cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1111/pbi.12997

Tracking disease resistance deployment in potato breeding by enrichment sequencing
Cited by: 50
Author(s): Miles Armstrong, Jack H. Vossen, Joanne Tze-Yin Lim, R.C.B. Hutten, Jianfei Xu, Shona Strachan, Brian Harrower, Nicolas Champouret, Eleanor M. Gilroy, Ingo Hein
Software Mentions: 2
Published: about 8 years ago

10.1038/srep30164

SCUBA divers as oceanographic samplers: The potential of dive computers to augment aquatic temperature monitoring
Cited by: 29
Author(s): Serena Wright, Tom Hull, D. B. Sivyer, David J. Pearce, John K. Pinnegar, Martin Sayer, Andrew O.M. Mogg, Elaine Azzopardi, Steve Gontarek, Kieran Hyder
Software Mentions: 2
Published: over 10 years ago

10.5334/jors.243

A Figure One Web Tool for Visualization of Experimental Designs
Cited by: 1
Author(s): Foo Cheung
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers13174295

Diagnostic and Prognostic Performance of Liquid Biopsy-Derived Exosomal MicroRNAs in Thyroid Cancer Patients: A Systematic Review and Meta-Analysis
Cited by: 11
Author(s): Eman A. Toraih, Rami M. Elshazli, Lily N. Trinh, Mohammad Hussein, Abdallah A Attia, Emmanuelle Ruiz, Mourad Zerfaoui, Manal S. Fawzy, Emad Kandil
Software Mentions: 2
Published: about 5 years ago

10.3390/s21082672

Comparison of Self-Reported and Device-Based Measured Physical Activity Using Measures of Stability, Reliability, and Validity in Adults and Children
Cited by: 16
Author(s): Janis Fiedler, Tobias Eckert, Alexander Burchartz, Alexander Wöll, Kathrin Wunsch
Software Mentions: 2
Published: over 5 years ago

10.3390/s21134492

Internal Consistency of Sway Measures via Embedded Head-Mounted Accelerometers: Implications for Neuromotor Investigations
Cited by: 0
Author(s): Andrew P. Lapointe, Jessica N. Ritchie, Rachel V. Vitali, Joel S Burma, Ateyeh Soroush, Ibukunoluwa K. Oni, J. Lawrence Dunn
Software Mentions: 2
Published: over 5 years ago

10.3390/s21186319

A New Approach to Predicting Cryptocurrency Returns Based on the Gold Prices with Support Vector Machines during the COVID-19 Pandemic Using Sensor-Related Data
Cited by: 22
Author(s): Esam Mahdi, Víctor Leiva, Saed Mara'Beh, Carlos Martín-Barreiro
Software Mentions: 2
Published: about 5 years ago

10.1038/srep31857

High-fat diet disrupts metabolism in two generations of rats in a parent-of-origin specific manner
Cited by: 35
Author(s): Thomas K. Chambers, Michael D. Morgan, Andreas Heger, Richard M. Sharpe, Amanda J. Drake
Software Mentions: 2
Published: about 10 years ago

10.1038/srep32027

Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients
Cited by: 12
Author(s): Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Anita M A C Trapman-Jansen, Renée Foekens, Maxime P. Look, Marcel Smid, Carolien H.M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0158528

Impaired Granuloma Formation in Sepsis: Impact of Monocytopenia
Cited by: 5
Author(s): Julie Alingrin, Benjamin Coiffard, Julien Textoris, P. Bélénotti, Aurélie Daumas, Marc Léone, Jean‐Louis Mège
Software Mentions: 2
Published: over 10 years ago

10.1038/s41392-021-00688-z

Spontaneous apoptosis of cells in therapeutic stem cell preparation exert immunomodulatory effects through release of phosphatidylserine
Cited by: 17
Author(s): Xuemei He, Weiqi Hong, Jingyun Yang, Lei Hong, Tianqi Lu, He Cai, Zhenfei Bi, Xiangyu Pan, Yu Liu, Lunzhi Dai, Wei Wang, Canhua Huang, Hongxin Deng, Xiawei Wei
Software Mentions: 2
Published: over 5 years ago

10.1038/srep32598

Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Cited by: 2
Author(s): Xu Zhang, Zhilin Qu, Bing Su
Software Mentions: 2
Published: about 10 years ago

10.1186/s13395-021-00260-x

Dynamics of myogenic differentiation using a novel Myogenin knock-in reporter mouse
Cited by: 9
Author(s): Maria Benavente-Diaz, Glenda Comai, Daniela Di Girolamo, Francina Langa, Shahragim Tajbakhsh
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2020.571479

