cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0133794

Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World’s Marine Ecosystems
Cited by: 81
Author(s): Simon Jennings, Kate Collingridge
Software Mentions: 2
Published: almost 11 years ago

10.3390/v11080708

Genome of Alaskapox Virus, A Novel Orthopoxvirus Isolated from Alaska
Cited by: 31
Author(s): Crystal M. Gigante, Jinxin Gao, Shiyuyun Tang, Andrea M. McCollum, Kimberly Wilkins, Mary G. Reynolds, Whitni Davidson, Joseph McLaughlin, Victoria A. Olson, Li Yu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-52585-9

A Frailty Index based on clinical data to quantify mortality risk in dogs
Cited by: 27
Author(s): Tommaso Banzato, Giovanni Franzo, Roberta Di Maggio, Elisa Nicoletto, Silvia Burti, Matteo Cesari, Marco Canevelli
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0253970

Depth-dependent influence of biochar application on the abundance and community structure of diazotrophic under sugarcane growth
Cited by: 12
Author(s): Nyumah Fallah, Ziqi Yang, Muhammad Tayyab, Caifang Zhang, Ahmad Yusuf Abubakar, Zhongxu Lin, Ziqin Pang, Americ Allison, Hua Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1093/beheco/arw119

Exploration is dependent on reproductive state, not social state, in a cooperatively breeding bird
Cited by: 5
Author(s): Hannah A. Edwards, Hannah L. Dugdale, David S. Richardson, Jan Komdeur, Terry Burke
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0168183

Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis
Cited by: 8
Author(s): Daniela Beißer, Farnusch Kaschani, Nadine Graupner, Lars Großmann, Manfred Jensen, Sabrina Ninck, Florian Schulz, Sven Rahmann, Jens Boenigk, Markus Kaiser
Software Mentions: 2
Published: over 9 years ago

10.1186/s12968-016-0319-1

Effects of heart valve prostheses on phase contrast flow measurements in Cardiovascular Magnetic Resonance – a phantom study
Cited by: 12
Author(s): Johanna Richau, Matthias A. Dieringer, Julius Traber, Florian von Knobelsdorff‐Brenkenhoff, Andreas Greiser, Carsten Schwenke, Jeanette Schulz‐Menger
Software Mentions: 2
Published: over 9 years ago

10.1264/jsme2.ME18108

Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome
Cited by: 6
Author(s): Takashi Narihiro, Masaru K. Nobu, Tomoyuki Hori, Tomo Aoyagi, Yuya Sato, Tomohiro Inaba, Hitoshi Aizawa, Hideyuki Tamaki, Hiroshi Habe
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-77760-1

Dynamic changes in cell size and corresponding cell fate after optic nerve injury
Cited by: 4
Author(s): Benjamin Davis, Li Guo, Nivedita Ravindran, Ehtesham Shamsher, Veerle Baekelandt, Hannah Mitchell, Anil A. Bharath, Lies De Groef, M. Francesca Cordeiro
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0180761

Virological failure and all-cause mortality in HIV-positive adults with low-level viremia during antiretroviral treatment
Cited by: 48
Author(s): Olof Elvstam, Patrik Medstrand, Aylin Yilmaz, Per Erik Isberg, Magnus Gisslén, Per Björkman
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-53362-4

Steroid hormones in hair reveal sexual maturity and competition in wild house mice (Mus musculus domesticus)
Cited by: 16
Author(s): Esther H.D. Carlitz, Jan‐Niklas Runge, Barbara König, Lennart Winkler, Clemens Kirschbaum, Wei Gao, Anna K. Lindholm
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0216993

Identification of immune and metabolic predictors of severe hand-foot-mouth disease
Cited by: 10
Author(s): Luwei Qin, Dejian Dang, Xinhong Wang, Rongguang Zhang, Hongyan Feng, Jun Ren, Shuaiyin Chen, Guangyuan Zhou, Ping Huang, Bin Wang, Yang Xi, Weidong Wu, Yuefei Jin, Guangcai Duan
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-81257-w

Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle
Cited by: 10
Author(s): David P. Jacobson, Tanvi P. Honap, Andrew T. Ozga, Nicolas Méda, Thérèse Kagoné, Hélène Carabin, Paul Spicer, Raúl Y. Tito, Alexandra J. Obregón-Tito, Luis Marín Reyes, Luzmila Troncoso-Corzo, Emilio Guija-Poma, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0196652

Barley heads east: Genetic analyses reveal routes of spread through diverse Eurasian landscapes
Cited by: 47
Author(s): Diane Lister, Huw Jones, Hugo R. Oliveira, Cameron A. Petrie, Xinyi Liu, James Cockram, Catherine J. Kneale, Ольга Николаевна Ковалева, Martin K. Jones
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-53563-x

The Prognostic Significance of PDE7B in Cytogenetically Normal Acute Myeloid Leukemia
Cited by: 10
Author(s): Lu Cao, Weilong Zhang, Xiaoni Liu, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xue He, Hongmei Jing, Xiaoliang Yuan
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0129341

Analyses of Developmental Rate Isomorphy in Ectotherms: Introducing the Dirichlet Regression
Cited by: 11
Author(s): David S. Boukal, Tomáš Ditrich, Dmitry Kutcherov, Pavel Sroka, Pavla Dudová, Miroslav Papáček
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0212351

Short-term fish predation destroys resilience of zooplankton communities and prevents recovery of phytoplankton control by zooplankton grazing
Cited by: 28
Author(s): Zeynep Ersoy, Sandra Brucet, Mireia Bartrons, Thomas Mehner
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0062091

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii
Cited by: 85
Author(s): Christian Jessen, Javier Felipe Villa Lizcano, Till Bayer, Cornelia Roder, Manuel Aranda, Christian Wild, Christian R. Voolstra
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0217628

Macroscale abundance patterns of hydromedusae in the temperate Southwestern Atlantic (27°–56° S)
Cited by: 10
Author(s): M. Sofía Dutto, Carlo Javier Chazarreta, Claudia Rodríguez, Agustín Schiariti, Luciana Mabel Díaz Briz, Gabriel N. Genzano
Software Mentions: 2
Published: about 7 years ago

10.1155/2019/9749751

P4HB, a Novel Hypoxia Target Gene Related to Gastric Cancer Invasion and Metastasis
Cited by: 31
Author(s): Jun Zhang, Shuai Guo, Yue Wu, Zhichao Zheng, Yue Wang, Yan Zhao
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0202485

Assembly and comparative analysis of the complete mitochondrial genome sequence of Sophora japonica ‘JinhuaiJ2’
Cited by: 18
Author(s): Yancai Shi, Yang Liu, Shouzhou Zhang, Rong Zhou, Jialei Tang, Weixue Mu, Yang Peng, Shanshan Dong
Software Mentions: 2
Published: almost 8 years ago

10.1111/jcmm.15541

The ACE2 expression in Sertoli cells and germ cells may cause male reproductive disorder after SARS‐CoV‐2 infection
Cited by: 137
Author(s): Qiaoyan Shen, Xia Xiao, Aili Aierken, Wei Y, Xiaojie Wu, Mingzhi Liao, Jinlian Hua
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0230930

Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice
Cited by: 17
Author(s): Misako Tatehana, Reiji Kimura, Kentaro Mochizuki, Hitoshi Inada, Noriko Osumi
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0119161

Is There Still a French Eating Model? A Taxonomy of Eating Behaviors in Adults Living in the Paris Metropolitan Area in 2010
Cited by: 23
Author(s): Julien Riou, Thomas Lefèvre, Isabelle Parizot, Anne Lhuissier, Pierre Chauvin
Software Mentions: 2
Published: over 11 years ago

10.1155/2019/4602371

Investigation of the Clinical Significance and Prognostic Value of the lncRNA ACVR2B-As1 in Liver Cancer
Cited by: 14
Author(s): Yuanyuan Nie, Yan Jiao, Yanqing Li, Wei Li
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0175968

