cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/cancers13133332

Colorectal Cancer Patients Have Four Specific Bacterial Species in Oral and Gut Microbiota in Common—A Metagenomic Comparison with Healthy Subjects
Cited by: 18
Author(s): Yoshinori Uchino, Yuichi Goto, Yusuke Konishi, Kan Tanabe, Hiroko Toda, Mitsuru Wada, Yoshiaki Kita, Mahiro Beppu, Shinichiro Mori, Hiroshi Hara, Takao Otsuka, Shoji Natsugoe, Eiji Hara, Tetsuro Sugiura
Software Mentions: 2
Published: about 5 years ago

10.1038/srep31857

High-fat diet disrupts metabolism in two generations of rats in a parent-of-origin specific manner
Cited by: 35
Author(s): Thomas K. Chambers, Michael D. Morgan, Andreas Heger, Richard M. Sharpe, Amanda J. Drake
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32027

Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients
Cited by: 12
Author(s): Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Anita M A C Trapman-Jansen, Renée Foekens, Maxime P. Look, Marcel Smid, Carolien H.M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32598

Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Cited by: 2
Author(s): Xu Zhang, Zhilin Qu, Bing Su
Software Mentions: 2
Published: almost 10 years ago

10.1194/jlr.M088930

Use of plasma metabolomics to analyze phenotype-genotype relationships in young hypercholesterolemic females
Cited by: 1
Author(s): Xiang Zhang, Antoine Rimbert, Willem Balder, Aeilko H. Zwinderman, Jan Albert Kuivenhoven, Geesje M. Dallinga‐Thie, Albert K. Groen
Software Mentions: 2
Published: almost 8 years ago

10.3390/cancers12123646

Global Autozygosity Is Associated with Cancer Risk, Mutational Signature and Prognosis
Cited by: 2
Author(s): Limin Jiang, Fei Guo, Jing Tang, S. Leng, Scott A. Ness, Fei Ye, Huining Kang, David C. Samuels, Yan Guo
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13040783

TAp73β Can Promote Hepatocellular Carcinoma Dedifferentiation
Cited by: 10
Author(s): Evin İşcan, Umut Ekin, Gökhan Yıldız, Özden Öz, Umur Keles, Aslı Süner, Gulcin Cakan-Akdogan, Günes Özhan, Marta Nekulová, Bořivoj Vojtěšek, Hamdiye Uzuner, Gökhan Karakülah, Hani Alotaibi, Mehmet Öztürk
Software Mentions: 2
Published: over 5 years ago

10.1007/s10911-020-09472-1

Morphological Analysis of Human Milk Membrane Enclosed Structures Reveals Diverse Cells and Cell-like Milk Fat Globules
Cited by: 5
Author(s): Isabel Schultz-Pernice, Lisa K Engelbrecht, Stefania Petricca, Christina Scheel, Alecia-Jane Twigger
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0234385

Ancestral mitogenome capture of the Southeast Asian banded linsang
Cited by: 9
Author(s): Johanna L. A. Paijmans, Axel Barlow, Kirstin Henneberger, Joerns Fickel, Michael Hofreiter, Daniel W. Foerster
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0221524

Fatty liver index is a strong predictor of changes in glycemic status in people with prediabetes: The IT-DIAB study
Cited by: 25
Author(s): Matthieu Wargny, Sarra Smati, Matthieu Pichelin, Edith Bigot‐Corbel, Charlotte Authier, Violette Dierry, Yassine Zaïr, Vincent Jacquin, Samy Hadjadj, Jèrôme Boursier, Bertrand Cariou
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep38302

Catalysis and Structure of Zebrafish Urate Oxidase Provide Insights into the Origin of Hyperuricemia in Hominoids
Cited by: 20
Author(s): Marialaura Marchetti, Anastasia Liuzzi, Beatrice Fermi, Romina Corsini, Claudia Folli, Valentina Speranzini, Francesco Gandolfi, Stefano Bettati, Luca Ronda, Laura Cendron, Rodolfo Berni, Giuseppe Zanotti, Riccardo Percudani
Software Mentions: 2
Published: over 9 years ago

