cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1080/20002297.2021.1887680

Comparisons of oral, intestinal, and pancreatic bacterial microbiomes in patients with pancreatic cancer and other gastrointestinal diseases
Cited by: 15
Author(s): Mei Chung, Naisi Zhao, Richard Meier, Devin C. Koestler, Guojun Wu, Erika del Castillo, Bruce J. Paster, Kevin P. Charpentier, Jacques Izard, Karl T. Kelsey, Dominique S. Michaud
Software Mentions: 3
Published: over 5 years ago

10.1128/mBio.00301-18

TgTKL1 Is a Unique Plant-Like Nuclear Kinase That Plays an Essential Role in Acute Toxoplasmosis
Cited by: 15
Author(s): Joseph M. Varberg, Isabelle Coppens, Gustavo Arrizabalaga, Rajshekhar Y. Gaji
Software Mentions: 3
Published: over 8 years ago

10.1080/20002297.2020.1814674

Grade C molar-incisor pattern periodontitis subgingival microbial profile before and after treatment
Cited by: 8
Author(s): Irina M. Velsko, Peter Harrison, Natalia I. Chalmers, Jennifer Barb, Huei-Jean Huang, Ikramuddin Aukhil, Luciana M. Shaddox
Software Mentions: 3
Published: over 6 years ago

10.1080/20002297.2017.1374152

Effect of maltitol-containing chewing gum use on the composition of dental plaque microbiota in subjects with active dental caries
Cited by: 10
Author(s): Erica M. Prosdocimi, James Kistler, Rebecca Moazzez, Clémentine Thabuis, Caroline Perreau, William G. Wade
Software Mentions: 3
Published: over 9 years ago

10.1128/mBio.02002-18

Network-Guided Discovery of Influenza Virus Replication Host Factors
Cited by: 22
Author(s): Emily E. Ackerman, Eiryo Kawakami, Manami Katoh, Tokiko Watanabe, Shinji Watanabe, Yuriko Tomita, Tiago J. S. Lopes, Yoshikazu Matsuoka, Hiroaki Kitano, Jason E. Shoemaker, Yoshihiro Kawaoka
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.00062-19

Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection
Cited by: 32
Author(s): Eve G D Hopkins, Theodoros I. Roumeliotis, Caroline Mullineaux-Sanders, Jyoti S. Choudhary, Gad Frankel
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.00321-19

Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
Cited by: 65
Author(s): Gajender Aleti, Jonathon L. Baker, Xiaoyu Tang, R.C. González Álvarez, Márcia Dinis, Nini Chaichanasakul Tran, Alexey V. Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C. Dorrestein, Anna Edlund
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.02376-18

Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments
Cited by: 38
Author(s): John Bird, Eric D. Tague, Laura Zinke, Jenna M. Schmidt, Andrew D. Steen, Brandi Kiel Reese, Ian P. G. Marshall, Gordon Webster, Andrew J. Weightman, Hector F. Castro, Shawn R. Campagna, Karen G. Lloyd
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.00505-19

Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
Cited by: 17
Author(s): José Luis López, Mauricio Javier Lozano, Antonio Lagares, María Laura Fabre, Walter Omar Draghi, María Florencia Del Papa, Mariano Pistorio, Anke Becker, Daniel Wibberg, Andreas Schlüter, Alfred Pühler, Jochen Blom, Alexander Goesmann
Software Mentions: 3
Published: about 7 years ago

10.1128/mBio.02430-19

Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome in a Multipartite Beetle Microbiome
Cited by: 46
Author(s): Samantha C. Waterworth, Laura Flórez, Evan R. Rees, Christian Hertweck, Martin Kaltenpoth, Jason C. Kwan
Software Mentions: 3
Published: over 6 years ago

10.1128/mBio.00932-20

Parallel Evolution of Tobramycin Resistance across Species and Environments
Cited by: 50
Author(s): Michelle R. Scribner, Alfonso Santos-López, C. W. Marshall, Christopher Deitrick, Vaughn S. Cooper
Software Mentions: 3
Published: about 6 years ago