Peripheral huntingtin silencing does not ameliorate central signs of disease in the B6.HttQ111/+ mouse model of Huntington’s disease
Cited by: 12
Author(s): Sydney R. Coffey, Robert M. Bragg, Shawn Minnig, Seth A. Ament, Jeffrey P. Cantle, Anne Glickenhaus, Daniel Shelnut, José M. Carrillo, Dominic D. Shuttleworth, Julie Anne Rodier, Kimihiro Noguchi, C. Frank Bennett, Nathan D. Price, Holly Kordasiewicz, Jeffrey B. Carroll
Software Mentions: 2
Published: about 9 years ago

10.1038/s41398-021-01426-3

Characteristics of mental health implications and plasma metabolomics in patients recently recovered from COVID-19
Cited by: 11
Author(s): Lian Yang, Mei Zhou, Lingli Li, Ping Luo, Wenliang Fan, Jing Xu, Qing Chen, Feng Pan, Ping Lei, Chuansheng Zheng, Yang Jin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41398-021-01315-9

Attentive brain states in infants with and without later autism
Cited by: 11
Author(s): Anna Gui, Giorgia Bussu, Charlotte Tye, Mayada Elsabbagh, Greg Pasco, Tony Charman, Mark H. Johnson, Emily J. H. Jones
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0167434

Unique Molecular Patterns Uncovered in Kawasaki Disease Patients with Elevated Serum Gamma Glutamyl Transferase Levels: Implications for Intravenous Immunoglobulin Responsiveness
Cited by: 12
Author(s): Yue Wang, Zhen Li, Guang Hu, Shiying Hao, Xin Deng, Min Huang, Ran Miao, Xiyuan Jiang, John T. Kanegaye, Kee Soo Ha, JungHwa Lee, Xiaofeng Li, Xuejun Jiang, Yunxian Yu, Adriana H. Tremoulet, Jane C. Burns, John C. Whitin, Andrew Shin, Karl G. Sylvester, Doff B. McElhinney, Harvey J. Cohen, Xuefeng B. Ling
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0236228

Evaluation of nucleosome concentrations in healthy dogs and dogs with cancer
Cited by: 9
Author(s): Heather Wilson-Robles, Tasha Miller, Jill Jarvis, Jason Terrell, Nathan Dewsbury, Terry Kelly, Mariëlle Herzog, Thomas Bygott, Nathalie Hardat, Gaetan Michel
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0068436

The Carbohydrate Sensitive Rat as a Model of Obesity
Cited by: 12
Author(s): Nachiket A. Nadkarni, Catherine Chaumontet, Dalila Azzout‐Marniche, Julien Piedcoq, Gilles Fromentin, Daniel Tomé, Patrick C. Even
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0235989

Biogeography of the freshwater gastropod, Planorbella trivolvis, in the western United States
Cited by: 7
Author(s): Kelly Mack, Pieter T. J. Johnson, Jay Bowerman, Jingchun Li
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0226312

Significance of skull osteoporosis to the development of peritumoral brain edema after LINAC-based radiation treatment in patients with intracranial meningioma
Cited by: 2
Author(s): Ryang Hun Lee, Jae Min Kim, Jin Hwan Cheong, Je Il Ryu, Young Soo Kim, Myung Hoon Han
Software Mentions: 2
Published: over 6 years ago

10.1038/s41398-020-00980-6

Cortical thickness abnormalities in long-term remitted Cushing’s disease
Cited by: 12
Author(s): Stéphanie Bauduin, Zarah van der Pal, Alberto M. Pereira, Onno C. Meijer, Erik J. Giltay, Nic J.A. van der Wee, Steven J.A. van der Werff
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.16547

Prognostic value of tumour microenvironment‐related genes by TCGA database in rectal cancer
Cited by: 7
Author(s): Chao Li, Tao Liu, Yi Liu, Jiantao Zhang, Didi Zuo
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0204556

Alpha-amylase reactivity and recovery patterns in anhedonic young adults performing a tandem skydive
Cited by: 3
Author(s): Charlotte Vrijen, Eeske van Roekel, Albertine J. Oldehinkel
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0246842

Effects of face masks on speech recognition in multi-talker babble noise
Cited by: 61
Author(s): Joseph C. Toscano, Cheyenne M. Toscano
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79831-9

Multi-pronged approach to human mesenchymal stromal cells senescence quantification with a focus on label-free methods
Cited by: 11
Author(s): Weichao Zhai, Jerome Zu Yao Tan, Tobias Russell, Sixun Chen, Dennis McGonagle, May Win Naing, Derrick Yong, Elena Jones
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16709

