cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fpls.2017.02022

Rhizosphere Microbiome Recruited from a Suppressive Compost Improves Plant Fitness and Increases Protection against Vascular Wilt Pathogens of Tomato
Cited by: 72
Author(s): Anastasis Antoniou, Maria-Dimitra Tsolakidou, Ioannis A. Stringlis, Iakovos S. Pantelides
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-45588-z

Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway
Cited by: 38
Author(s): Tzu Wei Yang, Wei Hsiang Lee, Siang Jyun Tu, Wei Huang, Huimei Chen, Ting Sun, Max Tsai, Chi‐Chih Wang, Hsuan‐Yi Chen, Chun‐Chia Huang, Bei Hao Shiu, Hsin Tzu Huang, Yu Pao Chou, Chih Hung Chou, Ya Huang, Yi Sun, Chao Liang, Feng Lin, Shinn-Ying Ho, Wen Liang Chen, Shun Fa Yang, Kwo Chang Ueng, Hsien Da Huang, Cheng‐Yi Huang, Yuh Jyh Jong, Chun Lin
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.6775

Distribution of crabs along a habitat gradient on the Yellow Sea coast after Spartina alterniflora invasion
Cited by: 3
Author(s): Pan Chen, Yan Zhang, Xingyu Zhu, Changhu Lu
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-50962-y

The explant developmental stage profoundly impacts small RNA-mediated regulation at the dedifferentiation step of maize somatic embryogenesis
Cited by: 21
Author(s): Vasti Thamara Juárez-González, Brenda Anabel López-Ruíz, Patricia Baldrich, Eduardo Luján-Soto, Blake C. Meyers, Tzvetanka D. Dinkova
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2019.01102

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
Cited by: 93
Author(s): Grace E. Brewer, James J. Clarkson, Olivier Maurin, Alexandre R. Zuntini, Vanessa Barber, Sidonie Bellot, Nicola Biggs, Robyn S. Cowan, Nina M. Davies, Steven Dodsworth, Sara L. Edwards, Wolf L. Eiserhardt, Niroshini Epitawalage, Sue Frisby, Aurélie Grall, Paul J. Kersey, Lisa Pokorny, Ilia J. Leitch, Félix Forest, William J. Baker
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-50227-8

Proinflammatory profile of neonatal monocytes induced by microbial ligands is downmodulated by histamine
Cited by: 4
Author(s): Anna Cláudia Calvielli Castelo Branco, Newton Lindolfo Pereira, Fábio Seiti Yamada Yoshikawa, Luanda Mara da Silva Oliveira, Franciane Mouradian Emidio Teixeira, Lucas Ferrari de Oliveira, Anna Julia Pietrobon, Marina Passos Torrealba, Jozely Francisca Mello Lima, Alberto José da Silva Duarte, Maria Notomi Sato
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-50054-x

Association between the relative abundance of gastric microbiota and the risk of gastric cancer: a case-control study
Cited by: 67
Author(s): Madhawa Gunathilake, Jeonghee Lee, Il Ju Choi, Young Il Kim, Yongju Ahn, Chanhyeok Park, Jeongseon Kim
Software Mentions: 3
Published: almost 7 years ago

10.1038/s42003-020-1073-3

Task rule and choice are reflected by layer-specific processing in rodent auditory cortical microcircuits
Cited by: 14
Author(s): Marina M. Zempeltzi, Martin Kisse, Michael G. K. Brunk, Claudia Glemser, Sümeyra Aksit, Katrina E. Deane, Sandip Maurya, Lina Schneider, Frank W. Ohl, Matthias Deliano, Max F. K. Happel
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-49462-w

Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities
Cited by: 200
Author(s): Qiang Zeng, Dongfang Li, Yuan He, Yinhu Li, Zhenyu Yang, Xiaolan Zhao, Yanhong Liu, Yu Wang, Jing Sun, Xin Feng, Fei Wang, Jiaxing Chen, Yuejie Zheng, Yonghong Yang, Xiaogang Sun, Ximing Xu, Daxi Wang, Toby Kenney, Yiqi Jiang, Hong Gu, Yongli Li, Ke Zhou, Shuai Cheng Li, Wenkui Dai
Software Mentions: 3
Published: almost 7 years ago