Optimized OPA1 Isoforms 1 and 7 Provide Therapeutic Benefit in Models of Mitochondrial Dysfunction
Cited by: 9
Author(s): Daniel Maloney, Naomi Chadderton, Sophia Millington‐Ward, Arpad Palfi, Ciara Shortall, James J. O’Byrne, Lorraine Cassidy, David Keegan, Peter Humphries, Paul F. Kenna, G. Jane Farrar
Software Mentions: 2
Published: almost 6 years ago

10.1093/scan/nsab004

Vicarious praise and pain: parental neural responses to social feedback about their adolescent child
Cited by: 7
Author(s): Lisanne A.E.M. van Houtum, Mirjam C M Wever, Loes Janssen, Charlotte C. van Schie, Geert‐Jan Will, Marieke S. Tollenaar, Bernet M. Elzinga
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13061377

The Implementation of DNA Methylation Profiling into a Multistep Diagnostic Process in Pediatric Neuropathology: A 2-Year Real-World Experience by the French Neuropathology Network
Cited by: 9
Author(s): Mélanie Pagès, Emmanuelle Uro‐Coste, Carole Colin, David Meyronet, Guillaume Gauchotte, Claude‐Alain Maurage, Audrey Rousseau, Catherine Godfraind, Karima Mokhtari, Karen Silva, Dominique Figarella‐Branger, Pascale Varlet
Software Mentions: 2
Published: over 5 years ago

10.1186/1751-0473-9-23

plot2groups: an R package to plot scatter points for two groups of values
Cited by: 1
Author(s): Yong Xu, Fuquan Zhang, Guoqiang Wang, Hongbao Cao, Cheng Zhang, Yin Yao Shugart
Software Mentions: 2
Published: almost 12 years ago

10.3390/sports9080111

Physical and Anthropometric Characteristics Do Not Differ According to Birth Year Quartile in High-Level Junior Australian Football Players
Cited by: 1
Author(s): Paul Larkin, Carl T. Woods, Jade Alexandra Ziems Haycraft, David B. Pyne
Software Mentions: 2
Published: about 5 years ago

10.1186/2193-1801-3-431

STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface
Cited by: 294
Author(s): Ramesh Ramasamy, R. Sumathy, B. B. Bindroo, V. Girish Naik
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2021.599664

Compositional Differences in the Oral Microbiome of E-cigarette Users
Cited by: 16
Author(s): Jessica Chopyk, C.M. Bojanowski, John H. Shin, A. Moshensky, Ana Lucía Fuentes, Saniya S Bonde, Dagni Chuki, David T. Pride, Laura E. Crotty Alexander
Software Mentions: 2
Published: over 5 years ago

10.1186/s40064-016-3681-4

Impact of nickel mining in New Caledonia assessed by compositional data analysis of lichens
Cited by: 13
Author(s): Camille Pasquet, Pauline Le Monier, Fabrice Monna, Christophe Durlet, Benjamin Brigaud, R. Losno, Carmela Château, Christine Laporte-Magoni, Peggy Gunkel-Grillon
Software Mentions: 2
Published: almost 10 years ago

10.3390/cancers13061397

Mutations Associated with No Durable Clinical Benefit to Immune Checkpoint Blockade in Non-S-Cell Lung Cancer
Cited by: 8
Author(s): Guangsheng Zhu, Dian Ren, Xi Liu, Ruifeng Shi, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade de Mello, Jun Chen, Song Xu
Software Mentions: 2
Published: over 5 years ago

10.1172/JCI128865

Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization
Cited by: 33
Author(s): Simon P. Jochems, Karin de Ruiter, Carla Solórzano, Astrid Voskamp, Elena Mitsi, Elissavet Nikolaou, Beatriz F. Carniel, Sherin Pojar, Esther L. German, Jesús Reiné, Alessandra Soares‐Schanoski, Helen Hill, Rachel Robinson, Angela Hyder-Wright, Caroline M. Weight, Pascal F. Durrenberger, Robert S. Heyderman, Stephen B. Gordon, Hermelijn H. Smits, Britta C. Urban, Jamie Rylance, Andrea Collins, Mark D. Wilkie, L Lazarova, Samuel Leong, Maria Yazdanbakhsh, Daniela M. Ferreira
Software Mentions: 2
Published: about 7 years ago