USP11 degrades KLF4 via its deubiquitinase activity in liver diseases
Cited by: 14
Author(s): Hee‐Young Yang, Daeui Park, Jeong-ho Ryu, Tamina Park
Software Mentions: 2
Published: about 5 years ago

10.1038/s41398-020-00912-4

Dopamine manipulations modulate paranoid social inferences in healthy people
Cited by: 10
Author(s): Joseph M Barnby, Vaughan Bell, Quinton Deeley, Mitul A. Mehta
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40364-020-00227-y

Expression of p52, a non-canonical NF-kappaB transcription factor, is associated with poor ovarian cancer prognosis
Cited by: 5
Author(s): Demetra Hufnagel, Andrew J. Wilson, Jamie A. Saxon, Timothy S. Blackwell, Jaclyn C Watkins, Dineo Khabele, Marta A. Crispens, Fiona E. Yull, Alicia Beeghly–Fadiel
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0093258

RNA Sequence Reveals Mouse Retinal Transcriptome Changes Early after Axonal Injury
Cited by: 65
Author(s): Masayuki Yasuda, Yuji Tanaka, Morin Ryu, S. Tsuda, Toru Nakazawa
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0246510

Genome-wide association study on metabolite accumulation in a wild barley NAM population reveals natural variation in sugar metabolism
Cited by: 5
Author(s): Mathias Ruben Gemmer, Chris Richter, Thomas Schmutzer, Manish L. Raorane, Björn H. Junker, Klaus Pillen, Andreas Maurer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0257852

COVID-19 pandemic restrictions continuously impact on physical activity in adults with cystic fibrosis
Cited by: 6
Author(s): Thomas Radtke, Sarah R. Haile, Holger Dressel, Christian Benden
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0075192

Gastric Epithelial Expression of IL-12 Cytokine Family in Helicobacter pylori Infection in Human: Is it Head or Tail of the Coin?
Cited by: 14
Author(s): Fadi Al-Sammak, Thomas Kalinski, Sönke Weinert, Alexander Link, Thomas Wex, Peter Malfertheiner
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41398-019-0618-z

Polygenic burden associated to oligodendrocyte precursor cells and radial glia influences the hippocampal volume changes induced by aerobic exercise in schizophrenia patients
Cited by: 14
Author(s): Sergi Papiol, Daniel Keeser, Alkomiet Hasan, Thomas Schneider‐Axmann, Florian Raabe, Franziska Degenhardt, Moritz J. Rossner, Heike Bickeböller, Ludovico Cantuti-Castelvetri, Mikael Simons, Thomas Wobrock, Aurore Schmitt, Berend Malchow, Peter Falkai
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-54282-z

A stroma-corrected ZEB1 transcriptional signature is inversely associated with antitumor immune activity in breast cancer
Cited by: 17
Author(s): Christoph Block, Gregory Dyson, Ion J. Campeanu, Donovan Watza, Manohar Ratnam, Guojun Wu
Software Mentions: 2
Published: over 6 years ago

10.1038/srep14017

An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography
Cited by: 51
Author(s): Keitaro Yamashita, Dongqing Pan, Tomohiko Okuda, Michihiro Sugahara, Atsushi Kodan, Tomohiro Yamaguchi, Taichi Murai, Keiko Gomi, Naoki Kajiyama, Eiichi Mizohata, Mamoru Suzuki, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Jaehyun Park, Changyong Song, Takaki Hatsui, Makina Yabashi, So Iwata, Hiroaki Kato, Hideo Ago, Masaki Yamamoto, Toru Nakatsu
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep14929

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues
Cited by: 25
Author(s): Hironori Kawakami, Eiji Ohashi, Shota Kanamoto, Toshiki Tsurimoto, Tsutomu Katayama
Software Mentions: 2
Published: over 10 years ago

10.1038/srep16899

Quantifying the Impact of Scenic Environments on Health
Cited by: 69
Author(s): Chanuki Illushka Seresinhe, Tobias Preis, Helen Susannah Moat
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-020-78314-1

