Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README

Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.1371/journal.pone.0238523
Transgene behavior in Zea mays L. crosses across different genetic backgrounds: Segregation patterns, cry1Ab transgene expression, insecticidal protein concentration and bioactivity against insect pests
Cited by: 8
Author(s): André Felipe Lohn, Miluse Trtikova, Ignacio H. Chapela, Johnnie Van den Berg, Hannalene du Plessis, Angelika Hilbeck
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0051942
C911: A Bench-Level Control for Sequence Specific siRNA Off-Target Effects
Cited by: 98
Author(s): Eugen Buehler, Yu‐Chi Chen, Scott E. Martin
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0190446
Signatures of positive selection in African Butana and Kenana dairy zebu cattle
Cited by: 43
Author(s): Hussain Bahbahani, Bashir Salim, Faisal Almathen, Fahad Al Enezi, Joram M. Mwacharo, Olivier Hanotte
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0221524
Fatty liver index is a strong predictor of changes in glycemic status in people with prediabetes: The IT-DIAB study
Cited by: 25
Author(s): Matthieu Wargny, Sarra Smati, Matthieu Pichelin, Edith Bigot‐Corbel, Charlotte Authier, Violette Dierry, Yassine Zaïr, Vincent Jacquin, Samy Hadjadj, Jèrôme Boursier, Bertrand Cariou
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0234385
Ancestral mitogenome capture of the Southeast Asian banded linsang
Cited by: 9
Author(s): Johanna L. A. Paijmans, Axel Barlow, Kirstin Henneberger, Joerns Fickel, Michael Hofreiter, Daniel W. Foerster
Software Mentions: 2
Published: about 6 years ago
10.3390/cancers13040783
TAp73β Can Promote Hepatocellular Carcinoma Dedifferentiation
Cited by: 10
Author(s): Evin İşcan, Umut Ekin, Gökhan Yıldız, Özden Öz, Umur Keles, Aslı Süner, Gulcin Cakan-Akdogan, Günes Özhan, Marta Nekulová, Bořivoj Vojtěšek, Hamdiye Uzuner, Gökhan Karakülah, Hani Alotaibi, Mehmet Öztürk
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers12123646
Global Autozygosity Is Associated with Cancer Risk, Mutational Signature and Prognosis
Cited by: 2
Author(s): Limin Jiang, Fei Guo, Jing Tang, S. Leng, Scott A. Ness, Fei Ye, Huining Kang, David C. Samuels, Yan Guo
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers13133332
Colorectal Cancer Patients Have Four Specific Bacterial Species in Oral and Gut Microbiota in Common—A Metagenomic Comparison with Healthy Subjects
Cited by: 18
Author(s): Yoshinori Uchino, Yuichi Goto, Yusuke Konishi, Kan Tanabe, Hiroko Toda, Mitsuru Wada, Yoshiaki Kita, Mahiro Beppu, Shinichiro Mori, Hiroshi Hara, Takao Otsuka, Shoji Natsugoe, Eiji Hara, Tetsuro Sugiura
Software Mentions: 2
Published: about 5 years ago
10.3390/cancers12051147
Plasma-Derived Extracellular Vesicles Convey Protein Signatures That Reflect Pathophysiology in Lung and Pancreatic Adenocarcinomas
Cited by: 19
Author(s): Johannes F. Fahrmann, Xiangying Mao, Ehsan Irajizad, Hiroyuki Katayama, Michela Capello, Ichidai Tanaka, Toshiro Kato, Ignacio I. Wistuba, Anirban Maitra, Edwin J. Ostrin, Samir Hanash, Jody Vykoukal
Software Mentions: 2
Published: over 6 years ago
10.3390/cancers10040088
Use of the Ion PGM and the GeneReader NGS Systems in Daily Routine Practice for Advanced Lung Adenocarcinoma Patients: A Practical Point of View Reporting a Comparative Study and Assessment of 90 Patients
Cited by: 12
Author(s): Simon Heeke, Paul Hofman, Élodie Long-Mira, Virginie Lespinet, Salomé Lalvée, Olivier Bordone, Camille Ribeyre, Virginie Tanga, Jonathan Benzaquen, Sylvie Leroy, Charlotte Cohen, Jérôme Mouroux, Charles Hugo Marquette
Software Mentions: 2
Published: over 8 years ago
10.1038/s41421-018-0072-8
Targeting JNK pathway promotes human hematopoietic stem cell expansion
Cited by: 27
Author(s): Xiyuan Xiao, Weifeng Lai, Huangfan Xie, Yang Liu, Weijie Guo, Yifang Liu, Li Yu, Yuanjun Li, Jingliang Simon Zhang, Wenhan Chen, Minhui Shi, Shang Liu, Ming Yin, Chengyan Wang, Hongkui Deng
Software Mentions: 2
Published: over 7 years ago
10.1016/j.chom.2018.04.017
Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico
Cited by: 80