10.1186/scrt535

Loss of non-coding RNA expression from the DLK1-DIO3 imprinted locus correlates with reduced neural differentiation potential in human embryonic stem cell lines
Cited by: 106
Author(s): Chu Fan Mo, Fang Wu, Kang-Yu Tai, Wei Chun Chang, Kai Wei Chang, Hung‐Chi Kuo, Hong Nerng Ho, H.-F. Chen, Shau-Ping Lin
Software Mentions: 2
Published: almost 12 years ago

10.1111/pbi.12724

A reconfigured Kennedy pathway which promotes efficient accumulation of medium‐chain fatty acids in leaf oils
Cited by: 29
Author(s): Kyle B. Reynolds, Matthew C. Taylor, Darren Cullerne, Christopher L. Blanchard, Craig C. Wood, Surinder Singh, James R. Petrie
Software Mentions: 2
Published: over 9 years ago

10.1186/s13287-019-1270-5

The long non-coding RNA Snhg3 is essential for mouse embryonic stem cell self-renewal and pluripotency
Cited by: 16
Author(s): Weisi Lu, Jianping Yu, Fang Shi, Jianing Zhang, Rui Huang, Shanshan Yin, Zhou Songyang, Junjiu Huang
Software Mentions: 2
Published: over 7 years ago

10.1186/s13287-020-1580-7

Exosomal microRNA-144 from bone marrow-derived mesenchymal stem cells inhibits the progression of non-small cell lung cancer by targeting CCNE1 and CCNE2
Cited by: 41
Author(s): Yuan Liu, Dalin Zhang, Linlin Li, Xin Tian, Yuwei Zhao, Rui Ma, Jie Du
Software Mentions: 2
Published: over 6 years ago

10.1186/s13287-020-01641-7

Chemical-defined medium supporting the expansion of human mesenchymal stem cells
Cited by: 12
Author(s): Jianyong Xu, Wei Lian, Jieting Chen, Wenlei Li, Lingyun Li, Zhong Huang
Software Mentions: 2
Published: over 6 years ago

10.1186/s13287-021-02244-6

Exosomes from human umbilical cord mesenchymal stem cells attenuate the inflammation of severe steroid-resistant asthma by reshaping macrophage polarization
Cited by: 36
Author(s): Bing Dong, Chao Wang, Jing Zhang, Jinrong Zhang, Yinuo Gu, Xiaoping Guo, Xu Zuo, Pan He, Alan Hsu, Guoqiang Wang, Fang Wang
Software Mentions: 2
Published: over 5 years ago

10.1016/j.heliyon.2021.e07111

Sociodemographic factors and early marriage among women in Bangladesh, Ghana and Iraq: An illustration from Multiple Indicator Cluster Survey
Cited by: 16
Author(s): Ahmed Abdus Saleh Saleheen, Sharmin Afrin, Samia Kabir, Md. Jakaria Habib, Maliha Afroj Zinnia, Md. Ismail Hossain, Iqramul Haq, Ashis Talukder
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm8010111

Colorectal Cancer Prognosis Is Not Associated with BRAF and KRAS Mutations-A STROBE Compliant Study
Cited by: 12
Author(s): Joon Hyop Lee, Ji-Young Ahn, Won Seo Park, Eun Kyung Choe, Eun Young Kim, Rumi Shin, Seung Chul Heo, Sua Jung, Kwangsoo Kim, Young Jun Chai, Han‐Jung Chae
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13643-020-01376-9

Locating unregistered and unreported data for use in a social science systematic review and meta-analysis
Cited by: 7
Author(s): Joshua R. Polanin, Dorothy L. Espelage, Jennifer K. Grotpeter, Alberto Valido, Katherine M. Ingram, Cagil Torgal, America El Sheikh, Luz E. Robinson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0153631

The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii
Cited by: 36
Author(s): Stefano Bettinazzi, Federico Plazzi, Marco Passamonti
Software Mentions: 2
Published: over 10 years ago

10.1007/s00122-019-03425-x

Association genetics of bunch weight and its component traits in East African highland banana (Musa spp. AAA group)
Cited by: 13
Author(s): Moses Nyine, Brigitte Uwimana, Violet Akech, Allan Brown, Rodomiro Ortíz, Jaroslav Doležel, J. Lorenzen, Rony Swennen
Software Mentions: 2
Published: about 7 years ago

