cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fbioe.2020.00176

MicroRNAs Associated With Colon Cancer: New Potential Prognostic Markers and Targets for Therapy
Cited by: 25
Author(s): Junfeng Zhu, Ying Xü, Shanshan Liu, Qiao Li, Jianqiang Sun, Qi Zhao
Software Mentions: 3
Published: over 6 years ago

10.3390/cancers13020189

The Caspase-1/IL-18 Axis of the Inflammasome in Tumor Cells: A Modulator of the Th1/Tc1 Response of Tumor-Infiltrating T Lymphocytes in Colorectal Cancer
Cited by: 8
Author(s): Linda Bilonda Mutala, Cécile Deleine, Matilde Karakachoff, Delphine Dansette, Kathleen Ducoin, Romain Oger, Olivia Rousseau, J. Podevin, Emilie Duchalais, P Fourquier, Wassila El Alami Thomas, Pierre‐Antoine Gourraud, Jaafar Bennouna, Camille Brochier, Nadine Gervois, Céline Bossard, Anne Jarry
Software Mentions: 3
Published: over 5 years ago

10.3389/fbioe.2020.604793

Combinations of PCR and Isothermal Amplification Techniques Are Suitable for Fast and Sensitive Detection of SARS-CoV-2 Viral RNA
Cited by: 18
Author(s): Dmitriy A Varlamov, Konstantin A. Blagodatskikh, Evgeniya V. Smirnova, V. M. Kramarov, Konstantin B. Ignatov
Software Mentions: 3
Published: almost 6 years ago

10.3390/toxins13090666

Is Toxin-Producing Planktothrix sp. an Emerging Species in Lake Constance?
Cited by: 4
Author(s): Corentin Fournier, Eva Riehle, Daniel R. Dietrich, David Schleheck
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08547-4

Correlation between vascular endothelial growth factor pathway and immune microenvironment in head and neck squamous cell carcinoma
Cited by: 4
Author(s): Chao Zhu, Liqun Gu, Zelong Liu, Li Jiang, Meiling Yao, Changyun Fang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0154741

Stability and Longevity in the Publication Careers of U.S. Doctorate Recipients
Cited by: 14
Author(s): Cathelijn J. F. Waaijer, Benoît Macaluso, Cassidy R. Sugimoto, Vincent Larivière
Software Mentions: 3
Published: over 10 years ago

10.1016/j.ijpddr.2021.01.001

TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries
Cited by: 6
Author(s): Alexander Y.F. Lam, Daniel Vuong, Aaron R. Jex, Andrew M. Piggott, Ernest Lacey, Samantha J. Emery-Corbin
Software Mentions: 3
Published: over 5 years ago

10.1186/s13041-015-0104-3

Brain transcriptome profiles in mouse model simulating features of post-traumatic stress disorder
Cited by: 41
Author(s): Seid Muhie, Aarti Gautam, James L. Meyerhoff, Nabarun Chakraborty, Rasha Hammamieh, Marti Jett
Software Mentions: 3
Published: over 11 years ago

10.3389/fbioe.2020.00192

Microbial Community Redundancy and Resilience Underpins High-Rate Anaerobic Treatment of Dairy-Processing Wastewater at Ambient Temperatures
Cited by: 20
Author(s): Lara M. Paulo, Juan Castilla-Archilla, Javier Ramiro-García, José Antonio Escamez-Picón, Dermot Hughes, Thérèse Mahony, Michael J. Murray, Paul Wilmes, Vincent O’Flaherty
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.8205

Reduced GRAMD1C expression correlates to poor prognosis and immune infiltrates in kidney renal clear cell carcinoma
Cited by: 12
Author(s): Haiyan Hao, Ziheng Wang, Shengxiang Ren, Hanyu Shen, Hua Xian, Wenliang Ge, Wei Wang
Software Mentions: 3
Published: over 6 years ago

10.3390/toxins13020124

Electric Blue: Molecular Evolution of Three-Finger Toxins in the Long-Glanded Coral Snake Species Calliophis bivirgatus
Cited by: 9
Author(s): Daniel Dashevsky, Darin R. Rokyta, Nathaniel Frank, Amanda Nouwens, Bryan G. Fry
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-016-0765-2

