cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40168-018-0453-0

A comparison of methods used to unveil the genetic and metabolic pool in the built environment
Cited by: 18
Author(s): C. Gómez-Silván, Marcus H. Y. Leung, Katherine Grue, Randeep Kaur, Xinzhao Tong, Patrick K. H. Lee, Gary L. Andersen
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-019-0755-x

Microbiota analysis optimization for human bronchoalveolar lavage fluid
Cited by: 25
Author(s): Pierre H. H. Schneeberger, Janice Prescod, Liran Levy, David Hwang, T. Martinu, Bryan Coburn
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-017-0265-7

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
Cited by: 51
Author(s): Alya Heirali, Matthew L. Workentine, Nicole Acosta, Ali Poonja, Douglas G. Storey, Ranjani Somayaji, Harvey Rabin, Fiona Whelan, Michael G. Surette, Michael D. Parkins
Software Mentions: 2
Published: over 9 years ago

10.1128/MRA.00479-20

Nearly Complete Genome Sequence of Brugia pahangi FR3
Cited by: 4
Author(s): John Mattick, Silvia Libro, Benjamin C. Sparklin, Matthew Chung, Robin E. Bromley, Suvarna Nadendla, Xüna Zhao, Sandra Ott, Lisa Sadzewicz, Luke J. Tallon, Michelle L. Michalski, Jeremy M. Foster, Julie C. Dunning Hotopp
Software Mentions: 2
Published: about 6 years ago

10.1128/MRA.00273-21

Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data
Cited by: 1
Author(s): Emma L. Keeler, Louis J. Taylor, Arwa Abbas, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 2
Published: over 5 years ago

10.1002/mbo3.726

Characterization of the bacterial community composition in water of drinking water production and distribution systems in Flanders, Belgium
Cited by: 15
Author(s): Ado Van Assche, Sam Crauwels, Jos De Brabanter, Kris Willems, Bart Lievens
Software Mentions: 2
Published: almost 8 years ago

10.1002/mbo3.436

Maintaining stability of the rumen ecosystem is associated with changes of microbial composition and epithelial TLR signaling
Cited by: 13
Author(s): Hong Shen, Zhan Chen, Zongzhuan Shen, Zhongyan Lu
Software Mentions: 2
Published: over 9 years ago

10.1093/gbe/evu263

Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: over 11 years ago

10.1002/mbo3.456

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors
Cited by: 28
Author(s): Shelesh Agrawal, Søren Michael Karst, Eva M. Gilbert, Harald Horn, Per Halkjær Nielsen, Susanne Lackner
Software Mentions: 2
Published: over 9 years ago

10.1002/mbo3.768

Pressure and temperature effects on deep-sea hydrocarbon-degrading microbial communities in subarctic sediments
Cited by: 17
Author(s): Luis J Perez Calderon, Evangelia Gontikaki, Lloyd D. Potts, Sophie Shaw, Alejandro Gallego, James A. Anderson, Ursula Witte
Software Mentions: 2
Published: almost 8 years ago

10.1093/gbe/evab098

Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation
Cited by: 16
Author(s): Anna Tigano, Arne Jacobs, Aryn P. Wilder, Ankita Nand, Zhan Ye, Job Dekker, Nina Overgaard Therkildsen
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-015-0192-9

ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients
Cited by: 2
Author(s): Vinay Varadan, Salendra Singh, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Jill S. Barnholtz‐Sloan, Sanford D. Markowitz, Joseph E. Willis, Kishore Guda
Software Mentions: 2
Published: about 11 years ago

10.1172/jci.insight.139032

Pathogenic, glycolytic PD-1+ B cells accumulate in the hypoxic RA joint
Cited by: 36
Author(s): Achilleas Floudas, Nuno Neto, Viviana Marzaioli, Kieran Murray, Barry Moran, Michael G. Monaghan, Candice Low, Ronan Mullan, Navin Rao, Vinod Krishna, Sunil Nagpal, Douglas J. Veale, Ursula Fearon
Software Mentions: 2
Published: almost 6 years ago

10.1099/mgen.0.000594

gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae
Cited by: 2
Author(s): Thea G. Fennell, Grace A. Blackwell, Nicholas R. Thomson, Matthew J. Dorman
Software Mentions: 2
Published: about 5 years ago

