cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12863-020-00935-2

Climate stress resistance in male Queensland fruit fly varies among populations of diverse geographic origins and changes during domestication
Cited by: 7
Author(s): Ángel-David Popa-Báez, Siu Fai Lee, Heng Lin Yeap, Surendra Prasad, Michele Schiffer, Roslyn Mourant, Cynthia Castro-Vargas, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00555-20

Temperature-Induced Annual Variation in Microbial Community Changes and Resulting Metabolome Shifts in a Controlled Fermentation System
Cited by: 40
Author(s): Shilei Wang, Wu Xiong, Yuqiao Wang, Yao Nie, Qun Wu, Yan Xu, Stefan Geisen
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00517-20

Geothermal Gases Shape the Microbial Community of the Volcanic Soil of Pantelleria, Italy
Cited by: 12
Author(s): Nunzia Picone, Carmen Hogendoorn, Geert Cremers, Lianna Poghosyan, Arjan Pol, Theo A. van Alen, Antonina Lisa Gagliano, W. D’Alessandro, Paola Quatrini, Mike S. M. Jetten, Huub J. M. Op den Camp, Tom Berben
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0488-2

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
Cited by: 159
Author(s): Xiaobo Liu, Meng Li, Cindy J. Castelle, Alexander J. Probst, Zhichao Zhou, Jie Pan, Yang Liu, Jillian F. Banfield, Ji‐Dong Gu
Software Mentions: 2
Published: about 8 years ago

10.1128/mSystems.00542-20

Phages versus Antibiotics To Treat Infected Diabetic Wounds in a Mouse Model: a Microbiological and Microbiotic Evaluation
Cited by: 12
Author(s): Jean‐François Huon, Emmanuel Montassier, Anne-Gaëlle Leroy, Matthieu Grégoire, Marie-Anne Vibet, Jocelyne Caillon, David Boutoille, Dominique Navas
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-021-01075-0

Holobiont nitrogen control and its potential for eutrophication resistance in an obligate photosymbiotic jellyfish
Cited by: 11
Author(s): Till Röthig, Giulia Puntin, Jane C. Y. Wong, Alfred Burian, Wendy McLeod, David M. Baker
Software Mentions: 2
Published: about 5 years ago

10.1264/jsme2.ME19017

Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs
Cited by: 35
Author(s): Lewis M. Ward, Airi Idei, Mayuko Nakagawa, Yuichiro Ueno, Woodward W. Fischer, Shawn E. McGlynn
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.01222-20

A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community
Cited by: 13
Author(s): Susan Joseph, Joseph Aduse‐Opoku, Ahmed Hashim, Eveliina Hanski, Ricarda Streich, Sarah C. L. Knowles, Amy B. Pedersen, William Wade, Michael A. Curtis
Software Mentions: 2
Published: over 5 years ago

10.1186/s12934-020-01417-x

TAK-242 ameliorates DSS-induced colitis by regulating the gut microbiota and the JAK2/STAT3 signaling pathway
Cited by: 34
Author(s): Jiajia Wang, Guannan Zhu, Cheng Sun, Ke Xiong, Tingting Yao, Yuan Su, Fang Hou
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.103714

The impact of folate and vitamin B12 status on cognitive function and brain atrophy in healthy elderly and demented Austrians, a retrospective cohort study
Cited by: 5
Author(s): Jasmin Rabensteiner, Edith Hofer, Günter Fauler, Eva Fritz-Petrin, Thomas Benke, Peter Dal‐Bianco, Gerhard Ransmayr, Reinhold Schmidt, Markus Herrmann
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00049-21

Characterization of the Blood and Cerebrospinal Fluid Microbiome in Children with Bacterial Meningitis and Its Potential Correlation with Inflammation
Cited by: 9
Author(s): Huiping Liao, Yuchao Zhang, Wei Guo, Xi Wang, Hailong Wang, Haocheng Ye, Kai Wu, Yuhang Zhang, Lingyun Guo, Yong Zhu, Yongli Guo, Landian Hu, Gang Liu, Xiangyin Kong
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12934-017-0793-7

Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F420 autofluorescence
Cited by: 33
Author(s): Johannes Lambrecht, Nicolas Cichocki, Thomas Hübschmann, Christin Koch, Hauke Harms, Susann Müller
Software Mentions: 2
Published: over 8 years ago

