cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pntd.0005347

Dispersal of male and female Culex quinquefasciatus and Aedes albopictus mosquitoes using stable isotope enrichment
Cited by: 61
Author(s): Matthew C. I. Medeiros, Emily Cale Boothe, E. Brendan Roark, Gabriel L. Hamer
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pntd.0007570

Dramatic changes in gene expression in different forms of Crithidia fasciculata reveal potential mechanisms for insect-specific adhesion in kinetoplastid parasites
Cited by: 13
Author(s): John N. Filosa, Corbett T. Berry, Gordon Ruthel, Stephen M. Beverley, Wesley C. Warren, Chad Tomlinson, Peter J. Myler, Elizabeth A. Dudkin, Megan L. Povelones, Michael Povelones
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-020-02080-6

Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca
Cited by: 42
Author(s): Rong Fan, Zhongru Gu, Xuanmin Guang, Juan Carlos Marín, Valeria Varas, Benito A. González, Jane C. Wheeler, Yafei Hu, Erli Li, Xiaohui Sun, Xukui Yang, Chi Zhang, Wenjun Gao, Jianjun He, Kasper Munch, Russel Corbett-Detig, Mario Barbato, Shengkai Pan, Xiangjiang Zhan, Michael William Bruford, Changsheng Dong
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1006993

Fibroblast growth factor signaling is required for early somatic gonad development in zebrafish
Cited by: 53
Author(s): Dena M. Leerberg, Kōkichi Sano, Bruce W. Draper
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pgen.1002525

Mixed Effects Modeling of Proliferation Rates in Cell-Based Models: Consequence for Pharmacogenomics and Cancer
Cited by: 29
Author(s): Hae Kyung Im, Eric R. Gamazon, Amy L. Stark, R. Stephanie Huang, Nancy J. Cox, M. Eileen Dolan
Software Mentions: 2
Published: over 14 years ago

10.3390/ijms18071367

The Emerging Role of Zfp217 in Adipogenesis
Cited by: 14
Author(s): Hong Xiang, Zhuxia Zhong, Yanjie Peng, Siwen Jiang
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1008125

The evolution of hybrid fitness during speciation
Cited by: 53
Author(s): Andrius J. Dagilis, Mark Kirkpatrick, Daniel I. Bolnick
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1009082

Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations
Cited by: 14
Author(s): Yann Bourgeois, Robert P. Ruggiero, Imtiyaz Hariyani, Stéphane Boissinot
Software Mentions: 2
Published: almost 6 years ago

10.1093/gbe/evu263

Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1004438

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex
Cited by: 80
Author(s): Christine Grossen, Lukas F. Keller, Iris Biebach, Daniel Croll
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.1005096

Examining the Evolution of the Regulatory Circuit Controlling Secondary Metabolism and Development in the Fungal Genus Aspergillus
Cited by: 65
Author(s): Abigail Lind, Jennifer H. Wisecaver, Timothy D. Smith, Xuehuan Feng, Ana M. Calvo, Antonis Rokas
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms19030726

Functional Characterization of the Steroid Reductase Genes GmDET2a and GmDET2b from Glycine max
Cited by: 8
Author(s): Weige Huo, Bodi Li, Jiebing Kuang, Ping‐an He, Zhihao Xu, Jinxiang Wang
Software Mentions: 2
Published: over 8 years ago

10.1093/gbe/evab098

Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation
Cited by: 16
Author(s): Anna Tigano, Arne Jacobs, Aryn P. Wilder, Ankita Nand, Zhan Ye, Job Dekker, Nina Overgaard Therkildsen
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-015-0192-9

ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients
Cited by: 2
Author(s): Vinay Varadan, Salendra Singh, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Jill S. Barnholtz‐Sloan, Sanford D. Markowitz, Joseph E. Willis, Kishore Guda
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pgen.1007874

