cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12863-016-0464-4

Haploid yeast cells undergo a reversible phenotypic switch associated with chromosome II copy number
Cited by: 9
Author(s): Polina Drozdova, Л. Н. Миронова, Galina A. Zhouravleva
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12863-020-00858-y

Transcriptomic comparison of communally reared wild, domesticated and hybrid Atlantic salmon fry under stress and control conditions
Cited by: 4
Author(s): Beatrix Bicskei, John B. Taggart, James E. Bron, Kevin A. Glover
Software Mentions: 2
Published: over 6 years ago

10.1186/s12863-020-00839-1

Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans
Cited by: 5
Author(s): María Cortázar-Chinarro, Yvonne Meyer‐Lucht, Tom van der Valk, Àlex Richter‐Boix, Anssi Laurila, Jacob Höglund
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.01889

Cross-Species Transmission and Evolution of SIV Chimpanzee Progenitor Viruses Toward HIV-1 in Humanized Mice
Cited by: 7
Author(s): Kimberly Schmitt, James Curlin, Leila Remling‐Mulder, Ryan V. Moriarty, Kelly Goff, Shelby L. O’Connor, Mark D. Stenglein, Preston A. Marx, Ramesh Akkina
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103560

Circular RNA hsa_circ_0076690 acts as a prognostic biomarker in osteoporosis and regulates osteogenic differentiation of hBMSCs via sponging miR-152
Cited by: 17
Author(s): Shujuan Han, Ming-jie Kuang, Chao Sun, Haifeng Wang, Dachuan Wang, Qian Liu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12863-017-0557-8

Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites
Cited by: 28
Author(s): C. A. Anderson, Luís Cunha, Pierfrancesco Sechi, Peter Kille, David J. Spurgeon
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2020.577268

Infection of Ophiocordyceps sinensis Fungus Causes Dramatic Changes in the Microbiota of Its Thitarodes Host
Cited by: 14
Author(s): Hua Wu, Zhongchen Rao, Li Cao, Patrick De Clercq, Richou Han
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.202914

Expression profile, molecular functions, and prognostic significance of miRNAs in primary colorectal cancer stem cells
Cited by: 3
Author(s): Cheng Fan, Ran Lu, Chao Fang, Xueli Zhang, Zhaoying Lv, Yuan Li, Hong Zhang, Zong‐Guang Zhou, Xianming Mo, Xiao‐Feng Sun
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01890

Comparative Microbiomics of Tephritid Frugivorous Pests (Diptera: Tephritidae) From the Field: A Tale of High Variability Across and Within Species
Cited by: 20
Author(s): Maarten De Cock, M. Virgilio, Peter Vandamme, Kostas Bourtzis, M. De Meyer, Anne Willems
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2016.01812

Rapid Fermentable Substance Modulates Interactions between Ruminal Commensals and Toll-Like Receptors in Promotion of Immune Tolerance of Goat Rumen
Cited by: 21
Author(s): Hong Shen, Zhongyan Lu, Zhan Chen, Yufeng Wu, Zongzhuan Shen
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2021.725612

The Binary Toxin of Clostridioides difficile Alters the Proteome and Phosphoproteome of HEp-2 Cells
Cited by: 8
Author(s): Florian Stieglitz, Ralf Gerhard, Andreas Pich
Software Mentions: 2
Published: about 5 years ago

10.1186/s12876-021-01716-6

The incidence and prevalence of inflammatory bowel disease in UK primary care: a retrospective cohort study of the IQVIA Medical Research Database
Cited by: 31
Author(s): Karoline Freeman, Ronan Ryan, Nicholas R. Parsons, Sian Taylor‐Phillips, Brian H Willis, Aileen Clarke
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00949

Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond
Cited by: 53
Author(s): Zarraz M.-P. Lee, Amisha T. Poret-Peterson, Janet L. Siefert, Drishti Kaul, Ahmed Moustafa, Andrew E. Allen, Chris L. Dupont, Luis E. Eguiarte, Valeria Souza, James J. Elser
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.02952

Trophic Selective Pressures Organize the Composition of Endolithic Microbial Communities From Global Deserts
Cited by: 24
Author(s): Evan B Qu, Christopher R. Omelon, Aharon Oren, Victoria Meslier, Don A. Cowan, Gillian Maggs‐Kölling, Jocelyne DiRuggiero
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2019.01018

Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods
Cited by: 43
Author(s): Adriana Rego, Francisco Raio, Teresa P. Martins, Hugo Leonardo Coelho Ribeiro, António G G Sousa, Joana Séneca, Mafalda S. Baptista, Charles K. Lee, S. Craig Cary, Vítor Ramos, Maria de Fátima Carvalho, Pedro N. Leão, Catarina Magalhães
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-230X-13-131

Association of gut microbiota with post-operative clinical course in Crohn’s disease
Cited by: 88
Author(s): Neelendu Dey, David Soergel, Susanna Repo, Steven E. Brenner
Software Mentions: 2
Published: about 13 years ago

10.3389/fmicb.2021.707786

Effects of Heavy Metals/Metalloids and Soil Properties on Microbial Communities in Farmland in the Vicinity of a Metals Smelter
Cited by: 37
Author(s): Xiao-Min Hu, Jianlei Wang, Ying Liu, Xingyu Liu, Juan Zhong, Xinglan Cui, Mingjiang Zhang, Ding Ma, Yan Xiao, Xuezhe Zhu
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.01582

3-NOP vs. Halogenated Compound: Methane Production, Ruminal Fermentation and Microbial Community Response in Forage Fed Cattle
Cited by: 55
Author(s): Gonzalo Martínez Fernández, S. Duval, Maik Kindermann, Horst Joachim Schirra, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.00032

Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency
Cited by: 43
Author(s): Jianping Quan, Zhenfang Wu, Yong Ye, Longlong Peng, Jie Wu, Donglin Ruan, Yibin Qiu, Rongrong Ding, Xingwang Wang, Enqin Zheng, Guangyan Cai, Wen Huang, Jie Yang
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12875-019-1045-1

Clinic and patient variation in intermediate clinical outcomes for type 2 diabetes: a multilevel analysis
Cited by: 1
Author(s): Yvonne Mei Fong Lim, Swee Hung Ang, Nazrila Hairizan Nasir, Fatanah Ismail, Siti Mazlipah Ismail, Sheamini Sivasampu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12862-020-01705-5

The evolution of the huntingtin-associated protein 40 (HAP40) in conjunction with huntingtin
Cited by: 10
Author(s): Manuel Seefelder, Vikram Alva, Bin Huang, Tatjana Engler, Wolfgang Baumeister, Qiang Guo, Rubén Fernández-Busnadiego, Andrei N. Lupas, Stefan Kochanek
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12862-020-01727-z

You don’t have the guts: a diverse set of fungi survive passage through Macrotermes bellicosus termite guts
Cited by: 6
Author(s): Nick Bos, Leandro Guimarães, Romen Palenzuela, Justinn Renelies‐Hamilton, Lorrie Maccario, Simon Kolotchèlèma Silué, N’golo Abdoulaye Koné, Michael Poulsen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.02613

Different Selectivity in Fungal Communities Between Manure and Mineral Fertilizers: A Study in an Alkaline Soil After 30 Years Fertilization
Cited by: 20
Author(s): Ying Wang, Hongfei Ji, Yaxian Hu, Rui Wang, Junpeng Rui, Shengli Guo
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12862-017-0911-5

Genetic basis of allochronic differentiation in the fall armyworm
Cited by: 36
Author(s): Sabine Hänniger, Pascaline Dumas, Gerhard Schöfl, Steffi Gebauer-Jung, Heiko Vogel, Melanie Unbehend, David G. Heckel, Astrid T. Groot
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.00273

Lactobacillus gasseri APC 678 Reduces Shedding of the Pathogen Clostridium difficile in a Murine Model
Cited by: 9
Author(s): Lisa Quigley, M. Coakley, Debebe Alemayehu, Mary C. Rea, Patrick G. Casey, Órla O’Sullivan, Eileen F. Murphy, Barry Kiely, Paul D. Cotter, Colin Hill, R. Paul Ross
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-99192-1