Competitive males have higher quality sperm in a monogamous social bee
Cited by: 12
Author(s): Sheina Koffler, Hiára Marques Meneses, Astrid de Matos Peixoto Kleinert, Rodolfo Jaffé
Software Mentions: 3
Published: almost 10 years ago

10.1016/j.cell.2020.09.038

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity
Cited by: 1,368
Author(s): Carolyn Rydyznski Moderbacher, Sydney I. Ramirez, Jennifer M. Dan, Alba Grifoni, Kathryn M. Hastie, Daniela Weiskopf, Simon Bélanger, Robert G. Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G. Crotty, Cheryl Kim, Stephen A. Rawlings, José Mateus, Long Ping Victor Tse, April Frazier, Ralph S. Baric, Bjoern Peters, Jason A. Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty
Software Mentions: 3
Published: almost 6 years ago

10.3390/toxins11070431

Association of Nrf2, SOD2 and GPX1 Polymorphisms with Biomarkers of Oxidative Distress and Survival in End-Stage Renal Disease Patients
Cited by: 22
Author(s): Djurdja Jerotić, Marija Matić, Sonja Šuvakov, Katarina Vučićević, Tatjana Damjanović, Ana Savić-Radojević, Marija Plješa-Ercegovac, Vesna Ćorić, Aleksandra Stefanović, Jasmina Ivanišević, Zorana Jelić‐Ivanović, Lana McClements, Nada Dimković, Tatjana Simić
Software Mentions: 3
Published: about 7 years ago

10.1186/s12862-014-0231-y

Osteohistological variation in growth marks and osteocyte lacunar density in a theropod dinosaur (Coelurosauria: Ornithomimidae)
Cited by: 44
Author(s): Thomas M. Cullen, David C. Evans, Michael J. Ryan, Philip J. Currie, Yoshiyuki Kobayashi
Software Mentions: 3
Published: over 11 years ago

10.3390/toxics8040087

Systematic Assessment of Exposure Variations on Observed Bioactivity in Zebrafish Chemical Screening
Cited by: 9
Author(s): Lindsay Wilson, Lisa Truong, Michael T. Simonich, Robert L. Tanguay
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-230X-13-148

Treatment of chronic HCV genotype 1 infection with telaprevir: a Bayesian mixed treatment comparison of fixed-length and response-guided treatment regimens in treatment-naïve and –experienced patients
Cited by: 3
Author(s): Armin D. Goralczyk, Silke Cameron, Ahmad Amanzada
Software Mentions: 3
Published: almost 13 years ago

10.1016/j.cell.2019.06.006

Human Artificial Chromosomes that Bypass Centromeric DNA
Cited by: 71
Author(s): Glennis A. Logsdon, Craig W. Gambogi, Mikhail Liskovykh, Evelyne J. Barrey, Vladimir Larionov, Karen H. Miga, Patrick Heun, Ben E. Black
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0206855

Workload measurement for molecular genetics laboratory: A survey study
Cited by: 6
Author(s): Enrico Tagliafico, Isabella Bernardis, Marina Grasso, Maria Rosaria D’Apice, Cristina Lapucci, Annalisa Botta, Daniela Giachino, Maria Marinelli, Paola Primignani, Silvia Russo, Ilaria Sani, Manuela Seia, Sergio Fini, Paola Rimessi, Elena Tenedini, Anna Ravani, Maurizio Genuardi, Alessandra Ferlini
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.8333

Risk-sensitive foraging does not explain condition-dependent choices in settling reef fish larvae
Cited by: 0
Author(s): Emma E Bogdan, Andrea L Dingeldein, Deirdre Bertrand, Will White
Software Mentions: 3
Published: over 6 years ago

10.1111/pce.13481

Sulfate is transported at significant rates through the symbiosome membrane and is crucial for nitrogenase biosynthesis
Cited by: 24
Author(s): Sebastian Schneider, Arno Schintlmeister, Manuel Becana, Michael Wagner, Dagmar Woebken, Stefanie Wienkoop
Software Mentions: 3
Published: over 7 years ago