10.1172/jci.insight.146707

Hedgehog-induced PD-L1 on tumor-associated macrophages is critical for suppression of tumor-infiltrating CD8+ T cell function
Cited by: 42
Author(s): Amy J. Petty, Rui Dai, Rosa Lapalombella, Robert A. Baiocchi, Don M. Benson, Zihai Li, Xin Huang, Yiping Yang
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000315

Next-generation sequencing of dsRNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO
Cited by: 7
Author(s): Alexander H. Wilcox, Eric Delwart, Samuel L. Díaz‐Muñoz
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.149217

A map of metabolic phenotypes in patients with myalgic encephalomyelitis/chronic fatigue syndrome
Cited by: 15
Author(s): Fredrik Hoel, August Hoel, Ina Katrine Nitschke Pettersen, Ingrid Gurvin Rekeland, Kristin Risa, Kine Alme, Kari Sørland, Alexander Fosså, Katarina Lien, Ingrid Herder, Hanne Thürmer, Merethe Otelie Eide Gotaas, Christoph Schäfer, Rolf K. Berge, Kristian Sommerfelt, Hans-Peter Marti, Olav Dahl, Olav Mella, Øystein Fluge, Karl Johan Tronstad
Software Mentions: 2
Published: almost 5 years ago

10.1264/jsme2.ME18108

Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome
Cited by: 6
Author(s): Takashi Narihiro, Masaru K. Nobu, Tomoyuki Hori, Tomo Aoyagi, Yuya Sato, Tomohiro Inaba, Hitoshi Aizawa, Hideyuki Tamaki, Hiroshi Habe
Software Mentions: 2
Published: over 7 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: about 5 years ago

10.1264/jsme2.ME19017

Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs
Cited by: 35
Author(s): Lewis M. Ward, Airi Idei, Mayuko Nakagawa, Yuichiro Ueno, Woodward W. Fischer, Shawn E. McGlynn
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jaci.2017.08.044

Biallelic interferon regulatory factor 8 mutation: A complex immunodeficiency syndrome with dendritic cell deficiency, monocytopenia, and immune dysregulation
Cited by: 56
Author(s): Venetia Bigley, Sheetal Maisuria, Urszula Cytlak, Laura Jardine, Matthew A. Care, Kile Green, Merry Gunawan, Paul Milne, Rachel Dickinson, Sarah Wiscombe, David Parry, Rainer Döffinger, Arian Laurence, Claudia Fonseca, Oda Stoevesandt, Andrew R. Gennery, Andrew J. Cant, Reuben Tooze, A. John Simpson, Sophie Hambleton, Sinisa Savic, Gina M. Doody, Matthew Collin
Software Mentions: 2
Published: about 8 years ago

10.1007/s13361-015-1269-9

High Resolution Mass Spectrometry of Polyfluorinated Polyether-Based Formulation
Cited by: 36
Author(s): Ian Ken D. Dimzon, Xenia Trier, Tobias Frömel, Rick Helmus, Thomas P. Knepper, P. de Voogt
Software Mentions: 2
Published: almost 11 years ago

10.18632/oncotarget.17295

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis
Cited by: 22
Author(s): Shuofeng Hu, Hanyu Yuan, Zongcheng Li, Jian Zhang, Jiaqi Wu, Yaowen Chen, Qiang Shi, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 2
Published: over 9 years ago

10.1186/s40104-020-0427-5

Dynamic alterations in early intestinal development, microbiota and metabolome induced by in ovo feeding of L-arginine in a layer chick model
Cited by: 24
Author(s): Dong Dai, Shu‐geng Wu, Haijun Zhang, Guang‐hai Qi, Jing Wang
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.17312

Sequencing of cancer cell subpopulations identifies micrometastases in a bladder cancer patient
Cited by: 7
Author(s): Kris Prado, Kelvin X. Zhang, Matteo Pellegrini, Arnold I. Chin
Software Mentions: 2
Published: over 9 years ago

