren, Cosmo Viola, Dallan Goldblatt, André O. Hudson
Software Mentions: 2
Published: over 8 years ago

10.1007/s00239-020-09951-3

Spatial Patterns of Gene Expression in Bacterial Genomes
Cited by: 13
Author(s): Daniella F. Lato, G. Brian Golding
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.8923

Dynamic changes in intestinal microbiota in young forest musk deer during weaning
Cited by: 6
Author(s): Yimeng Li, Minghui Shi, Tianxiang Zhang, Xin Hu, Baofeng Zhang, Sheng‐Quan Xu, Jianhong Ding, Defu Hu, Shuqiang Liu
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.23203

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Cited by: 171
Author(s): Sebastian Pott
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.42989

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA
Cited by: 46
Author(s): Sasha A. Langley, Karen H. Miga, Gary H. Karpen, Charles H. Langley
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.494

RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments
Cited by: 125
Author(s): Henning Seedorf, Sandra Kittelmann, Gemma Henderson, Peter H. Janssen
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.50325

Dullard-mediated Smad1/5/8 inhibition controls mouse cardiac neural crest cells condensation and outflow tract septation
Cited by: 14
Author(s): Jean-François Darrigrand, Mariana Valente, Glenda Comai, Pauline Martinez, Maxime Petit, Ryuichi Nishinakamura, Daniel S. Osório, Gilles Renault, Carmen Marchiol, Vanessa Ribes, Bruno Cadot
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.2910

The wild tomato speciesSolanum chilenseshows variation in pathogen resistance between geographically distinct populations
Cited by: 21
Author(s): Remco Stam, Daniela Scheikl, Aurélien Tellier
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.8176

Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: over 6 years ago

10.1186/s12957-021-02174-w

Identification and validation of three core genes in p53 signaling pathway in hepatitis B virus-related hepatocellular carcinoma
Cited by: 11
Author(s): Mingxue Yu, Wenli Xu, Yusheng Jie, Jiahui Pang, Siqi Huang, Jing Cao, Jiao Gong, Xinhua Li, Yutian Chong
Software Mentions: 2
Published: over 5 years ago

10.1007/s00268-017-4235-9

Recovery of Voice After Reconstruction of the Recurrent Laryngeal Nerve and Adjuvant Nimodipine
Cited by: 22
Author(s): Per Mattsson, Arvid Frostell, Gunnar Björck, Jonas Persson, Ramil Hakim, Jan Zedenius, Mikael Svensson
Software Mentions: 2
Published: over 8 years ago

10.1186/s40413-018-0212-5

Comparison of microbiota and allergen profile in house dust from homes of allergic and non-allergic subjects- results from the GUSTO study
Cited by: 16
Author(s): Evelyn Xiu Ling Loo, Lamony Jian Ming Chew, A Zulkifli, Le Duc Huy Ta, I-Chun Kuo, Angela Goh, Oon Hoe Teoh, Hugo Van Bever, Peter D. Gluckman, Fabian Yap, Kok Hian Tan, Yap Seng Chong, Bee Wah Lee, Lynette Pei‐Chi Shek
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.55081

Brain functional networks associated with social bonding in monogamous voles
Cited by: 15
Author(s): M. Fernanda López-Gutiérrez, Zeus Gracia-Tabuenca, Juan José Ortiz, F. Camacho, Larry J. Young, Raúl G. Paredes, Néstor Fabián Díaz, Wendy Portillo, Sarael Alcauter
Software Mentions: 2
Published: over 5 years ago

10.12688/wellcomeopenres.15304.3

Representing antibiotic relationships using measurements of efficacy against clinical isolates
Cited by: 1
Author(s): Liam P. Shaw
Software Mentions: 2
Published: almost 6 years ago

10.12688/wellcomeopenres.15452.1

Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites
Cited by: 10
Author(s): Andrew W. Pountain, Michael P. Barrett
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.66395

Mutation analysis links angioimmunoblastic T-cell lymphoma to clonal hematopoiesis and smoking
Cited by: 15
Author(s): Shuhua Cheng, Wei Zhang, Giorgio Inghirami, Wayne Tam
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.wroa.2020.100051

Practical implementation of true on-site water recycling systems for hand washing and toilet flushing
Cited by: 10
Author(s): Eva Reynaert, Esther E. Greenwood, Bonginkosi Ndwandwe, Michel E. Riechmann, Rebecca Sindall, Kai M. Udert, Eberhard Morgenroth
Software Mentions: 2
Published: over 6 years ago