Author(s): Julien Thézé, Tony Li, Louis du Plessis, Jérôme Bouquet, Moritz U. G. Kraemer, Sneha Somasekar, Guixia Yu, Mariateresa de Cesare, Ángel Balmaseda, Guillermina Kuan, Eva Harris, Chieh-Hsi Wu, Azim Ansari, Rory Bowden, Nuno Rodrigues Faria, Shigeo Yagi, Sharon Messenger, Trevor Brooks, Mars Stone, Evan M. Bloch, Michael P. Busch, José Esteban Muñoz-Medina, César González-Bonilla, Steven M. Wolinsky, Susana López, David Bonsall, Charles Y. Chiu, Oliver G. Pybus
Software Mentions: 2
Published: about 8 years ago
10.1038/s41423-020-00599-z
Efficient IL-2R signaling differentially affects the stability, function, and composition of the regulatory T-cell pool
Cited by: 18
Author(s): Marc Permanyer, Berislav Bošnjak, Silke Glage, Michaela Friedrichsen, Stefan Floess, Jochen Huehn, Gwendolyn E. Patzer, Ivan Odak, Nadine Eckert, Razieh Zargari, Laura Ospina-Quintero, Hristo Georgiev, Reinhold Förster
Software Mentions: 2
Published: over 5 years ago
10.1111/cpr.13028
Immunosuppressive effect of mesenchymal stem cells on lung and gut CD8 <sup>+</sup> T cells in lipopolysaccharide‐induced acute lung injury in mice
Cited by: 24
Author(s): Yanping Xu, Jiaqi Zhu, Bing Feng, Feiyan Lin, Jiarong Zhou, Jingqi Liu, Xiaowei Shi, Xuan Li, Qiaoling Pan, Jiong Yu, Ying Zhang, Lanjuan Li, Hong Cao
Software Mentions: 2
Published: over 5 years ago
10.1186/s13619-021-00078-4
Forkhead box family transcription factors as versatile regulators for cellular reprogramming to pluripotency
Cited by: 7
Author(s): Meijun Fu, Huan Chen, Zepo Cai, Yihang Yang, Ziyu Feng, Meiqin Zeng, Lijun Chen, Yue Qin, Baomei Cai, Pinghui Zhu, Chunhua Zhou, Shengyong Yu, Jing Guo, Jing Liu, Shuiyan Cao, Duanqing Pei
Software Mentions: 2
Published: about 5 years ago
10.1016/j.celrep.2020.108274
An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain
Cited by: 139
Author(s): Nicholas C. Wu, Meng Yuan, Hejun Liu, Chang-Chun David Lee, Xueyong Zhu, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.celrep.2021.109716
Myosin-X and talin modulate integrin activity at filopodia tips
Cited by: 25
Author(s): Mitro Miihkinen, Max L.B. Grönloh, Aleksandra Popović, Helena Vihinen, Eija Jokitalo, Benjamin T. Goult, Johanna Ivaska, Guillaume Jacquemet
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.xcrm.2021.100276
Diverse immune response of DNA damage repair-deficient tumors
Cited by: 12
Author(s): Tao Qing, Tomi Jun, Katherine E. Lindblad, Amaia Lujambio, Michał Marczyk, Lajos Pusztai, Kuan‐lin Huang
Software Mentions: 2
Published: over 5 years ago
10.1038/s41422-020-0354-1
Immunity-and-matrix-regulatory cells derived from human embryonic stem cells safely and effectively treat mouse lung injury and fibrosis
Cited by: 49
Author(s): Jun Wu, Dingyun Song, Zhongwen Li, Baojie Guo, Yani Xiao, Wenjing Liu, Liping Liang, Chunjing Feng, Tingting Gao, Yanxia Chen, Ying Li, Zai Wang, Jianyan Wen, Shengnan Yang, Peipei Li, Lei Wang, Yukai Wang, Liang Peng, Glyn Stacey, Zheng Hu, Guihai Feng, Wei Li, Yan Huo, Ronghua Jin, Ng Shyh‐Chang, Qi Zhou, Liu Wang, Baoyang Hu, Huaping Dai, Jie Hao
Software Mentions: 2
Published: about 6 years ago
10.3390/cells10071838
Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: about 5 years ago
10.3390/cells10071701
Phosphorylation in the Charged Linker Modulates Interactions and Secretion of Hsp90β
Cited by: 5
Author(s): Lorenz Weidenauer, Manfredo Quadroni
Software Mentions: 2
Published: about 5 years ago
10.3390/cells10092380
Mitochondrial Disruption by Amyloid Beta 42 Identified by Proteomics and Pathway Mapping
Cited by: 11
Author(s): Patricia Sinclair, Ancha Baranova, Nadine Kabbani
Software Mentions: 2
Published: almost 5 years ago
10.3390/cells9061556
Circulating microRNA Signature Associated to Interstitial Lung Abnormalities in Respiratory Asymptomatic Subjects
Cited by: 12
Author(s): Blanca Ortíz-Quintero, Ivette Buendía-Roldán, Eric G. Ramírez‐Salazar, Yalbi I. Balderas-Martínez, Sandra Lizbeth Ramírez-Rodríguez, Karen Martínez-Espinosa, Moisés Selman
Software Mentions: 2
Published: about 6 years ago
10.3390/cells10020241
Spermatogonia Loss Correlates with LAMA 1 Expression in Human Prepubertal Testes Stored for Fertility Preservation
Cited by: 13