10.1186/s12934-020-01417-x

TAK-242 ameliorates DSS-induced colitis by regulating the gut microbiota and the JAK2/STAT3 signaling pathway
Cited by: 34
Author(s): Jiajia Wang, Guannan Zhu, Cheng Sun, Ke Xiong, Tingting Yao, Yuan Su, Fang Hou
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.17098

Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
Cited by: 46
Author(s): Rongjiang Tang, Wenjie Chen, Rong‐Quan He, Jiang‐Hui Zeng, Liang Liang, Shikang Li, Jie Ma, Dan Luo, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.1038/ja.2017.78

Insight into synergetic mechanisms of tetracycline and the selective serotonin reuptake inhibitor, sertraline, in a tetracycline-resistant strain of Escherichia coli
Cited by: 24
Author(s): Lili Li, Sofie Kromann, John Elmerdahl Olsen, Søren Wedel Svenningsen, Rikke Heidemann Olsen
Software Mentions: 2
Published: about 9 years ago

10.1186/s12934-017-0793-7

Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence
Cited by: 33
Author(s): Johannes Lambrecht, Nicolas Cichocki, Thomas Hübschmann, Christin Koch, Hauke Harms, Susann Müller
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12934-021-01513-6

Long-term efficacy and safety of monotherapy with a single fresh fecal microbiota transplant for recurrent active ulcerative colitis: a prospective randomized pilot study
Cited by: 26
Author(s): Fang Hou, Fang Lian, Xuejun Li, Chong‐Dao Lu, Yuan Su, Ke Xiong, Lijiu Zhang
Software Mentions: 2
Published: over 5 years ago

10.1007/s10803-020-04465-9

Atypical Development of Attentional Control Associates with Later Adaptive Functioning, Autism and ADHD Traits
Cited by: 10
Author(s): Alexandra Hendry, Emily J. H. Jones, Rachael Bedford, Linn Andersson Konke, Jannath Begum Ali, Sven Bölte, Karin C. Brocki, Ellen Demurie, Mark H. Johnson, Mirjam K. J. Pijl, Herbert Roeyers, Tony Charman
Software Mentions: 2
Published: over 6 years ago

10.15698/mic2020.04.713

Stable and destabilized GFP reporters to monitor calcineurin activity in Saccharomyces cerevisiae
Cited by: 7
Author(s): Jutta Diessl, Arpita Nandy, Christina Schug, Lukas Habernig, Sabrina Büttner
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.18058

Clinical roles of the aberrantly expressed lncRNAs in lung squamous cell carcinoma: a study based on RNA-sequencing and microarray data mining
Cited by: 70
Author(s): Wenjie Chen, Rongjiang Tang, Rong‐Quan He, Dong‐Yao Li, Liang Liang, Jiang‐Hui Zeng, Xiaohua Hu, Jie Ma, Shikang Li, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA120.013017

A novel stress-inducible CmtR-ESX3-Zn2+ regulatory pathway essential for survival of Mycobacterium bovis under oxidative stress
Cited by: 9
Author(s): Xiaohui Li, Liu Chen, Jingjing Liao, Jiechen Hui, Weihui Li, Zheng‐Guo He
Software Mentions: 2
Published: over 5 years ago

10.1111/1751-7915.12853

Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well
Cited by: 26
Author(s): Michiel H. in ‘t Zandt, Sabrina Beckmann, Ruud Rijkers, Mike S. M. Jetten, Mike Manefield, Cornelia U. Welte
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.RA120.015053

Development of a novel mammalian display system for selection of antibodies against membrane proteins
Cited by: 12
Author(s): NJ Robertson, Nancy López-Antón, Shalom A. Gurjar, Hena Khalique, Zainab A. Khalaf, Siobhan Clerkin, Vaughan R. Leydon, Richard P. Parker-Manuel, Alexander Raeside, Tom Payne, Timothy D. Jones, Len Seymour, Ryan Cawood
Software Mentions: 2
Published: over 5 years ago

10.1177/07487304211005640

Negative Energy Balance Enhances Ultradian Rhythmicity in Spring-Programmed Voles
Cited by: 9
Author(s): Laura van Rosmalen, Roelof A. Hut
Software Mentions: 2
Published: over 5 years ago