10.1007/s00122-019-03503-0

Exome sequencing of bulked segregants identified a novel TaMKK3-A allele linked to the wheat ERA8 ABA-hypersensitive germination phenotype
Cited by: 14
Author(s): Shantel A. Martinez, Oluwayesi Shorinola, Samantha Conselman, Deven R. See, Daniel Z. Skinner, Cristóbal Uauy, Camille M. Steber
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.01189-20

Tumble Suppression Is a Conserved Feature of Swarming Motility
Cited by: 11
Author(s): Jonathan D. Partridge, Nguyen T. Q. Nhu, Y. Dufour, Rasika M. Harshey
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0191720

Environmental DNA (eDNA): A tool for quantifying the abundant but elusive round goby (Neogobius melanostomus)
Cited by: 65
Author(s): Meredith B. Nevers, Muruleedhara N. Byappanahalli, Charles Morris, Dawn A. Shively, Katarzyna Przybyla‐Kelly, Ashley M. Spoljaric, Joshua Dickey, Edward F. Roseman
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0186901

Adaptation to dislodgement risk on wave-swept rocky shores in the snail Littorina saxatilis
Cited by: 32
Author(s): Guénolé Le Pennec, Roger K. Butlin, Per R. Jonsson, Ann I. Larsson, Jessica Lindborg, Erik Bergström, Anja M. Westram, Kerstin Johannesson
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0172132

Salient object changes influence overt attentional prioritization and object-based targeting in natural scenes
Cited by: 10
Author(s): Nicola Anderson, Mieke Donk
Software Mentions: 2
Published: over 9 years ago

10.1128/mBio.00814-20

Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes
Cited by: 4
Author(s): Laura Bricio-Moreno, Chrispin Chaguza, Reham Yahya, Rebecca K. Shears, Jennifer Cornick, Karsten Hokamp, Marie Yang, Daniel R. Neill, Neil French, Jay C. D. Hinton, Dean Everett, Aras Kadioglu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0127455

Pyrosequencing Characterization of the Microbiota from Atlantic Intertidal Marine Sponges Reveals High Microbial Diversity and the Lack of Co-Occurrence Patterns
Cited by: 29
Author(s): Anoop Alex, Agostinho Antunes
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0234778

Photodepletion with 2-Se-Cl prevents lethal graft-versus-host disease while preserving antitumor immunity
Cited by: 1
Author(s): Jason M. Grayson, Mildred D. Perez, Rebecca Blevins, Benjamin N. Coe, Michael R. Detty, Zachariah A. McIver
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0208159

Physical therapists’ perspectives on using contextual factors in clinical practice: Findings from an Italian national survey
Cited by: 27
Author(s): Giacomo Rossettini, Alvisa Palese, Tommaso Geri, Mirta Fiorio, Luana Colloca, Marco Testa
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0203286

Transcriptomic insights on the virulence-controlling CsrA, BadR, RpoN, and RpoS regulatory networks in the Lyme disease spirochete
Cited by: 22
Author(s): William K. Arnold, Christina R. Savage, Kathryn G. Lethbridge, Trever C. Smith, Catherine A. Brissette, J. Seshu, Brian Stevenson
Software Mentions: 2
Published: about 8 years ago

10.1128/mBio.03338-20

Cooperation between Different CRISPR-Cas Types Enables Adaptation in an RNA-Targeting System
Cited by: 24
Author(s): Ville Hoikkala, Janne J. Ravantti, Cesar Díez‐Villaseñor, Marja Tiirola, Rachel A. Conrad, Mark J. McBride, Sylvain Moineau, Lotta‐Riina Sundberg
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0191853

Ezh2 does not mediate retinal ganglion cell homeostasis or their susceptibility to injury
Cited by: 10
Author(s): Lin Cheng, Lucy Wong, Naihong Yan, Richard C. Han, Honghua Yu, Chin-Lin Guo, Khulan Batsuuri, Aniket Zinzuwadia, Ryan Guan, Kin‐Sang Cho, Dong Feng Chen
Software Mentions: 2
Published: over 8 years ago

10.1128/mBio.00927-21

Experimental-Evolution-Driven Identification of Arabidopsis Rhizosphere Competence Genes in Pseudomonas protegens
Cited by: 13
Author(s): Erqin Li, Hao Zhang, Henan Jiang, Corné M. J. Pieterse, Alexandre Jousset, Peter A. H. M. Bakker, Ronnie de Jonge
Software Mentions: 2
Published: over 5 years ago