Author(s): Magdalena Kurek, Elisabet Åkesson, Masahito Yoshihara, Elizabeth Oliver, Yanhua Cui, Martin Becker, João Pedro Alves-Lopes, Ragnar Bjarnason, Patrik Romerius, Mikael Sundin, Ulrika Norén Nyström, Cecilia Langenskiöld, Hartmut Vogt, Lars Henningsohn, Cecilia Petersen, Olle Söder, Jingtao Guo, Rod T Mitchell, Kirsi Jahnukainen, Jan-Bernd Stukenborg
Software Mentions: 2
Published: over 5 years ago
10.3390/cells8040306
Comparing the Utility of Mitochondrial and Nuclear DNA to Adjust for Genetic Ancestry in Association Studies
Cited by: 17
Author(s): Brendan Miller, Thalida Em Arpawong, Henry Jiao, Su-Jeong Kim, Kelvin Yen, Hemal H. Mehta, Junxiang Wan, John Carpten, Pinchas Cohen
Software Mentions: 2
Published: over 7 years ago
10.3390/cells10010005
Depletion of Embryonic Macrophages Leads to a Reduction in Angiogenesis in the Ex Ovo Chick Chorioallantoic Membrane Assay
Cited by: 6
Author(s): Hanna Tay, Charis Du Cheyne, Kristel Demeyere, Jurgen De Craene, Lobke De Bels, Evelyne Meyer, Andries Zijlstra, Ward De Spiegelaere
Software Mentions: 2
Published: over 5 years ago
10.3390/cells9061560
Mistletoe-Extract Drugs Stimulate Anti-Cancer Vγ9Vδ2 T Cells
Cited by: 8
Author(s): Lifang Ma, Swati Phalke, Caroline Stévigny, Florence Souard, David Vermijlen
Software Mentions: 2
Published: about 6 years ago
10.3390/cells10040736
Control of Protein and Energy Metabolism in the Pituitary Gland in Response to Three-Week Running Training in Adult Male Mice
Cited by: 3
Author(s): Christina Walz, Julia Brenmoehl, Nares Trakooljul, Antonia Noce, Caroline Caffier, Daniela Ohde, Martina Langhammer, Klaus Wimmers, Siriluck Ponsuksili, Andreas Hoeflich
Software Mentions: 2
Published: over 5 years ago
10.3390/cells10020394
Genetically Raised Circulating Bilirubin Levels and Risk of Ten Cancers: A Mendelian Randomization Study
Cited by: 10
Author(s): Nazlisadat Seyed Khoei, Robert Carreras‐Torres, Neil Murphy, Marc J. Gunter, Paul Brennan, Karl Smith-Byrne, Daniela Mariosa, James McKay, Tracy A. O’Mara, Ruth F. Jarrett, Henrik Hjalgrim, Karin E. Smedby, Wendy Cozen, Kenan Onel, Arjan Diepstra, Karl‐Heinz Wagner, Heinz Freisling
Software Mentions: 2
Published: over 5 years ago
10.3390/cells10092171
Addendum: Gouriou et al. ANT2-Mediated ATP Import into Mitochondria Protects against Hypoxia Lethal Injury. Cells 2020, 9, 2542
Cited by: 1
Author(s): Yves Gouriou, Muhammad Rizwan Alam, Zeina Harhous, Claire Crola Da Silva, Delphine Baetz, Sally Badawi, Étienne Lefai, Jennifer Rieusset, Annie Durand, Rania Harisseh, Abdallah Gharib, Michel Ovize, Gabriel Bidaux
Software Mentions: 2
Published: almost 5 years ago
10.3390/cells10010068
Limited Proteolysis-Coupled Mass Spectrometry Identifies Phosphatidylinositol 4,5-Bisphosphate Effectors in Human Nuclear Proteome
Cited by: 18
Author(s): Martin Sztacho, Barbora Šalovská, Jakub Červenka, Can Balaban, Peter Hoboth, Pavel Hozák
Software Mentions: 2
Published: over 5 years ago
10.3390/cells10061462
Single-Cell RNA-Seq Reveals Transcriptomic Heterogeneity and Post-Traumatic Osteoarthritis-Associated Early Molecular Changes in Mouse Articular Chondrocytes
Cited by: 35
Author(s): Aimy Sebastian, Jillian L. McCool, Nicholas R. Hum, Deepa K. Murugesh, Stephen Wilson, Blaine A. Christiansen, Gabriela G. Loots
Software Mentions: 2
Published: about 5 years ago
10.3390/cells9081789
Protamine-2 Deficiency Initiates a Reactive Oxygen Species (ROS)-Mediated Destruction Cascade during Epididymal Sperm Maturation in Mice
Cited by: 17
Author(s): Simon Schneider, Farhad Shakeri, Christian Trötschel, Lena Arévalo, Alexander Kruse, Andreas Buneß, Ansgar Poetsch, Klaus Steger, Hubert Schorle
Software Mentions: 2
Published: about 6 years ago
10.3390/cells10051214
Sex-Specific Isolation and Propagation of Human Premeiotic Fetal Germ Cells and Germ Cell-Like Cells
Cited by: 11
Author(s): Swati Mishra, Jasin Taelman, Yolanda W. Chang, Annekatrien Boel, Petra De Sutter, Björn Heindryckx, Susana M. Chuva de Sousa Lopes
Software Mentions: 2
Published: over 5 years ago
10.1093/texcom/tgaa043
Dynamic Modulation of Beta Band Cortico-Muscular Coupling Induced by Audio–Visual Rhythms
Cited by: 8