10.1037/xlm0000522

Remembering who was where: A happy expression advantage for face identity-location binding in working memory.
Cited by: 4
Author(s): Sara Spotorno, Megan Evans, Mike Jackson
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.ijcha.2021.100716

Update and, internal and temporal-validation of the FRANCE-2 and ACC-TAVI early-mortality prediction models for Transcatheter aortic Valve Implantation (TAVI) using data from the Netherlands heart registration (NHR)
Cited by: 5
Author(s): Hatem Al-Farra, Bas A.J.M. de Mol, Anita C.J. Ravelli, W. J. P. P. ter Burg, Saskia Houterman, José P.S. Henriques, Ameen Abu‐Hanna
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202327

Identification of a novel immune microenvironment signature predicting survival and therapeutic options for bladder cancer
Cited by: 9
Author(s): Yi‐Lin Yan, Zhengnan Huang, Jinming Cai, Pengyu Tang, Fang Zhang, Mingyue Tan, Bing Shen
Software Mentions: 3
Published: over 5 years ago

10.3390/jof6040311

Transcriptional Remodeling Patterns in Murine Dendritic Cells Infected with Paracoccidioides brasiliensis: More Is Not Necessarily Better
Cited by: 1
Author(s): Calliandra Maria de-Souza-Silva, Fabián Andrés Hurtado, Aldo Henrique Tavares, Getúlio Pereira de Oliveira Júnior, Tainá Raiol, Christiane Nishibe, Daniel Paiva Agustinho, Nalvo F. Almeida, Maria Tereza Machado Teles Walter, André Moraes Nicola, Anamélia Lorenzetti Bocca, Patrícia Albuquerque, Ildinete Silva-Pereira
Software Mentions: 3
Published: over 5 years ago

10.3390/jof6040348

Human Pathogenic Candida Species Respond Distinctively to Lactic Acid Stress
Cited by: 2
Author(s): Isabella Zangl, Reinhard Beyer, Ildiko-Julia Pap, Joseph Strauss, Christoph Aspöck, Birgit Willinger, Christoph Schüller
Software Mentions: 3
Published: over 5 years ago

10.1099/jgv.0.001494

Analysis of partial sequences of the RNA-dependent RNA polymerase gene as a tool for genus and subgenus classification of coronaviruses
Cited by: 9
Author(s): David A. Wilkinson, Léa Joffrin, Camille Lebarbenchon, Patrick Mavingui
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202636

Identification and validation of a two-gene metabolic signature for survival prediction in patients with kidney renal clear cell carcinoma
Cited by: 6
Author(s): Xudong Guo, Zhuolun Sun, Shaobo Jiang, Xunbo Jin, Hanbo Wang
Software Mentions: 3
Published: over 5 years ago

10.1111/ijfs.14403

Bioactive constituents, <i>in vitro</i> radical scavenging and antibacterial activities of selected <i>Apis mellifera</i> honey from Kenya
Cited by: 26
Author(s): Hosea O. Mokaya, Joel L. Bargul, Janet Irungu, H. Michael G. Lattorff
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00414-016-1453-x

Characterization of degradation and heterozygote balance by simulation of the forensic DNA analysis process
Cited by: 21
Author(s): Oskar Hansson, Thore Egeland, Peter Gill
Software Mentions: 3
Published: almost 10 years ago

10.7150/ijms.63541

Identification of Key Genes and Pathways associated with Endometriosis by Weighted Gene Co-expression Network Analysis
Cited by: 9
Author(s): Jingni Wu, Xiaoling Fang, Xiaomeng Xia
Software Mentions: 3
Published: over 5 years ago

10.7150/ijms.46874

Association of CXCL13 and Immune Cell Infiltration Signature in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Fangdong Jiao, Hao Sun, Qingya Yang, Hui Sun, Zehua Wang, Ming Liu, Jun Chen
Software Mentions: 3
Published: over 6 years ago