10.3390/bs11040051

Cognition across the Lifespan: Investigating Age, Sex, and Other Sociodemographic Influences
Cited by: 8
Author(s): Emily S. Nichols, Conor Wild, Adrian M. Owen, Andrea Soddu
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.54309

Caenorhabditis elegans nuclear RNAi factor SET-32 deposits the transgenerational histone modification, H3K23me3
Cited by: 28
Author(s): Lianna Schwartz-Orbach, Chenzhen Zhang, Simone Sidoli, Richa Amin, Diljeet Kaur, Anna Zhebrun, Julie Zhouli Ni, Sam Guoping Gu
Software Mentions: 2
Published: about 6 years ago

10.3390/v13081443

A Mortality-Based Description of EHDV and BTV Prevalence in Farmed White-Tailed Deer (Odocoileus virginianus) in Florida, USA
Cited by: 8
Author(s): Sydney L. Cottingham, Zoe S. White, Samantha M. Wisely, Juan M. Campos-Krauer
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.55744

Host-induced spermidine production in motile Pseudomonas aeruginosa triggers phagocytic uptake
Cited by: 5
Author(s): Sebastian Felgner, Matthias Preuße, Ulrike Beutling, Stephanie Stahnke, Vinay Pawar, Manfred Rohde, Mark Brönstrup, Theresia E. B. Stradal, Susanne Häußler
Software Mentions: 2
Published: almost 6 years ago

10.3390/v13071276

African Swine Fever and Its Epidemiological Course in Lithuanian Wild Boar
Cited by: 14
Author(s): Katja Schulz, Marius Masiulis, Christoph Staubach, Alvydas Malakauskas, Gediminas Pridotkas, Franz J. Conraths, Carola Sauter‐Louis
Software Mentions: 2
Published: about 5 years ago

10.3758/s13428-020-01527-9

Samply: A user-friendly smartphone app and web-based means of scheduling and sending mobile notifications for experience-sampling research
Cited by: 9
Author(s): Yury Shevchenko, Tim Kuhlmann, Ulf‐Dietrich Reips
Software Mentions: 2
Published: over 5 years ago

10.3390/v13061087

Replication Kinetics of B.1.351 and B.1.1.7 SARS-CoV-2 Variants of Concern Including Assessment of a B.1.1.7 Mutant Carrying a Defective ORF7a Gene
Cited by: 31
Author(s): Alyssa T. Pyke, Neelima Nair, Andrew van den Hurk, Peter Burtonclay, Son Hoang Nguyen, Jean Barcelon, Carol Kistler, Sanmarié Schlebusch, Jamie McMahon, Frederick Moore
Software Mentions: 2
Published: about 5 years ago

10.3390/v13030495

Genome Sequence of the Bacteriophage CL31 and Interaction with the Host Strain Corynebacterium glutamicum ATCC 13032
Cited by: 2
Author(s): Max Hünnefeld, Ulrike Viets, Vikas Sharma, Astrid Wirtz, Aël Hardy, Julia Frunzke
Software Mentions: 2
Published: over 5 years ago

10.3390/v13030394

The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense
Cited by: 25
Author(s): Cem Azgari, Zeynep Kilinc, Berk Turhan, Defne Circi, Ogün Adebali
Software Mentions: 2
Published: over 5 years ago

10.3390/v13020193

Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis
Cited by: 10
Author(s): Marta Canuti, Joost T. P. Verhoeven, Hannah J. Munro, Sheena Roul, Davor Ojkić, Gregory J. Robertson, Hugh Whitney, Suzanne C. Dufour, Andrew S. Lang
Software Mentions: 2
Published: over 5 years ago

10.5334/jors.243

A Figure One Web Tool for Visualization of Experimental Designs
Cited by: 1
Author(s): Foo Cheung
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.38517

Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription
Cited by: 24
Author(s): Clémence Hocquet, Xavier Robellet, Laurent Modolo, Xi‐Ming Sun, Claire Burny, Sara Cuylen-Haering, Esther Toselli, Sandra Clauder‐Münster, Lars M. Steinmetz, Christian H. Haering, Samuel Marguerat, Pascal Bernard
Software Mentions: 2
Published: almost 8 years ago