Author(s): Manuel Varlet, Sylvie Nozaradan, Laurel J. Trainor, Peter E. Keller
Software Mentions: 2
Published: over 6 years ago
10.1093/texcom/tgab013
Neural Representations of Death in the Cortical Midline Structures Promote Temporal Discounting
Cited by: 1
Author(s): Kuniaki Yanagisawa, Emiko S. Kashima, Yayoi Shigemune, Ryusuke Nakai, Nobuhito Abe
Software Mentions: 2
Published: over 5 years ago
10.1038/s42003-021-02319-3
Joint control of visually guided actions involves concordant increases in behavioural and neural coupling
Cited by: 7
Author(s): David R. Painter, Jeffrey Kim, Angela I. Renton, Jason B. Mattingley
Software Mentions: 2
Published: about 5 years ago
10.1111/cobi.12548
A meta‐analysis of functional group responses to forest recovery outside of the tropics
Cited by: 53
Author(s): Rebecca Spake, Thomas H. G. Ezard, Philip A. Martin, Adrian C. Newton, C. Patrick Doncaster
Software Mentions: 2
Published: about 11 years ago
10.1111/conl.12381
Native Seed Supply and the Restoration Species Pool
Cited by: 66
Author(s): Emma Ladouceur, Borja Jímenez‐Alfaro, María Susana Marín, Marcello De Vitis, Holly Abbandonato, Pietro P. M. Iannetta, Costantino Bonomi, Hugh W. Pritchard
Software Mentions: 2
Published: about 9 years ago
10.1093/conphys/coaa049
Basal tolerance but not plasticity gives invasive springtails the advantage in an assemblage setting
Cited by: 16
Author(s): Laura M. Phillips, Ian J. Aitkenhead, Charlene Janion‐Scheepers, Catherine K. King, Melodie A. McGeoch, Uffe N. Nielsen, Aleks Terauds, W P Amy Liu, Steven L. Chown
Software Mentions: 2
Published: over 6 years ago
10.1093/conphys/cow053
Interactions between rates of temperature change and acclimation affect latitudinal patterns of warming tolerance
Cited by: 46
Author(s): Jessica L. Allen, Steven Loudon Chown, Charlene Janion‐Scheepers, Susana Clusella‐Trullas
Software Mentions: 2
Published: over 10 years ago
10.1093/conphys/coaa100
Shifts in sensitivity of amphibian metamorphosis to endocrine disruption: the common frog (<i>Rana temporaria</i>) as a case study
Cited by: 13
Author(s): Katharina Ruthsatz, Kathrin H. Dausmann, Katharina Paesler, Patricia Babos, Nikita M. Sabatino, Myron A. Peck, Julian Glos
Software Mentions: 2
Published: over 6 years ago
10.1093/conphys/coy059
Thyroid hormone levels and temperature during development alter thermal tolerance and energetics of<i>Xenopus laevis</i>larvae
Cited by: 13
Author(s): Katharina Ruthsatz, Kathrin H. Dausmann, Myron A. Peck, Claudia Drees, Nikita M. Sabatino, Laura I. Becker, Janica Reese, Lisa Hartmann, Julian Glos
Software Mentions: 2
Published: over 8 years ago
10.1186/s13054-020-2754-5
Cathelicidin preserves intestinal barrier function in polymicrobial sepsis
Cited by: 22
Author(s): Jeffery Ho, Hung Chan, Yonghao Liang, Xiao Dong Liu, Lin Zhang, Qing Li, Yuchen Zhang, Judeng Zeng, Felix N. Ugwu, Idy H. T. Ho, Wei Hu, Johnny Chung Wai Yau, Sunny H. Wong, Wai Tat Wong, Lowell Ling, Chi H. Cho, Richard L. Gallo, Tony Gin, Gary Tse, Jun Yu, Matthew T.V. Chan, Constant Leung, William Wu
Software Mentions: 2
Published: over 6 years ago
10.1186/s13054-016-1450-y
Utility of neuron-specific enolase in traumatic brain injury; relations to S100B levels, outcome, and extracranial injury severity
Cited by: 102
Author(s): Eric Peter Thelin, Emma Jeppsson, Arvid Frostell, Mikael Svensson, Stefania Mondello, Bo‐Michael Bellander, David W. Nelson
Software Mentions: 2
Published: almost 10 years ago
10.7759/cureus.10835
Improving CT-Derived Fractional Flow Reserve Analysis: A Quality Improvement Initiative
Cited by: 1
Author(s): Jeffrey Waltz, Madison Kocher, Jacob Kahn, Rebecca Leddy, Jordan Chamberlin, Daniel Cook, Jeremy R. Burt
Software Mentions: 2
Published: almost 6 years ago
10.7759/cureus.14501
Albumin Level at Admission to the Intensive Care Unit Is Associated With Prognosis in Cardiac Arrest Patients
Cited by: 2
Author(s): Yide Li, Yingfang She, Weisheng Mo, Biao Jin, Wendi Xiang, Liang Luo
Software Mentions: 2
Published: over 5 years ago
10.1007/s11892-019-1192-8
Genetic and Environmental Interaction in Type 1 Diabetes: a Relationship Between Genetic Risk Alleles and Molecular Traits of Enterovirus Infection?