10.7150/thno.50051

Adenylosuccinate lyase is oncogenic in colorectal cancer by causing mitochondrial dysfunction and independent activation of NRF2 and mTOR-MYC-axis
Cited by: 17
Author(s): Stephanie Taha‐Mehlitz, Gaia Bianco, Mairene Coto‐Llerena, Venkatesh Kancherla, Glenn R. Bantug, John Gallon, Caner Ercan, Federica Panebianco, Serenella Eppenberger‐Castori, M. Strauß, Sebastian M. Staubli, Martin Bolli, Ralph Peterli, Matthias S. Matter, Luigi Terracciano, Markus von Flüe, Charlotte K.Y. Ng, Savas D. Soysal, Otto Kollmar, Salvatore Piscuoglio
Software Mentions: 3
Published: over 5 years ago

10.3389/fcvm.2018.00030

Postnatal and Adult Aortic Heart Valves Have Distinctive Transcriptional Profiles Associated With Valve Tissue Growth and Maintenance Respectively
Cited by: 10
Author(s): Emily Nordquist, Stephanie LaHaye, Casey Nagel, Joy Lincoln
Software Mentions: 3
Published: over 8 years ago

10.3389/fcvm.2020.597932

Expression Profiles of Circular RNA in Human Atrial Fibrillation With Valvular Heart Diseases
Cited by: 13
Author(s): Xiyu Zhu, Xingming Tang, Hoshun Chong, Hailong Cao, Fudong Fan, Jun Pan, Dongjin Wang, Qing Zhou
Software Mentions: 3
Published: almost 6 years ago

10.7150/thno.47001

LAMA4 upregulation is associated with high liver metastasis potential and poor survival outcome of Pancreatic Cancer
Cited by: 16
Author(s): Biao Zheng, Jianhua Qu, Kenoki Ohuchida, Haimin Feng, Siew Meng Chong, Zilong Yan, Yicui Piao, Peng Liu, Nan Sheng, Daiki Eguchi, Takao Ohtsuka, Kazuhiro Mizumoto, Zhong Liu, Shazib Pervaiz, Peng Gong, Masafumi Nakamura
Software Mentions: 3
Published: over 6 years ago

10.1186/s13578-019-0356-1

Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma
Cited by: 42
Author(s): Xiao Zhu, Hui Luo, Ying Xu
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00122-021-03805-2

Population genomics of Mediterranean oat (A. sativa) reveals high genetic diversity and three loci for heading date
Cited by: 8
Author(s): Francisco José Canales, Gracia Montilla-Bascón, Wubishet A. Bekele, Catherine Howarth, Tim Langdon, Nicolás Rispail, Nicholas A. Tinker, Elena Prats
Software Mentions: 3
Published: over 5 years ago

10.1093/molbev/msab103

The Evolution of Calcification in Reef-Building Corals
Cited by: 15
Author(s): Xin Wang, Didier Zoccola, Yi Jin Liew, Éric Tambutté, Guoxin Cui, Denis Allemand, Sylvie Tambutté, Manuel Aranda
Software Mentions: 3
Published: over 5 years ago

10.1186/s40942-020-00209-0

Topographic analysis of macular choriocapillaris flow deficits in diabetic retinopathy using swept–source optical coherence tomography angiography
Cited by: 17
Author(s): Isaac Gendelman, A. Yasin Alibhai, Eric M. Moult, Emily S. Levine, Phillip X. Braun, Nihaal Mehta, Yi Zhao, Akihiro Ishibazawa, Osama Sorour, Caroline R. Baumal, André J. Witkin, Elias Reichel, James G. Fujimoto, Jay S. Duker, Nadia K. Waheed
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2021.675411

Oncostatin M Maintains Naïve Pluripotency of mESCs by Tetraploid Embryo Complementation (TEC) Assay
Cited by: 0
Author(s): Xiaoying Ye, Chenglei Tian, Linlin Liu, Guofeng Feng, Kairang Jin, Haiying Wang, Jiyu Chen
Software Mentions: 3
Published: about 5 years ago

10.1186/s40594-021-00306-y

Am I getting through? Surveying students on what messages they recall from the first day of STEM classes
Cited by: 6
Author(s): Clara L. Meaders, Lillian G. Senn, Brian A. Couch, A. Kelly Lane, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, Michelle K. Smith
Software Mentions: 3
Published: about 5 years ago