Characterizing the genomic variation and population dynamics of Plasmodium falciparum malaria parasites in and around Lake Victoria, Kenya
Cited by: 10
Author(s): Ashley Osborne, Emilia Mańko, Mika Takeda, Akira Kaneko, Wataru Kagaya, Chim W. Chan, Mtakai Ngara, James Kongere, Kiyoshi Kita, Susana Campino, O. Kaneko, Jesse Gitaka, Taane G. Clark
Software Mentions: 2
Published: about 5 years ago

10.1186/s12862-018-1306-y

The evolution of ependymin-related proteins
Cited by: 15
Author(s): Carmel McDougall, Michael Hammond, Simon Christopher Dailey, Ildikó Maureen Lara Somorjai, Scott F. Cummins, Bernard M. Degnan
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.00079

Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle
Cited by: 32
Author(s): Trestan Pillonel, Claire Bertelli, Gilbert Greub
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-99445-z

Intention-based and sensory-based predictions
Cited by: 7
Author(s): Álvaro Darriba, Yi Fang Hsu, Sandrien van Ommen, Florian Waszak
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.01260

Molecular Diagnosis of Brettanomyces bruxellensis’ Sulfur Dioxide Sensitivity Through Genotype Specific Method
Cited by: 38
Author(s): Marta Avramova, Amélie Vallet-Courbin, Julie Maupeu, Isabelle Masneuf‐Pomarède, Warren Albertin
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.738734

Penicillium simplicissimum NL-Z1 Induced an Imposed Effect to Promote the Leguminous Plant Growth
Cited by: 3
Author(s): Jiayao Zhuang, Chao Liu, Xiaoxue Wang, Tongxin Xu, Hao Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2013.00342

Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments
Cited by: 44
Author(s): Jennifer L. Bowen, Jarrett E. K. Byrnes, David Weisman, Cory Colaneri
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12898-017-0120-5

Alternative reproductive tactics and inverse size-assortment in a high-density fish spawning aggregation
Cited by: 5
Author(s): Rucha Karkarey, Amod Zambre, Kavita Isvaran, Rohan Arthur
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-98976-9

Coral micro- and macro-morphological skeletal properties in response to life-long acclimatization at CO2 vents in Papua New Guinea
Cited by: 6
Author(s): Fiorella Prada, Leonardo Brizi, Silvia Franzellitti, Stefano Mengoli, Simona Fermani, Iryna Polishchuk, Nicola Baraldi, Francesco Ricci, Quinzia Palazzo, Erik Caroselli, Boaz Pokroy, Loris Giorgini, Zvy Dubinsky, Paola Fantazzini, Giuseppe Falini, Stefano Goffredo, Katharina Fabricius
Software Mentions: 2
Published: about 5 years ago

10.1186/s12861-019-0205-9

Comparison of the transcriptomes of two tardigrades with different hatching coordination
Cited by: 9
Author(s): Yuki Yoshida, Kenta Sugiura, Masaru Tomita, Midori Matsumoto, Kazuharu Arakawa
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.667944

Metagenomic Insights Into the Microbial Iron Cycle of Subseafloor Habitats
Cited by: 3
Author(s): Arkadiy I. Garber, Ashley B. Cohen, Kenneth H. Nealson, Gustavo A. Ramírez, Roman A. Barco, Tristan C. Enzingmüller‐Bleyl, Michelle M. Gehringer, Nancy Merino
Software Mentions: 2
Published: about 5 years ago

10.1186/s12872-021-02126-y

C-factor: a summary measure for systemic arterial calcifications
Cited by: 0
Author(s): Lieke M. Kuiper, Mohammad Kamran Ikram, Maryam Kavousi, Meike W. Vernooij, M. Arfan Ikram, Daniël Bos
Software Mentions: 2
Published: over 5 years ago

10.1186/s12872-021-02040-3

Significances of viable synergistic autophagy-associated cathepsin B and cathepsin D (CTSB/CTSD) as potential biomarkers for sudden cardiac death
Cited by: 11
Author(s): Jialin Dai, Qiong Zhang, Changwu Wan, Jiangjin Liu, Qiaojun Zhang, Yu Yu, Jie Wang
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.103362