10.7150/ijms.46265

Global Gene Expression of Cultured Human Dermal Fibroblasts: Focus on Cell Cycle and Proliferation Status in Improving the Condition of Face Skin
Cited by: 1
Author(s): Bogusław Machaliński, Dorota Rogińska, Aleksandra Wilk, Kamila Szumilas, Piotr Prowans, Edyta Paczkowska, Paweł Szumilas, Iwona Stecewicz, Piotr Zawodny, Maciej Ziętek, Barbara Wiszniewska
Software Mentions: 3
Published: over 5 years ago

10.1038/s10038-020-0803-1

The clinical-phenotype continuum in DYNC1H1-related disorders—genomic profiling and proposal for a novel classification
Cited by: 26
Author(s): Lena‐Luise Becker, Hormos Salimi Dafsari, Jens Schallner, Dalia Abdin, Michael Seifert, Florence Petit, Thomas Smol, Levinus A. Bok, Lance H. Rodan, Ingrid P.C. Krapels, Stephanie Spranger, Bernhard Weschke, Katherine Johnson, Volker Straub, Angela M. Kaindl, Nataliya Di Donato, Maja von der Hagen, Sebahattin Çırak
Software Mentions: 3
Published: about 6 years ago

10.1016/j.ijpddr.2021.01.001

TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries
Cited by: 6
Author(s): Alexander Y.F. Lam, Daniel Vuong, Aaron R. Jex, Andrew M. Piggott, Ernest Lacey, Samantha J. Emery-Corbin
Software Mentions: 3
Published: over 5 years ago

10.1186/s40942-020-00209-0

Topographic analysis of macular choriocapillaris flow deficits in diabetic retinopathy using swept–source optical coherence tomography angiography
Cited by: 17
Author(s): Isaac Gendelman, A. Yasin Alibhai, Eric M. Moult, Emily S. Levine, Phillip X. Braun, Nihaal Mehta, Yi Zhao, Akihiro Ishibazawa, Osama Sorour, Caroline R. Baumal, André J. Witkin, Elias Reichel, James G. Fujimoto, Jay S. Duker, Nadia K. Waheed
Software Mentions: 3
Published: over 6 years ago

10.1186/s40594-021-00306-y

Am I getting through? Surveying students on what messages they recall from the first day of STEM classes
Cited by: 6
Author(s): Clara L. Meaders, Lillian G. Senn, Brian A. Couch, A. Kelly Lane, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, Michelle K. Smith
Software Mentions: 3
Published: about 5 years ago

10.1099/ijsem.0.004774

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
Cited by: 10
Author(s): Xiaoying Li, Jessica L. Sutter, Jacobo de la Cuesta-Zuluaga, Jillian L. Waters, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 3
Published: over 5 years ago

10.1167/iovs.61.2.41

Evidence That Emmetropization Buffers Against Both Genetic and Environmental Risk Factors for Myopia
Cited by: 6
Author(s): Alfred Pozarickij, Clair Enthoven, Neema Ghorbani Mojarrad, Denis Plotnikov, Milly S. Tedja, Annechien E. G. Haarman, J. Willem L. Tideman, Jan Roelof Polling, Kate Northstone, Cathy Williams, Caroline C W Klaver, Jeremy A. Guggenheim
Software Mentions: 3
Published: over 6 years ago

10.1177/20416695211038265

The Impact of Face Masks on the Emotional Reading Abilities of Children—A Lesson From a Joint School–University Project
Cited by: 30
Author(s): Claus-Christian Carbon, Martin M. Serrano
Software Mentions: 3
Published: about 5 years ago

10.1177/2041669519874817

The Pupillary Response to the Unknown: Novelty Versus Familiarity
Cited by: 7
Author(s): Steve Beukema, Ben Jennings, Jay A. Olson, Frederick A. A. Kingdom
Software Mentions: 3
Published: almost 7 years ago

10.2196/19416

A Human-Algorithm Integration System for Hip Fracture Detection on Plain Radiography: System Development and Validation Study
Cited by: 10
Author(s): Chi‐Tung Cheng, Chih-Chi Chen, Fu-Jen Cheng, Huan‐Wu Chen, Yi-Siang Su, Chun‐Nan Yeh, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202410