10.1186/s12934-021-01513-6

Long-term efficacy and safety of monotherapy with a single fresh fecal microbiota transplant for recurrent active ulcerative colitis: a prospective randomized pilot study
Cited by: 26
Author(s): Fang Hou, Fang Lian, Xuejun Li, Chong‐Dao Lu, Yuan Su, Ke Xiong, Lijiu Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12863-021-00994-z

Development and validation of a 1 K sika deer (Cervus nippon) SNP Chip
Cited by: 4
Author(s): Huanhuan Fan, Tianjiao Wang, Li Yang, Huitao Liu, Yushen Dong, Ranran Zhang, Hongliang Wang, Liyuan Shang, Xiumei Xing
Software Mentions: 2
Published: almost 5 years ago

10.15698/mic2020.04.713

Stable and destabilized GFP reporters to monitor calcineurin activity in Saccharomyces cerevisiae
Cited by: 7
Author(s): Jutta Diessl, Arpita Nandy, Christina Schug, Lukas Habernig, Sabrina Büttner
Software Mentions: 2
Published: about 6 years ago

10.1111/1751-7915.12853

Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well
Cited by: 26
Author(s): Michiel H. in ‘t Zandt, Sabrina Beckmann, Ruud Rijkers, Mike S. M. Jetten, Mike Manefield, Cornelia U. Welte
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSystems.00606-21

Deciphering Symbiotic Interactions of “ Candidatus Aenigmarchaeota” with Inferred Horizontal Gene Transfers and Co-occurrence Networks
Cited by: 11
Author(s): Yuxian Li, Yang-Zhi Rao, Yanling Qi, Yan-Ni Qu, Ya-Ting Chen, Jian‐Yu Jiao, Wen‐Sheng Shu, Hongchen Jiang, Brian P. Hedlund, Zheng-Shuang Hua, Wenjun Li
Software Mentions: 2
Published: almost 5 years ago

10.18632/aging.102925

Alterations of hand sensorimotor function and cortical motor representations over the adult lifespan
Cited by: 6
Author(s): Melina Hehl, Stephan P. Swinnen, Koen Cuypers
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.103557

Inhibition of miRNA-152-3p enhances diabetic wound repair via upregulation of PTEN
Cited by: 14
Author(s): Xu Yan, Tao Yu, Lei He, Liu Ouyang, Yanzhen Qu, Junjie Zhou, Yu Han, Deyu Duan
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.mex.2019.02.016

Determine the prevalence of gestational diabetes in Ardakan and its related factors
Cited by: 0
Author(s): Ahmad Moradi, Hamid Reza Morovati, Amir Teimourpour, Shahrzad Nematollahi, Monireh Faghir Ganji
Software Mentions: 2
Published: over 7 years ago

10.1007/s00439-020-02132-8

Decoding a highly mixed Kazakh genome
Cited by: 4
Author(s): Madina Seidualy, Asta Blažytė, Sungwon Jeon, Youngjune Bhak, Yeonsu Jeon, Jung-Eun Kim, Anders Eriksson, Dan Bolser, Changhan Yoon, Andrea Manica, Semin Lee, Jong Bhak
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/2159460

Potential Molecular Mechanism of the NPPB Gene in Postischemic Heart Failure with and without T2DM
Cited by: 1
Author(s): Yao-Zong Guan, Rui-Xing Yin, Guo-Xiong Deng, Peng-Fei Zheng, Chunxiao Liu, Bi-Liu Wei
Software Mentions: 2
Published: almost 6 years ago

10.1007/s11306-018-1328-x

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects
Cited by: 18
Author(s): Parastoo Fazelzadeh, Roland W. J. Hangelbroek, Peter J. Joris, Casper G. Schalkwijk, Diederik Esser, Lydia A. Afman, Thomas Hankemeier, Doris M. Jacobs, Velitchka V. Mihaleva, Sander Kersten, John van Duynhoven, Mark V. Boekschoten
Software Mentions: 2
Published: over 8 years ago

10.1111/evo.13583

The appearance of mimetic Heliconius butterflies to predators and conspecifics
Cited by: 30
Author(s): Denise Dalbosco Dell’Aglio, Jolyon Troscianko, W. Owen McMillan, Martin Stevens, Chris D. Jiggins
Software Mentions: 2
Published: almost 8 years ago

10.1111/evo.13193

Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change
Cited by: 26
Author(s): Valerie J. Morley, Paul Turner
Software Mentions: 2
Published: over 9 years ago