Cited by: 31
Author(s): Marfa Blanter, Helena Sork, Soile Tuomela, Malin Flodström‐Tullberg
Software Mentions: 2
Published: about 7 years ago
10.1016/j.dib.2021.107111
RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
Cited by: 3
Author(s): Yuki Yoshida, Daiki D. Horikawa, Tetsuya Sakashita, Yuichiro Yokota, Yasuhiko Kobayashi, Masaru Tomita, Kazuharu Arakawa
Software Mentions: 2
Published: about 5 years ago
10.1016/j.dib.2020.105971
Metagenomic data on bacterial diversity profiling of high-microbial-abundance tropical marine sponges Aaptos aaptos and Xestospongia muta from waters off terengganu, South China Sea
Cited by: 3
Author(s): Tan Suet May Amelia, Nyok-Sean Lau, Al-Ashraf Abdullah Amirul, Kesaven Bhubalan
Software Mentions: 2
Published: about 6 years ago
10.1016/j.dib.2020.106282
Seasonal Ely Copper Mine Superfund site shotgun metagenomic and metatranscriptomic data analysis
Cited by: 1
Author(s): Lesley-Ann Giddings, George E. Chlipala, Heather Driscoll, Kieran Bhave, Kevin Kunstman, Stefan J. Green, Katherine Morillo, Holly Peterson, Mark Maienschein‐Cline
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.dib.2021.107093
A standardized dataset for conservation prioritization of songbirds to support CITES
Cited by: 3
Author(s): Jacqueline Juergens, Simon Bruslund, Johanna Staerk, Rikke Oegelund Nielsen, Chris R. Shepherd, Boyd T.C. Leupen, Kanitha Krishnasamy, Serene C. L. Chng, John A Jackson, Rita da Silva, Antony Bagott, Rômulo Romeu Nóbrega Alves, Dalia Amor Conde
Software Mentions: 2
Published: about 5 years ago
10.1093/database/baaa111
MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
Cited by: 2
Author(s): Olof Asplund, Johan Rung, Leif Groop, Rashmi B. Prasad, Ola Hansson
Software Mentions: 2
Published: over 6 years ago
10.1002/dep2.97
Suppressed competitive exclusion enabled the proliferation of Permian/Triassic boundary microbialites
Cited by: 35
Author(s): William J. Foster, Katrin Heindel, Sylvain Richoz, Jana Gliwa, Daniel J. Lehrmann, Aymon Baud, Tea Kolar‐Jurkovšek, Dunja Aljinović, Bogdan Jurkovšek, Dieter Korn, Rowan C. Martindale, Jörn Peckmann
Software Mentions: 2
Published: almost 7 years ago
10.1016/j.devcel.2017.01.015
Spatiotemporal Analysis of a Glycolytic Activity Gradient Linked to Mouse Embryo Mesoderm Development
Cited by: 87
Author(s): Vinay Bulusu, Nicole Prior, Marteinn T. Snaebjornsson, Andreas Kuehne, Katharina F. Sonnen, Jana Kress, Frank Stein, Carsten Schultz, Uwe Sauer, Alexander Aulehla
Software Mentions: 2
Published: over 9 years ago
10.1037/dev0000903
Supporting the old but neglecting the young? The two faces of ageism.
Cited by: 20
Author(s): Christopher Bratt, Dominic Abrams, Hannah J. Swift
Software Mentions: 2
Published: over 6 years ago
10.1242/dev.152041
Control of inner cells' proportion by asymmetric divisions and ensuing resilience of cloned rabbit embryos
Cited by: 4
Author(s): Dimitri Fabrèges, Nathalie Daniel, Véronique Duranthon, Nadine Peyriéras
Software Mentions: 2
Published: over 8 years ago
10.1242/dev.189449
Establishment of a relationship between blastomere geometry and YAP localisation during compaction
Cited by: 12
Author(s): Christophe Royer, Karolis Leonavicius, Annemarie Kip, Deborah Fortin, Kirtirupa Nandi, Anna Vincent, Céline Jones, Tim Child, Kevin Coward, Chris Graham, Shankar Srinivas
Software Mentions: 2
Published: over 6 years ago
10.1242/dev.166025
Geometrical confinement controls the asymmetric patterning of Brachyury in cultures of pluripotent cells
Cited by: 39
Author(s): Guillaume Blin, Darren Wisniewski, Catherine Picart, Manuel Théry, Michel Pucéat, Sally Lowell
Software Mentions: 2
Published: over 8 years ago
10.1242/dev.199430
Single-cell morphometrics reveals ancestral principles of notochord development
Cited by: 19
Author(s): Toby G. R. Andrews, Wolfram Pönisch, Ewa K. Paluch, Benjamin Steventon, Èlia Benito‐Gutiérrez
Software Mentions: 2
Published: about 5 years ago
10.1007/s00125-020-05376-1
Oral insulin immunotherapy in children at risk for type 1 diabetes in a randomised controlled trial
Cited by: 28