Sustained organic loading disturbance favors nitrite accumulation in bioreactors with variable resistance, recovery and resilience of nitrification and nitrifiers
Cited by: 9
Author(s): Ezequiel Santillan, W. X. Phua, Florentin Constancias, Stefan Wuertz
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79438-0

Incorporating human mobility data improves forecasts of Dengue fever in Thailand
Cited by: 29
Author(s): Mathew V. Kiang, Mauricio Santillana, Jarvis T. Chen, Jukka‐Pekka Onnela, Nancy Krieger, Kenth Engø‐Monsen, Nattwut Ekapirat, Darin Areechokchai, Preecha Prempree, Richard J. Maude, Caroline O. Buckee
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-54819-2

The consequences of Brugia malayi infection on the flight and energy resources of Aedes aegypti mosquitoes
Cited by: 8
Author(s): Alastair G. T. Somerville, Katherine Gleave, Christopher M. Jones, Lisa J. Reimer
Software Mentions: 2
Published: over 6 years ago

10.1038/srep20650

Feature co-localization landscape of the human genome
Cited by: 11
Author(s): Siu-Kin Ng, Taobo Hu, Xi Long, Colin Chan, Suk Ying Tsang, Hong Xue
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0244468

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals
Cited by: 17
Author(s): Harshavardhan Doddapaneni, Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, Vasanthi Avadhanula, Hsu Chao, Vipin Menon, Erin Nicholson, David Henke, Felipe-Andrés Piedra, Anubama Rajan, Zeineen Momin, Kavya Kottapalli, Kristi L. Hoffman, Fritz J. Sedlazeck, Ginger Metcalf, Pedro A. Piedra, Donna M. Muzny, Joseph F. Petrosino, Richard A. Gibbs
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0189999

HIV-1 envelope sequence-based diversity measures for identifying recent infections
Cited by: 8
Author(s): Alexis Kafando, Éric Fournier, Bouchra Serhir, Christine Martineau, Florence Doualla-Bell, Mohamed N'dongo Sangaré, Mohamed Sylla, Annie Chamberland, Mohamed El-Far, Hugues Charest, Cécile Tremblay
Software Mentions: 2
Published: over 8 years ago

10.3390/v12050560

Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data
Cited by: 27
Author(s): Margaret C. Steiner, Keylie M. Gibson, Keith A. Crandall
Software Mentions: 2
Published: about 6 years ago

10.1038/s41398-019-0599-y

Attention-deficit hyperactivity disorder shares copy number variant risk with schizophrenia and autism spectrum disorder
Cited by: 72
Author(s): Ólafur Ó. Guðmundsson, G. Bragi Walters, Andrés Ingason, Stefan Johansson, Tetyana Zayats, Lavinia Athanasiu, Ida Elken Sønderby, Ómar Gústafsson, Muhammad Sulaman Nawaz, Guðbjörn F. Jónsson, Lina Jönsson, Per-Morten Knappskog, Ester Ingvarsdottir, Katrín Davíðsdóttir, Srdjan Djurovic, Gun Peggy Knudsen, Ragna Bugge Askeland, Gyða S. Haraldsdóttir, Gísli Baldursson, Páll Magnússon, Engilbert Sigurðsson, Daníel F. Guðbjartsson, Hreinn Stefánsson, Ole A. Andreassen, Jan Haavik, Ted Reichborn‐Kjennerud, Kāri Stefánsson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0132999

A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.)
Cited by: 26
Author(s): José Vladimir Sandoval-Sierra, Javier Diéguez-Uribeondo
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep23173

Spatiotemporal transcriptome provides insights into early fruit development of tomato (Solanum lycopersicum)
Cited by: 37
Author(s): Shuaibin Zhang, Meng Xu, Zhengkun Qiu, Ketao Wang, Yan Du, Lianfeng Gu, Xia Cui
Software Mentions: 2
Published: over 10 years ago

10.3390/biology10080782

Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Cited by: 105
Author(s): Zaki Saati‐Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-77564-3

IL-10 based immunomodulation initiated at birth extends lifespan in a familial mouse model of amyotrophic lateral sclerosis
Cited by: 4
Author(s): Michael R. Strickland, Kristen R. Ibanez, Mariya Yaroshenko, Carolina Ceballos Diaz, David R. Borchelt, Paramita Chakrabarty
Software Mentions: 2
Published: over 5 years ago