Serum metabolites associate with physical performance among middle-aged adults: Evidence from the Bogalusa Heart Study
Cited by: 10
Author(s): Jovia L. Nierenberg, Jiang He, Changwei Li, Xiaoqing Gu, Mengyao Shi, Alexander C. Razavi, Xuenan Mi, Shengxu Li, Lydia A. Bazzano, Amanda H. Anderson, Hua He, Wei Chen, Jack M. Guralnik, Jason M. Kinchen, Tanika N. Kelly
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02421

Characteristics of Microbial Communities and Their Correlation With Environmental Substrates and Sediment Type in the Gas-Bearing Formation of Hangzhou Bay, China
Cited by: 3
Author(s): Tao Yu, Meng Zhang, Da Kang, Shuang Zhao, Aqiang Ding, Qiujian Lin, Dongdong Xu, Yi Hong, Lizhong Wang, Ping Zheng
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2015.00223

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities
Cited by: 56
Author(s): Markus V. Lindh, Daniela Figueroa, Johanna Sjöstedt, Federico Baltar, Daniel Lundin, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: over 11 years ago

10.1186/s12885-021-08163-2

Bioinformatics and survival analysis of glia maturation factor-γ in pan-cancers
Cited by: 8
Author(s): Aihua Lan, Chun‐Xia Ren, Xiaoling Wang, Guoqing Tong, Gong Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-017-3815-2

Intra-tumor heterogeneity in breast cancer has limited impact on transcriptomic-based molecular profiling
Cited by: 9
Author(s): Govindasamy-Muralidharan Karthik, Mattias Rantalainen, Gustav Stålhammar, John Lövrot, Ikram Ullah, Amjad Alkodsi, Ran Ma, Lena Wedlund, Johan Lindberg, Jan Frisell, Jonas Bergh, Johan Hartman
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12885-019-6084-4

Immunohistochemical validation of COL3A1, GPR158 and PITHD1 as prognostic biomarkers in early-stage ovarian carcinomas
Cited by: 34
Author(s): Hanna Engqvist, Toshima Z. Parris, Anikó Kovács, Szilárd Nemes, Elisabeth Werner Rönnerman, Shahin De Lara, Jana Biermann, Karin Sundfeldt, Per Karlsson, Khalil Helou
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-020-6713-y

Ubiquitin-specific protease-44 inhibits the proliferation and migration of cells via inhibition of JNK pathway in clear cell renal cell carcinoma
Cited by: 14
Author(s): Jiangqiao Zhou, Tianyu Wang, Tao Qiu, Zhongbao Chen, Xiaofen Ma, Long Zhang, Jilin Zou
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.608086

Size Matters: Biological and Food Safety Relevance of Leaf Damage for Colonization of Escherichia coli O157:H7 gfp+
Cited by: 1
Author(s): Emina Mulaosmanovic, Sofia Windstam, Ivar Vågsholm, Beatrix Alsanius
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.554051

Fungal Composition and Diversity of the Tobacco Leaf Phyllosphere During Curing of Leaves
Cited by: 28
Author(s): Qianli Chen, Lin Cai, Han-Cheng Wang, Lun Cai, Paul H. Goodwin, Ma Jun, Feng Wang, Li Zhong
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-018-4894-4

Untargeted lipidomic features associated with colorectal cancer in a prospective cohort
Cited by: 20
Author(s): Kelsi Perttula, Courtney Schiffman, William M. B. Edmands, Lauren Petrick, Hasmik Grigoryan, Xiaoming Cai, Marc J. Gunter, Alessio Naccarati, Silvia Polidoro, Sandrine Dudoit, Paolo Víneis, Stephen M. Rappaport
Software Mentions: 2
Published: about 8 years ago

10.1186/s12885-020-6643-8

MicroRNAs associated to single drug components of R-CHOP identifies diffuse large B-cell lymphoma patients with poor outcome and adds prognostic value to the international prognostic index
Cited by: 9
Author(s): Hanne Due, Rasmus Froberg Brøndum, Ken H. Young, Martin Bøgsted, Karen Dybkær
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.00224

Transglycosylated Starch Modulates the Gut Microbiome and Expression of Genes Related to Lipid Synthesis in Liver and Adipose Tissue of Pigs
Cited by: 28
Author(s): Monica A. Newman, Renée M. Petri, Dietmar Grüll, Qendrim Zebeli, Barbara U. Metzler‐Zebeli
Software Mentions: 2
Published: over 8 years ago