10.1002/evl3.42

Horizontal gene cluster transfer increased hallucinogenic mushroom diversity
Cited by: 66
Author(s): Hannah T. Reynolds, Vinod Vijayakumar, Emile Gluck‐Thaler, Hailee Brynn Korotkin, P. Brandon Matheny, Jason C. Slot
Software Mentions: 2
Published: over 8 years ago

10.1002/humu.24053

Mutation prevalence tables for hereditary cancer derived from multigene panel testing
Cited by: 16
Author(s): Steven N. Hart, Eric C. Polley, Amal Yussuf, Siddhartha Yadav, David E. Goldgar, Chunling Hu, Holly LaDuca, Laura P. Smith, June Fujimoto, Shuwei Li, Fergus J. Couch, Jill S. Dolinsky
Software Mentions: 2
Published: almost 6 years ago

10.1007/s12110-016-9272-9

The Reproductive Ecology of Industrial Societies, Part II
Cited by: 32
Author(s): Gert Stulp, Rebecca Sear, Susan B. Schaffnit, Melinda Mills, Louise Barrett
Software Mentions: 2
Published: over 9 years ago

10.1002/evl3.83

Competitive species interactions constrain abiotic adaptation in a bacterial soil community
Cited by: 31
Author(s): James P. J. Hall, Ellie Harrison, Michael A. Brockhurst
Software Mentions: 2
Published: over 7 years ago

10.1002/evl3.220

Experimental evolution supports signatures of sexual selection in genomic divergence
Cited by: 11
Author(s): R. Axel W. Wiberg, Paris Veltsos, Rhonda R. Snook, Michael G. Ritchie
Software Mentions: 2
Published: about 5 years ago

10.12688/f1000research.27393.3

Towards establishing extracellular vesicle-associated RNAs as biomarkers for HER2+ breast cancer
Cited by: 2
Author(s): Colin L. Hisey, Petr Tomek, Yohanes Nursalim, Larry Chamley, Euphemia Leung
Software Mentions: 2
Published: about 5 years ago

10.1111/nyas.13587

In rural Gambia, do adolescents have increased nutritional vulnerability compared with adults?
Cited by: 5
Author(s): Simon Schoenbuchner, Sophie E. Moore, William Johnson, Mohammed Ngum, Bakary Sonko, Ann Prentice, Andrew M. Prentice, Kate A Ward
Software Mentions: 2
Published: over 8 years ago

10.1111/eva.13187

Sex‐ and time‐specific parental effects of warming on reproduction and offspring quality in a coral reef fish
Cited by: 12
Author(s): Rachel K. Spinks, Lucrezia C. Bonzi, Timothy Ravasi, Philip L. Munday
Software Mentions: 2
Published: over 5 years ago

10.1002/aps3.1207

EyeChrom and CCDBcurator: Visualizing chromosome count data from plants
Cited by: 10
Author(s): Rodrigo Rivero, Emily B. Sessa, Rosana Zenil‐Ferguson
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.12321.1

Second ISCB Latin American Student Council Symposium (LA-SCS) 2016
Cited by: 5
Author(s): Alexander Miguel Monzón, Marcia Anahí Hasenahuer, Estefanía Mancini, Nilson Da Rocha Coimbra, Fiorella Cravero, Javier Cáceres-Molina, César A. Ramírez‐Sarmiento, Nicolás Palopoli, Pieter Meysman, R. Gonzalo Parra
Software Mentions: 2
Published: almost 9 years ago

10.12688/f1000research.9022.1

ddpcr: an R package and web application for analysis of droplet digital PCR data
Cited by: 24
Author(s): Dean Attali, Roza Bidshahri, Charles A. Haynes, Jenny Bryan
Software Mentions: 2
Published: about 10 years ago

10.1111/eva.13081

Growing in the city: Urban evolutionary ecology of avian growth rates
Cited by: 27
Author(s): Michela Corsini, Eva Maria Schöll, Irene Di Lecce, Marion Chatelain, Anna Dubiec, Marta Szulkin
Software Mentions: 2
Published: almost 6 years ago

10.12688/f1000research.16409.2

gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2
Cited by: 59
Author(s): Jesper L.V. Mååg
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/9863714

Based on Network Pharmacology and RNA Sequencing Techniques to Explore the Molecular Mechanism of Huatan Jiangzhuo Decoction for Treating Hyperlipidemia
Cited by: 1
Author(s): Xiaowen Zhou, Zhenqian Yan, Yaxin Wang, Qi Ren, Xiaoqi Liu, Ge Fang, Bin Wang, Xiantao Li
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-019-6274-0