Allele-specific RNA imaging shows that allelic imbalances can arise in tissues through transcriptional bursting
Cited by: 26
Author(s): Orsolya Symmons, Marcello Chang, Ian A. Mellis, Jennifer M. Kalish, Jihwan Park, Katalin Suszták, Marisa S. Bartolomei, Arjun Raj
Software Mentions: 2
Published: over 7 years ago

10.1172/jci.insight.139032

Pathogenic, glycolytic PD-1+ B cells accumulate in the hypoxic RA joint
Cited by: 36
Author(s): Achilleas Floudas, Nuno Neto, Viviana Marzaioli, Kieran Murray, Barry Moran, Michael G. Monaghan, Candice Low, Ronan Mullan, Navin Rao, Vinod Krishna, Sunil Nagpal, Douglas J. Veale, Ursula Fearon
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1009017

ZNF423 patient variants, truncations, and in-frame deletions in mice define an allele-dependent range of midline brain abnormalities
Cited by: 7
Author(s): Ojas Deshpande, Raquel Z. Lara, Oliver Zhang, Dorothy Concepcion, Bruce A. Hamilton
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.4848

The global burden of HIV-1 drug resistance in the past 20 years
Cited by: 24
Author(s): Maurizio Zazzi, Hui Hu, Mattia Prosperi
Software Mentions: 2
Published: about 8 years ago

10.1172/jci.insight.146707

Hedgehog-induced PD-L1 on tumor-associated macrophages is critical for suppression of tumor-infiltrating CD8+ T cell function
Cited by: 42
Author(s): Amy J. Petty, Rui Dai, Rosa Lapalombella, Robert A. Baiocchi, Don M. Benson, Zihai Li, Xin Huang, Yiping Yang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9653

Increasing methane (CH4) emissions and altering rhizosphere microbial diversity in paddy soil by combining Chinese milk vetch and rice straw
Cited by: 7
Author(s): Qiang Ma, Jiwei Li, Muhammad Aamer, Huang Guo-qin
Software Mentions: 2
Published: about 6 years ago

10.1172/jci.insight.149217

A map of metabolic phenotypes in patients with myalgic encephalomyelitis/chronic fatigue syndrome
Cited by: 15
Author(s): Fredrik Hoel, August Hoel, Ina Katrine Nitschke Pettersen, Ingrid Gurvin Rekeland, Kristin Risa, Kine Alme, Kari Sørland, Alexander Fosså, Katarina Lien, Ingrid Herder, Hanne Thürmer, Merethe Otelie Eide Gotaas, Christoph Schäfer, Rolf K. Berge, Kristian Sommerfelt, Hans-Peter Marti, Olav Dahl, Olav Mella, Øystein Fluge, Karl Johan Tronstad
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.2529

Bacterial community diversity of the deep-sea octocoralParamuricea placomus
Cited by: 49
Author(s): Christina A. Kellogg, Steve W. Ross, Sandra Brooke
Software Mentions: 2
Published: almost 10 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11813

Aberrant expression of PROS1 correlates with human papillary thyroid cancer progression
Cited by: 4
Author(s): Jing Wang, Minxiang Lei, Zhijie Xu
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jaci.2017.08.044

Biallelic interferon regulatory factor 8 mutation: A complex immunodeficiency syndrome with dendritic cell deficiency, monocytopenia, and immune dysregulation
Cited by: 56
Author(s): Venetia Bigley, Sheetal Maisuria, Urszula Cytlak, Laura Jardine, Matthew A. Care, Kile Green, Merry Gunawan, Paul Milne, Rachel Dickinson, Sarah Wiscombe, David Parry, Rainer Döffinger, Arian Laurence, Claudia Fonseca, Oda Stoevesandt, Andrew R. Gennery, Andrew J. Cant, Reuben Tooze, A. John Simpson, Sophie Hambleton, Sinisa Savic, Gina M. Doody, Matthew Collin
Software Mentions: 2
Published: about 8 years ago

