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Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: over 2 years ago
4,921 dependent packages
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Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
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Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
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Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.3390/pathogens9120982
Proteomic Profiling of the Liver, Hepatic Lymph Nodes, and Spleen of Buffaloes Infected with Fasciola gigantica
Cited by: 6
Author(s): Rui-Si Hu, Fu-Kai Zhang, Hany M. Elsheikha, Qiao-Ni Ma, Muhammad Ehsan, Quan Zhao, Xingquan Zhu
Software Mentions: 2
Published: over 5 years ago
10.3390/pathogens9110941
Molecular Typing of Neisseria gonorrhoeae Clinical Isolates in Russia, 2018–2019: A Link Between penA Alleles and NG-MAST Types
Cited by: 7
Author(s): Ilya Kandinov, Ekaterina Dementieva, Dmitry Kravtsov, А. В. Честков, А. А. Кубанов, В С Соломка, D. G. Deryabin, Dmitry Gryadunov, Boris Shaskolskiy
Software Mentions: 2
Published: over 5 years ago
10.3390/pathogens9060421
Quantification of the Animal Tuberculosis Multi-Host Community Offers Insights for Control
Cited by: 29
Author(s): Nuno Santos, Céline Richomme, Telmo Nunes, Joaquı́n Vicente, Paulo C. Alves, José de la Fuente, Margarida Correia-Neves, Maria‐Laura Boschiroli, Richard J. Delahay, Christian Gortázar
Software Mentions: 2
Published: about 6 years ago
10.3390/pathogens9110888
Genomic Features and Evolution of the Parapoxvirus during the Past Two Decades
Cited by: 4
Author(s): Xiaoting Yao, Ming Pang, Tianxing Wang, Xi Chen, Xidian Tang, Jianjun Chang, Dekun Chen, Wentao Ma
Software Mentions: 2
Published: over 5 years ago
10.3390/pathogens10091183
Nanopore-Based Surveillance of Zoonotic Bacterial Pathogens in Farm-Dwelling Peridomestic Rodents
Cited by: 7
Author(s): Nusrat Jahan, Laramie L. Lindsey, Evan J. Kipp, Adam Reinschmidt, Brad Heins, Amy M. Runck, Peter A. Larsen
Software Mentions: 2
Published: almost 5 years ago
10.3390/pathogens10091117
Screening of Dietary Ingredients against the Honey Bee Parasite Nosema ceranae
Cited by: 13
Author(s): Chiara Braglia, Daniele Alberoni, Martín Pablo Porrini, Melisa Paula Garrido, Loredana Baffoni, Diana Di Gioia
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.8176
Systematic evaluation of the gut microbiome of swamp eel (<i>Monopterus albus</i>) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.2910
The wild tomato species<i>Solanum chilense</i>shows variation in pathogen resistance between geographically distinct populations
Cited by: 21
Author(s): Remco Stam, Daniela Scheikl, Aurélien Tellier
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.494
RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments
Cited by: 125
Author(s): Henning Seedorf, Sandra Kittelmann, Gemma Henderson, Peter H. Janssen
Software Mentions: 2
Published: almost 12 years ago
10.7717/peerj.8923
Dynamic changes in intestinal microbiota in young forest musk deer during weaning
Cited by: 6
Author(s): Yimeng Li, Minghui Shi, Tianxiang Zhang, Xin Hu, Baofeng Zhang, Sheng‐Quan Xu, Jianhong Ding, Defu Hu, Shuqiang Liu
Software Mentions: 2
Published: about 6 years ago
10.7717/peerj.8160
Rediscovery of <i>Osteocephalus vilarsi</i> (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog
Cited by: 9
Author(s): Miquéias Ferrão, Jiří Moravec, Leandro João Carneiro de Lima Moraes, Vinícius T. de Carvalho, Marcelo Gordo, Albertina P. Lima
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.5649
Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing
Cited by: 24
Author(s): Zhifang Zhou, Guanghui Ling, Ning Ding, Zhe Xun, Ce Zhu, Hong Hua, Xiaochi Chen
Software Mentions: 2
Published: over 7 years ago
10.7717/peerj.10460
Multi-year pair-bonding in Murray cod (<i>Maccullochella peelii</i>)
Cited by: 2
Author(s): Alan J Couch, Fiona Dyer, Mark Lintermans
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.5741
Effects of wine-cap<i>Stropharia</i>cultivation on soil nutrients and bacterial communities in forestlands of northern China
Cited by: 17
Author(s): Sai Gong, Chen Chen, Jingxian Zhu, Guang-Yao Qi, Shuxia Jiang
Software Mentions: 2
Published: over 7 years ago
10.7717/peerj.10183
A 14 immune-related gene signature predicts clinical outcomes of kidney renal clear cell carcinoma
Cited by: 8
Author(s): Yong Zou, Chuan Hu
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.7265
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
Cited by: 43
Author(s): Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh Fen Li, Benjamin Bolduc, Josué A. Rodríguez-Ramos, Emiley A. Eloe‐Fadrosh, V. I. Rich, Matthew B. Sullivan
Software Mentions: 2
Published: almost 7 years ago
10.7717/peerj.10926
Identification of fibroblast activation-related genes in two acute kidney injury models
Cited by: 4
Author(s): Weiming Deng, Xuxia Wei, Zhanwen Dong, Jinhua Zhang, Zhengyu Huang, Ning Na
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.9088
Effect of predation risk and ectoparasitic louse flies on physiological stress condition of the red-tailed tropicbird (Phaethon rubricauda) from Rapa Nui and Salas & Gómez islands
Cited by: 1
Author(s): Nicolás Luna, Andrea I. Varela, Guillermo Luna‐Jorquera, Katherina Brokordt
Software Mentions: 2
Published: almost 6 years ago
10.7717/peerj.3089
From big data to diagnosis and prognosis: gene expression signatures in liver hepatocellular carcinoma
Cited by: 30
Author(s): Hong Yang, Xin Zhang, Xiujun Cai, Dong‐Yue Wen, Zhihua Ye, Liang Liang, Lu Zhang, Hanlin Wang, Gang Chen, Zhaoyong Feng
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.2777
Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
Cited by: 138
Author(s): Simon Roux, Natalie Solonenko, Dang Vinh, Bonnie T. Poulos, Sarah M. Schwenck, Dawn B. Goldsmith, Maureen L. Coleman, Mya Breitbart, Matthew B. Sullivan
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.5710
Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
Cited by: 9
Author(s): Rodrigo Gouvêa Taketani, Marta Alves Moitinho, Tim H. Mauchline, I. S. de Melo
Software Mentions: 2
Published: over 7 years ago
10.7717/peerj.12075
Prediction of the mechanism of miRNAs in laryngeal squamous cell carcinoma based on the miRNA-mRNA regulatory network
Cited by: 1
Author(s): Jun Ma, Xiaodong Hu, Baoqiang Dai, Qiang Wang, Hongqin Wang
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.7740
Bark tissue transcriptome analyses of inverted <i>Populus yunnanensis</i> cuttings reveal the crucial role of plant hormones in response to inversion
Cited by: 4
Author(s): Anpei Zhou, Peihua Gan, Dan Zong, Fu‐Zhen Xuan, Yuanyuan Zhong, Siqi Li, Jian Yu, Chengzhong He
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.10729
Increased precipitation enhances soil respiration in a semi-arid grassland on the Loess Plateau, China
Cited by: 7
Author(s): Yutao Wang, Yi Xie, Gillian L. Rapson, Hao Ma, Le Jing, Yi Zhang, Juan Zhang, Jianping Li
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.11813
Aberrant expression of PROS1 correlates with human papillary thyroid cancer progression
Cited by: 4
Author(s): Jing Wang, Minxiang Lei, Zhijie Xu
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.2529