Author(s): Robin Assfalg, Jan Knoop, Kristi L. Hoffman, Markus Pfirrmann, Jose Zapardiel‐Gonzalo, Anna Hofelich, Anne Eugster, Marc Weigelt, Claudia Matzke, Julia Reinhardt, Yannick F. Fuchs, Melanie Bunk, Andreas Weiß, Markus Hippich, Kathrin Halfter, Stefanie M. Hauck, Jörg Hasford, Joseph F. Petrosino, Peter Achenbach, Ezio Bonifacio, Anette‐Gabriele Ziegler
Software Mentions: 2
Published: over 5 years ago
10.1007/s00125-021-05558-5
Sitting less elicits metabolic responses similar to exercise and enhances insulin sensitivity in postmenopausal women
Cited by: 8
Author(s): Carlijn M. E. Remie, Georges E. Janssens, Lena Bilet, Michel van Weeghel, Bernard M. F. M. Duvivier, Vera H. W. de Wit, Niels J. Connell, Johanna A. Jörgensen, Bauke V. Schomakers, Vera B. Schrauwen‐Hinderling, Joris Hoeks, Matthijs K. C. Hesselink, Esther Phielix, Riekelt H. Houtkooper, Patrick Schrauwen
Software Mentions: 2
Published: almost 5 years ago
10.1530/ERC-17-0442
The microbiome in PTEN hamartoma tumor syndrome
Cited by: 5
Author(s): Victoria Byrd, Ted M. Getz, Roshan Padmanabhan, Hans Arora, Charis Eng
Software Mentions: 2
Published: over 8 years ago
10.1186/s12940-015-0082-z
Building-related health impacts in European and Chinese cities: a scalable assessment method
Cited by: 7
Author(s): Jouni T. Tuomisto, Marjo Niittynen, Erkki Pärjälä, Arja Asikainen, Laura Pérez, Stephan Trüeb, Matti Jantunen, Nino Künzli, Clive E. Sabel
Software Mentions: 2
Published: over 10 years ago
10.1111/1462-2920.15269
Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal <i>Anaerobutyricum</i> and <i>Anaerostipes</i> species by comparative proteogenomics
Cited by: 34
Author(s): Sudarshan A. Shetty, Sjef Boeren, Thi Phuong Nam Bui, Hauke Smidt, Willem M. de Vos
Software Mentions: 2
Published: almost 6 years ago
10.1111/1462-2920.14896
Ecogenomics of the SAR11 clade
Cited by: 55
Author(s): Jose M. Haro‐Moreno, Francisco Rodrı́guez-Valera, Riccardo Rosselli, Francisco Martínez-Hernández, Juan J. Roda‐Garcia, Mónica Lluesma Gómez, Òscar Fornas, Manuel Martínez‐García, Mario López‐Pérez
Software Mentions: 2
Published: over 6 years ago
10.1007/s11356-021-14508-y
Assessment of anthropogenic pollution by monitoring occurrence and distribution of chemicals in the river Liffey in Dublin
Cited by: 2
Author(s): Rosa Peñalver, Matthew Jacobs, Susan Hegarty, Fiona Regan
Software Mentions: 2
Published: about 5 years ago
10.1007/s11356-021-13885-8
Characterization of microbial response to petroleum hydrocarbon contamination in a lacustrine ecosystem
Cited by: 6
Author(s): Emilio D’Ugo, Marco Bruno, Arghya Mukherjee, Dhrubajyoti Chattopadhyay, Roberto Giuseppetti, Rita De Pace, Fabio Magurano
Software Mentions: 2
Published: over 5 years ago
10.1007/s11356-020-09621-3
Distance to landfill and human activities affects the debris incorporation into the white stork nests in urbanized landscape in central Spain
Cited by: 13
Author(s): Zuzanna Jagiełło, Alejandro López‐García, José I. Aguirre, Łukasz Dylewski
Software Mentions: 2
Published: about 6 years ago
10.1002/etc.4844
Simulating Honey Bee Large‐Scale Colony Feeding Studies Using the BEEHAVE Model—Part II: Analysis of Overwintering Outcomes
Cited by: 8
Author(s): Farah Abi‐Akar, Amélie Schmolke, Colleen Roy, Nika Galić, Silvia Hinarejos
Software Mentions: 2
Published: almost 6 years ago
10.1080/15592294.2019.1649527
Non-alcoholic fatty liver disease (NAFLD) is associated with dynamic changes in DNA hydroxymethylation
Cited by: 29
Author(s): Marcus J. Lyall, John P. Thomson, Jessy Cartier, Raffaele Ottaviano, Timothy J. Kendall, Richard R. Meehan, Amanda J. Drake
Software Mentions: 2
Published: about 7 years ago
10.1080/15592294.2017.1395121
Generation of an arrayed CRISPR-Cas9 library targeting epigenetic regulators: from high-content screens to <i>in vivo</i> assays
Cited by: 24
Author(s): Tristan Henser-Brownhill, Josep Monserrat, Paola Scaffidi
Software Mentions: 2
Published: over 8 years ago
10.1186/s13072-016-0054-8
Profiling placental and fetal DNA methylation in human neural tube defects
Cited by: 40
Author(s): E. Magda Price, Maria S. Peñaherrera, Élodie Portales-Casamar, Paul Pavlidis, Margot I. Van Allen, Deborah E. McFadden, Wendy P. Robinson
Software Mentions: 2
Published: over 10 years ago