10.1093/beheco/arw119

Exploration is dependent on reproductive state, not social state, in a cooperatively breeding bird
Cited by: 5
Author(s): Hannah A. Edwards, Hannah L. Dugdale, David S. Richardson, Jan Komdeur, Terry Burke
Software Mentions: 2
Published: about 10 years ago

10.3390/v13010103

Surveillance and Genetic Characterization of Virulent Newcastle Disease Virus Subgenotype V.3 in Indigenous Chickens from Backyard Poultry Farms and Live Bird Markets in Kenya
Cited by: 10
Author(s): Henry M. Kariithi, Helena Lage Ferreira, Catharine N. Welch, Leonard O. Ateya, Auleria Ajiambo Apopo, Richard Zoller, Jeremy D. Volkening, Dawn Williams-Coplin, Darren J. Parris, Tim L. Olivier, Dana Goldenberg, Yatinder S. Binepal, Sonia M. Hernández, Claudio L. Afonso, David L. Suarez
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.31579

Two complement receptor one alleles have opposing associations with cerebral malaria and interact with α+thalassaemia
Cited by: 21
Author(s): D. Herbert Opi, Olivia Swann, Alexander Macharia, Sophie Uyoga, Gavin Band, Carolyne Ndila, Ewen M Harrison, Mahamadou A. Thera, Abdoulaye K. Koné, Dapa A. Diallo, Ogobara K. Doumbo, Kirsten E. Lyke, Christopher V. Plowe, Joann M. Moulds, Shebe Mohammed, Neema Mturi, Norbert Peshu, Kathryn Maitland, Rayaz Ahmed, Dominic P. Kwiatkowski, Kirk A. Rockett, Thomas N. Williams, J. Alexandra Rowe
Software Mentions: 2
Published: over 8 years ago

10.3390/v12121414

Multiple Introductions Followed by Ongoing Community Spread of SARS-CoV-2 at One of the Largest Metropolitan Areas of Northeast Brazil
Cited by: 45
Author(s): Marcelo Henrique Santos Paiva, Duschinka Ribeiro Duarte Guedes, Cássia Docena, Matheus Filgueira Bezerra, Filipe Zimmer Dezordi, Laís Ceschini Machado, Larissa Krokovsky, Elisama Helvécio, Alexandre Freitas da Silva, Luydson Richardson Silva Vasconcelos, Antônio Mauro Rezende, Severino Jefferson Ribeiro da Silva, Kamila Gaudêncio da Silva Sales, Bruna Santos Lima Figueiredo de Sá, Derciliano Lopes da Cruz, Claudio Eduardo Cavalcanti, Armando de Menezes-Neto, Caroline Targino Alves da Silva, Renata Pessôa Germano Mendes, Maria Almerice Lopes da Silva, Tiago Gräf, Paola Cristina Resende, Gonzalo Bello, Michelle da Silva Barros, Wheverton Ricardo Correia do Nascimento, Rodrigo Moraes Loyo, Luciane Caroline Albuquerque Bezerra, Sinval Pinto Brandão-Filho, Constância Flávia Junqueira Ayres, Gabriel Luz Wallau
Software Mentions: 2
Published: over 5 years ago

10.3390/v12111264

A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway
Cited by: 8
Author(s): Mosè Manni, Evgeny M. Zdobnov
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.57417

Integration of IL-2 and IL-4 signals coordinates divergent regulatory T cell responses and drives therapeutic efficacy
Cited by: 23
Author(s): Julie Y. Zhou, Carlos Álvarez, Brian A. Cobb
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.63595

Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation
Cited by: 21
Author(s): Pengfei Xu, Haoze V Yu, Kuo-Chang Tseng, Mackenzie Flath, Péter Fábián, Neil Segil, J. Gage Crump
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.58124

Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons
Cited by: 11
Author(s): Feline W Lindhout, Robbelien Kooistra, Sybren Portegies, Lotte J Herstel, Riccardo Stucchi, L. Basten Snoek, AF Maarten Altelaar, Harold D. MacGillavry, Corette J. Wierenga, Casper C. Hoogenraad
Software Mentions: 2
Published: almost 6 years ago