10.1099/ijsem.0.004774

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
Cited by: 10
Author(s): Xiaoying Li, Jessica L. Sutter, Jacobo de la Cuesta-Zuluaga, Jillian L. Waters, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 3
Published: over 5 years ago

10.1186/s13578-021-00651-z

Incident disease associations with mosaic chromosomal alterations on autosomes, X and Y chromosomes: insights from a phenome-wide association study in the UK Biobank
Cited by: 11
Author(s): Shu-Hong Lin, Derek Brown, Birgit Rose, Felix R. Day, Olivia W. Lee, Seema Khan, Jada Hislop, Stephen J. Chanock, John R. B. Perry, Mitchell J. Machiela
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2021.694769

Comparison of Genome-Wide DNA Methylation Profiles of Human Fetal Tissues Conceived by in vitro Fertilization and Natural Conception
Cited by: 4
Author(s): Ye Liu, Xinzhu Li, Songchang Chen, Li Wang, Ya‐Jing Tan, Xiaocui Li, Lin Tang, Junyu Zhang, Dandan Wu, Yanting Wu, Xinmei Liu, Yimin Zhu, Jian‐Zhong Sheng, Jiexue Pan, Li Jin, He‐Feng Huang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-89267-4

Mitigating belief projection in explainable artificial intelligence via Bayesian teaching
Cited by: 26
Author(s): Scott Cheng‐Hsin Yang, Wai Keen Vong, Ravi B. Sojitra, Tomas Folke, Patrick Shafto
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89175-7

Concurrent X chromosome inactivation and upregulation during non-human primate preimplantation development revealed by single-cell RNA-sequencing
Cited by: 2
Author(s): Ana Luíza Cidral, Joana Carvalho Moreira de Mello, Joost Gribnau, Lygia V. Pereira
Software Mentions: 3
Published: over 5 years ago

10.1186/s13229-020-00371-0

Face individual identity recognition: a potential endophenotype in autism
Cited by: 21
Author(s): Ilaria Minio-Paluello, Giuseppina Porciello, Álvaro Pascual‐Leone, Simon Baron‐Cohen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13229-020-0318-9

Transcriptomics of Gabra4 knockout mice reveals common NMDAR pathways underlying autism, memory, and epilepsy
Cited by: 19
Author(s): Cui-Xia Fan, Yue Gao, Guanmei Liang, Lang Huang, Jing Wang, Xiaoxue Yang, Yi‐Wu Shi, Ursula C. Dräger, Ming Zhong, Tianming Gao, Xinping Yang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13100-020-0205-0

Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered
Cited by: 14
Author(s): Lucas W. Hemmer, Guilherme Borges Dias, Brittny R. Smith, Kelley Van Vaerenberghe, Ashley Howard, Casey M. Bergman, Justin P. Blumenstiel
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2021.716760

Changes in the Gut Microbiome Contribute to the Development of Behcet’s Disease via Adjuvant Effects
Cited by: 8
Author(s): Qingfeng Wang, Shenglan Yi, Guannan Su, Ziyu Du, Pan S, Xinyue Huang, Qingfeng Cao, Guangjie Yuan, Aize Kijlstra, Peizeng Yang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-88948-4

Genetic network and gene set enrichment analyses identify MND1 as potential diagnostic and therapeutic target gene for lung adenocarcinoma
Cited by: 4
Author(s): Jinying Wei, Guangping Meng, Jing Wu, Qiang Zhang, Jie Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s13100-019-0186-z

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
Cited by: 13
Author(s): Pavel Jedlička, Matej Lexa, I. Vanat, Roman Hobza, Eduard Kejnovský
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-5041-y

Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)
Cited by: 30
Author(s): Chongjing Xia, Meinan Wang, Chuntao Yin, Omar E. Cornejo, Scot H. Hulbert, X. M. Chen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13578-021-00546-z