10.1186/s13072-018-0194-0
Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten
Cited by: 34
Author(s): Shalima S. Nair, Phuc-Loi Luu, Wenjia Qu, Madhavi P. Maddugoda, Lily I. Huschtscha, Roger R. Reddel, Georgia Chenevix-Trench, Martina Toso, James G. Kench, Lisa G. Horvath, Vanessa M. Hayes, Phillip D. Stricker, Timothy P. Hughes, Deborah L. White, John E.J. Rasko, Justin Wong, Susan J. Clark
Software Mentions: 2
Published: about 8 years ago
10.1186/s13072-018-0229-6
The methylome of the marbled crayfish links gene body methylation to stable expression of poorly accessible genes
Cited by: 54
Author(s): Fanny Gatzmann, Cassandra Falckenhayn, Julian Gutekunst, Katharina Hanna, Günter Raddatz, Vitor Coutinho Carneiro, Frank Lyko
Software Mentions: 2
Published: almost 8 years ago
10.1007/s00787-019-01432-3
Toddlers’ diurnal cortisol levels affected by out-of-home, center-based childcare and at-home, guardian-supervised childcare: comparison between different caregiving contexts
Cited by: 10
Author(s): Katja Tervahartiala, Linnéa Karlsson, Juho Pelto, Susanna Kortesluoma, Sirpa Hyttinen, Annarilla Ahtola, Niina Junttila, Hasse Karlsson
Software Mentions: 2
Published: almost 7 years ago
10.1093/ehjci/jex218
Doppler assessment of aortic stenosis: a 25-operator study demonstrating why reading the peak velocity is superior to velocity time integral
Cited by: 16
Author(s): Stefano Sacchi, Niti M. Dhutia, Matthew Shun-Shin, Massoud Zolgharni, Nilesh Sutaria, DP Francis, Graham Cole
Software Mentions: 2
Published: over 8 years ago
10.1002/eji.202048841
Monocytes promote UV‐induced epidermal carcinogenesis
Cited by: 5
Author(s): Iva Lelios, Sebastian A. Stifter, Virginia Cecconi, Ekaterina Petrova, Mirjam Lutz, Dilay Cansever, Sebastian G. Utz, Burkhard Becher, Maries van den Broek, Melanie Greter
Software Mentions: 2
Published: over 5 years ago
10.1186/s40001-021-00535-5
Inherited unbalanced reciprocal translocation with 3q duplication and 5p deletion in a foetus revealed by cell-free foetal DNA (cffDNA) testing: a case report
Cited by: 0
Author(s): Taccyanna Mikulski Ali, Emilia Mateu‐Brull, Nuria Balaguer, Camila Gomes Dantas, Haline Risso Borges, Mariana Quintans Guerra de Oliveira, Lorena Rodrigo, Inmaculada Campos‐Galindo, Roser Navarro, Miguel Milán
Software Mentions: 2
Published: about 5 years ago
10.1186/s40001-021-00481-2
LncRNA NEAT1 promotes nucleus pulposus cell matrix degradation through regulating Nrf2/ARE axis
Cited by: 7
Author(s): Li Cheng, Xiaobo Ma, Chenfei Ni, Jingyan Xu, Y J Xie, Junwei Kan, Xiaoli Wei
Software Mentions: 2
Published: over 5 years ago
10.1111/ejn.15199
White matter microstructure of the neural emotion regulation circuitry in mild traumatic brain injury
Cited by: 3
Author(s): Harm Jan van der Horn, Namrata R. Mangina, Sandra E. Rakers, J G M Kok, Marieke E. Timmerman, Alexander Leemans, Jacoba M. Spikman, Joukje van der Naalt
Software Mentions: 2
Published: over 5 years ago
10.1007/s00394-019-02122-1
Lower carbohydrate and higher fat intakes are associated with higher hemoglobin A1c: findings from the UK National Diet and Nutrition Survey 2008–2016
Cited by: 15
Author(s): Chaitong Churuangsuk, Michael E. J. Lean, Emilie Combet
Software Mentions: 2
Published: almost 7 years ago
10.1007/s10680-017-9458-9
The Length of Working Life in Spain: Levels, Recent Trends, and the Impact of the Financial Crisis
Cited by: 22
Author(s): Christian Dudel, María Andrée López Gómez, Fernando G. Benavides, Mikko Myrskylä
Software Mentions: 2
Published: over 8 years ago
10.1155/2020/9818349
Orlistat-Induced Gut Microbiota Modification in Obese Mice
Cited by: 22
Author(s): Jing Ke, Yingli An, Bin Cao, Jianan Lang, Nannan Wu, Dong Zhao
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/8979713
Data Mining and Systematic Pharmacology to Reveal the Mechanisms of Traditional Chinese Medicine in Recurrent Respiratory Tract Infections’ Treatment
Cited by: 5
Author(s): Changyong Luo, He Yu, Tao Yang, Chen Bai, Bing He, Yurou Yan, Tiegang Liu, Junhong Wang, Xiaohong Gu
Software Mentions: 2
Published: almost 6 years ago
10.1155/2021/5557873
Overexpression of MAL2 Correlates with Immune Infiltration and Poor Prognosis in Breast Cancer
