cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2020.00120

Macrophages/Microglia Represent the Major Source of Indolamine 2,3-Dioxygenase Expression in Melanoma Metastases of the Brain
Cited by: 25
Author(s): Dayana Herrera-Rios, Sadaf S. Mughal, Sarah Teuber‐Hanselmann, Daniela Pierscianek, Antje Sucker, Philipp Jansen, Tobias Schimming, Joachim Klode, Julia Reifenberger, Jörg Felsberg, Kathy Keyvani, Benedikt Brors, Ulrich Sure, Guido Reifenberger, Dirk Schadendorf, Iris Helfrich
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2018.02838

Butyrate Produced by Commensal Bacteria Down-Regulates Indolamine 2,3-Dioxygenase 1 (IDO-1) Expression via a Dual Mechanism in Human Intestinal Epithelial Cells
Cited by: 64
Author(s): Camille Martin-Gallausiaux, Pierre Larraufie, Anne Jarry, Fabienne Béguet-Crespel, Ludovica Marinelli, Florence Ledue, Frank Reimann, Hervé M. Blottière, Nicolas Lapaque
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2020.01924

Cyberlindnera jadinii Yeast as a Protein Source for Weaned Piglets—Impact on Immune Response and Gut Microbiota
Cited by: 2
Author(s): Leidy Lagos, Alexander Kashulin Bekkelund, Adrijana Škugor, Ragnhild Ånestad, Caroline Piercey Åkesson, Charles McL. Press, Margareth Øverland
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.702037

DNA Methylation-Based Interferon Scores Associate With Sub-Phenotypes in Primary Sjögren’s Syndrome
Cited by: 10
Author(s): Juliana Imgenberg‐Kreuz, Johanna K. Sandling, Katrine Brække Norheim, Svein Joar Auglænd Johnsen, Roald Omdal, Ann‐Christine Syvänen, Elisabet Svenungsson, Lars Rönnblom, Maija‐Leena Eloranta, Gunnel Nordmark
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2020.581070

Plasma Proteome Responses in Salmonid Fish Following Immunization
Cited by: 8
Author(s): Fiona K. Bakke, Milena Mira Monte, David Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.670070

ImmuCellDB: An Indicative Database of Immune Cell Composition From Different Tissues and Disease Conditions in Mouse and Human
Cited by: 2
Author(s): Ziyi Chen, Na Han, Aiping Wu
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2014.00678

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes
Cited by: 220
Author(s): Austin G. Davis-Richardson, Alexandria N. Ardissone, Raquel Dias, Ville Simell, Michael T. Leonard, Kaisa Kemppainen, Jennifer C. Drew, Desmond Schatz, Mark A. Atkinson, Bryan Kolaczkowski, Jorma Ilonen, Mikael Knip, Jorma Toppari, Noora Nurminen, Heikki Hyöty, Riitta Veijola, Tuula Simell, Juha Mykkänen, Olli Simell, Eric W. Triplett
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2017.00490

Population Structure of Sclerotinia subarctica and Sclerotinia sclerotiorum in England, Scotland and Norway
Cited by: 26
Author(s): John P. Clarkson, Rachel Warmington, Paul Walley, Matthew Denton‐Giles, Martin J. Barbetti, Guro Brodal, Berit Nordskog
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.619632

Microbial Communities in Flexible Biomethanation of Hydrogen Are Functionally Resilient Upon Starvation
Cited by: 12
Author(s): Washington Logroño, Denny Popp, Marcell Nikolausz, Paul Kluge, Hauke Harms, Sabine Kleinsteuber
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.03008

Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields
Cited by: 12
Author(s): Jan Vander Roost, Frida Lise Daae, Ida Helene Steen, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.03152

Fungal Community as a Bioindicator to Reflect Anthropogenic Activities in a River Ecosystem
Cited by: 28
Author(s): Yaohui Bai, Qiaojuan Wang, Kailingli Liao, Zhiyu Jian, Chen Zhao, Jiuhui Qu
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.649969

BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements
Cited by: 29
Author(s): Xiaoting Hua, Qian Liang, Min Deng, Jintao He, Meixia Wang, Wenjie Hong, Jun Wu, Boxun Lu, Sebastian Leptihn, Yunsong Yu, Huan Chen
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.667790

Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit
Cited by: 8
Author(s): Chloe Myers, Charlotte J. Houldcroft, Sunando Roy, Ben Margetts, Timothy Best, Cristina Venturini, José Afonso Guerra-Assunção, Charlotte A. Williams, Rachel Williams, Helen Dunn, John C. Hartley, Kanchan Rao, Kathryn J. Rolfe, Judith Breuer
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2016.02078

Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea
Cited by: 23
Author(s): Markus V. Lindh, Johanna Sjöstedt, Michèle Casini, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.683234

Effects of Different Treatment of Fecal Microbiota Transplantation Techniques on Treatment of Ulcerative Colitis in Rats
Cited by: 7
Author(s): Fengshuo Zhu, Yifan Ke, Yiting Luo, Jiaqian Wu, Pei Chen Wu, Fuyin Ma, Yingchao Liu
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.00716

Compositional and Quantitative Insights Into Bacterial and Archaeal Communities of South Pacific Deep-Sea Sponges (Demospongiae and Hexactinellida)
Cited by: 35
Author(s): Georg Steinert, Kathrin Busch, Kristina Bayer, Sahar Kodami, Pedro Martínez Arbizu, Michelle Kelly, Sadie Mills, Dirk Erpenbeck, Martin Dohrmann, Gert Wörheide, Ute Hentschel, Peter J. Schupp
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.672656

The Abundance of the nifH Gene Became Higher and the nifH-Containing Diazotrophic Bacterial Communities Changed During Primary Succession in the Hailuogou Glacier Chronosequence, China
Cited by: 3
Author(s): Yingyan Wang, Yulan Chen, Qinyu Xue, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhang, Petri Penttinen, Yunfu Gu
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00045

Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes (mpeBA and cpeBA)
Cited by: 45
Author(s): Patricia Sánchez‐Baracaldo, Giorgio Bianchini, Andrea Di Cesare, Cristiana Callieri, Nathan Chrismas
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.542623

Effect of the AM Fungus Sieverdingia tortuosa on Common Vetch Responses to an Anthracnose Pathogen
Cited by: 2
Author(s): Tingting Ding, Weizhen Zhang, Yingde Li, Taizhong Duan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02260

Fecal Microbiome Characteristics and the Resistome Associated With Acquisition of Multidrug-Resistant Organisms Among Elderly Subjects
Cited by: 10
Author(s): Rafael Araos, Thomas Battaglia, Juan A. Ugalde, Marcelo Rojas-Herrera, Martin J. Blaser, Erika M. C. D’Agata
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.01255

In Silico Genome-Wide Analysis Reveals the Potential Links Between Core Genome of Acidithiobacillus thiooxidans and Its Autotrophic Lifestyle
Cited by: 17
Author(s): Xian Zhang, Zhenghua Liu, Guanyun Wei, Fei Yang, Xueduan Liu
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.02845

Transcriptional Changes on Blight Fruiting Body of Flammulina velutipes Caused by Two New Bacterial Pathogens
Cited by: 8
Author(s): Qing Wang, Mengpei Guo, Ruiping Xu, Jingcheng Zhang, Yinbing Bian, Yang Xiao
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01492

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient
Cited by: 30
Author(s): Jeffrey A. Kimbrel, Nicholas R. Ballor, Yu Wei Wu, Maude M. David, Terry C. Hazen, Blake A. Simmons, Steven W. Singer, Janet Jansson
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2017.01696

From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean
Cited by: 44
Author(s): Markus V. Lindh, Brianne M. Maillot, Christine N. Shulse, Andrew J. Gooday, Diva J. Amon, Craig R. Smith, Matthew J. Church
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00668

High-Alpine Permafrost and Active-Layer Soil Microbiomes Differ in Their Response to Elevated Temperatures
Cited by: 34
Author(s): Petra Luláková, Carla Perez-Mon, Hana Šantrůčková, Joel Ruethi, Beat Frey
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.684386

Variation in Soil Microbial Communities Along an Elevational Gradient in Alpine Meadows of the Qilian Mountains, China
Cited by: 10
Author(s): Yulong Duan, Jing Lian, Lilong Wang, Xuyang Wang, Yongqing Luo, Wanfu Wang, Fasi Wu, Jianhua Zhao, Yun Ding, Jun Ma, Yulin Li, Yuqiang Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00581