10.1021/acs.jmedchem.0c02107

Folic Acid–Peptide Conjugates Combine Selective Cancer Cell Internalization with Thymidylate Synthase Dimer Interface Targeting
Cited by: 12
Author(s): Gaetano Marverti, María Luisa Dalla Chiara, Andrea Martello, Domenico D’Arca, Salvatore Pacifico, Renzo Guerrini, Francesca Spyrakis, Gaia Gozzi, Angela Lauriola, Matteo Santucci, Giuseppe Cannazza, Lorenzo Tagliazucchi, Addolorata Stefania Cazzato, Lorena Losi, Stefania Ferrari, Glauco Ponterini, Maria Paola Costi
Software Mentions: 2
Published: over 5 years ago

10.1038/srep40519

Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes
Cited by: 32
Author(s): Erwan Delrieu‐Trottin, Stefano Mona, Jeffrey Maynard, Valentina Neglia, Michel Veuille, Serge Planes
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0190446

Signatures of positive selection in African Butana and Kenana dairy zebu cattle
Cited by: 43
Author(s): Hussain Bahbahani, Bashir Salim, Faisal Almathen, Fahad Al Enezi, Joram M. Mwacharo, Olivier Hanotte
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0051942

C911: A Bench-Level Control for Sequence Specific siRNA Off-Target Effects
Cited by: 98
Author(s): Eugen Buehler, Yu‐Chi Chen, Scott E. Martin
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0238523

Transgene behavior in Zea mays L. crosses across different genetic backgrounds: Segregation patterns, cry1Ab transgene expression, insecticidal protein concentration and bioactivity against insect pests
Cited by: 8
Author(s): André Felipe Lohn, Miluse Trtikova, Ignacio H. Chapela, Johnnie Van den Berg, Hannalene du Plessis, Angelika Hilbeck
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep41748

Genome-wide association study for performance traits in chickens using genotype by sequencing approach
Cited by: 23
Author(s): Fábio Pértille, Gabriel Costa Monteiro Moreira, Ricardo Zanella, José de Ribamar da Silva Nunes, Clarissa Boschiero, Gregorí Alberto Rovadoscki, Gérson Barreto Mourão, Mônica Corrêa Ledur, Luiz Lehmann Coutinho
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0163435

Pneumococcal Serotypes Colonise the Nasopharynx in Children at Different Densities
Cited by: 12
Author(s): Fernanda Rodrigues, León Danon, Begonia Morales-Aza, Paulina Sikora, Valtýr Thors, Muriel Ferreira, Katherine A. Gould, Jason Hinds, Adam Finn
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep43747

The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania
Cited by: 33
Author(s): Simone Coughlan, Peter O. Mulhair, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 9 years ago

10.1038/srep43261

Prolonged high-fat diet induces gradual and fat depot-specific DNA methylation changes in adult mice
Cited by: 36
Author(s): Ramona A J Zwamborn, Roderick C. Slieker, Petra Mulder, Inge Zoetemelk, Lars Verschuren, H. Eka D. Suchiman, Karin Toet, S. Droog, P. Eline Slagboom, Teake Kooistra, Robert Kleemann, Bastiaan T. Heijmans
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45365

Epigenome mapping highlights chromatin-mediated gene regulation in the protozoan parasite Trichomonas vaginalis
Cited by: 12
Author(s): Min Song, Mi-Kyoung Kim, Yun Young Choi, Myung‐hee Yi, Juri Kim, Soon‐Jung Park, Tai Soon Yong, Hyoung‐Pyo Kim
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0196440

The ecology of the Drosophila-yeast mutualism in wineries
Cited by: 32
Author(s): Allison S. Quan, Michael B. Eisen
Software Mentions: 2
Published: over 8 years ago

10.1038/srep46148

An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort
Cited by: 6
Author(s): Yingleong Chan, Michael Tung, Alexander S. Garruss, Sarah W. Zaranek, Ying Chan, Jeantine E. Lunshof, Alexander Wait Zaranek, Madeleine Ball, Michael F. Chou, Elaine T. Lim, George M. Church
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0234751

Perinatal risk factors for fecal antibiotic resistance gene patterns in pregnant women and their infants
Cited by: 15
Author(s): Andrea Sosa-Moreno, Sarah S. Comstock, Kameron Y. Sugino, Fui Enn Teng, Nigel Paneth, Yelena Davis, Rosemary Olivero, Rebecca Schein, Joel Maurer, Lixin Zhang
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0180955