10.1117/1.JBO.25.3.035002

Diffuse reflectance spectroscopy to monitor murine colorectal tumor progression and therapeutic response
Cited by: 7
Author(s): Ariel I. Mundo, Gage J. Greening, Michael J. Fahr, Lawrence N. Hale, Elizabeth A. Bullard, Narasimhan Rajaram, Timothy J. Muldoon
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.34465

High expression of CHML predicts poor prognosis of multiple myeloma
Cited by: 2
Author(s): Weilong Zhang, Ling Cao, Xiaoni Liu, Xue He, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xiaoliang Yuan, Hongmei Jing
Software Mentions: 2
Published: over 7 years ago

10.1016/j.mex.2019.02.016

Determine the prevalence of gestational diabetes in Ardakan and its related factors
Cited by: 0
Author(s): Ahmad Moradi, Hamid Reza Morovati, Amir Teimourpour, Shahrzad Nematollahi, Monireh Faghir Ganji
Software Mentions: 2
Published: over 7 years ago

10.1186/s12885-020-6713-y

Ubiquitin-specific protease-44 inhibits the proliferation and migration of cells via inhibition of JNK pathway in clear cell renal cell carcinoma
Cited by: 14
Author(s): Jiangqiao Zhou, Tianyu Wang, Tao Qiu, Zhongbao Chen, Xiaofen Ma, Long Zhang, Jilin Zou
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.48979

Screening and bioinformatical analysis of differentially expressed genes in nasopharyngeal carcinoma
Cited by: 3
Author(s): Weiqian Guo, Xiaomin Zheng, Hua Liu, Xiaohai Zheng, Yangyang Zhang, Bin Sun, Zhenchao Tao, Jin Gao
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.20226

lncRNAs PVT1 and HAR1A are prognosis biomarkers and indicate therapy outcome for diffuse glioma patients
Cited by: 44
Author(s): Hecun Zou, Long‐Fei Wu, Yang Yi, Shuang Li, Ying Mei, Yongbin Liu, Lihua Zhang, Yuanda Cheng, Hong‐Hao Zhou
Software Mentions: 2
Published: about 9 years ago

10.1007/s11306-018-1328-x

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects
Cited by: 18
Author(s): Parastoo Fazelzadeh, Roland W. J. Hangelbroek, Peter J. Joris, Casper G. Schalkwijk, Diederik Esser, Lydia A. Afman, Thomas Hankemeier, Doris M. Jacobs, Velitchka V. Mihaleva, Sander Kersten, John van Duynhoven, Mark V. Boekschoten
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-016-0917-9

Web-TCGA: an online platform for integrated analysis of molecular cancer data sets
Cited by: 135
Author(s): Mario C. Deng, Johannes Brägelmann, Joachim L. Schultze, Sven Perner
Software Mentions: 2
Published: over 10 years ago

10.18632/oncotarget.21364

Targeting P-selectin blocks neuroblastoma growth
Cited by: 15
Author(s): Riitta Nolo, Shelley M. Herbrich, Arvind Rao, Patrick A. Zweidler‐McKay, Sankaranarayanan Kannan, Vidya Gopalakrishnan
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12968-016-0319-1

Effects of heart valve prostheses on phase contrast flow measurements in Cardiovascular Magnetic Resonance – a phantom study
Cited by: 12
Author(s): Johanna Richau, Matthias A. Dieringer, Julius Traber, Florian von Knobelsdorff‐Brenkenhoff, Andreas Greiser, Carsten Schwenke, Jeanette Schulz‐Menger
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.22197

Pseudogenes of annexin A2, novel prognosis biomarkers for diffuse gliomas
Cited by: 27
Author(s): Shuang Li, Hecun Zou, Yingying Shao, Ying Mei, Yuanda Cheng, Dongli Hu, Zhi‐Rong Tan, Hong‐Hao Zhou
Software Mentions: 2
Published: almost 9 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo11080472

Metagenomic, Metabolomic, and Functional Evaluation of Kimchi Broth Treated with Light-Emitting Diodes (LEDs)
Cited by: 2
Author(s): Yeong Ji Oh, Ye-Rin Park, Jungil Hong, Do-Yup Lee
Software Mentions: 2
Published: about 5 years ago