Rhizobacterial Community Assembly Patterns Vary Between Crop Species
Cited by: 39
Author(s): Andrew Matthews, Sarah Pierce, Helen Hipperson, Ben Raymond
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.582655

Geographical Variability of Mineral Elements and Stability of Restrictive Mineral Elements in Terrestrial Cyanobacteria Across Gradients of Climate, Soil, and Atmospheric Wet Deposition Mineral Concentration
Cited by: 2
Author(s): Weibo Wang, Hua Li, René Guénon, Yuyi Yang, Shijun Xiao, Xiaoli Cheng, Quanfa Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.631444

PfAP2-G2 Is Associated to Production and Maturation of Gametocytes in Plasmodium falciparum via Regulating the Expression of PfMDV-1
Cited by: 12
Author(s): Yaozheng Xu, Dan Qiao, Yang Wen, Yifei Bi, Yuxi Chen, Zhenghui Huang, Liwang Cui, Jian Guo, Yaming Cao
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.695445

Effects of Dietary Energy Levels on Rumen Fermentation, Gastrointestinal Tract Histology, and Bacterial Community Diversity in Fattening Male Hu Lambs
Cited by: 12
Author(s): Qiye Wang, Yutong Zeng, Xiangfang Zeng, Xin Wang, Yancan Wang, Chunpeng Dai, Jianzhong Li, Pengfei Huang, Jing Huang, Tarique Hussain, Mingzhi Zhu, Huansheng Yang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmolb.2021.682134

A Comparison of Serum and Plasma Blood Collection Tubes for the Integration of Epidemiological and Metabolomics Data
Cited by: 29
Author(s): Jennie Sotelo-Orozco, Shin-Yu Chen, Irva Hertz‐Picciotto, Carolyn M. Slupsky
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.621954

Effect of Grafting on Viral Resistance of Non-transgenic Plum Scion Combined With Transgenic PPV-Resistant Rootstock
Cited by: 9
Author(s): Tatiana N. Sidorova, Dmitry Miroshnichenko, Ilya Kirov, Alexander Pushin, Sergey Dolgov
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.587528

Phenotypic Selection on Flower Color and Floral Display Size by Three Bee Species
Cited by: 12
Author(s): Johanne Brunet, Andrew J Flick, Austin A. Bauer
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.562001

Functional Allium fistulosum Centromeres Comprise Arrays of a Long Satellite Repeat, Insertions of Retrotransposons and Chloroplast DNA
Cited by: 5
Author(s): Ilya Kirov, Sergey Odintsov, Murad Omarov, Sofya Gvaramiya, Pavel Merkulov, Maxim Dudnikov, Aleksey Ermolaev, Katrijn Van Laere, A. A. Soloviev, Ludmila Khrustaleva
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.665745

Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-β-Glucan and Starch Contents in Rice Whole Grain
Cited by: 5
Author(s): Rahele Panahabadi, Asadollah Ahmadikhah, Lauren S. McKee, Pär K. Ingvarsson, Naser Farrokhi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.687434

Evaluating the Aqueous Phase From Hydrothermal Carbonization of Cow Manure Digestate as Possible Fertilizer Solution for Plant Growth
Cited by: 15
Author(s): Silvia Celletti, Maximilian Lanz, Alex Bergamo, Vittoria Benedetti, Daniele Basso, Marco Baratieri, Stefano Cesco, Tanja Mimmo
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00472

Flavor-Related Quality Attributes of Ripe Tomatoes Are Not Significantly Affected Under Two Common Household Conditions
Cited by: 14
Author(s): Larissa Kanski, Marcel Naumann, Elke Pawelzik
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2019.00234

The Rpv3-3 Haplotype and Stilbenoid Induction Mediate Downy Mildew Resistance in a Grapevine Interspecific Population
Cited by: 42
Author(s): S. Vezzulli, G. Malacarne, Domenico Masuero, A. Vecchione, C. Dolzani, Vadim V. Goremykin, Zeraye Mehari Haile, Elisa Banchi, Riccardo Velasco, M. Stefanini, Urška Vrhovšek, L. Zulini, Pietro Franceschi, C. Moser
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.656657

Identification of Small RNAs During High Light Acclimation in Arabidopsis thaliana
Cited by: 10
Author(s): Bhavika Tiwari, Kristin Habermann, Muhammad Arif, Oguz Top, Wolfgang Frank
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.596000