10.1007/s13361-015-1269-9

High Resolution Mass Spectrometry of Polyfluorinated Polyether-Based Formulation
Cited by: 36
Author(s): Ian Ken D. Dimzon, Xenia Trier, Tobias Frömel, Rick Helmus, Thomas P. Knepper, P. de Voogt
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms19072079

The Transcriptomic Landscape of Gastric Cancer: Insights into Epstein-Barr Virus Infected and Microsatellite Unstable Tumors
Cited by: 24
Author(s): Irene Gullo, Joana Carvalho, Diana Martins, Diana Lemos, Ana Rita Monteiro, Marta Ferreira, Kakoli Das, Patrick Tan, Carla Oliveíra, Fátima Carneiro, Patrícia Oliveira
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.10729

Increased precipitation enhances soil respiration in a semi-arid grassland on the Loess Plateau, China
Cited by: 7
Author(s): Yutao Wang, Yi Xie, Gillian L. Rapson, Hao Ma, Le Jing, Yi Zhang, Juan Zhang, Jianping Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s40104-020-0427-5

Dynamic alterations in early intestinal development, microbiota and metabolome induced by in ovo feeding of L-arginine in a layer chick model
Cited by: 24
Author(s): Dong Dai, Shu‐geng Wu, Haijun Zhang, Guang‐hai Qi, Jing Wang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12967-017-1171-2

Longitudinal analysis of serum oxylipin profile as a novel descriptor of the inflammatory response to surgery
Cited by: 14
Author(s): Arnaud M. Wolfer, Alasdair Scott, Claudia Rueb, Mathieu Gaudin, Ara Darzi, Jeremy K. Nicholson, Elaine Holmes, James Kinross
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.7740

Bark tissue transcriptome analyses of inverted Populus yunnanensis cuttings reveal the crucial role of plant hormones in response to inversion
Cited by: 4
Author(s): Anpei Zhou, Peihua Gan, Dan Zong, Fu‐Zhen Xuan, Yuanyuan Zhong, Siqi Li, Jian Yu, Chengzhong He
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms19092794

Genome-Wide Association Studies of 39 Seed Yield-Related Traits in Sesame (Sesamum indicum L.)
Cited by: 28
Author(s): Rong Zhou, Komivi Dossa, Donghua Li, Jingyin Yu, Jun You, Xin Wei, Xiurong Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1038/ja.2017.78

Insight into synergetic mechanisms of tetracycline and the selective serotonin reuptake inhibitor, sertraline, in a tetracycline-resistant strain of Escherichia coli
Cited by: 24
Author(s): Lili Li, Sofie Kromann, John Elmerdahl Olsen, Søren Wedel Svenningsen, Rikke Heidemann Olsen
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.12075

Prediction of the mechanism of miRNAs in laryngeal squamous cell carcinoma based on the miRNA-mRNA regulatory network
Cited by: 1
Author(s): Jun Ma, Xiaodong Hu, Baoqiang Dai, Qiang Wang, Hongqin Wang
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.5710

Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
Cited by: 9
Author(s): Rodrigo Gouvêa Taketani, Marta Alves Moitinho, Tim H. Mauchline, I. S. de Melo
Software Mentions: 2
Published: almost 8 years ago

10.1007/s10803-020-04465-9

Atypical Development of Attentional Control Associates with Later Adaptive Functioning, Autism and ADHD Traits
Cited by: 10
Author(s): Alexandra Hendry, Emily J. H. Jones, Rachael Bedford, Linn Andersson Konke, Jannath Begum Ali, Sven Bölte, Karin C. Brocki, Ellen Demurie, Mark H. Johnson, Mirjam K. J. Pijl, Herbert Roeyers, Tony Charman
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.013017

A novel stress-inducible CmtR-ESX3-Zn2+ regulatory pathway essential for survival of Mycobacterium bovis under oxidative stress
Cited by: 9
Author(s): Xiaohui Li, Liu Chen, Jingjing Liao, Jiechen Hui, Weihui Li, Zheng‐Guo He
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.015053