Bacterial community diversity of the deep-sea octocoral<i>Paramuricea placomus</i>
Cited by: 49
Author(s): Christina A. Kellogg, Steve W. Ross, Sandra Brooke
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.9653
Increasing methane (CH<sub>4</sub>) emissions and altering rhizosphere microbial diversity in paddy soil by combining Chinese milk vetch and rice straw
Cited by: 7
Author(s): Qiang Ma, Jiwei Li, Muhammad Aamer, Huang Guo-qin
Software Mentions: 2
Published: almost 6 years ago
10.7717/peerj.4848
The global burden of HIV-1 drug resistance in the past 20 years
Cited by: 24
Author(s): Maurizio Zazzi, Hui Hu, Mattia Prosperi
Software Mentions: 2
Published: about 8 years ago
10.3390/plants8070239
Identification of Factors Linked to Higher Water-Deficit Stress Tolerance in Amaranthus hypochondriacus Compared to Other Grain Amaranths and A. hybridus, Their Shared Ancestor
Cited by: 11
Author(s): América Tzitziki González-Rodríguez, Ismael Cisneros-Hernández, Jonathan Acosta Bayona, Enrique Ramı́rez-Chávez, Norma Martı́nez-Gallardo, Erika Mellado-Mojica, Mercedes G. López-Pérez, Jorge Molina‐Torres, John Paul Délano‐Frier
Software Mentions: 2
Published: almost 7 years ago
10.3390/plants9101372
Molecular and Biochemical Differences in Leaf Explants and the Implication for Regeneration Ability in Rorippa aquatica (Brassicaceae)
Cited by: 2
Author(s): Rumi Amano, Risa Momoi, Emi Omata, Taiga Nakahara, Kaori Kaminoyama, Mikiko Kojima, Yumiko Takebayashi, Shuka Ikematsu, Yuki Okegawa, Tomoaki Sakamoto, Hiroyuki Kasahara, Hitoshi Sakakibara, Ken Motohashi, Seisuke Kimura
Software Mentions: 2
Published: over 5 years ago
10.3390/plants10020309
Physiological Adaptation to Water Salinity in Six Wild Halophytes Suitable for Mediterranean Agriculture
Cited by: 19
Author(s): Roberta Calone, Simone Bregaglio, Rabab Sanoubar, Enrico Noli, Carla Lambertini, Lorenzo Barbanti
Software Mentions: 2
Published: over 5 years ago
10.3390/plants9111605
Insights into Comparative Genomics, Codon Usage Bias, and Phylogenetic Relationship of Species from Biebersteiniaceae and Nitrariaceae Based on Complete Chloroplast Genomes
Cited by: 12
Author(s): Xiaofeng Chi, Faqi Zhang, Dong Qian, Shilong Chen
Software Mentions: 2
Published: over 5 years ago
10.3390/plants10081690
A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity
Cited by: 4
Author(s): Woo‐Jong Hong, Jiang Xu, Seok-Hyun Choi, Yujin Kim, Suntae Kim, Jong‐Seong Jeon, Ki‐Hong Jung
Software Mentions: 2
Published: almost 5 years ago
10.3390/plants10040612
Does Elevated [CO2] Only Increase Root Growth in the Topsoil? A FACE Study with Lentil in a Semi-Arid Environment
Cited by: 3
Author(s): Maryse Bourgault, Sabine Tausz‐Posch, Mark C. Greenwood, Markus Löw, Samuel Henty, Roger Armstrong, G. O'Leary, Glenn J. Fitzgerald, Michael Tausz
Software Mentions: 2
Published: about 5 years ago
10.3390/plants9050661
Effects of Water Regime, Genotype, and Formative Stages on the Agro-Physiological Response of Sugarcane (Saccharum officinarum L.) to Drought
Cited by: 8
Author(s): Jose Arnel O. Reyes, Arvin S. Carpentero, P.J.A. Santos, E. F. Delfin
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pbio.3000113
β-glucan–dependent shuttling of conidia from neutrophils to macrophages occurs during fungal infection establishment
Cited by: 21
Author(s): Vahid Pazhakh, Felix Ellett, Ben A. Croker, Joanne A. O’Donnell, Luke Pase, Keith E. Schulze, R. Stefan Greulich, Aakash Gupta, Constantino Carlos Reyes-Aldasoro, Alex Andrianopoulos, Graham J. Lieschke
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pbio.2003026