Systems pharmacology dissection of Epimedium targeting tumor microenvironment to enhance cytotoxic T lymphocyte responses in lung cancer
Cited by: 11
Author(s): Chao Huang, Zhihua Li, Jinglin Zhu, Xuetong Chen, Yuanyuan Hao, Ruijie Yang, Ruifei Huang, Jun Zhou, Zhenzhong Wang, Wei Xiao, Chunli Zheng, Yonghua Wang
Software Mentions: 3
Published: over 5 years ago

10.1186/1742-6405-8-26

HIV-1 mutational pathways under multidrug therapy
Cited by: 13
Author(s): Glenn Lawyer, André Altmann, Alexander Thielen, Maurizio Zazzi, Anders Sönnerborg, Thomas Lengauer
Software Mentions: 3
Published: over 15 years ago

10.7554/eLife.47713

Protein engineering expands the effector recognition profile of a rice NLR immune receptor
Cited by: 97
Author(s): Juan Carlos De la Concepcion, Marina Franceschetti, Dan MacLean, Ryohei Terauchi, Sophien Kamoun, Mark J. Banfield
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.32341

CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo
Cited by: 60
Author(s): Gabriel Aughey, Alicia Estacio-Gómez, Jamie Thomson, Hang Yin, Tony D. Southall
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.46497

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
Cited by: 80
Author(s): Tom O. Delmont, Evan Kiefl, Ozsel Kilinc, Özcan C. Esen, Ismail Uysal, Michael S. Rappé, Steven Giovannoni, A. Murat Eren
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.202853

Comprehensive analysis of genomic and immunological profiles in Chinese and Western hepatocellular carcinoma populations
Cited by: 4
Author(s): Wei Li, Hong Wu, Xuewen Xu, Zhang Yange
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.58435

Light-induced engagement of microglia to focally remodel synapses in the adult brain
Cited by: 20
Author(s): Carla Cangalaya, Stoyan Stoyanov, Klaus–Dieter Fischer, Alexander Dityatev
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.65427

Ciliary neuropeptidergic signaling dynamically regulates excitatory synapses in postnatal neocortical pyramidal neurons
Cited by: 15
Author(s): Lauren Tereshko, Ya Gao, Brian A Cary, Gina G. Turrigiano, Piali Sengupta
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.54993

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
Cited by: 30
Author(s): Joana G. Marques, Berkley E. Gryder, Blaz Pavlovic, Yeonjoo Chung, Quy A. Ngo, Fabian Frommelt, Matthias Gstaiger, Young K. Song, Katharina Benischke, Dominik Laubscher, Marco Wachtel, Javed Khan, Beat W. Schäfer
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.47293

tec-1 kinase negatively regulates regenerative neurogenesis in planarians
Cited by: 9
Author(s): Alexander Karge, Nicolle A. Bonar, Scott T. Wood, Christian P. Petersen
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.61073

Plasma proteomic biomarker signature of age predicts health and life span
Cited by: 63
Author(s): Toshiko Tanaka, Nathan Basisty, Giovanna Fantoni, Julián Candia, Ann Zenobia Moore, Angélique Biancotto, Birgit Schilling, Stefania Bandinelli, Luigi Ferrucci
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.57000

Subcellular sorting of neuregulins controls the assembly of excitatory-inhibitory cortical circuits
Cited by: 18
Author(s): David Exposito-Alonso, Catarina Osório, C. Bernard, Sandra Pascual-García, Isabel del Pino, Òscar Marín, Beatriz Rico
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.54928

A broad mutational target explains a fast rate of phenotypic evolution
Cited by: 11
Author(s): Fabrice Besnard, João Picão-Osório, Clément Dubois, Marie‐Anne Félix
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.59659

Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
Cited by: 9
Author(s): Zhonghao Deng, Courtney Ng, Kenzo Inoue, Ziyu Chen, Yuhan Xia, Xiaoyu Hu, Matthew B. Greenblatt, Alessandra B. Pernis, Baohong Zhao
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.49555

Decreasing human body temperature in the United States since the Industrial Revolution
Cited by: 90
Author(s): Myroslava Protsiv, Catherine Ley, Joanna Lankester, Trevor Hastie, Julie Parsonnet
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.65902