DNA methylation of candidate genes in peripheral blood from patients with type 2 diabetes or the metabolic syndrome
Cited by: 32
Author(s): Sanne D. van Otterdijk, Alexandra M. Binder, Katarzyna Szarc vel Szic, Julia Schwald, Karin B. Michels
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-00171-2

Exploring the microbial community (microflora) associated with ovine Haemonchus contortus (macroflora) field strains
Cited by: 22
Author(s): Saeed El‐Ashram, Xun Suo
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0243002

Modeling the trophic impacts of invasive zooplankton in a highly invaded river
Cited by: 6
Author(s): Eric Dexter, Stephen L. Katz, Stephen M. Bollens, Gretchen Rollwagen‐Bollens, Stephanie E. Hampton
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-01856-4

Establishment of a Strong Link Between Smoking and Cancer Pathogenesis through DNA Methylation Analysis
Cited by: 57
Author(s): Yunlong Ma, Ming D. Li
Software Mentions: 2
Published: over 9 years ago

10.1042/BSR20182048

Function analysis of differentially expressed microRNAs in TGF-β1-induced cardiac fibroblasts differentiation
Cited by: 2
Author(s): Suxuan Liu, Wen Ke, Yang Liu, Zhenzhen Zhao, Li-Na An, Xiaona You, Fan Yang, Xiangqun Yang, Guokun Wang, Xianxian Zhao
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jmb.2019.12.029

Diverse Antibody Responses to Conserved Structural Motifs in Plasmodium falciparum Circumsporozoite Protein
Cited by: 24
Author(s): Tossapol Pholcharee, David Oyen, Jonathan L. Torres, Yevel Flores-García, Martin Gm, González-Páez Ge, Daniel Emerling, Wayne Volkmuth, Emily Locke, King Cr, Fidel Zavala, A.B. Ward, Wilson Ia
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-03975-4

Postprandial metabolic response of breast-fed infants and infants fed lactose-free vs regular infant formula: A randomized controlled trial
Cited by: 38
Author(s): Carolyn M. Slupsky, Xuan He, Olle Hernell, Yvonne Andersson, Colin D. Rudolph, Bo Lönnerdal, Christina West
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-03918-z

Insecticide susceptibility of Anopheles mosquitoes changes in response to variations in the larval environment
Cited by: 45
Author(s): Henry F. Owusu, Nakul Chitnis, Pie Müller
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0224174

Visual body form and orientation cues do not modulate visuo-tactile temporal integration
Cited by: 4
Author(s): Sophie Smit, Anina N. Rich, Regine Zopf
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-04751-0

The temporal dependence of exploration on neotic style in birds
Cited by: 32
Author(s): Mark O’Hara, Berenika Mioduszewska, Auguste Marie Philippa von Bayern, Alice M. I. Auersperg, Thomas Bugnyar, Anna Wilkinson, Ludwig Huber, Gyula K. Gajdon
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-04708-3

Climate Classification is an Important Factor in Assessing Quality-of-Care Across Hospitals
Cited by: 10
Author(s): Mary Regina Boland, Pradipta Parhi, Pierre Gentine, Nicholas P. Tatonetti
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-05662-w

Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny
Cited by: 59
Author(s): François‐Étienne Sylvain, Nicolas Derôme
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0248071

Wintertime overlaps between female Antarctic fur seals (Arctocephalus gazella) and the krill fishery at South Georgia, South Atlantic
Cited by: 4
Author(s): Connor C. G. Bamford, Victoria Warwick-Evans, Iain J. Staniland, Jennifer A. Jackson, Philip N. Trathan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0080966

Social Influences on Inequity Aversion in Children
Cited by: 71
Author(s): Katherine McAuliffe, Peter Blake, Grace Kim, Richard W. Wrangham, Felix Warneken
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0127055

Mistletoe Infection in an Oak Forest Is Influenced by Competition and Host Size
Cited by: 12
Author(s): Radim Matula, Martin Svátek, Marcela Pálková, Daniel Volařík, Tomáš Vrška
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-06082-6

Thresholds of biodiversity and ecosystem function in a forest ecosystem undergoing dieback
Cited by: 13
Author(s): Paul M. Evans, Adrian C. Newton, Elena Cantarello, Philip A. Martin, Neil Sanderson, Davey L. Jones, Nadia Barsoum, Joan Cottrell, Stuart W. A’Hara, Lauren Fuller
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07062-6