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Cited by: 10
Author(s): Matthew A. Nethery, Emily DeCrescenzo Henriksen, Katheryne V. Daughtry, Suzanne D. Johanningsmeier, Rodolphe Barrangou
Software Mentions: 2
Published: over 6 years ago

10.12688/f1000research.6055.3

A double blinded, placebo-controlled pilot study to examine reduction of CD34+/CD117+/CD133+ lymphoma progenitor cells and duration of remission induced by neoadjuvant valspodar in dogs with large B-cell lymphoma
Cited by: 0
Author(s): Daisuke Ito, Michael O. Childress, Nicola J. Mason, Amber Winter, Timothy O’Brien, Michael Henson, Antonella Borgatti, Mitzi Lewellen, Erika Krick, Janet Stewart, Sarah Lahrman, Bartek Rajwa, Milcah C. Scott, Davis Seelig, Joseph S. Koopmeiners, Stephan Ruetz, Jaime F. Modiano
Software Mentions: 2
Published: about 9 years ago

10.1155/2021/5557873

Overexpression of MAL2 Correlates with Immune Infiltration and Poor Prognosis in Breast Cancer
Cited by: 3
Author(s): Yue Zhong, Zhenjie Zhuang, Peiju Mo, Qi Shang, Min Lin, Jiaqian Gong, Jingmin Huang, Haiyan Mo, Mei Huang
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/8979713

Data Mining and Systematic Pharmacology to Reveal the Mechanisms of Traditional Chinese Medicine in Recurrent Respiratory Tract Infections’ Treatment
Cited by: 5
Author(s): Changyong Luo, He Yu, Tao Yang, Chen Bai, Bing He, Yurou Yan, Tiegang Liu, Junhong Wang, Xiaohong Gu
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo11080472

Metagenomic, Metabolomic, and Functional Evaluation of Kimchi Broth Treated with Light-Emitting Diodes (LEDs)
Cited by: 2
Author(s): Yeong Ji Oh, Ye-Rin Park, Jungil Hong, Do-Yup Lee
Software Mentions: 2
Published: almost 5 years ago

10.3390/metabo10120495

Single-Step Extraction Coupled with Targeted HILIC-MS/MS Approach for Comprehensive Analysis of Human Plasma Lipidome and Polar Metabolome
Cited by: 36
Author(s): Jéssica Medina, Vera van der Velpen, Tony Teav, Yann Guitton, Héctor Gallart-Ayala, Julijana Ivanišević
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-020-05417-5

The prediction for development of COVID-19 in global major epidemic areas through empirical trends in China by utilizing state transition matrix model
Cited by: 12
Author(s): Zheng Zhong, Ke Wu, Zhixian Yao, Xinyi Zheng, Junhua Zheng, Jian Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-015-1063-0

Analysis of cerebrospinal fluid protein concentrations of patients with cryptococcal meningitis treated with antifungal agents
Cited by: 6
Author(s): Lien‐Hung Huang, Hui Yang, Junyan Qu, Yanbin Liu, Chengliang Zhong, Guangmin Tang, Ying Liu, Yao Huang, Xiaoju Lv
Software Mentions: 2
Published: almost 11 years ago

10.12688/f1000research.26888.3

A new analysis approach for single nephron GFR in intravital microscopy of mice
Cited by: 4
Author(s): Friederike Kessel, Hannah Kröger, Michael Gerlach, Jan Sradnick, Florian Gembardt, Vladimir Todorov, Christian Hugo
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.102105

Down-regulation of long non-coding RNA MEG3 suppresses osteogenic differentiation of periodontal ligament stem cells (PDLSCs) through miR-27a-3p/IGF1 axis in periodontitis
Cited by: 59
Author(s): Yi Liu, Chunpeng Liu, Ankui Zhang, Shichang Yin, Ting Wang, Yan Wang, Meiming Wang, Yixin Liu, Qiaohui Ying, Jian Sun, Fulan Wei, Dongxu Liu, Chunling Wang, Shaohua Ge
Software Mentions: 2
Published: almost 7 years ago

10.1128/AEM.02459-20

A Postbiotic Consisting of Heat-Treated Lactobacilli Has a Bifidogenic Effect in Pure Culture and in Human Fermented Fecal Communities
Cited by: 14
Author(s): Alicja K. Warda, Adam G. Clooney, Feargal J. Ryan, Pedro H. de Almeida Bettio, Giulio Di Benedetto, R. Paul Ross, Colin Hill
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.5768