Mechanistic theory predicts the effects of temperature and humidity on inactivation of SARS-CoV-2 and other enveloped viruses
Cited by: 134
Author(s): Dylan H. Morris, Claude Kwe Yinda, Amandine Gamble, Fernando W. Rossine, Qishen Huang, Trenton Bushmaker, Robert J. Fischer, M. Jeremiah Matson, Neeltje van Doremalen, Peter J. Vikesland, Linsey C. Marr, Vincent J. Munster, James O. Lloyd‐Smith
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.09406

An internal promoter underlies the difference in disease severity between N- and C-terminal truncation mutations of Titin in zebrafish
Cited by: 83
Author(s): Jun Zou, Diana A. Tran, Mai Baalbaki, Ling Tang, Annie Poon, Angelo Pelonero, Erron W. Titus, Christiana Yuan, Chenxu Shi, Shruthi Patchava, Elizabeth Halper, Jasmine Garg, Irina Movsesyan, Chaoying Yin, Roland S. Wu, Lisa D. Wilsbacher, Jiandong Liu, Ron Hager, Shaun R. Coughlin, Martin Jinek, Clive R. Pullinger, John P. Kane, Daniel Hart, Pui Yan Kwok, Rahul C. Deo
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-019-6307-8

DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation
Cited by: 22
Author(s): Abdolrahman Khezri, Birgitte Narud, Else‐Berit Stenseth, Anders Johannisson, Frøydis Deinboll Myromslien, Ann Helen Gaustad, Robert Wilson, Robert Lyle, Jane M. Morrell, Elisabeth Kommisrud, Rafi Ahmad
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-017-4316-z

Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia
Cited by: 25
Author(s): Hiroki Takahashi, Yoko Kusuya, Daisuke Hagiwara, Azusa Takahashi‐Nakaguchi, Kanae Sakai, Tohru Gonoi
Software Mentions: 3
Published: over 8 years ago

10.1186/s12879-020-05571-w

Pharmacist-led counselling intervention to improve antiretroviral drug adherence in Pakistan: a randomized controlled trial
Cited by: 9
Author(s): Zeenat Fatima Chatha, Usman Rashid, Sharon Olsen, Fakhar ud Din, Amjad Khan, Komal Nawaz, Siew Hua Gan, Gul Majid Khan
Software Mentions: 3
Published: over 5 years ago

10.1186/s12879-020-05091-7

Live poultry market closure and avian influenza A (H7N9) infection in cities of China, 2013–2017: an ecological study
Cited by: 6
Author(s): Ying Chen, Jian Cheng, Zhiwei Xu, Wenbiao Hu, Jiahai Lu
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.08490

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Cited by: 363
Author(s): Simon Roux, Steven J. Hallam, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 3
Published: about 11 years ago

10.1186/s12916-020-01817-1

Neutrophil to lymphocyte ratio and cancer prognosis: an umbrella review of systematic reviews and meta-analyses of observational studies
Cited by: 186
Author(s): Meghan A. Cupp, Margarita Cariolou, Ioanna Tzoulaki, Dagfinn Aune, Εvangelos Εvangelou, Antonio J. Berlanga‐Taylor
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12920-017-0301-2

Analysis of viral diversity for vaccine target discovery
Cited by: 12
Author(s): Mohammad Asif Khan, Yongli Hu, Olivo Miotto, Natascha May Thevasagayam, Rashmi Sukumaran, Hadia Syahirah Abd Raman, Vladimir Brusic, Tin Wee Tan, J. Thomas August
Software Mentions: 3
Published: over 8 years ago

10.1186/s12920-020-00756-3

Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation
Cited by: 16
Author(s): Yiyun Chen, Mier Jiang, Ling Tian
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-018-5313-6

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 7 years ago

10.1186/s12920-019-0645-x

CDK1 and CCNB1 as potential diagnostic markers of rhabdomyosarcoma: validation following bioinformatics analysis
Cited by: 23
Author(s): Qianru Li, Liang Zhang, Jinfang Jiang, Yangyang Zhang, Xiaomeng Wang, Qiaochu Zhang, Yang Wang, Chunxia Liu, Feng Li
Software Mentions: 3
Published: over 6 years ago