Ethoscopes: An open platform for high-throughput ethomics
Cited by: 74
Author(s): Quentin Geissmann, Luis García Rodríguez, Esteban J. Beckwith, Alice S. French, Arian R. Jamasb, Giorgio F. Gilestro
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pbio.2001867
Integrated time-lapse and single-cell transcription studies highlight the variable and dynamic nature of human hematopoietic cell fate commitment
Cited by: 48
Author(s): Alice Moussy, Jérémie Cosette, Romuald Parmentier, Cindy da Silva, Guillaume Corre, Richard Angélique, Olivier Gandrillon, Daniel Stockholm, Andràs Páldi
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pbio.3001136
Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network
Cited by: 56
Author(s): Lida Derevnina, Mauricio P Contreras, Hiroaki Adachi, Jessica Upson, Angel Vergara Cruces, Rongrong Xie, Jan Sklenář, Frank L.H. Menke, Sam T. Mugford, Dan MacLean, Wenbo Ma, Saskia A. Hogenhout, A. Goverse, Abbas Maqbool, Chih‐Hang Wu, Sophien Kamoun
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pbio.1002264
Meta-research: Evaluation and Improvement of Research Methods and Practices
Cited by: 193
Author(s): John P. A. Ioannidis, Daniele Fanelli, Debbie Drake Dunne, Steven N. Goodman
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pbio.3001008
Neuroinflammation in the normal-appearing white matter (NAWM) of the multiple sclerosis brain causes abnormalities at the nodes of Ranvier
Cited by: 22
Author(s): Patricia Gallego-Delgado, Rachel James, Eleanor Browne, Joanna Meng, Swetha Umashankar, Li Yi Tan, Carmen Picón, Nicholas D. Mazarakis, A. Aldo Faisal, Owain W. Howell, Richard Reynolds
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pbio.3000636
Millipede genomes reveal unique adaptations during myriapod evolution
Cited by: 15
Author(s): Zhe Qu, Wenyan Nong, Wai Lok So, Tom Barton-Owen, Yiqian Li, Thomas Leung, Chade Li, Tobias Baril, Hon Kit Wong, Thomas Swale, Ting‐Fung Chan, Alexander Hayward, Sai-Ming Ngai, Jerome H.L. Hui
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1003405
Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics
Cited by: 47
Author(s): Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie‐Anne Loriot, Paul Avillach
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pcbi.1009120
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission
Cited by: 33
Author(s): Paul Tupper, Caroline Colijn
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pcbi.1006372
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers
Cited by: 6
Author(s): Alena van Bömmel, Michael I. Love, Ho‐Ryun Chung, Martin Vingron
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pgen.1004369
Recent Mitochondrial DNA Mutations Increase the Risk of Developing Common Late-Onset Human Diseases
Cited by: 128
Author(s): Gavin Hudson, Aurora Gómez-Durán, I. J. Wilson, Patrick F. Chinnery
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pgen.1005806
Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development
Cited by: 20
Author(s): Nuno D. Pires, Marian Bemer, Lena Müller, Célia Baroux, Charles Spillane, Ueli Grossniklaus
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pgen.1005583
DNA Methylation Landscapes of Human Fetal Development
Cited by: 70
Author(s): Roderick C. Slieker, Matthias S Roost, Liesbeth van Iperen, H. Eka D. Suchiman, Elmar W. Tobi, Françoise Carlotti, Eelco J.P. de Koning, P. Eline Slagboom, Bastiaan T. Heijmans, Susana M. Chuva de Sousa Lopes
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pgen.1004830
Extensive Copy-Number Variation of Young Genes across Stickleback Populations
Cited by: 69