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast
Cited by: 2
Author(s): Nadra Al-Husini, Ali Sharifi, Seyed Ahmad Mousavi, Hamidreza Chitsaz, Athar Ansari
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07241-5

In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria
Cited by: 31
Author(s): Abhishek Rajput, Manoj Kumar
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07278-6

Bacteriophages as potential new mammalian pathogens
Cited by: 74
Author(s): George Tetz, Kelly V. Ruggles, Hua Zhou, Adriana Heguy, Aristotelis Tsirigos, Victor Tetz
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-08146-z

Decadal trends in Red Sea maximum surface temperature
Cited by: 133
Author(s): Veronica Chaidez, Denis Dreano, Susana Agustı́, Carlos M. Duarte, Ibrahim Hoteit
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0248140

Discovery of novel candidates for anti-liposarcoma therapies by medium-scale high-throughput drug screening
Cited by: 6
Author(s): Iwona Grad, Robert Hanes, Pilar Ayuda‐Durán, Marieke L. Kuijjer, Jorrit M. Enserink, Leonardo A. Meza‐Zepeda, Ola Myklebost
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20181485

Combination of transcriptome sequencing and iTRAQ proteome reveals the molecular mechanisms determining petal shape in herbaceous peony (<i>Paeonia lactiflora</i> Pall.)
Cited by: 10
Author(s): Yanqing Wu, Yuhan Tang, Jingquan Yu, Daqiu Zhao, Jiali Shang, Jun Tao
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0239029

Do bank voles (Myodes glareolus) trapped in live and lethal traps show differences in tick burden?
Cited by: 4
Author(s): Nicolas De Pelsmaeker, Lars Korslund, Øyvind Steifetten
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0216379

Phospholipid levels in blood during community-acquired pneumonia
Cited by: 12
Author(s): D Müller, Anna M. Kauppi, Alicia Edin, Åsa Gylfe, Anders Sjöstedt, Anders Johansson
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-09430-8

Cerium oxide nanoparticles inhibit differentiation of neural stem cells
Cited by: 59
Author(s): Anda R. Gliga, Karin Edoff, Fanny Caputo, Thomas Källman, Hans Blom, Hanna Karlsson, Lina Ghibelli, Enrico Traversa, Sandra Ceccatelli, Bengt Fadeel
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-11159-3

Selection for energy efficiency drives strand-biased gene distribution in prokaryotes
Cited by: 11
Author(s): Na Gao, Guanting Lu, Martin J. Lercher, Weihua Chen
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-10640-3

Riparian plant litter quality increases with latitude
Cited by: 50
Author(s): Luz Boyero, Manuel A. S. Graça, Alan M. Tonin, Javier Jiménez Pérez, Austin D. Swafford, Verónica Ferreira, Andrea Landeira-Dabarca, Markos A. Alexandrou, Mark O. Gessner, Brendan G. McKie, Ricardo Albariño, Leon A. Barmuta, Marcos Callisto, Julián Chará, Éric Chauvet, Checo Colón-Gaud, David Dudgeon, Andrea C. Encalada, Ricardo Figueroa, Alexander S. Flecker, Tadeusz Fleituch, André Frainer, José F. Gonçalves, Julie E. Helson, Tomoya Iwata, Jude M. Mathooko, Charles Mwithali M’Erimba, Catherine M. Pringle, Alonso Ramírez, Christopher M. Swan, Catherine M. Yule, Richard G. Pearson
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0225788

Transient effect of melatonin treatment after neonatal hypoxic-ischemic brain injury in rats
Cited by: 9
Author(s): Hester Rijkje Berger, Axel Karl Gottfrid Nyman, Tora Sund Morken, Marius Widerøe
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-10723-1

Improving understanding of the functional diversity of fisheries by exploring the influence of global catch reconstruction
Cited by: 9
Author(s): Kirsty L. Nash, Reg Watson, Benjamin S. Halpern, Elizabeth A. Fulton, Julia L. Blanchard
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-30891-y