10.3390/v12090948

Identification and Prevalence of Phascolarctid Gammaherpesvirus Types 1 and 2 in South Australian Koala Populations
Cited by: 2
Author(s): Vasilli Kasimov, Tamsyn Stephenson, Natasha Speight, Anne‐Lise Chaber, Wayne Boardman, Ruby Easther, Farhid Hemmatzadeh
Software Mentions: 2
Published: almost 6 years ago

10.3390/v12070758

Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses
Cited by: 2
Author(s): Keylie M. Gibson, Margaret C. Steiner, Uzma Rentia, Matthew L. Bendall, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 2
Published: about 6 years ago

10.3390/v12050560

Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data
Cited by: 27
Author(s): Margaret C. Steiner, Keylie M. Gibson, Keith A. Crandall
Software Mentions: 2
Published: over 6 years ago

10.3390/v11080708

Genome of Alaskapox Virus, A Novel Orthopoxvirus Isolated from Alaska
Cited by: 31
Author(s): Crystal M. Gigante, Jinxin Gao, Shiyuyun Tang, Andrea M. McCollum, Kimberly Wilkins, Mary G. Reynolds, Whitni Davidson, Joseph McLaughlin, Victoria A. Olson, Li Yu
Software Mentions: 2
Published: about 7 years ago

10.3390/v11070649

Evaluation of an Immunochromatographic Assay as a Canine Rabies Surveillance Tool in Goa, India
Cited by: 19
Author(s): Gowri Yale, Andrew D Gibson, Reeta Subramaniam Mani, Pulleri Kandi Harsha, Niceta Cunha Costa, Julie Corfmat, Ilona Otter, Nigel Otter, Ian Handel, Barend Mark de Clare Bronsvoort, Richard J. Mellanby, Santosh Desai, Vilas Naik, Luke Gamble, Stella Mazeri
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.47615

Endangered wild salmon infected by newly discovered viruses
Cited by: 60
Author(s): Gideon Mordecai, Kristina M. Miller, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Tobi J. Ming, Shaorong Li, Amy Tabata, Amy K. Teffer, David A. Patterson, H. W. Ferguson, Curtis A. Suttle
Software Mentions: 2
Published: almost 7 years ago

10.3390/v10060308

The E. coli Global Regulator DksA Reduces Transcription during T4 Infection
Cited by: 9
Author(s): Jennifer Patterson-West, Tamara D. James, Llorenç Fernández-Coll, James R. Iben, Kyung Ho Moon, Leslie Knipling, Michael Cashel, Deborah M. Hinton
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.54868

Pattern regulation in a regenerating jellyfish
Cited by: 28
Author(s): Chiara Sinigaglia, Sophie Péron, Jeanne Eichelbrenner, Sandra Chevalier, Julia Steger, Carine Barreau, Evelyn Houliston, Lucas Leclère
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12905-019-0825-z

Spanish validation of female condom attitude scale and female condom use in Colombian young women
Cited by: 3
Author(s): Pablo Vallejo‐Medina, Ramírez Carlos Eduardo, Saavedra-Roa Diego Alejandro, Mayra Gómez-Lugo, Claudia Pérez-Durán
Software Mentions: 2
Published: almost 7 years ago

10.1093/ve/veaa085

HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification
Cited by: 4
Author(s): Nicolaas Christiaan Kist, Ben Lambert, Samuel Campbell, Aris Katzourakis, Daniel Lunn, Philippe Lemey, Astrid K. N. Iversen
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.05124

The equatorial position of the metaphase plate ensures symmetric cell divisions
Cited by: 17
Author(s): Chia Huei Tan, Ivana Gasic, Sabina P. Huber‐Reggi, Damian Dudka, Marin Barišić, Hélder Maiato, Patrick Meraldi
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2018.01566

Mechanical Effects of Cellulose, Xyloglucan, and Pectins on Stomatal Guard Cells of Arabidopsis thaliana
Cited by: 20
Author(s): Hojae Yi, Yue Rui, Baris Kandemir, James Wang, Charles T. Anderson, Virendra M. Puri
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2017.01142

Molecular Mechanisms behind the Physiological Resistance to Intense Transient Warming in an Iconic Marine Plant
Cited by: 47
Author(s): Lázaro Marín-Guirao, Laura Entrambasaguas, Emanuela Dattolo, Juan Manuel García Ruiz, Gabriele Procaccini
Software Mentions: 2
Published: about 9 years ago