Development of a novel mammalian display system for selection of antibodies against membrane proteins
Cited by: 12
Author(s): NJ Robertson, Nancy López-Antón, Shalom A. Gurjar, Hena Khalique, Zainab A. Khalaf, Siobhan Clerkin, Vaughan R. Leydon, Richard P. Parker-Manuel, Alexander Raeside, Tom Payne, Timothy D. Jones, Len Seymour, Ryan Cawood
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-018-1728-8

Prediction and prognostic significance of BCAR3 expression in patients with multiple myeloma
Cited by: 10
Author(s): Weilong Zhang, Yuansheng Lin, Xiaoni Liu, Xue He, Ye Zhang, Wei Fu, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xiaoliang Yuan, Hongmei Jing
Software Mentions: 2
Published: over 7 years ago

10.1117/1.JBO.25.3.035002

Diffuse reflectance spectroscopy to monitor murine colorectal tumor progression and therapeutic response
Cited by: 7
Author(s): Ariel I. Mundo, Gage J. Greening, Michael J. Fahr, Lawrence N. Hale, Elizabeth A. Bullard, Narasimhan Rajaram, Timothy J. Muldoon
Software Mentions: 2
Published: over 6 years ago

10.1186/s12915-021-01070-9

An engineered genetic circuit for lactose intolerance alleviation
Cited by: 2
Author(s): Mingyue Cheng, Zhangyu Cheng, Yiyan Yu, Wangjie Liu, Ruihao Li, Zhenyi Guo, Jiyue Qin, Zhi Zeng, Dong Lin, Yufeng Mo, Chunxiu Pan, Yuanhao Liang, Jinman Li, Yigang Tong, Yunjun Yan, Yi Zhan, Kang Ning
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms19103273

Structural Analysis of Variability and Interaction of the N-terminal of the Oncogenic Effector CagA of Helicobacter pylori with Phosphatidylserine
Cited by: 3
Author(s): Cindy P. Ulloa-Guerrero, María del Pilar Delgado, Carlos Jaramillo
Software Mentions: 2
Published: almost 8 years ago

10.7150/jca.34465

High expression of CHML predicts poor prognosis of multiple myeloma
Cited by: 2
Author(s): Weilong Zhang, Ling Cao, Xiaoni Liu, Xue He, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xiaoliang Yuan, Hongmei Jing
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.2777

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
Cited by: 138
Author(s): Simon Roux, Natalie Solonenko, Dang Vinh, Bonnie T. Poulos, Sarah M. Schwenck, Dawn B. Goldsmith, Maureen L. Coleman, Mya Breitbart, Matthew B. Sullivan
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.3089

From big data to diagnosis and prognosis: gene expression signatures in liver hepatocellular carcinoma
Cited by: 30
Author(s): Hong Yang, Xin Zhang, Xiujun Cai, Dong‐Yue Wen, Zhihua Ye, Liang Liang, Lu Zhang, Hanlin Wang, Gang Chen, Zhaoyong Feng
Software Mentions: 2
Published: over 9 years ago

10.1186/s12915-019-0686-9

Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces
Cited by: 6
Author(s): Nicola B. Davidson, Natalie I Koch, Joscelyn Sarsby, Emrys A. Jones, Jane L. Hurst, Robert J. Beynon
Software Mentions: 2
Published: about 7 years ago

10.7150/jca.48979

Screening and bioinformatical analysis of differentially expressed genes in nasopharyngeal carcinoma
Cited by: 3
Author(s): Weiqian Guo, Xiaomin Zheng, Hua Liu, Xiaohai Zheng, Yangyang Zhang, Bin Sun, Zhenchao Tao, Jin Gao
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9088

Effect of predation risk and ectoparasitic louse flies on physiological stress condition of the red-tailed tropicbird (Phaethon rubricauda) from Rapa Nui and Salas & Gómez islands
Cited by: 1
Author(s): Nicolás Luna, Andrea I. Varela, Guillermo Luna‐Jorquera, Katherina Brokordt
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-017-3815-2