10.1186/s12920-021-00975-2

Identification and validation of signal recognition particle 14 as a prognostic biomarker predicting overall survival in patients with acute myeloid leukemia
Cited by: 3
Author(s): Lingling Shi, Rui Huang, Yongrong Lai
Software Mentions: 3
Published: over 5 years ago

10.1186/s12874-016-0187-2

Combined models for pre- and post-treatment longitudinal biomarker data: an application to CD4 counts in HIV-patients
Cited by: 3
Author(s): Oliver Stirrup, Abdel Babiker, Andrew Copas
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12874-021-01263-4

Development of a temporally harmonized asset index: evidence from across 50 years of follow up of a birth cohort in Guatemala
Cited by: 5
Author(s): Jithin Sam Varghese, John A. Maluccio, Solveig A. Cunningham, Manuel Ramírez‐Zea, Aryeh D. Stein
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2180-12-220

Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays
Cited by: 15
Author(s): Jon Ahlinder, Caroline Öhrman, Kerstin Svensson, Petter Lindgren, Anders Johansson, Mats Forsman, Pär Larsson, Andreas Sjödin
Software Mentions: 3
Published: over 14 years ago

10.1186/1471-2164-15-597

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera
Cited by: 73
Author(s): Nai-Yong Liu, Wei Xü, Alexie Papanicolaou, Shuang-Lin Dong, Alisha Anderson
Software Mentions: 3
Published: about 12 years ago

10.1186/s12866-017-1111-6

Temporal dynamics in microbial soil communities at anthrax carcass sites
Cited by: 11
Author(s): Karoline Valseth, Camilla Nesbø, W. Ryan Easterday, Wendy C. Turner, Jaran Strand Olsen, Nils Chr. Stenseth, Thomas Haverkamp
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12866-021-02284-1

Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin
Cited by: 3
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Anja Poehlein, Wolfgang R. Streit, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 3
Published: about 5 years ago

10.1186/s12866-019-1586-4

Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes
Cited by: 14
Author(s): Samuel Verbanic, Colin Y. Kim, John M. Deacon, Irene Chen
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12866-021-02288-x

Comparison of targeted metagenomics and IS-Pro methods for analysing the lung microbiome
Cited by: 2
Author(s): Tanweer Goolam Mahomed, Rph Peters, Ghj Pretorius, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 3
Published: about 5 years ago

10.1186/s12866-021-02197-z

Sewage and sewage-contaminated environments are the most prominent sources to isolate phages against Pseudomonas aeruginosa
Cited by: 14
Author(s): Bahareh Lashtoo Aghaee, Mohammadali Khan Mirzaei, Mohammad Yousef Alikhani, Ali Mojtahedi
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-021-02139-9

Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing
Cited by: 8
Author(s): Sofie Marie Edslev, Paal Skytt Andersen, Tove Agner, Ditte Marie Lindhardt Saunte, Anna Cäcilia Ingham, Thor Bech Johannesen, Maja‐Lisa Clausen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-017-3499-7

Visualization of consensus genome structure without using a reference genome
Cited by: 3
Author(s): Isao Tada, Yasuhiro Tanizawa, Masanori Arita
Software Mentions: 3
Published: over 9 years ago

10.1186/s12866-019-1548-x

Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Cited by: 24
Author(s): Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron Read, Tim A. McAllister
Software Mentions: 3
Published: almost 7 years ago

10.1080/21623945.2021.1889815

Effects of non-vascularized adipose tissue transplantation on its genetic profile
Cited by: 1
Author(s): Jeannine Susanne Schreiter, Olga Kurow, Stefan Langer, M. Steinert, Lucas Massier
Software Mentions: 3
Published: over 5 years ago

10.1186/s12891-017-1791-y

Co-expression of 1α-hydroxylase and vitamin D receptor in human articular chondrocytes
Cited by: 10
Author(s): Ann Kristin Hansen, Yngve Figenschau, Inigo Zubiaurre-Martinez
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12882-020-01828-3