10.3897/phytokeys.176.63378

Notes on Allium section Rhizirideum (Amaryllidaceae) in South Korea and northeastern China: with a new species from Ulleungdo Island
Cited by: 7
Author(s): Ju Eun Jang, Jong-Soo Park, Ji-Young Jung, Dong-Kap Kim, Sungyu Yang, Hyeok Jae Choi
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.00873-21

Nutrient Loading and Viral Memory Drive Accumulation of Restriction Modification Systems in Bloom-Forming Cyanobacteria
Cited by: 4
Author(s): Spiridon E. Papoulis, Steven W. Wilhelm, David Talmy, Erik R. Zinser
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm8101723

Monitoring and Determining Mitochondrial Network Parameters in Live Lung Cancer Cells
Cited by: 6
Author(s): Tamara Mirzapoiazova, Haiqing Li, Anusha Nathan, Saumya Srivstava, Mohd W. Nasser, Frances E. Lennon, Brian Armstrong, Isa Mambetsariev, Peiguo Chu, Srisairam Achuthan, Surinder K. Batra, Prakash Kulkarni, Ravi Salgia
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.9859

UCN-01 enhances cytotoxicity of irinotecan in colorectal cancer stem-like cells by impairing DNA damage response
Cited by: 16
Author(s): Michele Signore, Mariachiara Buccarelli, Emanuela Pilozzi, Gabriele De Luca, Marianna Cappellari, Maurizio Fanciulli, Frauke Goeman, Elisa Melucci, Mauro Biffoni, Lucia Ricci‐Vitiani
Software Mentions: 2
Published: over 10 years ago

10.1007/s00424-021-02544-z

Keeping the ageing brain wired: a role for purine signalling in regulating cellular metabolism in oligodendrocyte progenitors
Cited by: 19
Author(s): Andrea Rivera, Irene Chacon-De-La-Rocha, Francesca Pieropan, Maria Papanikolau, Kasum Azim, Arthur M. Butt
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.54309

Caenorhabditis elegans nuclear RNAi factor SET-32 deposits the transgenerational histone modification, H3K23me3
Cited by: 28
Author(s): Lianna Schwartz-Orbach, Chenzhen Zhang, Simone Sidoli, Richa Amin, Diljeet Kaur, Anna Zhebrun, Julie Zhouli Ni, Sam Guoping Gu
Software Mentions: 2
Published: about 6 years ago

10.1038/srep38302

Catalysis and Structure of Zebrafish Urate Oxidase Provide Insights into the Origin of Hyperuricemia in Hominoids
Cited by: 20
Author(s): Marialaura Marchetti, Anastasia Liuzzi, Beatrice Fermi, Romina Corsini, Claudia Folli, Valentina Speranzini, Francesco Gandolfi, Stefano Bettati, Luca Ronda, Laura Cendron, Rodolfo Berni, Giuseppe Zanotti, Riccardo Percudani
Software Mentions: 2
Published: almost 10 years ago

10.1038/hortres.2017.22

Transcriptomic and metabolomic analyses of cucumber fruit peels reveal a developmental increase in terpenoid glycosides associated with age-related resistance to Phytophthora capsici
Cited by: 40
Author(s): Ben N. Mansfeld, Marivi Colle, Yunyan Kang, A. Daniel Jones, Rebecca Grumet
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0226225

Spatial genetic structure and diversity of natural populations of Aesculus hippocastanum L. in Greece
Cited by: 9
Author(s): Łukasz Walas, Petros Ganatsas, Grzegorz Iszkuło, Peter A. Thomas, Monika Dering
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0209124

Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts
Cited by: 20
Author(s): Stijn F. L. Mertens, Brigida Gallone, Jan Steensels, Beatriz Herrera‐Malaver, Jeroen Cortebeek, Robbe Nolmans, Veerle Saels, Valmik K. Vyas
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12974-019-1601-6

Cytokine and immune cell profiling in the cerebrospinal fluid of patients with neuro-inflammatory diseases
Cited by: 84
Author(s): Gildas Lepennetier, Zsuzsanna Hracskó, Marina Unger, Martijn van Griensven, Verena Grummel, Markus Krumbholz, Achim Berthele, Bernhard Hemmer, Markus C. Kowarik
Software Mentions: 2
Published: almost 7 years ago

10.3389/fneur.2018.00356

Guiding Device for Precision Grafting of Peripheral Nerves in Complete Thoracic Spinal Cord Injury: Design and Sizing for Clinical Trial
Cited by: 1
Author(s): Arvid Frostell, Per Mattsson, Mikael Svensson
Software Mentions: 2
Published: over 8 years ago