Intra-tumor heterogeneity in breast cancer has limited impact on transcriptomic-based molecular profiling
Cited by: 9
Author(s): Govindasamy-Muralidharan Karthik, Mattias Rantalainen, Gustav Stålhammar, John Lövrot, Ikram Ullah, Amjad Alkodsi, Ran Ma, Lena Wedlund, Johan Lindberg, Jan Frisell, Jonas Bergh, Johan Hartman
Software Mentions: 2
Published: over 8 years ago

10.1186/s12968-016-0319-1

Effects of heart valve prostheses on phase contrast flow measurements in Cardiovascular Magnetic Resonance – a phantom study
Cited by: 12
Author(s): Johanna Richau, Matthias A. Dieringer, Julius Traber, Florian von Knobelsdorff‐Brenkenhoff, Andreas Greiser, Carsten Schwenke, Jeanette Schulz‐Menger
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.10926

Identification of fibroblast activation-related genes in two acute kidney injury models
Cited by: 4
Author(s): Weiming Deng, Xuxia Wei, Zhanwen Dong, Jinhua Zhang, Zhengyu Huang, Ning Na
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7265

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
Cited by: 43
Author(s): Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh Fen Li, Benjamin Bolduc, Josué A. Rodríguez-Ramos, Emiley A. Eloe‐Fadrosh, V. I. Rich, Matthew B. Sullivan
Software Mentions: 2
Published: about 7 years ago

10.1186/s12967-018-1537-0

Clinicopathologic implication of microRNA-197 in diffuse large B cell lymphoma
Cited by: 16
Author(s): Jeyul Yang, Ji Young Jang, Yoon Kyung Jeon, Jin Ho Paik
Software Mentions: 2
Published: about 8 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10183

A 14 immune-related gene signature predicts clinical outcomes of kidney renal clear cell carcinoma
Cited by: 8
Author(s): Yong Zou, Chuan Hu
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15541

The ACE2 expression in Sertoli cells and germ cells may cause male reproductive disorder after SARS‐CoV‐2 infection
Cited by: 137
Author(s): Qiaoyan Shen, Xia Xiao, Aili Aierken, Wei Y, Xiaojie Wu, Mingzhi Liao, Jinlian Hua
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.5741

Effects of wine-capStrophariacultivation on soil nutrients and bacterial communities in forestlands of northern China
Cited by: 17
Author(s): Sai Gong, Chen Chen, Jingxian Zhu, Guang-Yao Qi, Shuxia Jiang
Software Mentions: 2
Published: almost 8 years ago

10.1111/jcmm.16547

Prognostic value of tumour microenvironment‐related genes by TCGA database in rectal cancer
Cited by: 7
Author(s): Chao Li, Tao Liu, Yi Liu, Jiantao Zhang, Didi Zuo
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16709

USP11 degrades KLF4 via its deubiquitinase activity in liver diseases
Cited by: 14
Author(s): Hee‐Young Yang, Daeui Park, Jeong-ho Ryu, Tamina Park
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20051118

Growth Factor Screening in Dystrophic Muscles Reveals PDGFB/PDGFRB-Mediated Migration of Interstitial Stem Cells
Cited by: 8
Author(s): J. Camps, Hanne Grosemans, Rik Gijsbers, Christa Maes, Maurilio Sampaolesi
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.160712

Thermally moderated firefly activity is delayed by precipitation extremes
Cited by: 9
Author(s): Sara L. Hermann, Saisi Xue, Logan Rowe, Elizabeth Davidson-Lowe, Andrew C. Myers, Bahodir Eshchanov, Christie A. Bahlai
Software Mentions: 2
Published: over 9 years ago