10.1111/jcmm.15541

The ACE2 expression in Sertoli cells and germ cells may cause male reproductive disorder after SARS‐CoV‐2 infection
Cited by: 137
Author(s): Qiaoyan Shen, Xia Xiao, Aili Aierken, Wei Y, Xiaojie Wu, Mingzhi Liao, Jinlian Hua
Software Mentions: 2
Published: about 6 years ago

10.3390/metabo10120495

Single-Step Extraction Coupled with Targeted HILIC-MS/MS Approach for Comprehensive Analysis of Human Plasma Lipidome and Polar Metabolome
Cited by: 36
Author(s): Jéssica Medina, Vera van der Velpen, Tony Teav, Yann Guitton, Héctor Gallart-Ayala, Julijana Ivanišević
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo10110473

Sphingolipid Profiling Reveals Different Extent of Ceramide Accumulation in Bovine Retroperitoneal and Subcutaneous Adipose Tissues
Cited by: 6
Author(s): Yue Hei Leung, Sonja Christiane Bäßler, Christian Koch, Theresa Scheu, Ulrich Meyer, Sven Dänicke, Korinna Huber, Ákos Kenéz
Software Mentions: 2
Published: almost 6 years ago

10.3390/metabo11080487

Antibiotic-Induced Dysbiosis of Microbiota Promotes Chicken Lipogenesis by Altering Metabolomics in the Cecum
Cited by: 15
Author(s): Tao Zhang, Hao Ding, Lan Chen, Yueyue Lin, Yongshuang Gong, Zhiming Pan, Genxi Zhang, Kaizhou Xie, Guojun Dai, Jinyu Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/metabo11070444

Dereplication, Annotation, and Characterization of 74 Potential Antimicrobial Metabolites from Penicillium Sclerotiorum Using t-SNE Molecular Networks
Cited by: 11
Author(s): Téo Hebra, Nicolas Elie, Salomé Poyer, Elsa Van Elslande, David Touboul, Véronique Éparvier
Software Mentions: 2
Published: about 5 years ago

10.1111/jcmm.16547

Prognostic value of tumour microenvironment‐related genes by TCGA database in rectal cancer
Cited by: 7
Author(s): Chao Li, Tao Liu, Yi Liu, Jiantao Zhang, Didi Zuo
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo9090176

Comparison of Differential Flavor Metabolites in Meat of Lubei White Goat, Jining Gray Goat and Boer Goat
Cited by: 16
Author(s): Wei‐Ting Wang, Bei Sun, Peisong Hu, Meifang Zhou, Su-Jun Sun, Pengfei Du, Yi Ru, Alexander Suvorov, Yongsheng Li, Yaobo Liu, Shoujing Wang
Software Mentions: 2
Published: almost 7 years ago

10.1111/jcmm.16709

USP11 degrades KLF4 via its deubiquitinase activity in liver diseases
Cited by: 14
Author(s): Hee‐Young Yang, Daeui Park, Jeong-ho Ryu, Tamina Park
Software Mentions: 2
Published: about 5 years ago

10.3390/metabo11030143

Solanum lycopersicum Seedlings. Metabolic Responses Induced by the Alkamide Affinin
Cited by: 0
Author(s): Tonatiu Campos-García, Jorge Molina‐Torres
Software Mentions: 2
Published: over 5 years ago

10.1038/srep14017

An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography
Cited by: 51
Author(s): Keitaro Yamashita, Dongqing Pan, Tomohiko Okuda, Michihiro Sugahara, Atsushi Kodan, Tomohiro Yamaguchi, Taichi Murai, Keiko Gomi, Naoki Kajiyama, Eiichi Mizohata, Mamoru Suzuki, Eriko Nango, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Jaehyun Park, Changyong Song, Takaki Hatsui, Makina Yabashi, So Iwata, Hiroaki Kato, Hideo Ago, Masaki Yamamoto, Toru Nakatsu
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep14929

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues
Cited by: 25
Author(s): Hironori Kawakami, Eiji Ohashi, Shota Kanamoto, Toshiki Tsurimoto, Tsutomu Katayama
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep16899

Quantifying the Impact of Scenic Environments on Health
Cited by: 69
Author(s): Chanuki Illushka Seresinhe, Tobias Preis, Helen Susannah Moat
Software Mentions: 2
Published: over 10 years ago

