cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fnmol.2018.00454

Effects of APOE Genotype on Brain Proteomic Network and Cell Type Changes in Alzheimer's Disease
Cited by: 48
Author(s): Jingting Dai, Erik C. B. Johnson, Eric B. Dammer, Duc M. Duong, Marla Gearing, James J. Lah, Aĺlan I. Levey, Thomas S. Wingo, Nicholas T. Seyfried
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0244252

Divergence of photosynthetic strategies amongst marine diatoms
Cited by: 16
Author(s): Nerissa L. Fisher, Douglas A. Campbell, David Hughes, Unnikrishnan Kuzhiumparambil, Kimberly H. Halsey, Peter J. Ralph, David J. Suggett
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0198554

Descriptions of self-treatment for the middle-aged and elderly in Shanxi, China
Cited by: 9
Author(s): Rui Wang, Chenjin Ma, Kun Jiang, Ming Li, Shuangge Ma
Software Mentions: 3
Published: about 8 years ago

10.1128/mSphere.00164-20

Accumulation of Antibiotic Resistance Genes in Carbapenem-Resistant <i>Acinetobacter baumannii</i> Isolates Belonging to Lineage 2, Global Clone 1, from Outbreaks in 2012–2013 at a Tehran Burns Hospital
Cited by: 21
Author(s): Masoumeh Douraghi, Johanna J. Kenyon, Parisa Aris, Mahla Asadian, Sedighe Ghourchian, Mohammad Hamidian
Software Mentions: 3
Published: about 6 years ago

10.1128/mSphere.00052-20

Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations
Cited by: 61
Author(s): Kasia Piwosz, Tanja Shabarova, Jakob Pernthaler, Thomas Posch, Karel Šimek, Petr Porcal, Michaela M. Salcher
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0042737

Climate and Weather Impact Timing of Emergence of Bats
Cited by: 58
Author(s): Winifred F. Frick, Phillip M. Stepanian, Jeffrey F. Kelly, Kenneth W. Howard, Charles M. Kuster, Thomas Kunz, Phillip B. Chilson
Software Mentions: 3
Published: almost 14 years ago

10.3389/fpls.2020.614618

Predominance of Metabolic Resistance in a Six-Way-Resistant Palmer Amaranth (Amaranthus palmeri) Population
Cited by: 23
Author(s): Chandrima Shyam, Ednaldo Alexandre Borgato, Dallas E. Peterson, J. Anita Dille, Mithila Jugulam
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12917-018-1762-z

Assessing the performance of a Fasciola gigantica serum antibody ELISA to estimate prevalence in cattle in Cameroon
Cited by: 9
Author(s): Robert F. Kelly, Stella Mazeri, Carol A. Hartley, Saidou M. Hamman, Victor Ngu Ngwa, Egbe Franklyn Nkongho, Vincent N. Tanya, Melissa Sander, Lucy Ndip, K. L. Morgan, Adrian Muwonge, Ian Handel, B. M. C. de Bronsvoort, Diana Williams
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2020.561413

Chilling and Forcing From Cut Twigs—How to Simplify Phenological Experiments for Citizen Science
Cited by: 11
Author(s): Annette Menzel, Ye Yuan, Andreas Hamann, Ulrike Ohl, Michael Matiu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.01178

It Is Hot in the Sun: Antarctic Mosses Have High Temperature Optima for Photosynthesis Despite Cold Climate
Cited by: 37
Author(s): Alicia Perera-Castro, Melinda J. Waterman, Johanna D. Turnbull, Michael B. Ashcroft, Ella McKinley, Jennifer R. Watling, Jessica Bramley-Alves, Angélica Casanova-Katny, Gustavo E. Zúñiga, Jaume Flexas, Sharon A. Robinson
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/1937387

Protein Level and Infantile Diarrhea in a Postweaning Piglet Model
Cited by: 10
Author(s): Jing Gao, Jie Yin, Kang Xu, Hui Han, Zemin Liu, Chenyu Wang, Tiejun Li, Yulong Yin
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22041831

Receptor Tyrosine Kinase Signaling and Targeting in Glioblastoma Multiforme
Cited by: 33
Author(s): Manali Tilak, Jennifer Holborn, Laura A. New, Jasmin Lalonde, Nina Jones
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.668623