Author(s): Frédéric J. J. Chain, Philine G. D. Feulner, Mahesh Panchal, Christophe Eizaguirre, Irene E. Samonte, Martin Kalbe, Tobias L. Lenz, Monika Stoll, Erich Bornberg‐Bauer, Manfred Milinski, Thorsten B. H. Reusch
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pgen.1006977
Gene-environment interaction study for BMI reveals interactions between genetic factors and physical activity, alcohol consumption and socioeconomic status
Cited by: 123
Author(s): Mathias Rask‐Andersen, Torgny Karlsson, Weronica E. Ek, Åsa Johansson
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0226370
Effects of SCUBA bubbles on counts of roving piscivores in a large remote marine protected area
Cited by: 1
Author(s): Keolohilani H. Lopes, Ivor D. Williams, Randall K. Kosaki, Andrew K. Gray, Jason C. Leonard
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0237951
Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing
Cited by: 32
Author(s): Yahya Z. A. Gaafar, Heiko Ziebell
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0173359
Field evaluation of a blood based test for active tuberculosis in endemic settings
Cited by: 21
Author(s): Aasia Khaliq, Resmi Ravindran, Syed Fahadulla Hussainy, Viwanathan V. Krishnan, Atiqa Ambreen, Noshin Wasim Yusuf, Shagufta Irum, Abdul Rashid, Muhammad Jamil, Fareed Zaffar, Muhammad Nawaz Chaudhry, Puneet Kumar Gupta, Muhammad Akhtar, Imran Khan
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0251259
Extracellular vesicle-enriched miRNA profiles across pregnancy in the MADRES cohort
Cited by: 9
Author(s): Helen Foley, Caitlin G. Howe, Sandrah P. Eckel, Thomas Chavez, Lili Gevorkian, Eileen Granada Reyes, Bethany Kapanke, Danilo Martínez, Shanyan Xue, Shakira F. Suglia, Theresa M. Bastain, Carmen J. Marsit, Carrie V. Breton
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0082751
Global Assessment of Antrodia cinnamomea-Induced MicroRNA Alterations in Hepatocarcinoma Cells
Cited by: 10
Author(s): Yen–Ju Chen, Mike W.C. Thang, Yu Tzu Chan, Yu-Feng Huang, Nianhan Ma, Alice L. Yu, Ching‐Yi Wu, Miao Hu, Kuo Ping Chiu
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0191720
Environmental DNA (eDNA): A tool for quantifying the abundant but elusive round goby (Neogobius melanostomus)
Cited by: 65
Author(s): Meredith B. Nevers, Muruleedhara N. Byappanahalli, Charles Morris, Dawn A. Shively, Katarzyna Przybyla‐Kelly, Ashley M. Spoljaric, Joshua Dickey, Edward F. Roseman
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0158528
Impaired Granuloma Formation in Sepsis: Impact of Monocytopenia
Cited by: 5
Author(s): Julie Alingrin, Benjamin Coiffard, Julien Textoris, P. Bélénotti, Aurélie Daumas, Marc Léone, Jean‐Louis Mège
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0202342
QTL analyses for tolerance to abiotic stresses in a common bean (Phaseolus vulgaris L.) population
Cited by: 41
Author(s): Lucy M. Díaz, Jaumer Ricaurte, Eduardo Tovar, César Cajiao, Henry Terán, Miguel Grajales, José A. Polanía, Idupulapati M. Rao, Stephen E. Beebe, Bodo Raatz
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0238237
Household storage, surplus and supra-household storage in prehistoric and protohistoric societies of the Western Mediterranean
Cited by: 9
Author(s): Georgina Prats, Ferran Antolín, Natàlia Alonso
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0169990
Up, Down, Near, Far: An Online Vestibular Contribution to Distance Judgement
Cited by: 8
Author(s): Ágoston Török, Elisa Raffaella Ferrè, Elena Kokkinara, Valéria Csépe, David Swapp, Patrick Haggard
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0170655
SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.)