Geography, seasonality, and host‐associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal
Cited by: 18
Author(s): Samantha Bird, Erin Prewer, Susan Kutz, Lisa‐Marie Leclerc, Sibelle Torres Vilaça, Christopher J. Kyle
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo10110473

Sphingolipid Profiling Reveals Different Extent of Ceramide Accumulation in Bovine Retroperitoneal and Subcutaneous Adipose Tissues
Cited by: 6
Author(s): Yue Hei Leung, Sonja Christiane Bäßler, Christian Koch, Theresa Scheu, Ulrich Meyer, Sven Dänicke, Korinna Huber, Ákos Kenéz
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2752

Is parental competitive ability in winter negatively affected by previous springs’ family size?
Cited by: 4
Author(s): Rienk W. Fokkema, Richard Ubels, Joost M. Tinbergen
Software Mentions: 2
Published: over 9 years ago

10.1002/ece3.6857

Variation in plant leaf traits affects transmission and detectability of herbivore vibrational cues
Cited by: 10
Author(s): Estefania Velilla, Jernej Polajnar, Meta Virant-Doberlet, Daniël Commandeur, Ralph Simon, Johannes H. C. Cornelissen, Jacintha Ellers, Wouter Halfwerk
Software Mentions: 2
Published: over 5 years ago

10.1038/s41396-020-00816-7

Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge)
Cited by: 23
Author(s): Aurélien Lecoeuvre, Bénédicte Ménèz, Mathilde Cannat, Valérie Chavagnac, Emmanuelle Gérard
Software Mentions: 2
Published: over 5 years ago

10.1096/fj.201901618RR

The RNA‐binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs
Cited by: 20
Author(s): Francesca Fasolo, Laura Patrucco, Massimiliano Volpe, Carlotta Bon, Clelia Peano, Flavio Mignone, Piero Carninci, Francesca Persichetti, Claudio Santoro, S. Zucchelli, Daniele Sblattero, Remo Sanges, Diego Cotella, Stefano Gustincich
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo11080487

Antibiotic-Induced Dysbiosis of Microbiota Promotes Chicken Lipogenesis by Altering Metabolomics in the Cecum
Cited by: 15
Author(s): Tao Zhang, Hao Ding, Lan Chen, Yueyue Lin, Yongshuang Gong, Zhiming Pan, Genxi Zhang, Kaizhou Xie, Guojun Dai, Jinyu Wang
Software Mentions: 2
Published: almost 5 years ago

10.1038/ismej.2015.38

Priority effects during fungal community establishment in beech wood
Cited by: 151
Author(s): Jennifer Hiscox, Melanie Savoury, Carsten T. Müller, Björn D. Lindahl, Hilary J. Rogers, Lynne Boddy
Software Mentions: 2
Published: over 11 years ago

10.3390/metabo11070444

Dereplication, Annotation, and Characterization of 74 Potential Antimicrobial Metabolites from Penicillium Sclerotiorum Using t-SNE Molecular Networks
Cited by: 11
Author(s): Téo Hebra, Nicolas Elie, Salomé Poyer, Elsa Van Elslande, David Touboul, Véronique Éparvier
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-016-2600-y

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response
Cited by: 53
Author(s): Diego Robledo, John B. Taggart, J. Ireland, Brendan McAndrew, W. Starkey, Chris Haley, Alastair Hamilton, D. R. Guy, J. C. Mota-Velasco, Almas Gheyas, A. E. Tinch, David W. Verner–Jeffreys, Richard Paley, Georgina S. E. Rimmer, I. Tew, Stephen Bishop, James E. Bron, Ross D. Houston
Software Mentions: 2
Published: about 10 years ago

10.1186/s13075-019-1934-7

Expression analysis of the osteoarthritis genetic susceptibility mapping to the matrix Gla protein gene MGP
Cited by: 25
Author(s): Colin Shepherd, Abigail E. Reese, Louise N. Reynard, John Loughlin
Software Mentions: 2
Published: about 7 years ago

10.1002/ece3.4223

Scaling marine fish movement behavior from individuals to populations
Cited by: 10
Author(s): Christopher A. Griffiths, Toby A. Patterson, Julia L. Blanchard, David Righton, Serena Wright, Jonathan W. Pitchford, Paul G. Blackwell
Software Mentions: 2
Published: almost 8 years ago