The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns
Cited by: 16
Author(s): Alexandre Hild Aono, Ricardo José Gonzaga Pimenta, Ana Letycia Basso Garcia, Fernando Henrique Correr, Guilherme Kenichi Hosaka, Marishani Marin Carrasco, Cláudio Benício Cardoso-Silva, Melina Cristina Mancini, Danilo Augusto Sforça, Lucas Borges dos Santos, James Shiniti Nagai, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Monalisa Sampaio Carneiro, Thiago Willian Almeida Balsalobre, Marcos G. Quiles, Welison Andrade Pereira, Gabriel Rodrigues Alves Margarido, Anete Pereira de Souza
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms22158193

Regulatory Network Analysis in Estradiol-Treated Human Endothelial Cells
Cited by: 0
Author(s): Daniel Pérez‐Cremades, Ana B. Paes, Xavier Vidal‐Gómez, Ana Mompeón, Carlos Hermenegildo, Susana Novella
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: over 8 years ago

10.1097/MD.0000000000024660

The effectiveness of problem-based learning in gynecology and obstetrics education in China
Cited by: 2
Author(s): Siwei Bi, Ruiqi Liu, Jingyi Li, Jun Gu
Software Mentions: 3
Published: over 5 years ago

10.3389/fnmol.2021.701977

Expression Analysis of Ermin and Listerin E3 Ubiquitin Protein Ligase 1 Genes in Autistic Patients
Cited by: 5
Author(s): Shadi Shiva, Jalal Gharesouran, Hani Sabaie, Mohammad Reza Asadi, Shahram Arsang‐Jang, Mohammad Taheri, Maryam Rezazadeh
Software Mentions: 3
Published: almost 5 years ago

10.1128/mSphereDirect.00187-17

Phylogenetic Analyses Suggest that Factors Other Than the Capsid Protein Play a Role in the Epidemic Potential of GII.2 Norovirus
Cited by: 79
Author(s): Kentaro Tohma, Cara J. Lepore, Lauren A. Ford-Siltz, Gabriel I. Parra
Software Mentions: 3
Published: almost 9 years ago

10.1128/mBio.01228-21

Alternative Transmission Patterns in Independently Acquired Nutritional Cosymbionts of Dictyopharidae Planthoppers
Cited by: 15
Author(s): Anna Michalik, Diego Castillo Franco, Michał Kobiałka, Teresa Szklarzewicz, Adam Stroiński, Piotr Łukasik
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0101777

Rapid Phenotypic and Genomic Change in Response to Therapeutic Pressure in Prostate Cancer Inferred by High Content Analysis of Single Circulating Tumor Cells
Cited by: 123
Author(s): Angel E. Dago, Asya Stepansky, Anders Carlsson, Madelyn Luttgen, Jude Kendall, Timour Baslan, Anand Kolatkar, Michael Wigler, Kelly Bethel, Mitchell E. Gross, James Hicks, Peter Kühn
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmed.2021.693188

Synbiotic Therapy Prevents Nosocomial Infection in Critically Ill Adult Patients: A Systematic Review and Network Meta-Analysis of Randomized Controlled Trials Based on a Bayesian Framework
Cited by: 8
Author(s): Cong Liu, Ling Liu, Zhiwei Gao, Junwei Zhang, Hui Chen, Shaolei Ma, Airan Liu, Min Mo, Changde Wu, Dongyu Chen, Songqiao Liu, Jianfeng Xie, Yingzi Huang, Haibo Qiu, Yi Yang
Software Mentions: 3
Published: almost 5 years ago

10.1002/jimd.12277

Hearing loss in patients with mucopolysaccharidoses ‐1 and ‐6 after hematopoietic cell transplantation: A longitudinal analysis
Cited by: 4
Author(s): Brigitte T.A. van den Broek, A.L. Smit, Jaap Jan Boelens, Peter M. van Hasselt
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms22031252

Gene Expression Responses to Sequential Nutrient Deficiency Stresses in Soybean
Cited by: 7
Author(s): Jamie A. O’Rourke, Michelle A. Graham
Software Mentions: 3
Published: over 5 years ago

10.1128/mBio.02136-21

Protospacer-Adjacent Motif Specificity during Clostridioides difficile Type I-B CRISPR-Cas Interference and Adaptation
Cited by: 3
Author(s): Anna Maikova, Pierre Boudry, Anna Shiriaeva, Aleksandra Vasileva, Anaïs Boutserin, Sofia Medvedeva, Ekaterina Semenova, Konstantin Severinov, Olga Soutourina
Software Mentions: 3
Published: almost 5 years ago

10.3389/fendo.2021.721812

A Novel Diagnostic Predictive Model for Idiopathic Short Stature in Children
Cited by: 4
Author(s): Jinghong Yuan, Du Zhi, Zhiwen Wu, Yanqin Yang, Xigao Cheng, Xijuan Liu, Jingyu Jia
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0207985