Nutraceutical Profiles of Two Hydroponically Grown Sweet Basil Cultivars as Affected by the Composition of the Nutrient Solution and the Inoculation With Azospirillum brasilense
Cited by: 16
Author(s): Šimun Kolega, Begoña Miras-Moreno, Valentina Buffagni, Luigi Lucini, Fabio Valentinuzzi, Mauro Maver, Tanja Mimmo, Marco Trevisan, Youry Pii, Stefano Cesco
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.699486

Genome-Wide Association Study of Vascular Bundle-Related Traits in Maize Stalk
Cited by: 3
Author(s): Yunxiao Zheng, Peng Hou, Linghua Zhu, Weibin Song, Lei Han, Yaqun Huang, Hong Wang, Jian-Wei Guo
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00813

Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
Cited by: 16
Author(s): Fabian B. Haas, Noe Fernandez‐Pozo, Rabea Meyberg, Pierre‐François Perroud, Marco Göttig, Nora Stingl, Denis Saint-Marcoux, Jane A. Langdale, Stefan A. Rensing
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2012.00182

Conflict between Intrinsic Leaf Asymmetry and Phyllotaxis in the Resupinate Leaves of Alstroemeria psittacina
Cited by: 22
Author(s): Daniel H. Chitwood, Dan Naylor, Paradee Thammapichai, Axelle C. S. Weeger, Lauren R. Headland, Neelima Sinha
Software Mentions: 2
Published: over 14 years ago

10.3389/fpls.2017.02106

Maize Yield and Planting Date Relationship: A Synthesis-Analysis for US High-Yielding Contest-Winner and Field Research Data
Cited by: 35
Author(s): Nguyen Viet Long, Yared Assefa, Raíssa Schwalbert, Ignacio A. Ciampitti
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.00960

Redundant and Diversified Roles Among Selected Arabidopsis thaliana EXO70 Paralogs During Biotic Stress Responses
Cited by: 11
Author(s): Tamara Pečenková, Andrea Potocká, Martin Potocký, Jitka Ortmannová, Matěj Drs, Edita Janková Drdová, Přemysl Pejchar, Lukáš Synek, Hana Soukupová, Viktor Žárský, Fatima Cvrčková
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2020.594681

UV-B Induced Flavonoids Contribute to Reduced Biotrophic Disease Susceptibility in Lettuce Seedlings
Cited by: 13
Author(s): Emily R McLay, Ana Clara Pontaroli, Jason J. Wargent
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.630175

Comparing a Mixed Model Approach to Traditional Stability Estimators for Mapping Genotype by Environment Interactions and Yield Stability in Soybean [Glycine max (L.) Merr.]
Cited by: 4
Author(s): Mary Happ, George L. Graef, Haichuan Wang, Réka Howard, Luis Posadas, David L. Hyten
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.01142

Molecular Mechanisms behind the Physiological Resistance to Intense Transient Warming in an Iconic Marine Plant
Cited by: 47
Author(s): Lázaro Marín-Guirao, Laura Entrambasaguas, Emanuela Dattolo, Juan Manuel García Ruiz, Gabriele Procaccini
Software Mentions: 2
Published: about 9 years ago

10.3390/genes12081211

Expanding the Search for Sperm Transmission Elements in the Mitochondrial Genomes of Bivalve Mollusks
Cited by: 3
Author(s): Donald T. Stewart, Brent M. Robicheau, Noor Youssef, Manuel A. Garrido-Ramos, Emily Chase, Sophie Breton
Software Mentions: 2
Published: about 5 years ago

10.1590/1678-4685-GMB-2018-0140

Gene pool sharing and genetic bottleneck effects in subpopulations of Eschweilera ovata (Cambess.) Mart. ex Miers (Lecythidaceae) in the Atlantic Forest of southern Bahia, Brazil
Cited by: 3
Author(s): Alesandro Souza Santos, Daniela B. Borges, Caio Vinicius Vivas, Cássio van den Berg, Polliana Silva Rodrigues, Roberto Tarazi, Fernanda Amato Gaiotto
Software Mentions: 2
Published: almost 7 years ago

10.1590/1678-4685-GMB-2018-0235

Genome-wide identification and characterization of R2R3-MYB genes in Medicago truncatula
Cited by: 15
Author(s): Wei Li, Ying Liu, Jianfeng Zhao, Xin Zhen, Changhong Guo, Yongjun Shu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12711-016-0200-6

Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression
Cited by: 18
Author(s): Beatrix Bicskei, John B. Taggart, Kevin A. Glover, James E. Bron
Software Mentions: 2
Published: over 10 years ago

10.1186/s12711-021-00613-6

Assessing the genetic background and genomic relatedness of red cattle populations originating from Northern Europe
Cited by: 12
Author(s): Christin Schmidtmann, Anna Amanda Schönherz, Bernt Guldbrandtsen, Jovana Marjanovic, M.P.L. Calus, Dirk Hinrichs, Georg Thaller
Software Mentions: 2
Published: over 5 years ago

10.1534/genetics.116.196964

A Bibliometric History of the JournalGENETICS
Cited by: 5
Author(s): Natalie Telis, Benjamin V. Lehmann, Marcus W. Feldman, Jonathan K. Pritchard
Software Mentions: 2
Published: over 9 years ago

10.1534/genetics.120.303378

Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes
Cited by: 12
Author(s): Riddhiman K. Garge, Jon M Laurent, Aashiq H. Kachroo, Edward M. Marcotte
Software Mentions: 2
Published: about 6 years ago

10.1186/gb-2010-11-10-r102

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
Cited by: 39
Author(s): Gregory P Harhay, Timothy P. L. Smith, L. J. Alexander, Christian Haudenschild, J. W. Keele, Lakshmi K. Matukumalli, Steven G. Schroeder, Curtis P. Van Tassell, Cathy Gresham, Susan M. Bridges, Shane C. Burgess, Tad S. Sonstegard
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13059-014-0469-0

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes
Cited by: 137
Author(s): Adam Blattler, Lijing Yao, Heather Witt, Yu Guo, Charles M. Nicolet, Benjamin P. Berman, Peggy J. Farnham
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13059-016-0879-2

Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Cited by: 174
Author(s): Holger Heyn, Enrique Vidal, Humberto J. Ferreira, Miguel Vizoso, Sergi Sayols, Antonio Gómez, Sebastian Morán, Raquel Boqué-Sastre, Sònia Guil, Anna Martínez-Cardús, Charles Y. Lin, Romina Royo, José Vicente Sánchez-Mut, Ramón Martínez, Marta Gut, David Torrents, Modesto Orozco, Richard A. Young, Manel Esteller
Software Mentions: 2
Published: over 10 years ago

10.1186/s13059-016-1130-x

Insights into the design and interpretation of iCLIP experiments
Cited by: 70
Author(s): Nejc Haberman, Ina Huppertz, Jan Attig, Julian König, Zhen Wang, Christian Hauer, Matthias W. Hentze, Andreas E. Kulozik, Hervé Le Hir, Tomaž Curk, Christopher R. Sibley, Kathi Zarnack, Jernej Ule
Software Mentions: 2
Published: over 9 years ago

10.1186/s13059-018-1507-0

Cancer expression quantitative trait loci (eQTLs) can be determined from heterogeneous tumor gene expression data by modeling variation in tumor purity
Cited by: 25
Author(s): Paul Geeleher, Aritro Nath, Fan Wang, Zhenyu Zhang, Alvaro N. Barbeira, Jessica Fessler, Robert L. Grossman, Cathal Seoighe, R. Stephanie Huang
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13059-019-1765-5

Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters
Cited by: 41
Author(s): Cristian Crisan, Aroon T. Chande, Kenneth C. Williams, Vishnu Raghuram, Lavanya Rishishwar, Gabi Steinbach, Samit S. Watve, Peter Yunker, I. King Jordan, Brian K. Hammer
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-020-02080-6

Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca
Cited by: 42
Author(s): Rong Fan, Zhongru Gu, Xuanmin Guang, Juan Carlos Marín, Valeria Varas, Benito A. González, Jane C. Wheeler, Yafei Hu, Erli Li, Xiaohui Sun, Xukui Yang, Chi Zhang, Wenjun Gao, Jianjun He, Kasper Munch, Russel Corbett-Detig, Mario Barbato, Shengkai Pan, Xiangjiang Zhan, Michael William Bruford, Changsheng Dong
Software Mentions: 2
Published: about 6 years ago