10.1038/srep20650

Feature co-localization landscape of the human genome
Cited by: 11
Author(s): Siu-Kin Ng, Taobo Hu, Xi Long, Colin Chan, Suk Ying Tsang, Hong Xue
Software Mentions: 2
Published: over 10 years ago

10.1038/srep23173

Spatiotemporal transcriptome provides insights into early fruit development of tomato (Solanum lycopersicum)
Cited by: 37
Author(s): Shuaibin Zhang, Meng Xu, Zhengkun Qiu, Ketao Wang, Yan Du, Lianfeng Gu, Xia Cui
Software Mentions: 2
Published: over 10 years ago

10.1038/srep22958

Bacterial communities of the cotton aphid Aphis gossypii associated with Bt cotton in northern China
Cited by: 42
Author(s): Yao Zhao, Shuai Zhang, Junyu Luo, Chunyi Wang, Limin Lv, Jinjie Cui
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26371

The molecular spectrum and distribution of haemoglobinopathies in Cyprus: a 20-year retrospective study
Cited by: 33
Author(s): Petros Kountouris, Ioanna Kousiappa, Thessalia Papasavva, George Christopoulos, Eleni Pavlou, Miranda Petrou, Xenia Feleki, Eleni Karitzie, Marios Phylactides, Pavlos Fanis, Carsten W. Lederer, Andriani Kyrri, Eleni Kalogerou, Christiana Makariou, Christiana Ioannou, Loukas Kythreotis, Georgia Hadjilambi, Nicoletta Andreou, Evangelia Pangalou, Irene Savvidou, Michael Angastiniotis, Michael Hadjigavriel, Maria Sitarou, Annita Kolnagou, Marina Kleanthous, Soteroula Christou
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26311

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene
Cited by: 70
Author(s): Seth Schobel, Karla M. Stucker, Martin L. Moore, Larry J. Anderson, Emma K. Larkin, Jyoti Shankar, Jayati Bera, Vinita Puri, Meghan H. Shilts, Christian Rosas‐Salazar, Rebecca Halpin, Nadia Fedorova, Susmita Shrivastava, Timothy B. Stockwell, R. Stokes Peebles, Tina V. Hartert, Suman Das
Software Mentions: 2
Published: over 10 years ago

10.3390/metabo9050082

Multi-Omics Analyses Detail Metabolic Reprogramming in Lipids, Carnitines, and Use of Glycolytic Intermediates between Prostate Small Cell Neuroendocrine Carcinoma and Prostate Adenocarcinoma
Cited by: 24
Author(s): Bei Gao, Hui Wen Lue, Jennifer Podolak, Sili Fan, Ying Zhang, Archana Serawat, Joshi J. Alumkal, Oliver Fiehn, George V. Thomas
Software Mentions: 2
Published: over 7 years ago

10.1038/srep30164

SCUBA divers as oceanographic samplers: The potential of dive computers to augment aquatic temperature monitoring
Cited by: 29
Author(s): Serena Wright, Tom Hull, D. B. Sivyer, David J. Pearce, John K. Pinnegar, Martin Sayer, Andrew O.M. Mogg, Elaine Azzopardi, Steve Gontarek, Kieran Hyder
Software Mentions: 2
Published: about 10 years ago

10.1038/srep31857

High-fat diet disrupts metabolism in two generations of rats in a parent-of-origin specific manner
Cited by: 35
Author(s): Thomas K. Chambers, Michael D. Morgan, Andreas Heger, Richard M. Sharpe, Amanda J. Drake
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32027

Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients
Cited by: 12
Author(s): Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Anita M A C Trapman-Jansen, Renée Foekens, Maxime P. Look, Marcel Smid, Carolien H.M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32598

Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Cited by: 2
Author(s): Xu Zhang, Zhilin Qu, Bing Su
Software Mentions: 2
Published: almost 10 years ago

10.1097/MD.0000000000016437

Analysis of the long non-coding RNA LINC01614 in non-small cell lung cancer
Cited by: 13
Author(s): Yan Sun, Chunhua Ling
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-018-4894-4