10.1186/s12885-019-6084-4

Immunohistochemical validation of COL3A1, GPR158 and PITHD1 as prognostic biomarkers in early-stage ovarian carcinomas
Cited by: 34
Author(s): Hanna Engqvist, Toshima Z. Parris, Anikó Kovács, Szilárd Nemes, Elisabeth Werner Rönnerman, Shahin De Lara, Jana Biermann, Karin Sundfeldt, Per Karlsson, Khalil Helou
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20061519

Wnt/β-Catenin Pathway Is Involved in Cadmium-Induced Inhibition of Osteoblast Differentiation of Bone Marrow Mesenchymal Stem Cells
Cited by: 28
Author(s): Lu Wu, Qiujing Wei, Yingjian Lv, Junchao Xue, Bo Zhang, Qiang Sun, Tian Xiao, Rui Huang, Ping Wang, Xiangyu Dai, Haibo Xia, Jun-Jie Liu, Xingfen Yang, Qizhan Liu
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.172212

Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene evolution in the Viannia subgenus
Cited by: 23
Author(s): Simone Coughlan, Alysha S. Taylor, Eoghan Feane, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.10460

Multi-year pair-bonding in Murray cod (Maccullochella peelii)
Cited by: 2
Author(s): Alan J Couch, Fiona Dyer, Mark Lintermans
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.181730

Plastic multicellular development of Myxococcus xanthus : genotype–environment interactions in a physical gradient
Cited by: 16
Author(s): Natsuko Rivera‐Yoshida, Alejandro V. Arzola, Juan A. Arias Del Angel, Alessio Franci, Michael Travisano, Ana E. Escalante, Mariana Benítez
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.190090

Larval foraging decisions in competitive heterogeneous environments accommodate diets that support egg-to-adult development in a polyphagous fly
Cited by: 10
Author(s): Juliano Morimoto, Shabnam Tarahi Tabrizi, Ida Lundbäck, Bishwo P. Mainali, Phillip W. Taylor, Fleur Ponton
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20102463

Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway
Cited by: 25
Author(s): Xiaoqiong Chen, Tao Yu, Asif Ali, Zhenhua Zhuang, Daiming Guo, Qiaoling Guo, Asad Riaz, Hongyu Zhang, Peizhou Xu, Yongxiang Liao, Jing Wang, Changhui Sun, Quanju Xiang
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.5649

Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing
Cited by: 24
Author(s): Zhifang Zhou, Guanghui Ling, Ning Ding, Zhe Xun, Ce Zhu, Hong Hua, Xiaochi Chen
Software Mentions: 2
Published: almost 8 years ago

10.1098/rsos.210140

Characterization of the RNA-interference pathway as a tool for reverse genetic analysis in the nascent phototrophic endosymbiosis, Paramecium bursaria
Cited by: 5
Author(s): Benjamin H. Jenkins, Finlay Maguire, Guy Leonard, Joshua D. Eaton, Steven West, Benjamin E. Housden, David S. Milner, Thomas A. Richards
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8160

Rediscovery of Osteocephalus vilarsi (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog
Cited by: 9
Author(s): Miquéias Ferrão, Jiří Moravec, Leandro João Carneiro de Lima Moraes, Vinícius T. de Carvalho, Marcelo Gordo, Albertina P. Lima
Software Mentions: 2
Published: over 6 years ago

10.1098/rsos.210163

Past thermal conditions affect hunting behaviour in larval antlions
Cited by: 7
Author(s): Krzysztof Miler, Marcin Czarnołęski
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.8923

Dynamic changes in intestinal microbiota in young forest musk deer during weaning
Cited by: 6
Author(s): Yimeng Li, Minghui Shi, Tianxiang Zhang, Xin Hu, Baofeng Zhang, Sheng‐Quan Xu, Jianhong Ding, Defu Hu, Shuqiang Liu
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.494

RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments
Cited by: 125
Author(s): Henning Seedorf, Sandra Kittelmann, Gemma Henderson, Peter H. Janssen
Software Mentions: 2
Published: about 12 years ago