The association between serum chloride levels and chronic kidney disease progression: a cohort study
Cited by: 13
Author(s): Minesh Khatri, Joshua P. Zitovsky, Dale Lee, Kamal Nayyar, Melissa Fazzari, Candace D. Grant
Software Mentions: 3
Published: over 6 years ago

10.1186/s12883-018-1149-6

Comorbidity of migraine with ADHD in adults
Cited by: 24
Author(s): Thomas Folkmann Hansen, Louise K. Hoeffding, Lisette J. A. Kogelman, Thilde Marie Haspang, Henrik Ullum, Erik Sørensen, Christian Erikstrup, Ole Birger Pedersen, Kaspar René Nielsen, Henrik Hjalgrim, Helene M. Paarup, Thomas Werge, Kristoffer Sølvsten Burgdorf
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2415-13-40

Tear fluid proteomics multimarkers for diabetic retinopathy screening
Cited by: 46
Author(s): Zsuzsa Török, Tünde Pető, Éva Csősz, Edit Tukacs, Ágnes Molnár, Zsuzsanna Maros-Szabó, András Berta, József Tőzsér, András Hajdú, Valéria Nagy, Bálint Domokos, Adrienne Csutak
Software Mentions: 3
Published: about 13 years ago

10.1136/bmj.k452

Maternal thyroid function and child educational attainment: prospective cohort study
Cited by: 30
Author(s): Scott M. Nelson, Caroline Haig, Alex McConnachie, Naveed Sattar, Susan M. Ring, George Davey Smith, Debbie A. Lawlor, Robert Lindsay
Software Mentions: 3
Published: over 8 years ago

10.1136/bmj.k5222

Common conditions associated with hereditary haemochromatosis genetic variants: cohort study in UK Biobank
Cited by: 103
Author(s): Luke C. Pilling, Jone Tamosauskaite, Garan Jones, Andrew R. Wood, Lindsay Jones, Chai-Ling Kuo, George A. Kuchel, Luigi Ferrucci, David Melzer
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2019.00581

Rhizobacterial Community Assembly Patterns Vary Between Crop Species
Cited by: 39
Author(s): Andrew Matthews, Sarah Pierce, Helen Hipperson, Ben Raymond
Software Mentions: 2
Published: over 7 years ago

10.1259/bjrcr.20190122

Advanced multimodality MR imaging of a cerebral nocardiosis abscess in an immunocompetent patient with a focus on Amide Proton Transfer weighted imaging
Cited by: 3
Author(s): Elisabeth Sartoretti, Thomas Sartoretti, Annina Gutzwiller, Urs Karrer, Christoph A. Binkert, Arash Najafi, David Czell, Simon Beyeler, Sabine Sartoretti‐Schefer
Software Mentions: 2
Published: about 6 years ago

10.1038/s41366-020-0627-2

Independent influences of maternal obesity and fetal sex on maternal cardiovascular adaptation to pregnancy: a prospective cohort study
Cited by: 10
Author(s): Noor E. W. D. Teulings, Angela Wood, Ulla Sovio, Susan E. Ozanne, Gordon C. S. Smith, Catherine Aiken
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0225788

Transient effect of melatonin treatment after neonatal hypoxic-ischemic brain injury in rats
Cited by: 9
Author(s): Hester Rijkje Berger, Axel Karl Gottfrid Nyman, Tora Sund Morken, Marius Widerøe
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237748

An approach to increase the success rate of cultivation of soil bacteria based on fluorescence-activated cell sorting
Cited by: 6
Author(s): Laura Espina
Software Mentions: 2
Published: almost 6 years ago

10.3389/fneur.2020.499910

Differences in Advanced Magnetic Resonance Imaging in MOG-IgG and AQP4-IgG Seropositive Neuromyelitis Optica Spectrum Disorders: A Comparative Study
Cited by: 12
Author(s): Felix Schmidt, Claudia Chien, Joseph Kuchling, Judith Bellmann‐Strobl, Klemens Ruprecht, Nadja Siebert, Susanna Asseyer, Sven Jarius, Alexander U. Brandt, Michael Scheel, Friedemann Paul
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0229537