10.1002/advs.202003164

Temporarily Epigenetic Repression in Bergmann Glia Regulates the Migration of Granule Cells
Cited by: 2
Author(s): Shaoxuan Chen, Kunkun Zhang, Boxin Zhang, Mengyun Jiang, Xue Zhang, Yi Guo, Yingying Yu, Tianyu Qin, Hongda Li, Qiang Chen, Zhiyu Cai, Site Luo, Yi Huang, Haixia Jin, Wei Mo
Software Mentions: 2
Published: over 5 years ago

10.1007/s00122-019-03425-x

Association genetics of bunch weight and its component traits in East African highland banana (Musa spp. AAA group)
Cited by: 13
Author(s): Moses Nyine, Brigitte Uwimana, Violet Akech, Allan Brown, Rodomiro Ortíz, Jaroslav Doležel, J. Lorenzen, Rony Swennen
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-021-07874-w

Expression of BAG1 is associated with prognosis in kidney renal clear cell carcinoma based on bioinformatics
Cited by: 2
Author(s): Hongrong Wu, Minjing Liu, Yue‐Jun He, Guozhao Meng, Wan-bei Guo, Qian Guo
Software Mentions: 2
Published: over 5 years ago

10.1186/s13287-020-1580-7

Exosomal microRNA-144 from bone marrow-derived mesenchymal stem cells inhibits the progression of non-small cell lung cancer by targeting CCNE1 and CCNE2
Cited by: 41
Author(s): Yuan Liu, Dalin Zhang, Linlin Li, Xin Tian, Yuwei Zhao, Rui Ma, Jie Du
Software Mentions: 2
Published: over 6 years ago

10.1186/s12896-017-0379-9

Overview of methodologies for T-cell receptor repertoire analysis
Cited by: 220
Author(s): Elisa Rosati, C. Marie Dowds, Evaggelia Liaskou, Eva Henriksen, Tom H. Karlsen, André Franke
Software Mentions: 2
Published: over 9 years ago

10.1186/s12915-019-0684-y

MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens
Cited by: 50
Author(s): Guru V. Radhakrishnan, Nicola Cook, Vanessa Bueno-Sancho, Clare M. Lewis, Antoine Persoons, Abel Debebe Mitiku, Matthew M. Heaton, Phoebe E. Davey, Bekele Abeyo, Yoseph Alemayehu, Ayele Badebo, M. D. Barnett, Ruth Bryant, Jeron Chatelain, Xianming Chen, Suomeng Dong, Tina Henriksson, Sarah Holdgate, Annemarie Fejer Justesen, Jay Kalous, Zhensheng Kang, Szymon Laczny, Jean-Paul Legoff, Driecus Lesch, Tracy L. Richards, H. S. Randhawa, Tine Thach, Meinan Wang, Mogens S. Hovmøller, David Hodson, Diane G. O. Saunders
Software Mentions: 2
Published: about 7 years ago

10.1002/advs.201902295

Developmentally Engineered Callus Organoid Bioassemblies Exhibit Predictive In Vivo Long Bone Healing
Cited by: 86
Author(s): Gabriella Nilsson Hall, Luís Mendes, Charikleia Gklava, Liesbet Geris, Frank P. Luyten, Ioannis Papantoniou
Software Mentions: 2
Published: almost 7 years ago

10.1155/2019/1252653

Current Status of Pearl Millet Downy Mildew Prevalence across Agroecological Zones of Senegal
Cited by: 1
Author(s): Yedomon Ange Bovys Zoclanclounon, Ghislain Kanfany, Aboubacry Kane, Daniel Foncéka, Georgina Lala Ehemba, Fatmata Ly
Software Mentions: 2
Published: over 7 years ago

10.1186/s12915-021-01106-0

Stop codon readthrough alters the activity of a POU/Oct transcription factor during Drosophila development
Cited by: 4
Author(s): Yaofeng Zhao, Bo G. Lindberg, Shiva Seyedoleslami Esfahani, Xiongzhuo Tang, Stefano Piazza, Ylva Engström
Software Mentions: 2
Published: about 5 years ago