Cited by: 40
Author(s): Annarita Marrano, Giovanni Birolo, M.L. Prazzoli, Silvia Lorenzi, Giorgio Valle, S. Grando
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0233065
Single-cell amplicon sequencing reveals community structures and transmission trends of protist-associated bacteria in a termite host
Cited by: 6
Author(s): M. A. Stephens, Daniel J. Gage
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0220522
Humoral immune responses against gut bacteria in dogs with inflammatory bowel disease
Cited by: 16
Author(s): Sirikul Soontararak, Lyndah Chow, Valerie Johnson, Jonathan Coy, Craig B. Webb, Sara Wennogle, Steven Dow
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0191992
Potential disruption of seed dispersal in the absence of a native Kauai thrush
Cited by: 5
Author(s): Monica Kaushik, Liba Pejchar, Lisa H. Crampton
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0127234
Effort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils
Cited by: 31
Author(s): Zewei Song, Dan Schlatter, Peter G. Kennedy, Linda L. Kinkel, H. Corby Kistler, Nhu Nguyen, Scott T. Bates
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0171781
Interpretation of metabolic memory phenomenon using a physiological systems model: What drives oxidative stress following glucose normalization?
Cited by: 9
Author(s): Veronika Voronova, Kirill Zhudenkov, Gabriel Helmlinger, Kirill Peskov
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0240449
The plasma lipidome of the Quaker parrot (Myiopsitta monachus)
Cited by: 6
Author(s): Hugues Beaufrère, Sara Gardhouse, Richard D. Wood, Ken D. Stark
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0107721
Interpretation of Appearance: The Effect of Facial Features on First Impressions and Personality
Cited by: 41
Author(s): Karin Marie Brandt Wolffhechel, Jens Fagertun, Ulrik Plesner Jacobsen, Wiktor Majewski, Astrid Sofie Hemmingsen, Catrine Lohmann Larsen, Sofie Katrine Lorentzen, Hanne Østergaard Jarmer
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0228645
Machine learning models for net photosynthetic rate prediction using poplar leaf phenotype data
Cited by: 13
Author(s): Xiaoyu Zhang, Ziyuan Huang, Xue‐Hui Su, Andrew M. H. Siu, Yuepeng Song, Deqiang Zhang, Qing Fang
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0188522
Can narrow-bandwidth light from UV-A to green alter secondary plant metabolism and increase Brassica plant defenses against aphids?
Cited by: 20
Author(s): Ole Rechner, Susanne Neugart, Monika Schreiner, Sasa Wu, Hans‐Michael Poehling
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0172918
Long-term genetic selection reduced prevalence of hip and elbow dysplasia in 60 dog breeds
Cited by: 40
Author(s): Anita M. Oberbauer, G.G. Keller, Thomas R. Famula
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0134465
HdhQ111 Mice Exhibit Tissue Specific Metabolite Profiles that Include Striatal Lipid Accumulation
Cited by: 20
Author(s): Jeffrey B. Carroll, Amy Deik, Elisa Fossale, Rory M. Weston, Jolene R. Guide, Jamshid Arjomand, Seung Kwak, Clary B. Clish, Marcy E. MacDonald
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0239452
Early antiretroviral therapy for HIV-infected patients admitted to an intensive care unit (EARTH-ICU): A randomized clinical trial
Cited by: 3
Author(s): Márcio Manozzo Boniatti, José Augusto Santos Pellegrini, Leonardo da Silva Marques, Josiane França John, Luiz Gustavo Marin, Lina R. D. M. Maito, Thiago Lisboa, Lucas Petri Damiani, Diego Rodrigues Falci
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0206468
Useful distracting information: ERP correlates of distractors in stimulus-response-episodes
Cited by: 1
Author(s): Lea Donata Priester, Daniel Wiswede
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0229726