10.1093/gbe/evu263

Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: over 11 years ago

10.1093/gbe/evab098

Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation
Cited by: 16
Author(s): Anna Tigano, Arne Jacobs, Aryn P. Wilder, Ankita Nand, Zhan Ye, Job Dekker, Nina Overgaard Therkildsen
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-015-0192-9

ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients
Cited by: 2
Author(s): Vinay Varadan, Salendra Singh, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Jill S. Barnholtz‐Sloan, Sanford D. Markowitz, Joseph E. Willis, Kishore Guda
Software Mentions: 2
Published: about 11 years ago

10.1007/s10886-020-01221-2

Composition of Strawberry Floral Volatiles and their Effects on Behavior of Strawberry Blossom Weevil, Anthonomus rubi
Cited by: 11
Author(s): Raimondas Mozūraitis, David R. Hall, Nina Trandem, Baiba Ralle, Kalle Tunström, Lene Sigsgaard, Catherine Baroffio, Michelle Fountain, J. V. Cross, Atle Wibe, Anna‐Karin Borg‐Karlson
Software Mentions: 2
Published: almost 6 years ago

10.1186/1758-2946-6-11

On the validity versus utility of activity landscapes: are all activity cliffs statistically significant?
Cited by: 9
Author(s): Rajarshi Guha, José L. Medina-Franco
Software Mentions: 2
Published: over 12 years ago

10.1172/JCI128865

Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization
Cited by: 33
Author(s): Simon P. Jochems, Karin de Ruiter, Carla Solórzano, Astrid Voskamp, Elena Mitsi, Elissavet Nikolaou, Beatriz F. Carniel, Sherin Pojar, Esther L. German, Jesús Reiné, Alessandra Soares‐Schanoski, Helen Hill, Rachel Robinson, Angela Hyder-Wright, Caroline M. Weight, Pascal F. Durrenberger, Robert S. Heyderman, Stephen B. Gordon, Hermelijn H. Smits, Britta C. Urban, Jamie Rylance, Andrea Collins, Mark D. Wilkie, L Lazarova, Samuel Leong, Maria Yazdanbakhsh, Daniela M. Ferreira
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm8010111

Colorectal Cancer Prognosis Is Not Associated with BRAF and KRAS Mutations-A STROBE Compliant Study
Cited by: 12
Author(s): Joon Hyop Lee, Ji-Young Ahn, Won Seo Park, Eun Kyung Choe, Eun Young Kim, Rumi Shin, Seung Chul Heo, Sua Jung, Kwangsoo Kim, Young Jun Chai, Han‐Jung Chae
Software Mentions: 2
Published: over 7 years ago

10.3390/jcm8101723

Monitoring and Determining Mitochondrial Network Parameters in Live Lung Cancer Cells
Cited by: 6
Author(s): Tamara Mirzapoiazova, Haiqing Li, Anusha Nathan, Saumya Srivstava, Mohd W. Nasser, Frances E. Lennon, Brian Armstrong, Isa Mambetsariev, Peiguo Chu, Srisairam Achuthan, Surinder K. Batra, Prakash Kulkarni, Ravi Salgia
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm9061741

Implications of Hereditary Origin on the Immune Phenotype of Mismatch Repair-Deficient Cancers: Systematic Literature Review
Cited by: 21
Author(s): Lena Bohaumilitzky, Magnus von Knebel Doeberitz, Matthias Kloor, Aysel Ahadova
Software Mentions: 2
Published: about 6 years ago

10.3390/jcm9082515

Effects of Time-Interval since Blood Draw and of Anticoagulation on Platelet Testing (Count, Indices and Impedance Aggregometry): A Systematic Study with Blood from Healthy Volunteers
Cited by: 15
Author(s): Michaël Hardy, Sarah Lessire, Sultan Kasikci, Justine Baudar, Maïté Guldenpfennig, Adrien Collard, Jean‐Michel Dogné, Bernard Châtelain, Hugues Jacqmin, Thomas Lecompte, François Mullier
Software Mentions: 2
Published: about 6 years ago

10.3390/jcm9092725

Survivorship in Colorectal Cancer: A Cohort Study of the Patterns and Documented Content of Follow-Up Visits
Cited by: 3
Author(s): Victoria Garwood, Karolina Lisy, Michael Jefford
Software Mentions: 2
Published: almost 6 years ago