Disruption of the microbiota affects physiological and evolutionary aspects of insecticide resistance in the German cockroach, an important urban pest
Cited by: 40
Author(s): Jose E. Pietri, Connor R. Tiffany, Dangsheng Liang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0245524

CKMT1B is a potential prognostic biomarker and associated with immune infiltration in Lower-grade glioma
Cited by: 8
Author(s): Huadi Shi, Yiyun Song, Zeqing Song, Ching‐Wen Huang
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.712167

Genetic Dissection of Grain Yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel
Cited by: 3
Author(s): Anuj Kumar, Chirag Gupta, Julie Thomas, Andy Pereira
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2021.715377

Homo- and Dikaryons of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Differ in Life History Strategy
Cited by: 14
Author(s): Edward Umberto Serghi, Vasilis Kokkoris, Calvin Cornell, Jeremy R. Dettman, Franck Stefani, Nicolas Corradi
Software Mentions: 3
Published: almost 5 years ago

10.1128/mBio.00598-21

Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small Numbers
Cited by: 7
Author(s): Ruben Dyrhovden, Martin Rippin, Kjell Øvrebø, Randi Nygaard, Elling Ulvestad, Øyvind Kommedal
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2019.01263

Identification and Validation of Candidate Genes Involved in Fatty Acid Content in Oil Palm by Genome-Wide Association Analysis
Cited by: 20
Author(s): Wei Xia, Tingting Luo, Yajing Dou, Wei Zhang, Annaliese S. Mason, Dong Huang, Xiaolong Huang, Wenqi Tang, Jihua Wang, Chunyu Zhang, Yong Xiao
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2021.587640

Fine Mapping of Leaf Trichome Density Revealed a 747-kb Region on Chromosome 1 in Cold-Hardy Hybrid Wine Grape Populations
Cited by: 10
Author(s): Yin Lu, Avinash Karn, Lance Cadle‐Davidson, Cheng Zou, Anna Underhill, Paul Atkins, Erin L. Treiber, Daniel F. Voytas, Matthew D. Clark
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo11040206

Spinal Muscular Atrophy after Nusinersen Therapy: Improved Physiology in Pediatric Patients with No Significant Change in Urine, Serum, and Liquor 1H-NMR Metabolomes in Comparison to an Age-Matched, Healthy Cohort
Cited by: 14
Author(s): Leon Deutsch, Damjan Osredkar, Janez Plavec, Blaž Stres
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0246135

Estimation of time of HIV seroconversion using a modified CD4 depletion model
Cited by: 4
Author(s): Viviane D. Lima, Lu Wang, Paul Sereda, Taylor McLinden, Rolando Barrios, Julio S. G. Montaner
Software Mentions: 3
Published: over 5 years ago

10.3390/genes12091374

Identification of Long Non-Coding RNAs Involved in Porcine Fat Deposition Using Two High-Throughput Sequencing Methods
Cited by: 5
Author(s): Yibing Liu, Ying Yu, Ai Hong, Fengxia Zhang, Xitong Zhao, Huatao Liu, Yong Shi, Kai Xing, Chuduan Wang
Software Mentions: 3
Published: almost 5 years ago

10.1128/mBio.00296-21

Dynamics of the Bacillus subtilis Min System
Cited by: 11
Author(s): Helge Feddersen, Laeschkir Würthner, Erwin Frey, Marc Bramkamp
Software Mentions: 3
Published: about 5 years ago

10.3390/metabo11060364

Towards Standards for Human Fecal Sample Preparation in Targeted and Untargeted LC-HRMS Studies
Cited by: 8
Author(s): Farideh Hosseinkhani, Anne-Charlotte Dubbelman, Naama Karu, Amy C. Harms, Thomas Hankemeier
Software Mentions: 3
Published: about 5 years ago

10.1186/s12870-021-03197-x

Geographic distribution of the E1 family of genes and their effects on reproductive timing in soybean
Cited by: 5
Author(s): Nicholas Dietz, Rachel Combs-Giroir, Grace Cooper, Minviluz G. Stacey, Carrie Miranda, Kristin Bilyeu
Software Mentions: 3
Published: over 4 years ago

10.1128/mBio.01292-20

Erwinia carotovora Quorum Sensing System Regulates Host-Specific Virulence Factors and Development Delay in Drosophila melanogaster
Cited by: 8
Author(s): Filipe J. D. Vieira, Pol Nadal‐Jimenez, Luı́s Teixeira, Karina B. Xavier
Software Mentions: 3
Published: almost 6 years ago