Investigating the role of landscape composition on honey bee colony winter mortality: A long-term analysis
Cited by: 20
Author(s): Sabrina Kuchling, Ian Kopacka, Elfriede Kalcher-Sommersguter, Michael P. Schwarz, Karl Crailsheim, Robert Brodschneider
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0237748

An approach to increase the success rate of cultivation of soil bacteria based on fluorescence-activated cell sorting
Cited by: 6
Author(s): Laura Espina
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0229537

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
Cited by: 8
Author(s): Yonatan Sher, Matthew R. Olm, Tali Raveh-Sadka, Christopher T. Brown, Ruth Sher, Brian Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0187128

Differential host mortality explains the effect of high temperature on the prevalence of a marine pathogen
Cited by: 4
Author(s): Timothy J. Sullivan, Joseph E. Neigel
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0247841

Comprehensive in silico analysis and molecular dynamics of the superoxide dismutase 1 (SOD1) variants related to amyotrophic lateral sclerosis
Cited by: 20
Author(s): Gabriel Rodrigues Coutinho Pereira, Bárbara de Azevedo Abrahim Vieira, Joelma Freire De Mesquita
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-30723-z

Surviving host - and food relevant stresses: phenotype of L. monocytogenes strains isolated from food and clinical sources
Cited by: 16
Author(s): Jule Anna Horlbog, David J. Kent, Roger Stephan, Claudia Guldimann
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0238950

Peel-1 negative selection promotes screening-free CRISPR-Cas9 genome editing in Caenorhabditis elegans
Cited by: 4
Author(s): Troy A. McDiarmid, Vinci Au, Donald G. Moerman, Catharine H. Rankin
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0153631

The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii
Cited by: 36
Author(s): Stefano Bettinazzi, Federico Plazzi, Marco Passamonti
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0186901

Adaptation to dislodgement risk on wave-swept rocky shores in the snail Littorina saxatilis
Cited by: 32
Author(s): Guénolé Le Pennec, Roger K. Butlin, Per R. Jonsson, Ann I. Larsson, Jessica Lindborg, Erik Bergström, Anja M. Westram, Kerstin Johannesson
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0172132

Salient object changes influence overt attentional prioritization and object-based targeting in natural scenes
Cited by: 10
Author(s): Nicola Anderson, Mieke Donk
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-32619-4

Sharing an environment with sick conspecifics alters odors of healthy animals
Cited by: 16
Author(s): Stephanie S. Gervasi, Maryanne Opiekun, Talia Martin, Gary K. Beauchamp, Bruce A. Kimball
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.17295

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis
Cited by: 22
Author(s): Shuofeng Hu, Hanyu Yuan, Zongcheng Li, Jian Zhang, Jiaqi Wu, Yaowen Chen, Qiang Shi, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0127455

Pyrosequencing Characterization of the Microbiota from Atlantic Intertidal Marine Sponges Reveals High Microbial Diversity and the Lack of Co-Occurrence Patterns
Cited by: 29
Author(s): Anoop Alex, Agostinho Antunes
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0234778

Photodepletion with 2-Se-Cl prevents lethal graft-versus-host disease while preserving antitumor immunity
Cited by: 1
Author(s): Jason M. Grayson, Mildred D. Perez, Rebecca Blevins, Benjamin N. Coe, Michael R. Detty, Zachariah A. McIver
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0208159

Physical therapists’ perspectives on using contextual factors in clinical practice: Findings from an Italian national survey
Cited by: 27
Author(s): Giacomo Rossettini, Alvisa Palese, Tommaso Geri, Mirta Fiorio, Luana Colloca, Marco Testa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0203286

Transcriptomic insights on the virulence-controlling CsrA, BadR, RpoN, and RpoS regulatory networks in the Lyme disease spirochete
Cited by: 22
Author(s): William K. Arnold, Christina R. Savage, Kathryn G. Lethbridge, Trever C. Smith, Catherine A. Brissette, J. Seshu, Brian Stevenson
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0191853

Ezh2 does not mediate retinal ganglion cell homeostasis or their susceptibility to injury
Cited by: 10
Author(s): Lin Cheng, Lucy Wong, Naihong Yan, Richard C. Han, Honghua Yu, Chin-Lin Guo, Khulan Batsuuri, Aniket Zinzuwadia, Ryan Guan, Kin‐Sang Cho, Dong Feng Chen
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.17312