10.1128/mSphere.00248-19

High-Throughput Sequence Analysis of Peripheral T-Cell Lymphomas Indicates Subtype-Specific Viral Gene Expression Patterns and Immune Cell Microenvironments
Cited by: 12
Author(s): Hani Nakhoul, Zhen Lin, Xia Wang, Claire Roberts, Yan Dong, Erik K. Flemington
Software Mentions: 2
Published: about 7 years ago

10.1038/srep40519

Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes
Cited by: 32
Author(s): Erwan Delrieu‐Trottin, Stefano Mona, Jeffrey Maynard, Valentina Neglia, Michel Veuille, Serge Planes
Software Mentions: 2
Published: almost 10 years ago

10.1128/mSphere.00761-19

Dominance of Gas-Eating, Biofilm-Forming Methylobacterium Species in the Evaporator Cores of Automobile Air-Conditioning Systems
Cited by: 2
Author(s): Chulwoo Park, Hye Su Jung, Tae Sun Park, Che Ok Jeon, Woojun Park
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.02003

Genome-Based Taxonomic Classification of Bacteroidetes
Cited by: 450
Author(s): Richard L. Hahnke, Jan P. Meier‐Kolthoff, Marina García-López, Supratim Mukherjee, Marcel Huntemann, Natalia Ivanova, Tanja Woyke, Nikos C. Kyrpides, Hans‐Peter Klenk, Markus Göker
Software Mentions: 2
Published: almost 10 years ago

10.3390/jcm9061741

Implications of Hereditary Origin on the Immune Phenotype of Mismatch Repair-Deficient Cancers: Systematic Literature Review
Cited by: 21
Author(s): Lena Bohaumilitzky, Magnus von Knebel Doeberitz, Matthias Kloor, Aysel Ahadova
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00151-20

Pseudohyphal Growth of the Emerging Pathogen Candida auris Is Triggered by Genotoxic Stress through the S Phase Checkpoint
Cited by: 42
Author(s): Gustavo Bravo Ruiz, Zoe K. Ross, Neil A. R. Gow, Alexander Lorenz
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0248730

Variability in digestive and respiratory tract Ace2 expression is associated with the microbiome
Cited by: 26
Author(s): Sean T. Koester, Naisi Li, Daniel M. Lachance, Norma M. Morella, Neelendu Dey
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00048-20

Observational Cohort Study of Oral Mycobiome and Interkingdom Interactions over the Course of Induction Therapy for Leukemia
Cited by: 17
Author(s): Sarah N. Robinson, Christine B. Peterson, Pranoti Sahasrabhojane, Nadim J. Ajami, Samuel A. Shelburne, Dimitrios P. Kontoyiannis, Jessica Galloway-Peña
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0109532

Burrows of the Semi-Terrestrial Crab Ucides cordatus Enhance CO2 Release in a North Brazilian Mangrove Forest
Cited by: 38
Author(s): Nathalie Pülmanns, Karen Diele, Ulf Mehlig, Inga Nordhaus
Software Mentions: 2
Published: about 12 years ago

10.1038/srep41748

Genome-wide association study for performance traits in chickens using genotype by sequencing approach
Cited by: 23
Author(s): Fábio Pértille, Gabriel Costa Monteiro Moreira, Ricardo Zanella, José de Ribamar da Silva Nunes, Clarissa Boschiero, Gregorí Alberto Rovadoscki, Gérson Barreto Mourão, Mônica Corrêa Ledur, Luiz Lehmann Coutinho
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.5507

Assessment of genomic changes in a CRISPR/Cas9 Phaeodactylum tricornutum mutant through whole genome resequencing
Cited by: 17
Author(s): Monia Teresa Russo, Riccardo Aiese Cigliano, Walter Sanseverino, Maria Immacolata Ferrante
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0195771

High-resolution temporal and regional mapping of MAPT expression and splicing in human brain development
Cited by: 55
Author(s): Marco M. Hefti, Kurt Farrell, SoongHo Kim, Kathryn R. Bowles, Mary Fowkes, Towfique Raj, John F. Crary
Software Mentions: 2
Published: over 8 years ago

10.1038/srep43747

The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania
Cited by: 33
Author(s): Simone Coughlan, Peter O. Mulhair, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.01014-20

TsrA Regulates Virulence and Intestinal Colonization in Vibrio cholerae
Cited by: 1
Author(s): Cory D. DuPai, Ashley L. Cunningham, Aaron R. Conrado, Claus O. Wilke, Bryan William Davies
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0253434