Environmental impact on the temporal production of chasmogamous and cleistogamous flowers in the mixed breeding system of Viola pubescens
Cited by: 12
Author(s): Anne L. Sternberger, Anirudh V. S. Ruhil, D.I. Rosenthal, Harvey E. Ballard, Sarah E. Wyatt
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0225073
Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis
Cited by: 3
Author(s): O. I. Azeez, Jan G. Myburgh, Anna-Marì Bosman, Jonathan Featherston, Kgomotso P. Sibeko-Matjilla, Marinda C. Oosthuizen, Joseph Panashe Chamunorwa
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0228397
Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars
Cited by: 8
Author(s): Shigeo Takumi, Seito Mitta, Saburô Kômura, Tatsuya Ikeda, Hitoshi Matsunaka, Kazuhiro Sato, Kentaro Yoshida, Koji Murai
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0255353
Gender differences in physical activity and sedentary behavior: Results from over 200,000 Latin-American children and adolescents
Cited by: 27
Author(s): Javier Brazo-Sayavera, Salomé Aubert, Joel D. Barnes, Silvia A. González, Mark S. Tremblay
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0128517
Impacts of Chromatin States and Long-Range Genomic Segments on Aging and DNA Methylation
Cited by: 25
Author(s): Dan Sun, Soojin V. Yi
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0230153
Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach
Cited by: 19
Author(s): Gisèle L. Herren, Joos Habraken, Lieven Waeyenberge, Annelies Haegeman, Nicole Viaene, Mathias Cougnon, Dirk Reheul, Hanne Steel, Wim Bert
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0245908
LACTB mRNA expression is increased in pancreatic adenocarcinoma and high expression indicates a poor prognosis
Cited by: 7
Author(s): Jian Xie, Yang Peng, Xiaoyu Chen, Qigang Li, Bin Jian, Ze-Lin Wen, Shengchun Liu
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0186259
Testing efficacy of distance and tree-based methods for DNA barcoding of grasses (Poaceae tribe Poeae) in Australia
Cited by: 17
Author(s): Joanne L. Birch, N. G. Walsh, David J. Cantrill, Gareth D. Holmes, Daniel J. Murphy
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0074479
Genomewide Variation in an Introgression Line of Rice-Zizania Revealed by Whole-Genome re-Sequencing
Cited by: 13
Author(s): Zhenhui Wang, Di Zhang, Yan Bai, Yunhong Zhang, Ying Liu, Ying Wu, Xiuyun Lin, Jiawei Wen, Chunming Xu, Linfeng Li, Bao Liu
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0251368
SARS-CoV-2: Possible recombination and emergence of potentially more virulent strains
Cited by: 50
Author(s): Dania Haddad, Sumi Elsa John, Anwar Mohammad, Maha M. Hammad, Prashantha Hebbar, Arshad Channanath, Rasheeba Nizam, Sarah Al-Qabandi, Ashraf Al Madhoun, Abdullah Alshukry, Hamad Ali, Thangavel Alphonse Thanaraj, Fahd Al-Mulla
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0237274
Population reduction by hunting helps control human–wildlife conflicts for a species that is a conservation success story
Cited by: 11
Author(s): David L. Garshelis, Karen V. Noyce, Véronique St‐Louis
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0115574
Stochastic Fluctuations and Distributed Control of Gene Expression Impact Cellular Memory
Cited by: 34
Author(s): Guillaume Corre, Daniel Stockholm, Ophélie Arnaud, Gaël Kaneko, J. Viñuelas, Yuriko Yamagata, Thi My Anh Neildez-Nguyen, Jean-Jacques Kupiec, Guillaume Beslon, Olivier Gandrillon, Andràs Páldi
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0221226
Structural and biochemical studies of an NB-ARC domain from a plant NLR immune receptor
Cited by: 39
Author(s): John F. C. Steele, Richard K. Hughes, Mark J. Banfield
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0228065