10.3390/metabo10050205

Sedentariness and Urinary Metabolite Profile in Type 2 Diabetic Patients, a Cross-Sectional Study
Cited by: 7
Author(s): Elisa Benetti, Erica Liberto, Davide Bressanello, Valentina Bordano, Arianna Carolina Rosa, Gianluca Miglio, Jonida Haxhi, Giuseppe Pugliese, Stefano Balducci, Chiara Emilia Irma Cordero
Software Mentions: 3
Published: about 6 years ago

10.3390/metabo9070142

1H-NMR Metabolomics Identifies Significant Changes in Metabolism over Time in a Porcine Model of Severe Burn and Smoke Inhalation
Cited by: 5
Author(s): Cole Hendrickson, Katharina Linden, Stefan Kreyer, Gregory J. Beilman, Vittorio Scaravilli, Daniel Wendorff, Corina Necsoiu, Andriy I. Batchinsky, Leopoldo C. Cancio, Kevin K. Chung, Elizabeth R. Lusczek
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00442-020-04678-w

Bitter fruits of hard labour: diet metabarcoding and telemetry reveal that urban songbirds travel further for lower-quality food
Cited by: 28
Author(s): Crinan Jarrett, Luke L. Powell, Heather McDevitt, Barbara Helm, Andreanna J. Welch
Software Mentions: 3
Published: about 6 years ago

10.3390/metabo11050331

Cluster Thinning and Vineyard Site Modulate the Metabolomic Profile of Ribolla Gialla Base and Sparkling Wines
Cited by: 10
Author(s): Domen Škrab, Paolo Sivilotti, Piergiorgio Comuzzo, Sabrina Voce, Francesco Degano, Silvia Carlin, Panagiotis Arapitsas, Domenico Masuero, Urška Vrhovšek
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0151872

D-Alanine-Controlled Transient Intestinal Mono-Colonization with Non-Laboratory-Adapted Commensal E. coli Strain HS
Cited by: 10
Author(s): Miguelangel Cuenca, S. Pfister, Stefanie Buschor, Firuza Bayramova, Sara B. Hernández, Felipe Cava, Erkin Kuru, Michael S. Van Nieuwenhze, Yves V. Brun, Fernanda Coelho, Siegfried Hapfelmeier
Software Mentions: 3
Published: over 10 years ago

10.1007/s00267-017-0889-1

Macroinvertebrate Taxonomic and Functional Trait Compositions within Lotic Habitats Affected By River Restoration Practices
Cited by: 30
Author(s): James C. White, Matthew J. Hill, Melanie A. Bickerton, Paul J. Wood
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0219706

Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics
Cited by: 23
Author(s): David Couvin, Yann Reynaud, Nalin Rastogi
Software Mentions: 3
Published: almost 7 years ago

10.1590/1678-4685-GMB-2018-0351

A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines
Cited by: 1
Author(s): Gabriela P. Branco, Renan Valieris, Lucas Venezian Povoa, Luíza Ferreira de Araújo, Gustavo Ribeiro Fernandes, Jorge Estefano Santana de Souza, María Galli de Amorim, Elisa Napolitano Ferreira, Israel Tojal da Silva, Diana Noronha Nunes, Emmanuel Dias-Neto
Software Mentions: 3
Published: over 6 years ago

10.1111/1462-2920.13954

Application of stable‐isotope labelling techniques for the detection of active diazotrophs
Cited by: 40
Author(s): Roey Angel, Christopher Panhölzl, Raphael Gabriel, Craig W. Herbold, Wolfgang Wanek, Andreas Richter, Stephanie A. Eichorst, Dagmar Woebken
Software Mentions: 3
Published: over 8 years ago

10.1111/1462-2920.14913

Extremely halophilic archaeal communities are resilient to short‐term entombment in halite
Cited by: 12
Author(s): Tom J. C. Huby, Dave R. Clark, Boyd A. McKew, Terry J. McGenity
Software Mentions: 3
Published: over 6 years ago

10.3389/fcimb.2020.617998

High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondii
Cited by: 9
Author(s): Benedikt M. Markus, Benjamin S. Waldman, Hernan Lorenzi, Sebastian Lourido
Software Mentions: 3
Published: over 5 years ago