10.1534/g3.119.400743

Evaluation ofSaccharomyces cerevisiaeWine Yeast Competitive Fitness in Enologically Relevant Environments by Barcode Sequencing
Cited by: 9
Author(s): Simon A. Schmidt, Radka Kolouchova, Angus H. Forgan, Anthony R. Borneman
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.630175

Comparing a Mixed Model Approach to Traditional Stability Estimators for Mapping Genotype by Environment Interactions and Yield Stability in Soybean [Glycine max (L.) Merr.]
Cited by: 4
Author(s): Mary Happ, George L. Graef, Haichuan Wang, Réka Howard, Luis Posadas, David L. Hyten
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.594681

UV-B Induced Flavonoids Contribute to Reduced Biotrophic Disease Susceptibility in Lettuce Seedlings
Cited by: 13
Author(s): Emily R McLay, Ana Clara Pontaroli, Jason J. Wargent
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.58288

The host exosome pathway underpins biogenesis of the human cytomegalovirus virion
Cited by: 23
Author(s): Declan L. Turner, Denis V. Korneev, John Purdy, Alex de Marco, Rommel A. Mathias
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2020.00960

Redundant and Diversified Roles Among Selected Arabidopsis thaliana EXO70 Paralogs During Biotic Stress Responses
Cited by: 11
Author(s): Tamara Pečenková, Andrea Potocká, Martin Potocký, Jitka Ortmannová, Matěj Drs, Edita Janková Drdová, Přemysl Pejchar, Lukáš Synek, Hana Soukupová, Viktor Žárský, Fatima Cvrčková
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2017.02106

Maize Yield and Planting Date Relationship: A Synthesis-Analysis for US High-Yielding Contest-Winner and Field Research Data
Cited by: 35
Author(s): Nguyen Viet Long, Yared Assefa, Raíssa Schwalbert, Ignacio A. Ciampitti
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.120.401372

Genome-Wide Characterization and Comparative Analysis of MYB Transcription Factors in Ganoderma Species
Cited by: 8
Author(s): Lining Wang, Qinghua Huang, Liulian Zhang, Qingfu Wang, Lei Liang, Baosheng Liao
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2012.00182

Conflict between Intrinsic Leaf Asymmetry and Phyllotaxis in the Resupinate Leaves of Alstroemeria psittacina
Cited by: 22
Author(s): Daniel H. Chitwood, Dan Naylor, Paradee Thammapichai, Axelle C. S. Weeger, Lauren R. Headland, Neelima Sinha
Software Mentions: 2
Published: over 14 years ago

10.3389/fpls.2020.00813

Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
Cited by: 16
Author(s): Fabian B. Haas, Noe Fernandez‐Pozo, Rabea Meyberg, Pierre‐François Perroud, Marco Göttig, Nora Stingl, Denis Saint-Marcoux, Jane A. Langdale, Stefan A. Rensing
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.699486

Genome-Wide Association Study of Vascular Bundle-Related Traits in Maize Stalk
Cited by: 3
Author(s): Yunxiao Zheng, Peng Hou, Linghua Zhu, Weibin Song, Lei Han, Yaqun Huang, Hong Wang, Jian-Wei Guo
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.596000

Nutraceutical Profiles of Two Hydroponically Grown Sweet Basil Cultivars as Affected by the Composition of the Nutrient Solution and the Inoculation With Azospirillum brasilense
Cited by: 16
Author(s): Šimun Kolega, Begoña Miras-Moreno, Valentina Buffagni, Luigi Lucini, Fabio Valentinuzzi, Mauro Maver, Tanja Mimmo, Marco Trevisan, Youry Pii, Stefano Cesco
Software Mentions: 2
Published: almost 6 years ago

10.1093/g3journal/jkaa035

Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12
Cited by: 1
Author(s): Peter I-Fan Wu, Curtis Ross, Deborah A. Siegele, James C. Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.656657

Identification of Small RNAs During High Light Acclimation in Arabidopsis thaliana
Cited by: 10
Author(s): Bhavika Tiwari, Kristin Habermann, Muhammad Arif, Oguz Top, Wolfgang Frank
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2019.00234