Towards a global understanding of the drivers of marine and terrestrial biodiversity
Cited by: 35
Author(s): Tyler Gagne, Gabriel Reygondeau, Clinton N. Jenkins, Joseph O. Sexton, Steven J. Bograd, Elliott L. Hazen, Kyle S. Van Houtan
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0203953
Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA
Cited by: 18
Author(s): Tomofumi Kurobe, Peggy W. Lehman, Bruce G. Hammock, Melissa B. Bolotaolo, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0179763
Urban air quality forecasting based on multi-dimensional collaborative Support Vector Regression (SVR): A case study of Beijing-Tianjin-Shijiazhuang
Cited by: 64
Author(s): Bingchun Liu, Arihant Binaykia, Pei‐Chann Chang, Manoj Kumar Tiwari, Cheng-Chin Tsao
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0114630
CD4+CD25hiFOXP3+ Cells in Cord Blood of Neonates Born from Filaria Infected Mother Are Negatively Associated with CD4+Tbet+ and CD4+RORγt+ T Cells
Cited by: 9
Author(s): Ulysse Ateba-Ngoa, Ghyslain Mombo-Ngoma, Eva Christine Zettlmeissl, Luciën E. P. M. van der Vlugt, Sanne E. de Jong, Pierre‐Blaise Matsiegui, Michael Ramharter, Peter G. Kremsner, Maria Yazdanbakhsh, Ayôla Akim Adegnika
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0165691
Metagenomic Investigation of Plasma in Individuals with ME/CFS Highlights the Importance of Technical Controls to Elucidate Contamination and Batch Effects
Cited by: 15
Author(s): Ruth R. Miller, Miguel Uyaguari, Mark McCabe, Vincent Montoya, Jennifer L. Gardy, Shoshana Parker, Theodore S. Steiner, William W. L. Hsiao, Matthew J. Nesbitt, Patrick Tang, David M. Patrick
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0220981
Analyses of single nucleotide polymorphisms identified by ddRAD-seq reveal genetic structure of tea germplasm and Japanese landraces for tea breeding
Cited by: 18
Author(s): Hiroto Yamashita, Hideyuki Katai, Lina Kawaguchi, Atsushi J. Nagano, Yoriyuki Nakamura, Akio Morita, Takashi Ikka
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0231545
Occurrence of Mycoplasma gallisepticum in wild birds: A systematic review and meta-analysis
Cited by: 27
Author(s): Anna Sawicka, Maciej Durkalec, Grzegorz Tomczyk, Olimpia Kursa
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0244489
Consistent patterns in 16S and 18S microbial diversity from the shells of the common and widespread red-eared slider turtle (Trachemys scripta)
Cited by: 3
Author(s): Matthew Parks, Cameron Kedy, Casey Skalla
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0224252
Behavioral predictors of subsequent respiratory illness signs in dogs admitted to an animal shelter
Cited by: 5
Author(s): Alexandra Protopopova, Nathaniel J. Hall, Kelsea M. Brown, Allison Andrukonis, Jessica P. Hekman
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0207884
Preeclampsia and academic performance in children: A nationwide study from Iceland
Cited by: 24
Author(s): Friðgeir Andri Sverrisson, Brian T. Bateman, Thor Aspelund, Sigurgrímur Skúlason, Helga Zoëga
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0239998
Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species
Cited by: 10
Author(s): Tyler C. Helmann, Adam M. Deutschbauer, Steven E. Lindow
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0222503
Genetic diversity and population structure of four Chinese rabbit breeds
Cited by: 13
Author(s): Anyong Ren, Kun Du, Xianbo Jia, Rui Yang, Jie Wang, Shiyi Chen, Songjia Lai
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0186290
Dynamic microbial populations along the Cuyahoga River
Cited by: 11
Author(s): Matthew Cannon, Joseph M. Craine, James Hester, Amanda Shalkhauser, E. Ricky Chan, Kyle Logue, Scott T. Small, David Serre
Software Mentions: 2
Published: over 8 years ago