10.3389/fmed.2021.667525

FABP5, a Novel Immune-Related mRNA Prognostic Marker and a Target of Immunotherapy for Multiple Myeloma
Cited by: 7
Author(s): Haipeng Jia, Xiaofen Zhang, Xinxin Liu, Ruifang Qiao, Yan Liu, Sulong Lv, Hongbo Zhu, Jie Wang, Qiuhong Kong, Hong Zhang, Zhirong Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-95099-z

Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge
Cited by: 27
Author(s): Jorge Domínguez, Manuel Aira, Keith A. Crandall, Marcos Pérez‐Losada
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12711-019-0456-8

Removal of alleles by genome editing (RAGE) against deleterious load
Cited by: 45
Author(s): Martin Johnsson, R. Chris Gaynor, Janez Jenko, Gregor Gorjanc, Dirk-Jan de Koning, John M. Hickey
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-94536-3

Beneficial insects are associated with botanically rich margins with trees on small farms
Cited by: 12
Author(s): Sarah E. J. Arnold, Filemon Elisante, Prisila A. Mkenda, Yolice Tembo, Patrick A. Ndakidemi, Geoff M. Gurr, Iain Darbyshire, Steven R. Belmain, Philip C. Stevenson
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-94337-8

Plant uptake of nitrogen adsorbed to biochars made from dairy manure
Cited by: 5
Author(s): Leilah Krounbi, Akio Enders, J. L. Gaunt, Margaret R. Ball, Johannes Lehmann
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12711-021-00608-3

Identification of QTL regions and candidate genes for growth and feed efficiency in broilers
Cited by: 14
Author(s): Wei Li, Maiqing Zheng, Guiping Zhao, Jie Wang, Jie Liu, Shunli Wang, Furong Feng, Dawei Liu, Dan Zhu, Qinghe Li, Liping Guo, Yuming Guo, Ranran Liu, Jie Wen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0187310

Evaluation of miRNA-196a2 and apoptosis-related target genes: ANXA1, DFFA and PDCD4 expression in gastrointestinal cancer patients: A pilot study
Cited by: 32
Author(s): Manal S. Fawzy, Eman A. Toraih, Afaf T. Ibrahiem, Hala Abdeldayem, Amany O. Mohamed, Mohamed M. Abdel-Daim
Software Mentions: 3
Published: over 8 years ago

10.3389/fimmu.2020.598636

Early Cytokine Induction Upon Pseudomonas aeruginosa Infection in Murine Precision Cut Lung Slices Depends on Sensing of Bacterial Viability
Cited by: 11
Author(s): Ulrike Kolbe, Buqing Yi, Tanja Poth, Amy E. Saunders, Sébastien Boutin, Alexander H. Dalpke
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-94205-5

On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples
Cited by: 13
Author(s): Shan Sun, Xiangzhu Zhu, Xiang Huang, Harvey J. Murff, Reid M. Ness, Douglas L. Seidner, Alicia Sorgen, Ivory C. Blakley, Chang Yu, Qi Dai, M. Andrea Azcárate-Peril, Martha J. Shrubsole, Anthony A. Fodor
Software Mentions: 3
Published: almost 5 years ago

10.1111/1462-2920.14043

Genomic insights into the <i>Acidobacteria</i> reveal strategies for their success in terrestrial environments
Cited by: 197
Author(s): Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig W. Herbold, Thomas Rattei, Dagmar Woebken
Software Mentions: 3
Published: over 8 years ago

10.3390/ijerph18179081

Cognitive Remediation in Virtual Environments for Patients with Schizophrenia and Major Depressive Disorder: A Feasibility Study
Cited by: 1
Author(s): Adéla Plechatá, Lukáš Hejtmánek, Martina Bednářová, Iveta Fajnerová
Software Mentions: 3
Published: almost 5 years ago

10.3389/fimmu.2017.00723

Unperturbed Cytotoxic Lymphocyte Phenotype and Function in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Patients
Cited by: 15
Author(s): Jakob Theorell, Indrė Bilevičiūtė-Ljungar, Bianca Tesi, Heinrich Schlums, Mette Sophie Johnsgaard, Babak Asadi-Azarbaijani, Elin Bolle Strand, Yenan T. Bryceson
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-021-94345-8

Temporal trajectory of biofluid markers in Parkinson’s disease
Cited by: 9
Author(s): Min Seok Baek, Myung Sik Lee, Han‐Kyeol Kim, Chul Hyoung Lyoo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12917-020-02688-7

Transition of microbiota in chicken cecal droppings from commercial broiler farms
Cited by: 10
Author(s): Nachiko Takeshita, Takayasu Watanabe, Kasumi Ishida-Kuroki, Tsutomu Sekizaki
Software Mentions: 3
Published: over 5 years ago