10.1038/tp.2015.214

Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns
Cited by: 129
Author(s): José Vicente Sánchez-Mut, Holger Heyn, Enrique Vidal, Sebastian Morán, Sergi Sayols, Raúl Delgado-Morales, Matthew D. Schultz, Belén Ansoleaga, Paula Garcia‐Esparcia, Meritxell Pons-Espinal, María Martínez de Lagrán, Joaquín Dopazo, Alberto Rábano, Jesús Ávila, Mara Dierssen, Ira T. Lott, Isidre Ferrer, Joseph R. Ecker, Manel Esteller
Software Mentions: 2
Published: over 10 years ago

10.1038/srep22958

Bacterial communities of the cotton aphid Aphis gossypii associated with Bt cotton in northern China
Cited by: 42
Author(s): Yao Zhao, Shuai Zhang, Junyu Luo, Chunyi Wang, Limin Lv, Jinjie Cui
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0186040

De novo transcriptome sequencing of Isaria cateniannulata and comparative analysis of gene expression in response to heat and cold stresses
Cited by: 9
Author(s): Wang Ding-feng, Liangde Li, Guojun Wu, Liette Vasseur, Guang Yang, Pengrong Huang
Software Mentions: 2
Published: over 8 years ago

10.3390/biology8020021

Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
Cited by: 1
Author(s): Waraporn Kraitavin, Kazutoshi Yoshitake, Yoji Igarashi, Susumu Mitsuyama, Shigeharu Kinoshita, Daisuke Kambayashi, Shugo Watabe, Shuichi Asakawa
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.5507

Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing
Cited by: 17
Author(s): Monia Teresa Russo, Riccardo Aiese Cigliano, Walter Sanseverino, Maria Immacolata Ferrante
Software Mentions: 2
Published: over 7 years ago

10.1038/srep26371

The molecular spectrum and distribution of haemoglobinopathies in Cyprus: a 20-year retrospective study
Cited by: 33
Author(s): Petros Kountouris, Ioanna Kousiappa, Thessalia Papasavva, George Christopoulos, Eleni Pavlou, Miranda Petrou, Xenia Feleki, Eleni Karitzie, Marios Phylactides, Pavlos Fanis, Carsten W. Lederer, Andriani Kyrri, Eleni Kalogerou, Christiana Makariou, Christiana Ioannou, Loukas Kythreotis, Georgia Hadjilambi, Nicoletta Andreou, Evangelia Pangalou, Irene Savvidou, Michael Angastiniotis, Michael Hadjigavriel, Maria Sitarou, Annita Kolnagou, Marina Kleanthous, Soteroula Christou
Software Mentions: 2
Published: about 10 years ago

10.1038/srep26311

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene
Cited by: 70
Author(s): Seth Schobel, Karla M. Stucker, Martin L. Moore, Larry J. Anderson, Emma K. Larkin, Jyoti Shankar, Jayati Bera, Vinita Puri, Meghan H. Shilts, Christian Rosas‐Salazar, Rebecca Halpin, Nadia Fedorova, Susmita Shrivastava, Timothy B. Stockwell, R. Stokes Peebles, Tina V. Hartert, Suman Das
Software Mentions: 2
Published: about 10 years ago

10.3390/biology9080183

Preliminary Assessment of Microbial Community Structure of Wind-Tidal Flats in the Laguna Madre, Texas, USA
Cited by: 12
Author(s): I‐Shuo Huang, Lee J. Pinnell, John Turner, Hussain Abdulla, Lauren Boyd, Eric W. Linton, Paul V. Zimba
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0202211

How often do general practitioners use placebos and non-specific interventions? Systematic review and meta-analysis of surveys
Cited by: 39
Author(s): Klaus Linde, Oxana Atmann, Karin Meißner, Antonius Schneider, Richard Meister, Levente Kriston, Christoph Werner
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0234771