10.1093/femsec/fiaa021

Methanogenic response to long-term permafrost thaw is determined by paleoenvironment
Cited by: 22
Author(s): Stine Holm, Josefine Walz, Fabian Horn, Shuai Yang, Mikhail N. Grigoriev, Dirk Wagner, Christian Knoblauch, Susanne Liebner
Software Mentions: 2
Published: over 6 years ago

10.1186/s13075-021-02625-5

Integrative analysis of genome-wide DNA methylation and single-nucleotide polymorphism identified ACSM5 as a suppressor of lumbar ligamentum flavum hypertrophy
Cited by: 6
Author(s): Yanlin Cao, Ye-Nan Zhan, Sujun Qiu, Zhong Chen, Kaiqin Gong, Songjia Ni, Yang Duan
Software Mentions: 2
Published: over 4 years ago

10.3390/metabo9090176

Comparison of Differential Flavor Metabolites in Meat of Lubei White Goat, Jining Gray Goat and Boer Goat
Cited by: 16
Author(s): Wei‐Ting Wang, Bei Sun, Peisong Hu, Meifang Zhou, Su-Jun Sun, Pengfei Du, Yi Ru, Alexander Suvorov, Yongsheng Li, Yaobo Liu, Shoujing Wang
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.7277

How environmental stressors affect reproductive potential in a saltmarsh plant species Plantago maritima
Cited by: 1
Author(s): Magdalena Lazarus, J. Mazur, Katarzyna Wszałek-Rożek, Adrian Zwolicki
Software Mentions: 2
Published: over 5 years ago

10.1093/femsre/fuab018

Ecological and Evolutionary responses to Antibiotic Treatment in the Human Gut Microbiota
Cited by: 17
Author(s): Joseph Hugh Pennycook, Pauline D. Scanlan
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.6790

Redefining floristic zones in the Korean Peninsula using high‐resolution georeferenced specimen data and self‐organizing maps
Cited by: 2
Author(s): Songhie Jung, Yong Chan Cho
Software Mentions: 2
Published: over 5 years ago

10.1002/fsn3.2283

Chain length‐dependent inulin alleviates diet‐induced obesity and metabolic disorders in mice
Cited by: 9
Author(s): Liangkui Li, Lu Zhang, Linkang Zhou, Meijun Jin, Li Xu
Software Mentions: 2
Published: about 5 years ago

10.3390/foods10010196

Native Species Facing Climate Changes: Response of Calafate Berries to Low Temperature and UV Radiation
Cited by: 10
Author(s): María Eugenia Romero-Román, Mauricio Schoebitz, Richard M. Bastías, Pablo S. Fernández, Cristina García‐Viguera, María Dolores López‐Belchi
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6082

Paleo‐metagenomics of North American fossil packrat middens: Past biodiversity revealed by ancient DNA
Cited by: 11
Author(s): Grace Moore, Michael Tessler, Seth W. Cunningham, Julio L. Betancourt, Robert S. Harbert
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.5020

A practical tool for assessing ecosystem services enhancement and degradation associated with invasive alien species
Cited by: 21
Author(s): Rocio Martinez‐Cillero, Simon Willcock, Alvaro Perez‐Diaz, Emma Joslin, Philippine Vergeer, Kelvin S.‐H. Peh
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2018.00432

Dual Platform Long-Read RNA-Sequencing Dataset of the Human Cytomegalovirus Lytic Transcriptome
Cited by: 14
Author(s): Zsolt Balázs, Dóra Tombácz, Attila Szűcs, M Snyder, Zsolt Boldogkői
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.719713

Cross-Species and Human Inter-Tissue Network Analysis of Genes Implicated in Longevity and Aging Reveal Strong Support for Nutrient Sensing
Cited by: 9
Author(s): Avijit Podder, Anish Raju, Nicholas J. Schork
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.00259

Multi-Scale Landscape Influences on Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree
Cited by: 12
Author(s): Rosane Garcia Collevatti, Juliana Silveira dos Santos, Fernanda Fraga Rosa, Tatiana Souza do Amaral, Lázaro José Chaves, Milton Cézar Ribeiro
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 9 years ago

10.1093/aobpla/plaa061

Bryophyte cover and richness decline after 18 years of experimental warming in alpine Sweden
Cited by: 19
Author(s): Juha M. Alatalo, Annika K. Jägerbrand, Mohammad Bagher Erfanian, Shengbin Chen, Shouqin Sun, Ulf Molau
Software Mentions: 2
Published: over 5 years ago