Alterations of RNA splicing patterns in esophagus squamous cell carcinoma
Cited by: 10
Author(s): Jiyu Ding, Chunquan Li, Yin-Wei Cheng, Zhifeng Du, Qiuyu Wang, Zhidong Tang, Chao Song, Qiaoxi Xia, Wenjing Bai, Gang Li, Wei Liu, Li‐Yan Xu, En‐Min Li, Bingli Wu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-4198-0

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers
Cited by: 67
Author(s): Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin Ward‐Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Mélanie Waldenberger
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0158768

Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning
Cited by: 8
Author(s): Chunlei Yang, Lan Mi, Xianqiao Hu, Jianxin Liu, Jiakun Wang
Software Mentions: 3
Published: about 10 years ago

10.1167/iovs.61.2.41

Evidence That Emmetropization Buffers Against Both Genetic and Environmental Risk Factors for Myopia
Cited by: 6
Author(s): Alfred Pozarickij, Clair Enthoven, Neema Ghorbani Mojarrad, Denis Plotnikov, Milly S. Tedja, Annechien E. G. Haarman, J. Willem L. Tideman, Jan Roelof Polling, Kate Northstone, Cathy Williams, Caroline C W Klaver, Jeremy A. Guggenheim
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-87479-2

Soil CO2 emission and soil attributes associated with the microbiota of a sugarcane area in southern Brazil
Cited by: 3
Author(s): Mara Regina Moitinho, Daniel De Bortoli Teixeira, Elton da Silva Bicalho, Alan Rodrigo Panosso, Antônio Sérgio Ferraudo, Gener Tadeu Pereira, Siu Mui Tsai, Beatriz Maria Ferrari Borges, Newton La Scala
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/1937387

Protein Level and Infantile Diarrhea in a Postweaning Piglet Model
Cited by: 10
Author(s): Jing Gao, Jie Yin, Kang Xu, Hui Han, Zemin Liu, Chenyu Wang, Tiejun Li, Yulong Yin
Software Mentions: 3
Published: about 6 years ago

10.1186/s12964-019-0332-8

Low levels of pyruvate induced by a positive feedback loop protects cholangiocarcinoma cells from apoptosis
Cited by: 12
Author(s): Mingming Zhang, Yida Pan, Dehua Tang, Robert Dorfman, Lei Xu, Qian Zhou, Lixing Zhou, Yuming Wang, Li Yang, Yuyao Yin, Bo Kong, Helmut Frieß, Shimin Zhao, Jian‐Lin Wu, Lei Wang, Xiaoping Zou
Software Mentions: 3
Published: over 7 years ago

10.3389/fcell.2021.663032

Phenotypically Anchored mRNA and miRNA Expression Profiling in Zebrafish Reveals Flame Retardant Chemical Toxicity Networks
Cited by: 6
Author(s): Subham Dasgupta, Cheryl L. Dunham, Lisa Truong, Michael T. Simonich, Christopher Sullivan, Robyn L Tanguay
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0207563

The spermidine acetyltransferase SpeG regulates transcription of the small RNA rprA
Cited by: 4
Author(s): Linda I. Hu, E.V. Filippova, Joseph Dang, S. Pshenychnyi, Jiapeng Ruan, O. Kiryukhina, W.F. Anderson, Misty L. Kuhn, Alan J. Wolfe
Software Mentions: 3
Published: over 7 years ago

10.1177/20416695211038265

The Impact of Face Masks on the Emotional Reading Abilities of Children—A Lesson From a Joint School–University Project
Cited by: 30
Author(s): Claus-Christian Carbon, Martin M. Serrano
Software Mentions: 3
Published: about 5 years ago

10.1038/micronano.2017.18

Measurement of copy number variation in single cancer cells using rapid-emulsification digital droplet MDA
Cited by: 13
Author(s): Samuel Kim, Gayatri Premasekharan, Iain C. Clark, Hawi B. Gemeda, Pamela L. Paris, Adam R. Abate
Software Mentions: 3
Published: about 9 years ago

10.1186/s12964-019-0336-4

Autocrine motility factor promotes endometrial cancer progression by targeting GPER-1
Cited by: 22
Author(s): Yiran Li, Yuanhui Jia, Yiding Bian, Huan Tong, Junjie Qu, Kai Wang, Xiaoping Wan
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0246133