Cited by: 3
Author(s): Yue Zhong, Zhenjie Zhuang, Peiju Mo, Qi Shang, Min Lin, Jiaqian Gong, Jingmin Huang, Haiyan Mo, Mei Huang
Software Mentions: 2
Published: almost 5 years ago
10.1155/2021/9863714
Based on Network Pharmacology and RNA Sequencing Techniques to Explore the Molecular Mechanism of Huatan Jiangzhuo Decoction for Treating Hyperlipidemia
Cited by: 1
Author(s): Xiaowen Zhou, Zhenqian Yan, Yaxin Wang, Qi Ren, Xiaoqi Liu, Ge Fang, Bin Wang, Xiantao Li
Software Mentions: 2
Published: over 5 years ago
10.1111/eva.13081
Growing in the city: Urban evolutionary ecology of avian growth rates
Cited by: 27
Author(s): Michela Corsini, Eva Maria Schöll, Irene Di Lecce, Marion Chatelain, Anna Dubiec, Marta Szulkin
Software Mentions: 2
Published: almost 6 years ago
10.1111/eva.13187
Sex‐ and time‐specific parental effects of warming on reproduction and offspring quality in a coral reef fish
Cited by: 12
Author(s): Rachel K. Spinks, Lucrezia C. Bonzi, Timothy Ravasi, Philip L. Munday
Software Mentions: 2
Published: over 5 years ago
10.1002/evl3.220
Experimental evolution supports signatures of sexual selection in genomic divergence
Cited by: 11
Author(s): R. Axel W. Wiberg, Paris Veltsos, Rhonda R. Snook, Michael G. Ritchie
Software Mentions: 2
Published: about 5 years ago
10.1002/evl3.83
Competitive species interactions constrain abiotic adaptation in a bacterial soil community
Cited by: 31
Author(s): James P. J. Hall, Ellie Harrison, Michael A. Brockhurst
Software Mentions: 2
Published: over 7 years ago
10.1002/evl3.42
Horizontal gene cluster transfer increased hallucinogenic mushroom diversity
Cited by: 66
Author(s): Hannah T. Reynolds, Vinod Vijayakumar, Emile Gluck‐Thaler, Hailee Brynn Korotkin, P. Brandon Matheny, Jason C. Slot
Software Mentions: 2
Published: over 8 years ago
10.1111/evo.13583
The appearance of mimetic <i>Heliconius</i> butterflies to predators and conspecifics
Cited by: 30
Author(s): Denise Dalbosco Dell’Aglio, Jolyon Troscianko, W. Owen McMillan, Martin Stevens, Chris D. Jiggins
Software Mentions: 2
Published: almost 8 years ago
10.1111/evo.13193
Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change
Cited by: 26
Author(s): Valerie J. Morley, Paul Turner
Software Mentions: 2
Published: over 9 years ago
10.12688/f1000research.27393.3
Towards establishing extracellular vesicle-associated RNAs as biomarkers for HER2+ breast cancer
Cited by: 2
Author(s): Colin L. Hisey, Petr Tomek, Yohanes Nursalim, Larry Chamley, Euphemia Leung
Software Mentions: 2
Published: over 5 years ago
10.12688/f1000research.23996.2
Prediction of repurposed drugs for treating lung injury in COVID-19
Cited by: 23
Author(s): Bing He, Lana X. Garmire
Software Mentions: 2
Published: almost 6 years ago
10.12688/f1000research.12321.1
Second ISCB Latin American Student Council Symposium (LA-SCS) 2016
Cited by: 5
Author(s): Alexander Miguel Monzón, Marcia Anahí Hasenahuer, Estefanía Mancini, Nilson Da Rocha Coimbra, Fiorella Cravero, Javier Cáceres-Molina, César A. Ramírez‐Sarmiento, Nicolás Palopoli, Pieter Meysman, R. Gonzalo Parra
Software Mentions: 2
Published: about 9 years ago
10.12688/f1000research.9022.1
ddpcr: an R package and web application for analysis of droplet digital PCR data
Cited by: 24
Author(s): Dean Attali, Roza Bidshahri, Charles A. Haynes, Jenny Bryan
Software Mentions: 2
Published: about 10 years ago
10.12688/f1000research.16409.2
gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2
Cited by: 59
Author(s): Jesper L.V. Mååg
Software Mentions: 2
Published: almost 8 years ago
10.12688/f1000research.6055.3
A double blinded, placebo-controlled pilot study to examine reduction of CD34+/CD117+/CD133+ lymphoma progenitor cells and duration of remission induced by neoadjuvant valspodar in dogs with large B-cell lymphoma
Cited by: 0
Author(s): Daisuke Ito, Michael O. Childress, Nicola J. Mason, Amber Winter, Timothy O’Brien, Michael Henson, Antonella Borgatti, Mitzi Lewellen, Erika Krick, Janet Stewart, Sarah Lahrman, Bartek Rajwa, Milcah C. Scott, Davis Seelig, Joseph S. Koopmeiners, Stephan Ruetz, Jaime F. Modiano
Software Mentions: 2
Published: over 9 years ago