Sequencing of cancer cell subpopulations identifies micrometastases in a bladder cancer patient
Cited by: 7
Author(s): Kris Prado, Kelvin X. Zhang, Matteo Pellegrini, Arnold I. Chin
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.17098

Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
Cited by: 46
Author(s): Rongjiang Tang, Wenjie Chen, Rong‐Quan He, Jiang‐Hui Zeng, Liang Liang, Shikang Li, Jie Ma, Dan Luo, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.18058

Clinical roles of the aberrantly expressed lncRNAs in lung squamous cell carcinoma: a study based on RNA-sequencing and microarray data mining
Cited by: 70
Author(s): Wenjie Chen, Rongjiang Tang, Rong‐Quan He, Dong‐Yao Li, Liang Liang, Jiang‐Hui Zeng, Xiaohua Hu, Jie Ma, Shikang Li, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0226225

Spatial genetic structure and diversity of natural populations of Aesculus hippocastanum L. in Greece
Cited by: 9
Author(s): Łukasz Walas, Petros Ganatsas, Grzegorz Iszkuło, Peter A. Thomas, Monika Dering
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0209124

Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts
Cited by: 20
Author(s): Stijn F. L. Mertens, Brigida Gallone, Jan Steensels, Beatriz Herrera‐Malaver, Jeroen Cortebeek, Robbe Nolmans, Veerle Saels, Valmik K. Vyas
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-34267-0

Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
Cited by: 20
Author(s): Lídia Mateo, Gabriel E. Rech
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-35074-3

Geographical and temporal distribution of the residual clusters of human leptospirosis in China, 2005–2016
Cited by: 16
Author(s): Pandji Wibawa Dhewantara, Abdullah Al Mamun, Wenyi Zhang, Wenwu Yin, Fan Ding, Danhuai Guo, Wenbiao Hu, Ricardo J. Soares Magalhães
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0248730

Variability in digestive and respiratory tract Ace2 expression is associated with the microbiome
Cited by: 26
Author(s): Sean T. Koester, Naisi Li, Daniel M. Lachance, Norma M. Morella, Neelendu Dey
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-36575-x

Analysis of genetic diversity of Xanthomonas oryzae pv. oryzae populations in Taiwan
Cited by: 10
Author(s): Chih‐Cheng Chien, Mei-Yi Chou, Chun-Yi Chen, Ming-Che Shih
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-36518-6

Forming social impressions from voices in native and foreign languages
Cited by: 23
Author(s): Cristina Baus, Phil McAleer, Katherine Marcoux, Pascal Belin, Albert Costa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0109532

Burrows of the Semi-Terrestrial Crab Ucides cordatus Enhance CO2 Release in a North Brazilian Mangrove Forest
Cited by: 38
Author(s): Nathalie Pülmanns, Karen Diele, Ulf Mehlig, Inga Nordhaus
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-018-37294-z

STAT3 is activated in multicellular spheroids of colon carcinoma cells and mediates expression of IRF9 and interferon stimulated genes
Cited by: 7
Author(s): Elin Edsbäcker, Jason T. Serviss, Iryna Kolosenko, Caroline Palm-Apergi, Angelo De Milito, Katja Pokrovskaja Tamm
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0195771

High-resolution temporal and regional mapping of MAPT expression and splicing in human brain development
Cited by: 55
Author(s): Marco M. Hefti, Kurt Farrell, SoongHo Kim, Kathryn R. Bowles, Mary Fowkes, Towfique Raj, John F. Crary
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-37547-x

Effects of defined gut microbial ecosystem components on virulence determinants of Clostridioides difficile
Cited by: 19
Author(s): Christian Carlucci, Carys S Jones, Kaitlyn Oliphant, Sandi Yen, Michelle Daigneault, Charley Carriero, Avery Robinson, Elaine O. Petrof, J. Scott Weese, Emma Allen‐Vercoe
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20201384

Prognostic and immune regulating roles of YIF1B in Pan-Cancer: a potential target for both survival and therapy response evaluation
Cited by: 12
Author(s): Jun Liu, Zheng Chen, Pingsen Zhao, Wenli Li
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-36582-y