Hospital admission for type 2 diabetes mellitus under the Universal Coverage Scheme in Thailand: A time- and geographical-trend analysis, 2009–2016
Cited by: 7
Author(s): Tanapat Laowahutanon, Haruyo Nakamura, Hisateru Tachimori, Shuhei Nomura, Tippawan Liabsuetrakul, Apiradee Lim, Petch Rawdaree, Netnapis Suchonwanich, Hiroyuki Yamamoto, Aya Ishizuka, Kenji Shibuya, Hiroaki Matsubara, Virasakdi Chongsuvivatwong
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0231178

Seasonal and latitudinal variations in sea ice algae deposition in the Northern Bering and Chukchi Seas determined by algal biomarkers
Cited by: 25
Author(s): Chelsea Wegner Koch, Lee W. Cooper, Catherine Lalande, Thomas A. Brown, Karen E. Frey, Jacqueline M. Grebmeier
Software Mentions: 2
Published: over 6 years ago

10.1038/srep43261

Prolonged high-fat diet induces gradual and fat depot-specific DNA methylation changes in adult mice
Cited by: 36
Author(s): Ramona A J Zwamborn, Roderick C. Slieker, Petra Mulder, Inge Zoetemelk, Lars Verschuren, H. Eka D. Suchiman, Karin Toet, S. Droog, P. Eline Slagboom, Teake Kooistra, Robert Kleemann, Bastiaan T. Heijmans
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: about 6 years ago

10.3389/fneur.2020.499910

Differences in Advanced Magnetic Resonance Imaging in MOG-IgG and AQP4-IgG Seropositive Neuromyelitis Optica Spectrum Disorders: A Comparative Study
Cited by: 12
Author(s): Felix Schmidt, Claudia Chien, Joseph Kuchling, Judith Bellmann‐Strobl, Klemens Ruprecht, Nadja Siebert, Susanna Asseyer, Sven Jarius, Alexander U. Brandt, Michael Scheel, Friedemann Paul
Software Mentions: 2
Published: about 6 years ago

10.1128/mSphere.01160-20

Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils
Cited by: 11
Author(s): Carolyn R. Cornell, Ya Ping Zhang, Joy D. Van Nostrand, Pradeep Wagle, Xiangming Xiao, Jizhong Zhou
Software Mentions: 2
Published: over 5 years ago

10.1038/srep45365

Epigenome mapping highlights chromatin-mediated gene regulation in the protozoan parasite Trichomonas vaginalis
Cited by: 12
Author(s): Min Song, Mi-Kyoung Kim, Yun Young Choi, Myung‐hee Yi, Juri Kim, Soon‐Jung Park, Tai Soon Yong, Hyoung‐Pyo Kim
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00588-21

A Novel SXT/R391 Integrative and Conjugative Element Carries Two Copies of the bla NDM-1 Gene in Proteus mirabilis
Cited by: 19
Author(s): Jintao He, Long Sun, Linghong Zhang, Sebastian Leptihn, Yunsong Yu, Xiaoting Hua
Software Mentions: 2
Published: about 5 years ago

10.1007/s00415-019-09672-8

Alien limb in the corticobasal syndrome: phenomenological characteristics and relationship to apraxia
Cited by: 9
Author(s): David Lewis-Smith, Noham Wolpe, Boyd Ghosh, James B. Rowe
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00052-16

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Cited by: 186
Author(s): Aaron M. Walsh, Fiona Crispie, Kieran N. Kilcawley, Órla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 2
Published: about 10 years ago

10.1038/s41438-020-00395-w

Morphoagronomic characterization and whole-genome resequencing of eight highly diverse wild and weedy S. pimpinellifolium and S. lycopersicum var. cerasiforme accessions used for the first interspecific tomato MAGIC population
Cited by: 8
Author(s): Pietro Gramazio, Leandro Pereira-Dias, Santiago Vilanova, Jaime Prohens, Salvador Soler, Javier Esteras, Alfonso Garmendia, María José Díez
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0252924

The drug development pipeline for glioblastoma—A cross sectional assessment of the FDA Orphan Drug Product designation database
Cited by: 4
Author(s): Pascal Johann, Dominic Lenz, Markus Ries
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00061-17

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features
Cited by: 74
Author(s): Sander Wuyts, Stijn Wittouck, Ilke De Boeck, Camille Nina Allonsius, Edoardo Pasolli, Nicola Segata, Sarah Lebeer
Software Mentions: 2
Published: about 9 years ago