10.1093/aobpla/plw005

Biomechanics and functional morphology of a climbing monocot
Cited by: 14
Author(s): Linnéa Hesse, Sarah T. Wagner, Christoph Neinhuis
Software Mentions: 2
Published: almost 11 years ago

10.1093/aobpla/plab024

Lowering the density: ants associated with the myrmecophyte Tillandsia caput-medusae diminish the establishment of epiphytes
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Author(s): Carmen Agglael Vergara-Torres, Cecilia Díaz‐Castelazo, Víctor Hugo Toledo‐Hernández, Alejandro Flores‐Palacios
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.2686

Sex-specific responses to territorial intrusions in a communication network: Evidence from radio-tagged great tits
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Author(s): Lysanne Snijders, Kees van Oers, Marc Naguib
Software Mentions: 2
Published: over 9 years ago

10.3389/fgene.2021.666300

Identification of a Costimulatory Molecule-Related Signature for Predicting Prognostic Risk in Prostate Cancer
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Author(s): Shengdong Ge, Xiaoliang Hua, Juan Chen, Heng Xiao, Li Zhang, Jun Zhou, Chaozhao Liang, Sheng Tai
Software Mentions: 2
Published: almost 5 years ago

10.1007/s10393-018-1318-5

Trypanosoma cruzi Transmission Among Captive Nonhuman Primates, Wildlife, and Vectors
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Author(s): Carolyn L. Hodo, Gregory K. Wilkerson, Elise C. Birkner, Stanton B. Gray, Sarah A. Hamer
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2019.00284

Prediction of Recurrence in Cervical Cancer Using a Nine-lncRNA Signature
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Author(s): Yu Mao, Dong Liu, Yue Zheng, Jing Dong, Xin Li
Software Mentions: 2
Published: about 7 years ago

10.15252/embr.201948451

Elucidation of the viral disassembly switch of tobacco mosaic virus
Cited by: 18
Author(s): Félix Weis, Maximilian Beckers, Iris von der Hocht, Carsten Sachse
Software Mentions: 2
Published: almost 7 years ago

10.1002/art.41156

Polyfunctional, Proinflammatory, Tissue‐Resident Memory Phenotype and Function of Synovial Interleukin‐17A+ <scp>CD</scp> 8+ T Cells in Psoriatic Arthritis
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Author(s): Kathryn J A Steel, Ushani Srenathan, Michael Ridley, Lucy E Durham, Soon‐Yi Wu, Sarah Ryan, Christopher R. Hughes, Estee Chan, Bruce Kirkham, Leonie S. Taams
Software Mentions: 2
Published: over 6 years ago

10.15252/emmm.202114436

Targeted delivery of a phosphoinositide 3‐kinase γ inhibitor to restore organ function in sepsis
Cited by: 10
Author(s): Adrian T. Press, Petra Babic, Birgit Hoffmann, Tina Müller, Wanling Foo, Walter Hauswald, Jovana Benecke, Martina Beretta, Zoltán Cseresnyés, Stephanie Hoeppener, Ivo Nischang, Sina M. Coldewey, Markus H. Gräler, Reinhard Bauer, Falk A. Gonnert, Nikolaus Gaßler, Reinhard Wetzker, Marc Thilo Figge, Ulrich S. Schubert, Michael Bauer
Software Mentions: 2
Published: almost 5 years ago

10.1002/art.40849

Prioritization of <scp>PLEC</scp> and <scp>GRINA</scp> as Osteoarthritis Risk Genes Through the Identification and Characterization of Novel Methylation Quantitative Trait Loci
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Author(s): S.J. Rice, M. Tselepi, Antony K. Sorial, G. Aubourg, Colin Shepherd, David Almarza, Andrew Skelton, Ioanna Pangou, David J. Deehan, Louise N. Reynard, John Loughlin
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2020.01018

Schizophrenia Polygenic Risk and Brain Structural Changes in Methamphetamine-Associated Psychosis in a South African Population
Cited by: 3
Author(s): Ruth Verity Passchier, Dan J. Stein, Anne Uhlmann, Celia van der Merwe, Shareefa Dalvie
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00504

Development of a Large Gene-Associated SSR Marker Set and in-Depth Genetic Characterization in Scarlet Sage
Cited by: 3
Author(s): Si-Qian Jiao, Aixiang Dong, Tian-Le Shi, Hui Liu, Ilga Porth, Haibo Xin, Jian‐Feng Mao
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2021.668871