10.7717/peerj.2910

The wild tomato speciesSolanum chilenseshows variation in pathogen resistance between geographically distinct populations
Cited by: 21
Author(s): Remco Stam, Daniela Scheikl, Aurélien Tellier
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.8176

Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: over 6 years ago

10.1007/s00572-020-01014-1

Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi
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Author(s): Natacha Bodenhausen, Gabriel Deslandes‐Hérold, Jan Waelchli, Alain Held, Marcel G. A. van der Heijden, Klaus Schlaeppi
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.17295

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis
Cited by: 22
Author(s): Shuofeng Hu, Hanyu Yuan, Zongcheng Li, Jian Zhang, Jiaqi Wu, Yaowen Chen, Qiang Shi, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.17312

Sequencing of cancer cell subpopulations identifies micrometastases in a bladder cancer patient
Cited by: 7
Author(s): Kris Prado, Kelvin X. Zhang, Matteo Pellegrini, Arnold I. Chin
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.17098

Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
Cited by: 46
Author(s): Rongjiang Tang, Wenjie Chen, Rong‐Quan He, Jiang‐Hui Zeng, Liang Liang, Shikang Li, Jie Ma, Dan Luo, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.1186/1742-4690-10-160

Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
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Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: over 12 years ago

10.1186/s12977-019-0500-3

HTLV-1 contains a high CG dinucleotide content and is susceptible to the host antiviral protein ZAP
Cited by: 18
Author(s): Paola Miyazato, Misaki Matsuo, Benjy J.Y. Tan, Michiyo Tokunaga, Hiroo Katsuya, Saiful Islam, Jumpei Ito, Yuji Murakawa, Yorifumi Satou
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.18058

Clinical roles of the aberrantly expressed lncRNAs in lung squamous cell carcinoma: a study based on RNA-sequencing and microarray data mining
Cited by: 70
Author(s): Wenjie Chen, Rongjiang Tang, Rong‐Quan He, Dong‐Yao Li, Liang Liang, Jiang‐Hui Zeng, Xiaohua Hu, Jie Ma, Shikang Li, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.1590/1518-8345.2601.3031

Predictors of well-being and quality of life in men who underwent radical prostatectomy: longitudinal study
Cited by: 5
Author(s): Adilson Edson Romanzini, M. Graça Pereira, Caroline Guilherme, Adauto José Cologna, Emı́lia Campos de Carvalho
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.omtn.2020.10.043

Endometrial cell-derived small extracellular vesicle miR-100-5p promotes functions of trophoblast during embryo implantation
Cited by: 26
Author(s): Qiang Tan, Shuang Shi, Jingjie Liang, Dingren Cao, Shaoyu Wang, Zhengguang Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-021-00459-y

Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-021-00462-3

Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project
Cited by: 12
Author(s): Jiaqi Lu, Chunchao Wang, Dan Zeng, Jianmin Li, Xiaorong Shi, Yu Shi, Yongli Zhou
Software Mentions: 2
Published: over 5 years ago

10.1016/j.omtm.2020.04.017

Novel Non-integrating DNA Nano-S/MAR Vectors Restore Gene Function in Isogenic Patient-Derived Pancreatic Tumor Models
Cited by: 15
Author(s): Matthias Bozza, Edward W. Green, Elisa Espinet, Alice De Roia, Corinna Klein, Vanessa Vogel, Rienk Offringa, James A. Williams, Martin R. Sprick, Richard P. Harbottle
Software Mentions: 2
Published: about 6 years ago

10.1016/j.omtm.2018.06.006

Prevalence of Pre-existing Antibodies to CRISPR-Associated Nuclease Cas9 in the USA Population
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Author(s): Vijaya L. Simhadri, Joseph R. McGill, Shane McMahon, Junxia Wang, Haiyan Jiang, Zuben E. Sauna
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13049-016-0315-3

Prehospital treatment with continuous positive airway pressure in patients with acute respiratory failure: a regional observational study
Cited by: 16
Author(s): Vibe Maria Laden Nielsen, Jacob Madsen, Anette Aasen, Anne Pernille Toft-Petersen, Kenneth Lübcke, Bodil Steen Rasmussen, Erika Frischknecht Christensen
Software Mentions: 2
Published: almost 10 years ago