10.3390/s19102388

Data Stream Mining Applied to Maximum Wind Forecasting in the Canary Islands
Cited by: 7
Author(s): Javier J. Sánchez-Medina, Juan Guerra-Montenegro, David Sánchez-Rodríguez, Itziar Alonso-González, Juan L. Navarro-Mesa
Software Mentions: 2
Published: over 7 years ago

10.1186/s12915-020-00892-3

Mapping the past, present and future research landscape of paternal effects
Cited by: 17
Author(s): Joanna Rutkowska, Malgorzata Lagisz, Russell Bonduriansky, Shinichi Nakagawa
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2014.00678

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes
Cited by: 220
Author(s): Austin G. Davis-Richardson, Alexandria N. Ardissone, Raquel Dias, Ville Simell, Michael T. Leonard, Kaisa Kemppainen, Jennifer C. Drew, Desmond Schatz, Mark A. Atkinson, Bryan Kolaczkowski, Jorma Ilonen, Mikael Knip, Jorma Toppari, Noora Nurminen, Heikki Hyöty, Riitta Veijola, Tuula Simell, Juha Mykkänen, Olli Simell, Eric W. Triplett
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2017.00490

Population Structure of Sclerotinia subarctica and Sclerotinia sclerotiorum in England, Scotland and Norway
Cited by: 26
Author(s): John P. Clarkson, Rachel Warmington, Paul Walley, Matthew Denton‐Giles, Martin J. Barbetti, Guro Brodal, Berit Nordskog
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.619632

Microbial Communities in Flexible Biomethanation of Hydrogen Are Functionally Resilient Upon Starvation
Cited by: 12
Author(s): Washington Logroño, Denny Popp, Marcell Nikolausz, Paul Kluge, Hauke Harms, Sabine Kleinsteuber
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-020-00838-9

The role of vegetative cell fusions in the development and asexual reproduction of the wheat fungal pathogen Zymoseptoria tritici
Cited by: 9
Author(s): C. L. Francisco, Maria Manuela Zwyssig, Javier Palma‐Guerrero
Software Mentions: 2
Published: about 6 years ago

10.1186/s13287-020-01641-7

Chemical-defined medium supporting the expansion of human mesenchymal stem cells
Cited by: 12
Author(s): Jianyong Xu, Wei Lian, Jieting Chen, Wenlei Li, Lingyun Li, Zhong Huang
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.03008

Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields
Cited by: 12
Author(s): Jan Vander Roost, Frida Lise Daae, Ida Helene Steen, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.03152

Fungal Community as a Bioindicator to Reflect Anthropogenic Activities in a River Ecosystem
Cited by: 28
Author(s): Yaohui Bai, Qiaojuan Wang, Kailingli Liao, Zhiyu Jian, Chen Zhao, Jiuhui Qu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13643-020-01376-9

Locating unregistered and unreported data for use in a social science systematic review and meta-analysis
Cited by: 7
Author(s): Joshua R. Polanin, Dorothy L. Espelage, Jennifer K. Grotpeter, Alberto Valido, Katherine M. Ingram, Cagil Torgal, America El Sheikh, Luz E. Robinson
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.649969

BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements
Cited by: 29
Author(s): Xiaoting Hua, Qian Liang, Min Deng, Jintao He, Meixia Wang, Wenjie Hong, Jun Wu, Boxun Lu, Sebastian Leptihn, Yunsong Yu, Huan Chen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.667790

Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit
Cited by: 8
Author(s): Chloe Myers, Charlotte J. Houldcroft, Sunando Roy, Ben Margetts, Timothy Best, Cristina Venturini, José Afonso Guerra-Assunção, Charlotte A. Williams, Rachel Williams, Helen Dunn, John C. Hartley, Kanchan Rao, Kathryn J. Rolfe, Judith Breuer
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-021-01070-9

An engineered genetic circuit for lactose intolerance alleviation
Cited by: 2
Author(s): Mingyue Cheng, Zhangyu Cheng, Yiyan Yu, Wangjie Liu, Ruihao Li, Zhenyi Guo, Jiyue Qin, Zhi Zeng, Dong Lin, Yufeng Mo, Chunxiu Pan, Yuanhao Liang, Jinman Li, Yigang Tong, Yunjun Yan, Yi Zhan, Kang Ning
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.02078

Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea
Cited by: 23
Author(s): Markus V. Lindh, Johanna Sjöstedt, Michèle Casini, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13287-021-02244-6

Exosomes from human umbilical cord mesenchymal stem cells attenuate the inflammation of severe steroid-resistant asthma by reshaping macrophage polarization
Cited by: 36
Author(s): Bing Dong, Chao Wang, Jing Zhang, Jinrong Zhang, Yinuo Gu, Xiaoping Guo, Xu Zuo, Pan He, Alan Hsu, Guoqiang Wang, Fang Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.683234

Effects of Different Treatment of Fecal Microbiota Transplantation Techniques on Treatment of Ulcerative Colitis in Rats
Cited by: 7
Author(s): Fengshuo Zhu, Yifan Ke, Yiting Luo, Jiaqian Wu, Pei Chen Wu, Fuyin Ma, Yingchao Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-019-0686-9

Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces
Cited by: 6
Author(s): Nicola B. Davidson, Natalie I Koch, Joscelyn Sarsby, Emrys A. Jones, Jane L. Hurst, Robert J. Beynon
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.00716

Compositional and Quantitative Insights Into Bacterial and Archaeal Communities of South Pacific Deep-Sea Sponges (Demospongiae and Hexactinellida)
Cited by: 35
Author(s): Georg Steinert, Kathrin Busch, Kristina Bayer, Sahar Kodami, Pedro Martínez Arbizu, Michelle Kelly, Sadie Mills, Dirk Erpenbeck, Martin Dohrmann, Gert Wörheide, Ute Hentschel, Peter J. Schupp
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-016-0917-9

Web-TCGA: an online platform for integrated analysis of molecular cancer data sets
Cited by: 135
Author(s): Mario C. Deng, Johannes Brägelmann, Joachim L. Schultze, Sven Perner
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2021.672656

The Abundance of the nifH Gene Became Higher and the nifH-Containing Diazotrophic Bacterial Communities Changed During Primary Succession in the Hailuogou Glacier Chronosequence, China
Cited by: 3
Author(s): Yingyan Wang, Yulan Chen, Qinyu Xue, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhang, Petri Penttinen, Yunfu Gu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00045

Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes (mpeBA and cpeBA)
Cited by: 45
Author(s): Patricia Sánchez‐Baracaldo, Giorgio Bianchini, Andrea Di Cesare, Cristiana Callieri, Nathan Chrismas
Software Mentions: 2
Published: over 7 years ago

10.1208/s12248-019-0319-9

A Novel Method for Analysing Frequent Observations from Questionnaires in Order to Model Patient-Reported Outcomes: Application to EXACT® Daily Diary Data from COPD Patients
Cited by: 2
Author(s): Eva Germovsek, Claire Ambery, Shuying Yang, Misba Beerahee, Mats O. Karlsson, Elodie L. Plan
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-016-1240-1

solveME: fast and reliable solution of nonlinear ME models
Cited by: 41
Author(s): Laurence T. Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard Ø. Palsson
Software Mentions: 2
Published: about 10 years ago

10.1186/s12859-021-04238-w

Performance of Web tools for predicting changes in protein stability caused by mutations
Cited by: 21
Author(s): Anna Marabotti, Eugenio Del Prete, Bernardina Scafuri, Angelo Facchiano
Software Mentions: 2
Published: over 5 years ago

10.1186/s40478-018-0553-x

Non-inflammatory tumor microenvironment of diffuse intrinsic pontine glioma
Cited by: 104
Author(s): Grant L. Lin, Surya Nagaraja, Mariella G. Filbin, Mario L. Suvà, Hannes Vogel, Michelle Monje
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-019-2622-y

Genome-wide tracts of homozygosity and exome analyses reveal repetitive elements with Barrets esophagus/esophageal adenocarcinoma risk
Cited by: 3
Author(s): Visanu Wanchai, Jing Jin, Emine Bircan, Charis Eng, Mohammed S. Orloff
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-018-2373-1

Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCε
Cited by: 4
Author(s): Ari Hardianto, Varun Khanna, Fei Liu, Shoba Ranganathan
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-014-0372-4