Untargeted lipidomic features associated with colorectal cancer in a prospective cohort
Cited by: 20
Author(s): Kelsi Perttula, Courtney Schiffman, William M. B. Edmands, Lauren Petrick, Hasmik Grigoryan, Xiaoming Cai, Marc J. Gunter, Alessio Naccarati, Silvia Polidoro, Sandrine Dudoit, Paolo Víneis, Stephen M. Rappaport
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep38302

Catalysis and Structure of Zebrafish Urate Oxidase Provide Insights into the Origin of Hyperuricemia in Hominoids
Cited by: 20
Author(s): Marialaura Marchetti, Anastasia Liuzzi, Beatrice Fermi, Romina Corsini, Claudia Folli, Valentina Speranzini, Francesco Gandolfi, Stefano Bettati, Luca Ronda, Laura Cendron, Rodolfo Berni, Giuseppe Zanotti, Riccardo Percudani
Software Mentions: 2
Published: over 9 years ago

10.1038/srep40519

Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes
Cited by: 32
Author(s): Erwan Delrieu‐Trottin, Stefano Mona, Jeffrey Maynard, Valentina Neglia, Michel Veuille, Serge Planes
Software Mentions: 2
Published: over 9 years ago

10.1155/2016/5168363

Frequency ofTNFA,INFG, andIL10Gene Polymorphisms and Their Association with MalariaVivaxand Genomic Ancestry
Cited by: 10
Author(s): Adriana Antônia da Cruz Furini, Gustavo Capatti Cassiano, Marcela Petrolini Capobianco, Sidney Emanuel Batista dos Santos, Ricardo Luiz Dantas Machado
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/5265444

The Key Ingredient Acacetin in Weishu Decoction Alleviates Gastrointestinal Motility Disorder Based on Network Pharmacology Analysis
Cited by: 4
Author(s): Xuan Guo, Xinhua Yin, Tan Hua-liang, Xiaojuan Wang, Xiao Lin
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep41748

Genome-wide association study for performance traits in chickens using genotype by sequencing approach
Cited by: 23
Author(s): Fábio Pértille, Gabriel Costa Monteiro Moreira, Ricardo Zanella, José de Ribamar da Silva Nunes, Clarissa Boschiero, Gregorí Alberto Rovadoscki, Gérson Barreto Mourão, Mônica Corrêa Ledur, Luiz Lehmann Coutinho
Software Mentions: 2
Published: over 9 years ago

10.1155/2019/8146257

A Th2 Cytokine Profile in Appendicular Lavage Fluid Suggests Allergy as a Possible Etiology for Acute Appendicitis
Cited by: 12
Author(s): Nuno Carvalho, André Barros, Hélder Coelho, Catarina Moita, Ana Neves‐Costa, Dora Pedroso, Filipe Borges, Luís Moita, Paulo Costa
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep43747

The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania
Cited by: 33
Author(s): Simone Coughlan, Peter O. Mulhair, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 9 years ago

10.1038/srep43261

Prolonged high-fat diet induces gradual and fat depot-specific DNA methylation changes in adult mice
Cited by: 36
Author(s): Ramona A J Zwamborn, Roderick C. Slieker, Petra Mulder, Inge Zoetemelk, Lars Verschuren, H. Eka D. Suchiman, Karin Toet, S. Droog, P. Eline Slagboom, Teake Kooistra, Robert Kleemann, Bastiaan T. Heijmans
Software Mentions: 2
Published: over 9 years ago

10.1155/2020/3432587

Identification of Potential Biomarkers and Immune Features of Sepsis Using Bioinformatics Analysis
Cited by: 17
Author(s): Fangchen Gong, Ran Ji, Yuming Wang, Zhitao Yang, Ying Chen, Enqiang Mao, Erzhen Chen
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep45365

Epigenome mapping highlights chromatin-mediated gene regulation in the protozoan parasite Trichomonas vaginalis
Cited by: 12
Author(s): Min Song, Mi-Kyoung Kim, Yun Young Choi, Myung‐hee Yi, Juri Kim, Soon‐Jung Park, Tai Soon Yong, Hyoung‐Pyo Kim
Software Mentions: 2
Published: over 9 years ago