10.1126/sciadv.aau9253

Most sleep does not serve a vital function: Evidence from Drosophila melanogaster
Cited by: 47
Author(s): Quentin Geissmann, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 2
Published: over 7 years ago

10.15252/msb.20177548

Pervasive coexpression of spatially proximal genes is buffered at the protein level
Cited by: 78
Author(s): Georg Kustatscher, Piotr Grabowski, Juri Rappsilber
Software Mentions: 2
Published: about 9 years ago

10.1126/sciadv.abg9614

A flexible multiplexed immunosensor for point-of-care in situ wound monitoring
Cited by: 77
Author(s): Yu-Ji Gao, Dat T. Nguyen, Trifanny Yeo, Su Bin Lim, Wei Xian Tan, Leigh Madden, Lin Jin, Ji Yong Kenan Long, Fazila Aloweni, Yi Jia Angela Liew, Mandy Li Ling Tan, Shin Yuh Ang, D Sivagame, O Maniya, Ibrahim Abdelwahab, Kian Ping Loh, Chia-Hung Chen, David L. Becker, David I. Leavesley, John S. Ho, Chwee Teck Lim
Software Mentions: 2
Published: over 5 years ago

10.1126/sciadv.abg0108

Linking the FTO obesity rs1421085 variant circuitry to cellular, metabolic, and organismal phenotypes in vivo
Cited by: 18
Author(s): Samantha Laber, Sara Forcisi, Liz Bentley, Julia Petzold, Franco Moritz, Kirill S. Smirnov, Loubna Al Sadat, Iain Williamson, Sophie Strobel, Thomas Agnew, Shahana Sengupta, T L Nicol, Harald Grallert, Margit Heier, Julius Honecker, Joffrey Mianné, Lydia Teboul, Rebecca Dumbell, Helen Long, Michelle Simon, Cecilia M. Lindgren, Wendy A. Bickmore, Hans Hauner, Philippe Schmitt‐Kopplin, Melina Claussnitzer, Roger D. Cox
Software Mentions: 2
Published: about 5 years ago

10.1126/sciadv.abg4081

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: about 5 years ago

10.15252/msb.20145497

Deciphering preferential interactions within supramolecular protein complexes: the proteasome case
Cited by: 66
Author(s): Bertrand Fabre, Thomas Lambour, Luc Garrigues, François Amalríc, Nathalie Vigneron, Thomas Menneteau, Alexandre Stella, Bernard Monsarrat, Benoı̂t Van den Eynde, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet
Software Mentions: 2
Published: over 11 years ago

10.1038/sdata.2018.81

A multi-phenotypic imaging screen to identify bacterial effectors by exogenous expression in a HeLa cell line
Cited by: 3
Author(s): Adam Collins, Alan Huett
Software Mentions: 2
Published: over 8 years ago

10.1186/s12885-020-6713-y

Ubiquitin-specific protease-44 inhibits the proliferation and migration of cells via inhibition of JNK pathway in clear cell renal cell carcinoma
Cited by: 14
Author(s): Jiangqiao Zhou, Tianyu Wang, Tao Qiu, Zhongbao Chen, Xiaofen Ma, Long Zhang, Jilin Zou
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.20209810

Identifying modules of cooperating cancer drivers
Cited by: 9
Author(s): Michael Klein, Vincent L. Cannataro, Jeffrey P. Townsend, Scott Newman, David F. Stern, Hongyu Zhao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41597-020-0368-z

Reference values for resting and post exercise hemodynamic parameters in a 6–18 year old population
Cited by: 1
Author(s): Katalin Havasi, Zoltán Maróti, Andrea Emese Jakab, István Raskó, Tibor Kalmár, Csaba Bereczki
Software Mentions: 2
Published: over 6 years ago

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