A herbicide resistance risk assessment for weeds in wheat and barley crops in New Zealand
Cited by: 20
Author(s): Zachary Ngow, R. J. Chynoweth, Matilda Gunnarsson, M. P. Rolston, Christopher E. Buddenhagen
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0134465

HdhQ111 Mice Exhibit Tissue Specific Metabolite Profiles that Include Striatal Lipid Accumulation
Cited by: 20
Author(s): Jeffrey B. Carroll, Amy Deik, Elisa Fossale, Rory M. Weston, Jolene R. Guide, Jamshid Arjomand, Seung Kwak, Clary B. Clish, Marcy E. MacDonald
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0172918

Long-term genetic selection reduced prevalence of hip and elbow dysplasia in 60 dog breeds
Cited by: 40
Author(s): Anita M. Oberbauer, G.G. Keller, Thomas R. Famula
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-55344-y

West Asian sources of the Eurasian component in Ethiopians: a reassessment
Cited by: 13
Author(s): Ludovica Molinaro, Francesco Montinaro, Burak Yelmen, Davide Marnetto, Doron M. Behar, Toomas Kivisild, Luca Pagani
Software Mentions: 2
Published: over 6 years ago

10.3390/v12070758

Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses
Cited by: 2
Author(s): Keylie M. Gibson, Margaret C. Steiner, Uzma Rentia, Matthew L. Bendall, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 2
Published: almost 6 years ago

10.3390/toxins13090652

Validation and Application of a Low-Cost Sorting Device for Fumonisin Reduction in Maize
Cited by: 4
Author(s): William C. Stafstrom, Julie A. Wushensky, John Fuchs, Wenwei Xu, Nnenna Ezera, Rebecca Nelson
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep30164

SCUBA divers as oceanographic samplers: The potential of dive computers to augment aquatic temperature monitoring
Cited by: 29
Author(s): Serena Wright, Tom Hull, D. B. Sivyer, David J. Pearce, John K. Pinnegar, Martin Sayer, Andrew O.M. Mogg, Elaine Azzopardi, Steve Gontarek, Kieran Hyder
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0188522

Can narrow-bandwidth light from UV-A to green alter secondary plant metabolism and increase Brassica plant defenses against aphids?
Cited by: 20
Author(s): Ole Rechner, Susanne Neugart, Monika Schreiner, Sasa Wu, Hans‐Michael Poehling
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0228645

Machine learning models for net photosynthetic rate prediction using poplar leaf phenotype data
Cited by: 13
Author(s): Xiaoyu Zhang, Ziyuan Huang, Xue‐Hui Su, Andrew M. H. Siu, Yuepeng Song, Deqiang Zhang, Qing Fang
Software Mentions: 2
Published: over 6 years ago

10.3390/toxins13080509

Differing Effects of Vinegar on Pelagia noctiluca (Cnidaria: Scyphozoa) and Carybdea marsupialis (Cnidaria: Cubozoa) Stings—Implications for First Aid Protocols
Cited by: 7
Author(s): Ainara Ballesteros, Macarena Marambio, Verónica Fuentes, Mridvika Narda, Andreu Santín, Josep-Marı́a Gili
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep31857

High-fat diet disrupts metabolism in two generations of rats in a parent-of-origin specific manner
Cited by: 35
Author(s): Thomas K. Chambers, Michael D. Morgan, Andreas Heger, Richard M. Sharpe, Amanda J. Drake
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32027

Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients
Cited by: 12
Author(s): Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Anita M A C Trapman-Jansen, Renée Foekens, Maxime P. Look, Marcel Smid, Carolien H.M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 2
Published: almost 10 years ago

10.3390/biology10060460

Bone Diagenesis in Short Timescales: Insights from an Exploratory Proteomic Analysis
Cited by: 11
Author(s): Noemi Procopio, Caley Mein, Sefora Starace, Andrea Bonicelli, Anna Williams
Software Mentions: 2
Published: about 5 years ago

10.1016/j.wroa.2020.100051

Practical implementation of true on-site water recycling systems for hand washing and toilet flushing
Cited by: 10
Author(s): Eva Reynaert, Esther E. Greenwood, Bonginkosi Ndwandwe, Michel E. Riechmann, Rebecca Sindall, Kai M. Udert, Eberhard Morgenroth
Software Mentions: 2
Published: about 6 years ago