10.1186/gb-2012-13-12-r113

Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data
Cited by: 29
Author(s): Matthew Parker, Xiang Chen, Armita Bahrami, James Dalton, Michael Rusch, Gang Wu, John Easton, Nai Kong V. Cheung, Michael A. Dyer, Elaine R. Mardis, Richard K. Wilson, Charles G. Mullighan, Richard J. Gilbertson, Suzanne J. Baker, Gerard P. Zambetti, David W. Ellison, James R. Downing, Jinghui Zhang
Software Mentions: 3
Published: over 14 years ago

10.1038/s41598-021-94019-5

Multi-omics integration of methyltransferase-like protein family reveals clinical outcomes and functional signatures in human cancer
Cited by: 26
Author(s): Ion J. Campeanu, Yuanyuan Jiang, Lanxin Liu, Maksymilian Pilecki, Alvina Najor, Era Cobani, Morenci Manning, Xiaohong Mary Zhang, Zeng-Quan Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12870-019-1755-5

Physiological responses of Lepidium meyenii plants to ultraviolet-B radiation challenge
Cited by: 11
Author(s): Thais Huarancca Reyes, Andrea Scartazza, Antonio Pompeiano, Lorenzo Guglielminetti
Software Mentions: 3
Published: about 7 years ago

10.1038/s41388-020-01470-1

The Greatwall kinase safeguards the genome integrity by affecting the kinome activity in mitosis
Cited by: 8
Author(s): Xavier Bisteau, Jo Ann Lee, Vinayaka Srinivas, Joanna H.S. Lee, Joanna Niska-Blakie, Gifford Tan, Shannon Yap, Kevin W Hom, C. K. Wong, Jeongjun Chae, Loo Chien Wang, Jin-Ho Kim, Giulia Rancati, Radoslaw M. Sobota, Chris Soon Heng Tan, Philipp Kaldis
Software Mentions: 3
Published: over 5 years ago

10.1186/gb-2014-15-6-r77

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
Cited by: 388
Author(s): Isobel A. P. Parkin, ChuShin Koh, Haibao Tang, Stephen J. Robinson, Sateesh Kagale, Wayne E. Clarke, Chris Town, John Nixon, Vivek Krishnakumar, Shelby L. Bidwell, France Denœud, Harry Belcram, Matthew G. Links, Jérémy Just, Carling Clarke, Tricia Bender, Terry Huebert, Annaliese S. Mason, J. Chris Pires, Guy C. Barker, Jonathan D. Moore, Paul Walley, Sahana Manoli, Jacqueline Batley, David Edwards, Matthew N. Nelson, Xiyin Wang, Andrew H. Paterson, Graham J. King, Ian Bancroft, Boulos Chalhoub, Andrew Sharpe
Software Mentions: 3
Published: over 12 years ago

10.1038/s41598-021-93557-2

All shallow coastal habitats matter as nurseries for Mediterranean juvenile fish
Cited by: 14
Author(s): Adrien Cheminée, Laurence Le Diréach, Élodie Rouanet, Patrick Astruch, Adrien Goujard, Aurelie Blanfuné, Denis Bonhomme, Laureline Chassaing, Jean-Yves Jouvenel, Sandrine Ruitton, Thierry Thibaut, Mireille Harmelin-Vivien
Software Mentions: 3
Published: almost 5 years ago

10.3389/fimmu.2019.02762

Hypoxia Inducible Factor 1α Inhibits the Expression of Immunosuppressive Tryptophan-2,3-Dioxygenase in Glioblastoma
Cited by: 21
Author(s): Soumya R. Mohapatra, Ahmed Sadik, Lars-Oliver Tykocinski, Jörn Dietze, Gernot Poschet, Ines Heiland, Christiane A. Opitz
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0213175

Reproducibility of sublingual microcirculation parameters obtained from sidestream darkfield imaging
Cited by: 13
Author(s): Luca Valerio, Ron J.G. Peters, Aeilko H. Zwinderman, Sara‐Joan Pinto‐Sietsma
Software Mentions: 3
Published: over 7 years ago

10.1186/s12903-021-01719-5

Core of the saliva microbiome: an analysis of the MG-RAST data
Cited by: 8
Author(s): Simone Santos Oliveira, Rafaela Rie Nishiyama, Claudio A C Trigo, Ana Luíza Mattos‐Guaraldi, Alberto M. R. Dávila, Rodrigo Desessards Jardim, Flávio Henrique Baggio Aguiar
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41388-021-01897-0