10.1128/mSystems.00096-17

Increased Biosynthetic Gene Dosage in a Genome-Reduced Defensive Bacterial Symbiont
Cited by: 46
Author(s): Juan Lopera, Ian Miller, Kerry L. McPhail, Jason C. Kwan
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0226111

Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades
Cited by: 21
Author(s): Hyunmin Koo, Joseph A. Hakim, David K. Crossman, Elliot J. Lefkowitz, Casey D. Morrow
Software Mentions: 2
Published: almost 7 years ago

10.3389/fneur.2020.00392

Functional Ambulation Profile (FAP) Score as a Potential Marker of Gait Analysis in Myotonic Dystrophy Type 1
Cited by: 3
Author(s): Sun‐Young Kim, Yong-Hyun Lim, Kyunghun Kang, Donghwi Park, Ho‐Won Lee, Jin-Sung Park
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0148465

Transcriptomics Modeling of the Late-Gestation Fetal Pituitary Response to Transient Hypoxia
Cited by: 6
Author(s): Charles E. Wood, Eileen I. Chang, Elaine M. Richards, María Belén Rabaglino, Maureen Keller‐Wood
Software Mentions: 2
Published: over 10 years ago

10.1128/mSystems.00046-18

Combinatorial Approaches to Viral Attenuation
Cited by: 4
Author(s): Matthew L. Paff, Benjamin R. Jack, Bartram L Smith, James J. Bull, Claus O. Wilke
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0186290

Dynamic microbial populations along the Cuyahoga River
Cited by: 11
Author(s): Matthew Cannon, Joseph M. Craine, James Hester, Amanda Shalkhauser, E. Ricky Chan, Kyle Logue, Scott T. Small, David Serre
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0222503

Genetic diversity and population structure of four Chinese rabbit breeds
Cited by: 13
Author(s): Anyong Ren, Kun Du, Xianbo Jia, Rui Yang, Jie Wang, Shiyi Chen, Songjia Lai
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2021.670070

ImmuCellDB: An Indicative Database of Immune Cell Composition From Different Tissues and Disease Conditions in Mouse and Human
Cited by: 2
Author(s): Ziyi Chen, Na Han, Aiping Wu
Software Mentions: 2
Published: about 5 years ago

10.1038/srep46148

An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort
Cited by: 6
Author(s): Yingleong Chan, Michael Tung, Alexander S. Garruss, Sarah W. Zaranek, Ying Chan, Jeantine E. Lunshof, Alexander Wait Zaranek, Madeleine Ball, Michael F. Chou, Elaine T. Lim, George M. Church
Software Mentions: 2
Published: over 9 years ago

10.1152/jn.00375.2020

Isoflurane anesthesia disrupts the cortical metabolome
Cited by: 5
Author(s): Aaron G. Baer, Allen K. Bourdon, Joshua Price, Shawn R. Campagna, Daniel Jacobson, Helen A. Baghdoyan, Ralph Lydic
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00261-19

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults
Cited by: 193
Author(s): Jacobo de la Cuesta-Zuluaga, Scott T. Kelley, Yingfeng Chen, Juan S. Escobar, Noel T. Mueller, Ruth E. Ley, Daniel McDonald, Shi Huang, Austin D. Swafford, Rob Knight, Varykina G. Thackray
Software Mentions: 2
Published: about 7 years ago

10.3390/jcm9082515

Effects of Time-Interval since Blood Draw and of Anticoagulation on Platelet Testing (Count, Indices and Impedance Aggregometry): A Systematic Study with Blood from Healthy Volunteers
Cited by: 15
Author(s): Michaël Hardy, Sarah Lessire, Sultan Kasikci, Justine Baudar, Maïté Guldenpfennig, Adrien Collard, Jean‐Michel Dogné, Bernard Châtelain, Hugues Jacqmin, Thomas Lecompte, François Mullier
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0239998

Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species
Cited by: 10
Author(s): Tyler C. Helmann, Adam M. Deutschbauer, Steven E. Lindow
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00320-19

Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
Cited by: 26
Author(s): Adrienne B. Narrowe, Mikayla A. Borton, David Hoyt, Garrett J. Smith, Rebecca A. Daly, Jordan C. Angle, Elizabeth K. Eder, Allison R. Wong, Richard A. Wolfe, Alexandra Pappas, Gil Bohrer, Christopher S. Miller, Kelly Wrighton
Software Mentions: 2
Published: almost 7 years ago

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