The Rpv3-3 Haplotype and Stilbenoid Induction Mediate Downy Mildew Resistance in a Grapevine Interspecific Population
Cited by: 42
Author(s): S. Vezzulli, G. Malacarne, Domenico Masuero, A. Vecchione, C. Dolzani, Vadim V. Goremykin, Zeraye Mehari Haile, Elisa Banchi, Riccardo Velasco, M. Stefanini, Urška Vrhovšek, L. Zulini, Pietro Franceschi, C. Moser
Software Mentions: 2
Published: over 7 years ago

10.1093/g3journal/jkab267

A candidate chromosome inversion in Arctic charr (Salvelinus alpinus) identified by population genetic analysis techniques
Cited by: 4
Author(s): Matthew C. Hale, Matthew A. Campbell, Garrett J. McKinney
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00472

Flavor-Related Quality Attributes of Ripe Tomatoes Are Not Significantly Affected Under Two Common Household Conditions
Cited by: 14
Author(s): Larissa Kanski, Marcel Naumann, Elke Pawelzik
Software Mentions: 2
Published: over 6 years ago

10.1007/s10120-018-0859-1

E-cadherin-deficient cells have synthetic lethal vulnerabilities in plasma membrane organisation, dynamics and function
Cited by: 25
Author(s): Tanis Godwin, S. Thomas Kelly, Tom P. Brew, Nicola Bougen-Zhukov, Andrew Single, Augustine Chen, Cassie E. Stylianou, Lawrence D. Harris, Sophie K. Currie, Bryony J. Telford, Henry Beetham, Gary B. Evans, Michael A. Black, Parry Guilford
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.63907

A cell atlas of the chick retina based on single-cell transcriptomics
Cited by: 66
Author(s): Masahito Yamagata, Wenjun Yan, Joshua R. Sanes
Software Mentions: 2
Published: over 5 years ago

10.3390/genes8080198

Analysis of Argonaute 4-Associated Long Non-Coding RNA in Arabidopsis thaliana Sheds Novel Insights into Gene Regulation through RNA-Directed DNA Methylation
Cited by: 18
Author(s): Phil Chi Khang Au, Elizabeth S. Dennis, Ming-Bo Wang
Software Mentions: 2
Published: about 9 years ago

10.3390/genes8120380

The Alteration of Nasopharyngeal and Oropharyngeal Microbiota in Children with MPP and Non-MPP
Cited by: 10
Author(s): Zhiwei Lü, Wenkui Dai, Yanhong Liu, Qian Zhou, Heping Wang, Dongfang Li, Zhenyu Yang, Yinhu Li, Guoli Xie, Shuai Cheng Li, Yuejie Zheng
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9010034

Dissection of Myogenic Differentiation Signatures in Chickens by RNA-Seq Analysis
Cited by: 11
Author(s): Tingting Li, Genxi Zhang, Pengfei Wu, Lian Duan, Guohui Li, Qiuhong Liu, Jinyu Wang
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.54097

A survey-based analysis of the academic job market
Cited by: 29
Author(s): Jason D Fernandes, Sarvenaz Sarabipour, Christopher T. Smith, Natalie M. Niemi, Nafisa M. Jadavji, Ariangela J. Kozik, Alex S. Holehouse, Vikas Pejaver, Orsolya Symmons, Alexandre W. Bisson‐Filho, Amanda Haage
Software Mentions: 2
Published: about 6 years ago

10.3390/genes9060274

Transitions from Single- to Multi-Locus Processes during Speciation with Gene Flow
Cited by: 26
Author(s): M. Schilling, Sean P. Mullen, Marcus R. Kronforst, Rebecca J. Safran, Patrik Nosil, Jeffrey L. Feder, Zachariah Gompert, Samuel M. Flaxman
Software Mentions: 2
Published: about 8 years ago

10.3390/genes9070356

An Evolutionary Mechanism for the Generation of Competing RNA Structures Associated with Mutually Exclusive Exons
Cited by: 12
Author(s): Timofei Ivanov, Dmitri D. Pervouchine
Software Mentions: 2
Published: about 8 years ago

10.3390/genes10030196

Cohesin-Mediated Genome Architecture Does Not Define DNA Replication Timing Domains
Cited by: 17
Author(s): Phoebe Oldach, Conrad A. Nieduszynski
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.687434

Evaluating the Aqueous Phase From Hydrothermal Carbonization of Cow Manure Digestate as Possible Fertilizer Solution for Plant Growth
Cited by: 15
Author(s): Silvia Celletti, Maximilian Lanz, Alex Bergamo, Vittoria Benedetti, Daniele Basso, Marco Baratieri, Stefano Cesco, Tanja Mimmo
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.665745

Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-β-Glucan and Starch Contents in Rice Whole Grain
Cited by: 5
Author(s): Rahele Panahabadi, Asadollah Ahmadikhah, Lauren S. McKee, Pär K. Ingvarsson, Naser Farrokhi
Software Mentions: 2
Published: almost 5 years ago

10.3390/genes10060431

Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?
Cited by: 6
Author(s): Laura M Boggs, Melissa Scheible, Gustavo Machado, Kelly A. Meiklejohn
Software Mentions: 2
Published: about 7 years ago

10.3390/genes10060409

The Red Fox Y-Chromosome in Comparative Context
Cited by: 6
Author(s): Halie M. Rando, William H. Wadlington, Jennifer L. Johnson, Jeremy Stutchman, Lyudmila N. Trut, Marta Farré, Anna V. Kukekova
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2020.562001

Functional Allium fistulosum Centromeres Comprise Arrays of a Long Satellite Repeat, Insertions of Retrotransposons and Chloroplast DNA
Cited by: 5
Author(s): Ilya Kirov, Sergey Odintsov, Murad Omarov, Sofya Gvaramiya, Pavel Merkulov, Maxim Dudnikov, Aleksey Ermolaev, Katrijn Van Laere, A. A. Soloviev, Ludmila Khrustaleva
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2020.587528

Phenotypic Selection on Flower Color and Floral Display Size by Three Bee Species
Cited by: 12
Author(s): Johanne Brunet, Andrew J Flick, Austin A. Bauer
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10100800

Pollination Drop Proteome and Reproductive Organ Transcriptome Comparison in Gnetum Reveals Entomophilous Adaptation
Cited by: 7
Author(s): Chen Hou, Richard M. Saunders, Nan Deng, Tao Wan, Yingjuan Su
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10110860

Transcriptional Structure of Petunia Clock in Leaves and Petals
Cited by: 6
Author(s): Marta I. Terry, Marta Carrera-Alesina, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.57915

An analog to digital converter controls bistable transfer competence development of a widespread bacterial integrative and conjugative element
Cited by: 7
Author(s): Nicolas Carraro, Xavier Richard, Sandra Sulser, François Delavat, Christian Mazza, van der Peter Meer
Software Mentions: 2
Published: about 6 years ago

10.3390/genes10110891

Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses
Cited by: 10
Author(s): Hugo G Castelán-Sánchez, Paola Elorrieta, Pedro Romoacca, Arturo Liñan-Torres, José Luis Sierra, Ingrid Vera, Ramón Alberto Batista-García, Silvia Tenorio-Salgado, Gabriel Lizama-Uc, Ernesto Pérez‐Rueda, María Antonieta Quispe-Ricalde, Sonia Dávila-Ramos
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2021.621954

Effect of Grafting on Viral Resistance of Non-transgenic Plum Scion Combined With Transgenic PPV-Resistant Rootstock
Cited by: 9
Author(s): Tatiana N. Sidorova, Dmitry Miroshnichenko, Ilya Kirov, Alexander Pushin, Sergey Dolgov
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.29655

Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa
Cited by: 79
Author(s): Kathleen Greenham, Carmela R. Guadagno, Malia Gehan, Todd C. Mockler, Cynthia Weinig, B. E. Ewers, C. Robertson McClung
Software Mentions: 2
Published: about 9 years ago

10.3390/genes11030288

Transcriptomic Profiling of DAF-7/TGFβ Pathway Mutants in C. elegans
Cited by: 7
Author(s): Muhan Hu, David K. Crossman, Jeevan K. Prasain, Michael A. Miller, Rosa Serra
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11040366

Genomic and Transcriptomic Analysis Identified Novel Putative Cassava lncRNAs Involved in Cold and Drought Stress
Cited by: 18
Author(s): Rungaroon Suksamran, Treenut Saithong, Chinae Thammarongtham, Saowalak Kalapanulak
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2021.682134

A Comparison of Serum and Plasma Blood Collection Tubes for the Integration of Epidemiological and Metabolomics Data
Cited by: 29
Author(s): Jennie Sotelo-Orozco, Shin-Yu Chen, Irva Hertz‐Picciotto, Carolyn M. Slupsky
Software Mentions: 2
Published: about 5 years ago

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