Morphosyntactic but not lexical corpus-based probabilities can substitute for cloze probabilities in reading experiments
Cited by: 3
Author(s): Anastasiya Lopukhina, Konstantin Lopukhin, Anna Laurinavichyute
Software Mentions: 3
Published: over 5 years ago

10.1177/2041669519874817

The Pupillary Response to the Unknown: Novelty Versus Familiarity
Cited by: 7
Author(s): Steve Beukema, Ben Jennings, Jay A. Olson, Frederick A. A. Kingdom
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.00778

Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-87127-9

Prevalence of small for gestational age infants in 21 cities in China, 2014–2019
Cited by: 12
Author(s): He Hui, Huazhang Miao, Liang Zhou, Ye Zhang, Wei Jiang, Zhi Deng, Tang Jing, Guocheng Liu, Xiaodong Luo
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8050642

Temporal Dynamics of Bacterial Communities in a Pilot-Scale Vermireactor Fed with Distilled Grape Marc
Cited by: 14
Author(s): María Gómez-Brandòn, Manuel Aira, Natielo Almeida Santana, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 3
Published: over 6 years ago

10.1038/s41419-019-1892-7

Epigenetic re-wiring of breast cancer by pharmacological targeting of C-terminal binding protein
Cited by: 7
Author(s): Jung S. Byun, Samson Park, Dae Ik Yi, Jee-Hye Shin, Sara Gil Hernandez, Stephen M. Hewitt, Marc C. Nicklaus, Megan L. Peach, Laura Guasch, Binwu Tang, Lalage M. Wakefield, Tingfen Yan, Ambar Caban, Alana Jones, Mohamed Kabbout, Nasreen A. Vohra, Anna María Nápoles, Sandeep K. Singhal, Ryan Yancey, Adriana De Siervi, Kevin Gardner
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41419-020-02963-3

EZH2 reduction is an essential mechanoresponse for the maintenance of super-enhancer polarization against compressive stress in human periodontal ligament stem cells
Cited by: 9
Author(s): Qian Li, Xiwen Sun, Yunyi Tang, Yanan Qu, Yanheng Zhou, Yu Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-86626-z

Molecular diversity of Mycobacterium tuberculosis complex in Sikkim, India and prediction of dominant spoligotypes using artificial intelligence
Cited by: 11
Author(s): Kangjam Rekha Devi, Jagat Pradhan, Rinchenla Bhutia, Peggy Dadul, Achyut Sarkar, Nitumoni Gohain, Kanwar Narain
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8111677

The Microbial Composition in Circumneutral Thermal Springs from Chignahuapan, Puebla, Mexico Reveals the Presence of Particular Sulfur-Oxidizing Bacterial and Viral Communities
Cited by: 9
Author(s): Hugo G Castelán-Sánchez, Pablo M Meza-Rodríguez, Erika Carrillo, David I Ríos-Vázquez, Arturo Liñan-Torres, Ramón Alberto Batista-García, Ernesto Pérez‐Rueda, Norma Elena Rojas-Ruíz, Sonia Dávila-Ramos
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0242550

Are papers addressing certain diseases perceived where these diseases are prevalent? The proposal to use Twitter data as social-spatial sensors
Cited by: 7
Author(s): Lutz Bornmann, Robin Haunschild, Vishal Patel
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0194855

Activation of human macrophages by human corneal allogen in vitro
Cited by: 4
Author(s): Paola Kammrath Betancor, Antonia Hildebrand, Daniel Böhringer, Florian Emmerich, Günther Schlunck, Thomas Reinhard, Thabo Lapp
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2019.00752

Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress–Responsive Pathways in Microalga Dunaliella
Cited by: 39
Author(s): Bahman Panahi, Mohammad Frahadian, Jacob T. Dums, Mohammad Amin Hejazi
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.619056

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-015-0200-y

Emergent material properties of developing epithelial tissues
Cited by: 31
Author(s): Pedro F. Machado, Julia Duque, Jocelyn Étienne, Alfonso Martínez-Arias, Guy B. Blanchard, Nicole Gorfinkiel
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-018-4845-0

Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton
Cited by: 7
Author(s): Yujuan Zhang, Chengxu Zhu, Yiran Ding, Yan Zeng, Gong‐Hua Li, Ling Yang, Jianfan Wen, Bin Chen
Software Mentions: 3
Published: about 8 years ago

10.3390/microorganisms9050985

Functional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in Madagascar
Cited by: 3
Author(s): Vincent Hervé, Anaële Simon, Finaritra Randevoson, Guillaume Cailleau, Gabrielle Rajoelison, Herintsitohaina Razakamanarivo, Saskia Bindschedler, Eric Verrecchia, Pilar Junier
Software Mentions: 3
Published: over 5 years ago

10.2196/19416

A Human-Algorithm Integration System for Hip Fracture Detection on Plain Radiography: System Development and Validation Study
Cited by: 10
Author(s): Chi‐Tung Cheng, Chih-Chi Chen, Fu-Jen Cheng, Huan‐Wu Chen, Yi-Siang Su, Chun‐Nan Yeh, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86247-6

Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis
Cited by: 18
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiß, Corinna Bang, André Franke, Maik Pietzner, Ali Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank Ulrich Weiß, Georg Homuth, Markus M. Lerch
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86116-2

Multi-decadal trends in contingent mixing of Atlantic mackerel (Scomber scombrus) in the Northwest Atlantic from otolith stable isotopes
Cited by: 5
Author(s): Kohma Arai, Martin Castonguay, David H. Secor
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-020-02766-6

Deficiency of microRNA-628-5p promotes the progression of gastric cancer by upregulating PIN1
Cited by: 8
Author(s): Yang Chen, Yaran Wu, Shichong Yu, Hyejin Yang, Xiya Wang, Yali Zhang, Shunqin Zhu, Meng-Meng Jie, Cheng Liu, Xinzhe Li, You Zhou, Shi–Ming Yang, Yanwen Yang
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-85516-8

First description of deep benthic habitats and communities of oceanic islands and seamounts of the Nazca Desventuradas Marine Park, Chile
Cited by: 10
Author(s): Jan M. Tapia-Guerra, Ariadna Mechó, Erin E. Easton, María de los Ángeles Gallardo, Matthias Gorny, Javier Sellanes
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-5803-1

Expression dynamics of repetitive DNA in early human embryonic development
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Author(s): Cihangir Yandım, Gökhan Karakülah
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.740167

Ancient Mitochondrial Genomes Reveal Extensive Genetic Influence of the Steppe Pastoralists in Western Xinjiang
Cited by: 6
Author(s): Chao Ning, Hou-Feng Zheng, Fan Zhang, Sihao Wu, Chunxiang Li, Yunlong Zhao, Yang Xu, Dong Wei, Yong Wu, Shizhu Gao, Jin Li, Yinqiu Cui
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-85455-4

Aging selectively dampens oscillation of lipid abundance in white and brown adipose tissue
Cited by: 12
Author(s): Ntsiki M. Held, M. Renate Buijink, Hyung L. Elfrink, Sander Kooijman, Georges E. Janssens, Angela C. M. Luyf, Mia L. Pras‐Raves, Frédéric M. Vaz, Stephan Michel, Riekelt H. Houtkooper, Michel van Weeghel
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-021-03955-7

LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Cited by: 22
Author(s): Renbo Guo, Benkui Zou, Yiran Liang, Jiasheng Bian, Jian Xu, Qian Zhou, Chao Zhang, Tao Chen, Mei Yang, Huansheng Wang, Fajun Pei, Zhonghua Xu
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-84928-w

Gut microbiota markers associated with obesity and overweight in Italian adults
Cited by: 132
Author(s): Vanessa Palmas, Silvia Pisanu, Veronica Madau, Emanuela Casula, Andrea Deledda, Roberto Cusano, Paolo Uva, Sarah Vascellari, Andrea Loviselli, Aldo Manzin, Fernanda Velluzzi
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2019.01215

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0218306

Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structure
Cited by: 22
Author(s): Hugh G. Gauch, Sheng Qian, Hans‐Peter Piepho, Linda Zhou, Rui Chen
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0197766