10.3390/jcm9092945

Microbial Analysis of Saliva to Identify Oral Diseases Using a Point-of-Care Compatible qPCR Assay
Cited by: 13
Author(s): Pune Nina Paqué, Christopher Herz, Joël S Jenzer, Daniel B. Wiedemeier, Thomas Attin, Nagihan Bostancı, Georgios N. Belibasakis, Kai Bao, Philipp Körner, Tanja Fritz, Julia Prinz, Patrick R. Schmidlin, Thomas Thurnheer, Florian J Wegehaupt, Konstantinos Mitsakakis, Johannes R. Peham
Software Mentions: 2
Published: almost 6 years ago

10.3390/jcm10030445

T Cell Peptides Derived from Invasive Stages of Schistosoma mansoni as Potential Schistosomiasis Vaccine
Cited by: 0
Author(s): Julio López‐Abán, Belén Vicente, Elías Kabbas-Piñango, Juan Hernández-Goenaga, Javier Sánchez-Montejo, María Aguiriano, Esther del Olmo, Magnolia Vanegas, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm10071542

Relationship between Cardiopulmonary, Mitochondrial and Autonomic Nervous System Function Improvement after an Individualised Activity Programme upon Chronic Fatigue Syndrome Patients
Cited by: 9
Author(s): Sławomir Kujawski, Jo Cossington, Joanna Słomko, Monika Zawadka‐Kunikowska, Małgorzata Tafil-Klawe, Jacek J. Klawe, Katarzyna Buszko, Djordje G. Jakovljevic, Mariusz Kozakiewicz, Karl Morten, Helen Dawes, James Strong, Modra Murovska, Jessica Van Oosterwijck, Fernando Estévez‐López, Julia L. Newton, Lynette Hodges, Paweł Zalewski, Cfs
Software Mentions: 2
Published: over 5 years ago

10.1128/JCM.02070-19

Genomic Epidemiology and Evolution of Diverse Lineages of Clinical Campylobacter jejuni Cocirculating in New Hampshire, USA, 2017
Cited by: 5
Author(s): Cooper J. Park, Jinfeng Li, Xinglu Zhang, Fei Gao, Christopher S. Benton, Cheryl P. Andam
Software Mentions: 2
Published: about 6 years ago

10.1128/JCM.00941-20

Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho
Cited by: 455
Author(s): Andrew Bryan, Gregory Pepper, Mark H. Wener, Susan L. Fink, Chihiro Morishima, Anu Chaudhary, Keith R. Jerome, Patrick C. Mathias, Alexander L. Greninger
Software Mentions: 2
Published: about 6 years ago

10.1080/10618600.2019.1654880

Scalable Bayesian Inference for Coupled Hidden Markov and Semi-Markov Models
Cited by: 18
Author(s): Panayiota Touloupou, Bärbel Finkenstädt, Simon E. F. Spencer
Software Mentions: 2
Published: almost 7 years ago

10.1111/jeb.13735

Oceanic dispersal barriers in a holoplanktonic gastropod
Cited by: 12
Author(s): Le Qin Choo, Thijs M.P. Bal, Erica Goetze, Katja T. C. A. Peijnenburg
Software Mentions: 2
Published: almost 6 years ago

10.1093/jxb/erab083

Mythimna separata herbivory primes maize resistance in systemic leaves
Cited by: 9
Author(s): Saif ul Malook, Yuxing Xu, Jinfeng Qi, Jing Li, Lei Wang, Jianqiang Wu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1004775

Bacterial Cooperation Causes Systematic Errors in Pathogen Risk Assessment due to the Failure of the Independent Action Hypothesis
Cited by: 26
Author(s): Daniel M. Cornforth, Andrew Matthews, Sam P. Brown, Ben Raymond
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1004967

A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT
Cited by: 51
Author(s): Pengfei Ding, Kirsty A. McFarland, Sun Jin, Grace Tong, Bo Duan, Ally Yang, Timothy R. Hughes, Jun Liu, Simon L. Dove, William Wiley Navarre, Bin Xia
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.ppat.1005178

Trans-generational Immune Priming Protects the Eggs Only against Gram-Positive Bacteria in the Mealworm Beetle
Cited by: 56
Author(s): Aurore Dubuffet, Caroline Zanchi, Gwendoline Boutet, Jérôme Moreau, Maria Teixeira, Yannick Moret
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1006815