Dexamethasone suppresses immune evasion by inducing GR/STAT3 mediated downregulation of PD-L1 and IDO1 pathways
Cited by: 33
Author(s): Zhen Xiang, Zhijun Zhou, Shuzheng Song, Jun Li, Jun Ji, Ranlin Yan, Jiexuan Wang, Wei Cai, Wenjun Hu, Lu Zang, Zhenggang Zhu, Zhen Zhang, Min Li, Yingyan Yu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-93142-7

Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing
Cited by: 3
Author(s): Zoltán Maróti, Dóra Tombácz, Norbert Moldován, Gábor Torma, Victoria A Jefferson, Zsolt Csabai, Gábor Gulyás, Ákos Dörmő, Miklós Boldogkői, Tibor Kalmár, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13059-015-0697-y

The impact of read length on quantification of differentially expressed genes and splice junction detection
Cited by: 94
Author(s): Sagar Chhangawala, Gabe Rudy, Christopher E. Mason, Jeffrey Rosenfeld
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-021-93619-5

Endothelial cell-derived Apelin inhibits tumor growth by altering immune cell localization
Cited by: 3
Author(s): Liuying Hu, Yumiko Hayashi, Hiroyasu Kidoya, Nobuyuki Takakura
Software Mentions: 3
Published: almost 5 years ago

10.1007/s11306-020-01653-7

Metabolomics analyses in non-diabetic middle-aged individuals reveal metabolites impacting early glucose disturbances and insulin sensitivity
Cited by: 8
Author(s): Maxime M. Bos, Raymond Noordam, Kate Bennett, Marian Beekman, Dennis O. Mook‐Kanamori, Ko Willems van Dijk, P. Eline Slagboom, Torbjörn Lundstedt, Izabella Surowiec, Diana van Heemst
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-015-0784-0

WU-CRISPR: characteristics of functional guide RNAs for the CRISPR/Cas9 system
Cited by: 248
Author(s): Nathan Wong, Wei Jun Liu, Xiaowei Wang
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0241119

Chytridiomycosis-induced mortality in a threatened anuran
Cited by: 9
Author(s): Andrea J. Adams, Allan P. Pessier, Peggy Cranston, Robert L. Grasso
Software Mentions: 3
Published: over 5 years ago

10.3389/fcimb.2018.00420

Ascitic Bacterial Composition Is Associated With Clinical Outcomes in Cirrhotic Patients With Culture-Negative and Non-neutrocytic Ascites
Cited by: 11
Author(s): Yanfei Chen, Jing Guo, Ding Shi, Daiqiong Fang, Chunlei Chen, Lanjuan Li
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-021-93162-3

Statistical and machine learning methods for analysis of multiplex protein data from a novel proximity extension assay in patients with ST-elevation myocardial infarction
Cited by: 1
Author(s): Emil Maag, Archana Kulasingam, Erik Lerkevang Grove, Kamilla Pedersen, Steen Dalby Kristensen, Anne‐Mette Hvas
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-92783-y

Evolution, heterogeneity and global dispersal of cosmopolitan genotype of Dengue virus type 2
Cited by: 24
Author(s): Surya Pavan Yenamandra, Carmen Koo, Suzanna Chiang, Han Shi Jeri Lim, Zhen Yuan Yeo, Lee Ching Ng, Hapuarachchige Chanditha Hapuarachchi
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.mex.2019.09.013

Low-cost automatic temperature monitoring system with alerts for laboratory rearing units
Cited by: 3
Author(s): François Rebaudo, Romain Benoist
Software Mentions: 3
Published: over 7 years ago

10.3389/fneur.2017.00210

Impaired Baroreflex Sensitivity after Bilateral Convulsive Seizures in Patients with Focal Epilepsy
Cited by: 24
Author(s): Kevin G. Hampel, Christian E. Elger, Rainer Surges
Software Mentions: 3
Published: about 9 years ago

10.1186/s40793-019-0347-1

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-017-1157-7

Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology
Cited by: 13
Author(s): Sophie Pantalacci, Laurent Guéguen, Coralie Petit, Anne Lambert, Renata Peterková, Marie Sémon
Software Mentions: 3
Published: over 9 years ago

10.1111/1751-7915.13693

Effects of growth‐promoting rhizobacteria on maize growth and rhizosphere microbial community under conservation tillage in Northeast China
Cited by: 38
Author(s): La Chen, Zhanhong Hao, Keke Li, Ye Sha, En Tao Wang, Xinhua Sui, Guohua Mi, Chang Fu Tian, Wenxin Chen
Software Mentions: 3
Published: over 5 years ago