A fixed-point algorithm for estimating amplification efficiency from a polymerase chain reaction dilution series
Cited by: 9
Author(s): Michael E. Jones, George C. Mayne, Tingting Wang, David I. Watson, Damian J. Hussey
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12859-021-04345-8

The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma
Cited by: 4
Author(s): Xiaoxiao Zhao, Jianghuai Ji, Wang Shi-jia, Rendong Wang, Qiuhong Yu, Dongguo Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.542623

Effect of the AM Fungus Sieverdingia tortuosa on Common Vetch Responses to an Anthracnose Pathogen
Cited by: 2
Author(s): Tingting Ding, Weizhen Zhang, Yingde Li, Taizhong Duan
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-019-3173-y

EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data
Cited by: 15
Author(s): Chandler D. Gatenbee, Ryan O. Schenck, Rafael Bravo, Alexander R.A. Anderson
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-15-15

OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer
Cited by: 16
Author(s): Rimpi Khurana, Vinod Kumar Verma, Abdul Rawoof, Shrish Tiwari, Rekha A. Nair, Ganesh Mahidhara, Mohammed M. Idris, Alan R. Clarke, Lekha Dinesh Kumar
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12859-020-03589-0

imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters
Cited by: 9
Author(s): Gennady V. Khvorykh, Andrey Khrunin
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-015-0625-x

Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm
Cited by: 17
Author(s): Theodore Gibbons, Stephen M. Mount, Endymion D. Cooper, Charles F. Delwiche
Software Mentions: 2
Published: over 11 years ago

10.1186/s12871-018-0646-x

Prediction of postoperative mortality in elderly patient with hip fractures: a single-centre, retrospective cohort study
Cited by: 18
Author(s): Romain Niessen, Benoît Bihin, Maximilien Gourdin, Jean Cyr Yombi, Olivier Cornu, Patrice Forget
Software Mentions: 2
Published: almost 8 years ago

10.1259/bjrcr.20190122

Advanced multimodality MR imaging of a cerebral nocardiosis abscess in an immunocompetent patient with a focus on Amide Proton Transfer weighted imaging
Cited by: 3
Author(s): Elisabeth Sartoretti, Thomas Sartoretti, Annina Gutzwiller, Urs Karrer, Christoph A. Binkert, Arash Najafi, David Czell, Simon Beyeler, Sabine Sartoretti‐Schefer
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02260

Fecal Microbiome Characteristics and the Resistome Associated With Acquisition of Multidrug-Resistant Organisms Among Elderly Subjects
Cited by: 10
Author(s): Rafael Araos, Thomas Battaglia, Juan A. Ugalde, Marcelo Rojas-Herrera, Martin J. Blaser, Erika M. C. D’Agata
Software Mentions: 2
Published: about 7 years ago

10.1155/2018/9856910

Relationships among Antibodies against Extractable Nuclear Antigens, Antinuclear Antibodies, and Autoimmune Diseases in a Brazilian Public Hospital
Cited by: 12
Author(s): Fernanda Weyand Banhuk, Bruna Corrêa Pahim, Alex Sandro Jorge, Rafael Andrade Menolli
Software Mentions: 2
Published: about 8 years ago

10.1002/aur.1886

Auditory brainstem response in infants and children with autism spectrum disorder: A meta-analysis of wave V
Cited by: 34
Author(s): Oren Miron, Andrew L. Beam, Isaac S. Kohane
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.01255

In Silico Genome-Wide Analysis Reveals the Potential Links Between Core Genome of Acidithiobacillus thiooxidans and Its Autotrophic Lifestyle
Cited by: 17
Author(s): Xian Zhang, Zhenghua Liu, Guanyun Wei, Fei Yang, Xueduan Liu
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.02845

Transcriptional Changes on Blight Fruiting Body of Flammulina velutipes Caused by Two New Bacterial Pathogens
Cited by: 8
Author(s): Qing Wang, Mengpei Guo, Ruiping Xu, Jingcheng Zhang, Yinbing Bian, Yang Xiao
Software Mentions: 2
Published: almost 7 years ago

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Papers Mentioning ggplot2 11,441