The Wolbachia strain wAu provides highly efficient virus transmission blocking in Aedes aegypti
Cited by: 158
Author(s): Thomas H. Ant, Christie S. Herd, Vincent Geoghegan, Ary A. Hoffmann, Steven P. Sinkins
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1006999

Varicella zoster virus productively infects human natural killer cells and manipulates phenotype
Cited by: 40
Author(s): Tessa Mollie Campbell, Brian P. McSharry, Megan Steain, Thomas Myles Ashhurst, Barry Slobedman, Allison Abendroth
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007420

Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance
Cited by: 89
Author(s): Kalliopi Pervolaraki, Soheil Rastgou Talemi, Dorothee Albrecht, Felix Bormann, Connor Bamford, Juan L. Mendoza, K. Christopher García, John McLauchlan, Thomas Höfer, Megan L. Stanifer, Steeve Boulant
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1007531

Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds
Cited by: 12
Author(s): Henan Zhu, Batchuluun Damdinjav, Gaëlle Gonzalez, Livia Victoria Patrono, Humberto Ramírez‐Mendoza, Julien A R Amat, Joanna Crispell, Yasmin A. Parr, Toni-Ann Hammond, Enkhtuvshin Shiilegdamba, Connie Y. H. Leung, Malik Peiris, John F. Marshall, Joseph Hughes, Martin Gilbert, Pablo R. Murcia
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1007990

Caspase-11-dependent IL-1α release boosts Th17 immunity against Paracoccidioides brasiliensis
Cited by: 18
Author(s): Natália Ketelut-Carneiro, Camila Oliveira Silva Souza, Luciana Benevides, Luiz Gustavo Gardinassi, Maria Cláudia Silva, Lucas Tavares, Dario S. Zamboni, João Silva
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1007651

The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing
Cited by: 53
Author(s): Ethel Bayer-Santos, William Cenens, Bruno Y. Matsuyama, Gabriel Umaji Oka, Giancarlo Di Sessa, Izabel Del Valle Mininel, Tiago Lubiana, Chuck S. Farah
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1008038

Subclinical in utero Zika virus infection is associated with interferon alpha sequelae and sex-specific molecular brain pathology in asymptomatic porcine offspring
Cited by: 14
Author(s): Ivan Trus, Daniel Udenze, Brian Cox, Nathalie G. Bérubé, Rebecca E. Nordquist, Franz Josef van der Staay, Yanyun Huang, Gary P. Kobinger, David Safronetz, Volker Gerdts, Uladzimir Karniychuk
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1008561

Bactericidal type IV secretion system homeostasis in Xanthomonas citri
Cited by: 11
Author(s): William Cenens, Maxuel O. Andrade, E.E. Llontop, Consuelo Martı́nez, Germán G. Sgro, Chuck S. Farah
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-017-11167-3

Reconciling the opposing effects of warming on phytoplankton biomass in 188 large lakes
Cited by: 65
Author(s): Benjamin M. Kraemer, Thomas Mehner, Rita Adrian
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-10346-6

Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed
Cited by: 129
Author(s): Matthew F. Wipperman, Daniel W. Fitzgerald, Marc Antoine Jean Juste, Ying Taur, Sivaranjani Namasivayam, Alan Sher, James Bean, Vanni Bucci, Michael S. Glickman
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-11357-z

Contributions of cuticle permeability and enzyme detoxification to pyrethroid resistance in the major malaria vector Anopheles gambiae
Cited by: 102
Author(s): Gildas A. Yahouédo, Fabrice Chandre, Marie Rossignol, Carole Ginibre, Vasileia Balabanidou, Natacha Garcia Albeniz Mendez, Olivier Pigeon, John Vontas, Sylvie Cornélie
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-11677-0

Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita
Cited by: 24
Author(s): T. Yamazaki, Kensuke Ichihara, Ritsu Suzuki, Koichiro Oshima, Shinichi Miyamura, Kazuyoshi Kuwano, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Masahira Hattori, Shigeyuki Kawano
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-12495-0

Subclass-specific IgG glycosylation is associated with markers of inflammation and metabolic health
Cited by: 112
Author(s): Rosina Plomp, L. Renee Ruhaak, Hae‐Won Uh, Karli R. Reiding, Maurice H. J. Selman, Jeanine J. Houwing-Duistermaat, P. Eline Slagboom, Marian Beekman, Manfred Wuhrer
Software Mentions: 2
Published: almost 9 years ago

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