10.1038/oncsis.2016.88

The role of the cancer stem cell marker CD271 in DNA damage response and drug resistance of melanoma cells
Cited by: 50
Author(s): Torben Redmer, I Walz, Bertram Klinger, Slim Khouja, Yvonne Welte, Reinhold Schäfer, Christian Regenbrecht
Software Mentions: 3
Published: over 9 years ago

10.3389/fneur.2021.633068

The Cologne Picture Naming Test for Language Mapping and Monitoring (CoNaT): An Open Set of 100 Black and White Object Drawings
Cited by: 2
Author(s): Carolin Weiß Lucas, J. Pieczewski, Sophia Kochs, Charlotte Nettekoven, Christian Grefkes, Roland Goldbrunner, Kristina Jonas
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21238934

Identification and Characterization of PLATZ Transcription Factors in Wheat
Cited by: 20
Author(s): Yuxin Fu, Mengping Cheng, Maolian Li, Xiaojiang Guo, Yongrui Wu, Jirui Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0228521

Lipidomics of human adipose tissue reveals diversity between body areas
Cited by: 10
Author(s): Naba Al-Sari, Tommi Suvitaival, Ismo Mattila, Ashfaq Ali, Linda Ahonen, Kajetan Trošt, Trine Henriksen, Flemming Pociot, Lars Ove Dragsted, Cristina Legido‐Quigley
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0215332

Azospirillum brasilense promotes increases in growth and nitrogen use efficiency of maize genotypes
Cited by: 101
Author(s): Douglas Mariani Zeffa, Luiz Júnior Perini, Mayara Barbosa Silva, Nicholas Vieira de Sousa, Carlos Alberto Scapim, André Luíz Martinez de Oliveira, Antônio Teixeira do Amaral Júnior, Leandro Simões Azeredo Gonçalves
Software Mentions: 3
Published: about 7 years ago

10.3389/fneur.2020.00879

Ocular Vestibular-Evoked Myogenic Potential Amplitudes Elicited at 4 kHz Optimize Detection of Superior Semicircular Canal Dehiscence
Cited by: 9
Author(s): Emma Tran, Austin Swanson, Jeffrey D. Sharon, Yona Vaisbuch, Nikolas H. Blevins, Matthew B. Fitzgerald, Kristen Steenerson
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12917-020-2262-5

Betulinic acid shows anticancer activity against equine melanoma cells and permeates isolated equine skin in vitro
Cited by: 11
Author(s): Lisa A. Weber, Jessica Meißner, Julien Delarocque, Jutta Kalbitz, Karsten Feige, Manfred Kietzmann, Anne Michaelis, Ralf Paschke, Julia Michael, Barbara Pratscher, Jessika‐M. V. Cavalleri
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0258019

Wave-wise comparative genomic study for revealing the complete scenario and dynamic nature of COVID-19 pandemic in Bangladesh
Cited by: 12
Author(s): Ishtiaque Ahammad, Mohammad Uzzal Hossain, Ashikur Rahman, Zeshan Mahmud Chowdhury, Arittra Bhattacharjee, Keshob Chandra Das, Chaman Ara Keya, Md. Salimullah
Software Mentions: 3
Published: over 4 years ago

10.3389/fcimb.2019.00409

Gut Microbiota Dysbiosis and Increased Plasma LPS and TMAO Levels in Patients With Preeclampsia
Cited by: 81
Author(s): Jing Wang, Xunke Gu, Jing Yang, Yuan Wei, Yangyu Zhao
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0256138

Evaluating the distribution of African swine fever virus within a feed mill environment following manufacture of inoculated feed
Cited by: 6
Author(s): C. Grace Elijah, Jessie D. Trujillo, Cassandra K Jones, Natasha N. Gaudreault, Charles R. Stark, Konner Cool, Chad B. Paulk, Taehyun Kwon, J. C. Woodworth, Igor Morozov, Carmina Gallardo, Jordan T Gebhardt, Jürgen A. Richt
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-92304-x

Interaction between genetic predisposition, smoking, and dementia risk: a population-based cohort study
Cited by: 6
Author(s): Na Zhang, Janice M Ranson, Zhi‐Jie Zheng, Eilís Hannon, Zhenwei Zhou, Xuejun Kong, David J. Llewellyn, Dan King, Jie Huang
Software Mentions: 3
Published: about 5 years ago

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