Prognostic Power of a Chaperonin Containing TCP-1 Subunit Genes Panel for Hepatocellular Carcinoma
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Author(s): Wenli Li, Jun Li, Hetong Zhao
Software Mentions: 2
Published: about 5 years ago

10.3390/metabo11030143

Solanum lycopersicum Seedlings. Metabolic Responses Induced by the Alkamide Affinin
Cited by: 0
Author(s): Tonatiu Campos-García, Jorge Molina‐Torres
Software Mentions: 2
Published: over 5 years ago

10.15252/embj.201489852

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with <scp>PTB</scp>
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Author(s): Miguel B. Coelho, Jan Attig, Nicolás Bellora, Julian König, Martina Hallegger, Melis Kayikci, Eduardo Eyras, Jernej Ule, Christopher W. Smith
Software Mentions: 2
Published: over 11 years ago

10.1038/s41396-020-00751-7

The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
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Author(s): Chunhui Gao, Hui Cao, Peng Cai, Søren J. Sørensen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.01181

The Identification of Differentially Expressed Genes Showing Aberrant Methylation Patterns in Pheochromocytoma by Integrated Bioinformatics Analysis
Cited by: 4
Author(s): Dongdong Lin, Jinglai Lin, Xiaoxia Li, Jianping Zhang, Lai Peng, Zhifeng Mao, Li Zhang, Yu Zhu, Yujun Liu
Software Mentions: 2
Published: over 6 years ago

10.1016/j.ebiom.2015.11.034

Analysis of B Cell Repertoire Dynamics Following Hepatitis B Vaccination in Humans, and Enrichment of Vaccine-specific Antibody Sequences
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Author(s): Jacob D. Galson, Johannes Trück, Anna Fowler, Elizabeth A. Clutterbuck, Márton Münz, Vincenzo Cerundolo, Claudia Reinhard, Robbert van der Most, Andrew J. Pollard, Gerton Lunter, Dominic F. Kelly
Software Mentions: 2
Published: over 10 years ago

10.1016/j.ebiom.2021.103228

Evaluating the effects of cardiometabolic exposures on circulating proteins which may contribute to severe SARS-CoV-2
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Author(s): Tom G Richardson, Shiqiang Fang, Ruth Mitchell, Michael V. Holmes, George Davey Smith
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.551220

Analysis of the Spectrum of ACE2 Variation Suggests a Possible Influence of Rare and Common Variants on Susceptibility to COVID-19 and Severity of Outcome
Cited by: 27
Author(s): Anton E. Shikov, Yury A. Barbitoff, Andrey S. Glotov, Maria M. Danilova, Ziravard N. Tonyan, Yulia A. Nasykhova, А. А. Михайлова, Olesya N. Bespalova, Roman S. Kalinin, Azizahon M. Mirzorustamova, I. Yu. Kogan, Vladislav S Baranov, Alexander N. Chernov, Dragana M. Pavlovich, Sergey V. Azarenko, Mikhail A. Fedyakov, Victoria V. Tsay, Yuri A. Eismont, О. В. Романова, Dmitry N. Hobotnikov, Dmitry A. Vologzhanin, С. В. Мосенко, Tatiana A. Ponomareva, Yana A. Talts, Anna U. Anisenkova, Д Г Лисовец, Andrey М. Sarana, Stanislav P. Urazov, Sergey G. Scherbak, Oleg S. Glotov
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.661109

Prediction of BRCA Gene Mutation in Breast Cancer Based on Deep Learning and Histopathology Images
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Author(s): Xiaoxiao Wang, Chong Zou, Yi Zhang, Xiuqing Li, Chenxi Wang, Ke Fei, Jie Chen, Wei Wang, Dian Wang, Xinyu Xu, Ling Xie, Yifen Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1242/dmm.044404

Quantitative single-cell interactomes in normal and virus-infected mouse lungs
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Author(s): Margo P. Cain, Belinda Hernández, Jichao Chen
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.22197

Pseudogenes of annexin A2, novel prognosis biomarkers for diffuse gliomas
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Author(s): Shuang Li, Hecun Zou, Yingying Shao, Ying Mei, Yuanda Cheng, Dongli Hu, Zhi‐Rong Tan, Hong‐Hao Zhou
Software Mentions: 2
Published: over 8 years ago

Projects: cran: ggplot2

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Papers Mentioning ggplot2 11,441