10.1038/srep46148

An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort
Cited by: 6
Author(s): Yingleong Chan, Michael Tung, Alexander S. Garruss, Sarah W. Zaranek, Ying Chan, Jeantine E. Lunshof, Alexander Wait Zaranek, Madeleine Ball, Michael F. Chou, Elaine T. Lim, George M. Church
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-00171-2

Exploring the microbial community (microflora) associated with ovine Haemonchus contortus (macroflora) field strains
Cited by: 22
Author(s): Saeed El‐Ashram, Xun Suo
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01856-4

Establishment of a Strong Link Between Smoking and Cancer Pathogenesis through DNA Methylation Analysis
Cited by: 57
Author(s): Yunlong Ma, Ming D. Li
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03975-4

Postprandial metabolic response of breast-fed infants and infants fed lactose-free vs regular infant formula: A randomized controlled trial
Cited by: 38
Author(s): Carolyn M. Slupsky, Xuan He, Olle Hernell, Yvonne Andersson, Colin D. Rudolph, Bo Lönnerdal, Christina West
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-03918-z

Insecticide susceptibility of Anopheles mosquitoes changes in response to variations in the larval environment
Cited by: 45
Author(s): Henry F. Owusu, Nakul Chitnis, Pie Müller
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-04751-0

The temporal dependence of exploration on neotic style in birds
Cited by: 32
Author(s): Mark O’Hara, Berenika Mioduszewska, Auguste Marie Philippa von Bayern, Alice M. I. Auersperg, Thomas Bugnyar, Anna Wilkinson, Ludwig Huber, Gyula K. Gajdon
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-04708-3

Climate Classification is an Important Factor in Assessing Quality-of-Care Across Hospitals
Cited by: 10
Author(s): Mary Regina Boland, Pradipta Parhi, Pierre Gentine, Nicholas P. Tatonetti
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-05662-w

Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny
Cited by: 59
Author(s): François‐Étienne Sylvain, Nicolas Derôme
Software Mentions: 2
Published: about 9 years ago

10.3390/md19040204

Seasonal Variation of the Proximate Composition, Mineral Content, Fatty Acid Profiles and Other Phytochemical Constituents of Selected Brown Macroalgae
Cited by: 26
Author(s): Marco García‐Vaquero, Gaurav Rajauria, Marta Miranda, T. Sweeney, Marta López‐Alonso, John V. O’Doherty
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.25327

Outcomes of neoadjuvant and adjuvant chemotherapy in stage 2 and 3 non-small cell lung cancer: an analysis of the National Cancer Database
Cited by: 21
Author(s): Matthew T. MacLean, Xin Luo, Shidan Wang, Kemp H. Kernstine, David E. Gerber, Yang Xie
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-06082-6

Thresholds of biodiversity and ecosystem function in a forest ecosystem undergoing dieback
Cited by: 13
Author(s): Paul M. Evans, Adrian C. Newton, Elena Cantarello, Philip A. Martin, Neil Sanderson, Davey L. Jones, Nadia Barsoum, Joan Cottrell, Stuart W. A’Hara, Lauren Fuller
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07062-6

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast
Cited by: 2
Author(s): Nadra Al-Husini, Ali Sharifi, Seyed Ahmad Mousavi, Hamidreza Chitsaz, Athar Ansari
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07241-5

In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria
Cited by: 31
Author(s): Abhishek Rajput, Manoj Kumar
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07278-6

Bacteriophages as potential new mammalian pathogens
Cited by: 74
Author(s): George Tetz, Kelly V. Ruggles, Hua Zhou, Adriana Heguy, Aristotelis Tsirigos, Victor Tetz
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-08146-z

Decadal trends in Red Sea maximum surface temperature
Cited by: 133
Author(s): Veronica Chaidez, Denis Dreano, Susana Agustı́, Carlos M. Duarte, Ibrahim Hoteit
Software Mentions: 2
Published: about 9 years ago

10.3390/md17090498

Comparative Genomic Insights into Secondary Metabolism Biosynthetic Gene Cluster Distributions of Marine Streptomyces
Cited by: 28
Author(s): Lin Xu, Kaixiong Ye, Wen-Hua Dai, Cong Sun, Lian‐Hua Xu, Bingnan Han
Software Mentions: 2
Published: almost 7 years ago

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