Analyses of phenotypic differentiations among South Georgian Diving Petrel (Pelecanoides georgicus) populations reveal an undescribed and highly endangered species from New Zealand
Cited by: 22
Author(s): Johannes H. Fischer, Igor Debski, Colin M. Miskelly, Charles A. Bost, Aymeric Fromant, Alan J. D. Tennyson, Jake Tessler, R Cole, Johanna H. Hiscock, Graeme A. Taylor, Heiko Wittmer
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2020.00265

Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer
Cited by: 12
Author(s): Yan Wang, Steven Chen, Xi Rao, Yunlong Liu
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2018.00371

De novo Assembly and Transcriptome Characterization of Opisthopappus (Asteraceae) for Population Differentiation and Adaption
Cited by: 8
Author(s): Maofeng Chai, Shengnan Wang, Jie He, Wei Chen, Zelu Fan, Jia Li, Yiling Wang
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2020.00411

Identification and Validation of Potential Biomarkers and Their Functions in Acute Kidney Injury
Cited by: 19
Author(s): Jianwen Chen, Yalei Chen, Alberto Olivero, Xiangmei Chen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0174514

Oxygen tension regulates the miRNA profile and bioactivity of exosomes released from extravillous trophoblast cells – Liquid biopsies for monitoring complications of pregnancy
Cited by: 89
Author(s): Grace Truong, Dominic Guanzon, Vyjayanthi Kinhal, Omar Elfeky, Andrew Lai, Sherri Longo, Zarin Nuzhat, Carlos Palma, Katherin Scholz-Romero, Ramkumar Menon, Ben Willem J. Mol, Gregory E. Rice, Carlos Salomón
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-021-83935-1

No time to rest: seasonal dynamics of non-structural carbohydrates in twigs of three Mediterranean tree species suggest year-round activity
Cited by: 16
Author(s): Anna Davidson, Sylvia T Le, Katelyn B. Cooper, Eden Lange, Maciej A. Zwieniecki
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-021-04143-3

Pyroptosis inhibition improves the symptom of acute myocardial infarction
Cited by: 26
Author(s): Wenju Liu, Junwei Shen, Yanfei Li, Jiawen Wu, Xiaofeng Luo, Yuanyuan Yu, Yuhan Zhang, Liang Gu, Xiaobai Zhang, Cizhong Jiang, Jue Li
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.638555

Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome
Cited by: 9
Author(s): Huan Liu, Su-Xian Long, Shannon R. M. Pinson, Zhong Tang, Mary Lou Guerinot, David E. Salt, Fang‐Jie Zhao, Xin‐Yuan Huang
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9030647

Dynamics of Gut Microbiota Recovery after Antibiotic Exposure in Young and Old Mice (A Pilot Study)
Cited by: 12
Author(s): Daniel Laubitz, Katri V. Typpo, Monica T. Midura-Kiela, Clairessa M. Brown, Albert Barberán, Fayez K. Ghishan, Pawel R. Kiela
Software Mentions: 3
Published: over 5 years ago

10.1002/pld3.276

Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content
Cited by: 12
Author(s): Virginie Perlo, Frederik C. Botha, Agnelo Furtado, Katrina Hodgson‐Kratky, Robert J. Henry
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2018.00083

Adjusting for Batch Effects in DNA Methylation Microarray Data, a Lesson Learned
Cited by: 57
Author(s): Emily Price, Wendy P. Robinson
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-019-5923-7

Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization
Cited by: 15
Author(s): Rong Ma, Juliana Rangel, Christina M. Grozinger
Software Mentions: 3
Published: about 7 years ago

10.1186/s12915-021-01004-5

Transcription initiation of distant core promoters in a large-sized genome of an insect
Cited by: 2
Author(s): Qing Liu, Feng Jiang, Jie Zhang, Li Xiao, Le Kang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-020-2736-1

Aberrantly expressed HORMAD1 disrupts nuclear localization of MCM8–MCM9 complex and compromises DNA mismatch repair in cancer cells
Cited by: 27
Author(s): Kang Liu, Yifan Wang, Quanfeng Zhu, Peng Li, Jiyuan Chen, Zhenghui Tang, Yuanming Shen, Xiaodong Cheng, Lin-Yu Lu, Yidan Liu
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

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