Spatial heterogeneity of heavy metal contamination in soils and plants in Hefei, China
Cited by: 31
Author(s): Qianjin Zhang, Ruoyun Yu, Songling Fu, Wu ZeMin, Han Y. H. Chen, Hua Liu
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.20226

lncRNAs PVT1 and HAR1A are prognosis biomarkers and indicate therapy outcome for diffuse glioma patients
Cited by: 44
Author(s): Hecun Zou, Long‐Fei Wu, Yang Yi, Shuang Li, Ying Mei, Yongbin Liu, Lihua Zhang, Yuanda Cheng, Hong‐Hao Zhou
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0253434

Hospital admission for type 2 diabetes mellitus under the Universal Coverage Scheme in Thailand: A time- and geographical-trend analysis, 2009–2016
Cited by: 7
Author(s): Tanapat Laowahutanon, Haruyo Nakamura, Hisateru Tachimori, Shuhei Nomura, Tippawan Liabsuetrakul, Apiradee Lim, Petch Rawdaree, Netnapis Suchonwanich, Hiroyuki Yamamoto, Aya Ishizuka, Kenji Shibuya, Hiroaki Matsubara, Virasakdi Chongsuvivatwong
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0231178

Seasonal and latitudinal variations in sea ice algae deposition in the Northern Bering and Chukchi Seas determined by algal biomarkers
Cited by: 25
Author(s): Chelsea Wegner Koch, Lee W. Cooper, Catherine Lalande, Thomas A. Brown, Karen E. Frey, Jacqueline M. Grebmeier
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.21364

Targeting P-selectin blocks neuroblastoma growth
Cited by: 15
Author(s): Riitta Nolo, Shelley M. Herbrich, Arvind Rao, Patrick A. Zweidler‐McKay, Sankaranarayanan Kannan, Vidya Gopalakrishnan
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0252924

The drug development pipeline for glioblastoma—A cross sectional assessment of the FDA Orphan Drug Product designation database
Cited by: 4
Author(s): Pascal Johann, Dominic Lenz, Markus Ries
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-39284-1

Vegetation-fire feedback reduces projected area burned under climate change
Cited by: 71
Author(s): Matthew D. Hurteau, Shuang Liang, A. L. Westerling, Christine Wiedinmyer
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-39239-6

Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato
Cited by: 22
Author(s): Álvaro Piedra-Aguilera, Chen Jiao, Ana P. Luna, Francisco Villanueva, Marc Dabad, Anna Esteve‐Codina, Juan Antonio Díaz-Pendón, Zhangjun Fei, Eduardo R. Bejarano, Araceli G. Castillo
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0226111

Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades
Cited by: 21
Author(s): Hyunmin Koo, Joseph A. Hakim, David K. Crossman, Elliot J. Lefkowitz, Casey D. Morrow
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0148465

Transcriptomics Modeling of the Late-Gestation Fetal Pituitary Response to Transient Hypoxia
Cited by: 6
Author(s): Charles E. Wood, Eileen I. Chang, Elaine M. Richards, María Belén Rabaglino, Maureen Keller‐Wood
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0186290

Dynamic microbial populations along the Cuyahoga River
Cited by: 11
Author(s): Matthew Cannon, Joseph M. Craine, James Hester, Amanda Shalkhauser, E. Ricky Chan, Kyle Logue, Scott T. Small, David Serre
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22197

Pseudogenes of annexin A2, novel prognosis biomarkers for diffuse gliomas
Cited by: 27
Author(s): Shuang Li, Hecun Zou, Yingying Shao, Ying Mei, Yuanda Cheng, Dongli Hu, Zhi‐Rong Tan, Hong‐Hao Zhou
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-40766-5

Effects of species traits and environmental predictors on performance and transferability of ecological niche models
Cited by: 59
Author(s): Adrián Regos, Laura Gagne, Domingo Alcaraz‐Segura, João P. Honrado, Jesús Domínguez
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0222503

Genetic diversity and population structure of four Chinese rabbit breeds
Cited by: 13
Author(s): Anyong Ren, Kun Du, Xianbo Jia, Rui Yang, Jie Wang, Shiyi Chen, Songjia Lai
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-38654-z

Imaging object-scene relations processing in visible and invisible natural scenes
Cited by: 22
Author(s): Nathan Faivre, Julien Dubois, Naama Schwartz, Liad Mudrik
Software Mentions: 2
Published: over 7 years ago

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