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
Cited by: 8
Author(s): Yonatan Sher, Matthew R. Olm, Tali Raveh-Sadka, Christopher T. Brown, Ruth Sher, Brian Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: over 6 years ago

10.1007/s10549-018-4864-1

Screening mammography: benefit of double reading by breast density
Cited by: 22
Author(s): My von Euler‐Chelpin, Martin Lillholm, George Napolitano, Ilse Vejborg, Mads Nielsen, Elsebeth Lynge
Software Mentions: 2
Published: about 8 years ago

10.3389/fneur.2018.00356

Guiding Device for Precision Grafting of Peripheral Nerves in Complete Thoracic Spinal Cord Injury: Design and Sizing for Clinical Trial
Cited by: 1
Author(s): Arvid Frostell, Per Mattsson, Mikael Svensson
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-014-0372-4

A fixed-point algorithm for estimating amplification efficiency from a polymerase chain reaction dilution series
Cited by: 9
Author(s): Michael E. Jones, George C. Mayne, Tingting Wang, David I. Watson, Damian J. Hussey
Software Mentions: 2
Published: over 11 years ago

10.1186/s13045-020-01024-8

Targeting B7-H3 via chimeric antigen receptor T cells and bispecific killer cell engagers augments antitumor response of cytotoxic lymphocytes
Cited by: 45
Author(s): Jie Liu, Shuo Yang, Bihui Cao, Guangyu Zhou, Fengjuan Zhang, Yuan Wang, Rixin Wang, Lipeng Zhu, Meng Yang, Cong Hu, Hui Liang, Xu Lin, Kangshun Zhu, Guokai Chen, Kathy Qian Luo, Lijun Di, Qi Zhao
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 9 years ago

10.2147/JHC.S144068

Healthcare costs of transarterial chemoembolization in the treatment of hepatocellular carcinoma
Cited by: 8
Author(s): Waleed Fateen, Fakhar Z. Khan, Richard J O’Neill, Martin James, Stephen Ryder, Guruprasad P. Aithal
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0187128

Differential host mortality explains the effect of high temperature on the prevalence of a marine pathogen
Cited by: 4
Author(s): Timothy J. Sullivan, Joseph E. Neigel
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0247841

Comprehensive in silico analysis and molecular dynamics of the superoxide dismutase 1 (SOD1) variants related to amyotrophic lateral sclerosis
Cited by: 20
Author(s): Gabriel Rodrigues Coutinho Pereira, Bárbara de Azevedo Abrahim Vieira, Joelma Freire De Mesquita
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2020.571479

Optimized OPA1 Isoforms 1 and 7 Provide Therapeutic Benefit in Models of Mitochondrial Dysfunction
Cited by: 9
Author(s): Daniel Maloney, Naomi Chadderton, Sophia Millington‐Ward, Arpad Palfi, Ciara Shortall, James J. O’Byrne, Lorraine Cassidy, David Keegan, Peter Humphries, Paul F. Kenna, G. Jane Farrar
Software Mentions: 2
Published: over 5 years ago

10.1016/j.ijpara.2016.09.007

Fasciola hepatica demonstrates high levels of genetic diversity, a lack of population structure and high gene flow: possible implications for drug resistance
Cited by: 67
Author(s): Nicola J. Beesley, Diana Williams, Steve Paterson, Jane E. Hodgkinson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0238950

Peel-1 negative selection promotes screening-free CRISPR-Cas9 genome editing in Caenorhabditis elegans
Cited by: 4
Author(s): Troy A. McDiarmid, Vinci Au, Donald G. Moerman, Catharine H. Rankin
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani10091678

Critical Perspective of Animal Production Specialists on Cell-Based Meat in Brazil: From Bottleneck to Best Scenarios
Cited by: 17
Author(s): Marina Sucha Heidemann, César Augusto Taconeli, Germano Glufke Reis, Giuliana Parisi, Carla Forte Maiolino Molento
Software Mentions: 2
Published: almost 6 years ago

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Papers Mentioning ggplot2 11,441