10.1038/srep32598

Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Cited by: 2
Author(s): Xu Zhang, Zhilin Qu, Bing Su
Software Mentions: 2
Published: almost 10 years ago

10.3390/toxins12090553

A Functional ClpXP Protease is Required for Induction of the Accessory Toxin Genes, tst, sed, and sec
Cited by: 8
Author(s): Jenny Schelin, Marianne Thorup Cohn, Barbro Frisk, Dorte Frees
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0107721

Interpretation of Appearance: The Effect of Facial Features on First Impressions and Personality
Cited by: 41
Author(s): Karin Marie Brandt Wolffhechel, Jens Fagertun, Ulrik Plesner Jacobsen, Wiktor Majewski, Astrid Sofie Hemmingsen, Catrine Lohmann Larsen, Sofie Katrine Lorentzen, Hanne Østergaard Jarmer
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0240449

The plasma lipidome of the Quaker parrot (Myiopsitta monachus)
Cited by: 6
Author(s): Hugues Beaufrère, Sara Gardhouse, Richard D. Wood, Ken D. Stark
Software Mentions: 2
Published: over 5 years ago

10.1136/bmjdrc-2020-001950

Development of a predictive risk model for all-cause mortality in patients with diabetes in Hong Kong
Cited by: 15
Author(s): Sharen Lee, Jiandong Zhou, Keith Sai Kit Leung, William Ka Kei Wu, Wing Tak Wong, Tong Liu, Ian Chi Kei Wong, Kamalan Jeevaratnam, Qingpeng Zhang, Gary Tse
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0171781

Interpretation of metabolic memory phenomenon using a physiological systems model: What drives oxidative stress following glucose normalization?
Cited by: 9
Author(s): Veronika Voronova, Kirill Zhudenkov, Gabriel Helmlinger, Kirill Peskov
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0127234

Effort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils
Cited by: 31
Author(s): Zewei Song, Dan Schlatter, Peter G. Kennedy, Linda L. Kinkel, H. Corby Kistler, Nhu Nguyen, Scott T. Bates
Software Mentions: 2
Published: about 11 years ago

10.3390/v12090948

Identification and Prevalence of Phascolarctid Gammaherpesvirus Types 1 and 2 in South Australian Koala Populations
Cited by: 2
Author(s): Vasilli Kasimov, Tamsyn Stephenson, Natasha Speight, Anne‐Lise Chaber, Wayne Boardman, Ruby Easther, Farhid Hemmatzadeh
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0191992

Potential disruption of seed dispersal in the absence of a native Kauai thrush
Cited by: 5
Author(s): Monica Kaushik, Liba Pejchar, Lisa H. Crampton
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0220522

Humoral immune responses against gut bacteria in dogs with inflammatory bowel disease
Cited by: 16
Author(s): Sirikul Soontararak, Lyndah Chow, Valerie Johnson, Jonathan Coy, Craig B. Webb, Sara Wennogle, Steven Dow
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0233065

Single-cell amplicon sequencing reveals community structures and transmission trends of protist-associated bacteria in a termite host
Cited by: 6
Author(s): M. A. Stephens, Daniel J. Gage
Software Mentions: 2
Published: about 6 years ago

10.1136/bmjopen-2020-042945

Hospital bed capacity and usage across secondary healthcare providers in England during the first wave of the COVID-19 pandemic: a descriptive analysis
Cited by: 22
Author(s): Bilal A. Mateen, Harrison Wilde, John Dennis, Andrew J. Duncan, Nick Thomas, Andrew McGovern, Spiros Denaxas, Matthew James Keeling, Sebastian J. Vollmer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0170655

SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.)
Cited by: 40
Author(s): Annarita Marrano, Giovanni Birolo, M.L. Prazzoli, Silvia Lorenzi, Giorgio Valle, S. Grando
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0169990

Up, Down, Near, Far: An Online Vestibular Contribution to Distance Judgement
Cited by: 8
Author(s): Ágoston Török, Elisa Raffaella Ferrè, Elena Kokkinara, Valéria Csépe, David Swapp, Patrick Haggard
Software Mentions: 2
Published: over 9 years ago

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