10.3389/fimmu.2020.01218

Pan-Cancer Analysis of Immune Cell Infiltration Identifies a Prognostic Immune-Cell Characteristic Score (ICCS) in Lung Adenocarcinoma
Cited by: 102
Author(s): Shuguang Zuo, Min Wei, Shiqun Wang, Jie Dong, Jiwu Wei
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13018-020-01965-3

Identification of potential specific biomarkers and key signaling pathways between osteogenic and adipogenic differentiation of hBMSCs for osteoporosis therapy
Cited by: 9
Author(s): Jianjun Wu, Peian Cai, Zhenhui Lu, Zhang Zhi, Xixi He, Bikang Zhu, Li Zheng, Jinmin Zhao
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8287

Use of environmental DNA (eDNA) in streams to detect feral swine (Sus scrofa)
Cited by: 4
Author(s): Amberly Hauger, Karmen M. Hollis-Etter, Dwayne R. Etter, Gary J. Roloff, Andrew R. Mahon
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-49421-5

Staphylococcal enterotoxins modulate the effector CD4+ T cell response by reshaping the gene expression profile in adults with atopic dermatitis
Cited by: 11
Author(s): Raquel Leão Orfali, Fábio Seiti Yamada Yoshikawa, Luanda Mara da Silva Oliveira, Newton Lindolfo Pereira, Jozely Francisca Mello Lima, Yasmim Álefe Leuzzi Ramos, Alberto José da Silva Duarte, Maria Notomi Sato, Valéria Aoki
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-48007-5

Insights into Pasteurellaceae carriage dynamics in the nasal passages of healthy beef calves
Cited by: 16
Author(s): Amy Thomas, Michael Bailey, Michael R. F. Lee, Andrew Mead, Begonia Morales-Aza, Rosy Reynolds, Barry Vipond, Adam Finn, M. Eisler
Software Mentions: 3
Published: almost 7 years ago

10.3389/fimmu.2020.598636

Early Cytokine Induction Upon Pseudomonas aeruginosa Infection in Murine Precision Cut Lung Slices Depends on Sensing of Bacterial Viability
Cited by: 11
Author(s): Ulrike Kolbe, Buqing Yi, Tanja Poth, Amy E. Saunders, Sébastien Boutin, Alexander H. Dalpke
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-49464-8

Impact of cleaning and disinfection procedures on microbial ecology and Salmonella antimicrobial resistance in a pig slaughterhouse
Cited by: 20
Author(s): Arnaud Bridier, Patricia Le Grandois, Marie-Hélène Moreau, Charleyne Prénom, Alain Roux, Carole Feurer, Christophe Soumet
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.7441

Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA–mRNA–miRNA ceRNA network analysis
Cited by: 16
Author(s): Weiwei Liang, Fangfang Sun
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12870-021-02893-y

Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium
Cited by: 32
Author(s): Jiajia Zuo, Mengting Zu, Lei Liu, Xiaomei Song, Yingdan Yuan
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-48771-4

Pheno-seq – linking visual features and gene expression in 3D cell culture systems
Cited by: 17
Author(s): Stephan M. Tirier, Jeongbin Park, Friedrich Preußer, Lisa Amrhein, Zuguang Gu, Simon Steiger, Jan‐Philipp Mallm, Teresa G Krieger, Marcel Waschow, Björn Eismann, Marta Gut, Karsten Rippe, Matthias Schlesner, Fabian J. Theis, Christiane Fuchs, Claudia R. Ball, Hanno Glimm, Roland Eils, Christian Conrad
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-48841-7

Small Animal Video Tracking for Activity and Path Analysis Using a Novel Open-Source Multi-Platform Application (AnimApp)
Cited by: 18
Author(s): S. Madhusudana Rao, Sam W. Z. Olechnowicz, Patrick Krätschmer, James E.C. Jepson, Claire M. Edwards, James Edwards
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-48611-5

Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids
Cited by: 40
Author(s): Yuxiang Bai, Ge Wang, Ya-Dong Cheng, Puyou Shi, Chengcui Yang, Heng Yang, Zhaoli Xu
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2020.590111

Ethanol-Enriched Substrate Facilitates Ambrosia Beetle Fungi, but Inhibits Their Pathogens and Fungal Symbionts of Bark Beetles
Cited by: 11
Author(s): Maximilian Lehenberger, Markus Benkert, Peter H. W. Biedermann
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2021.687151

Integrative Transcriptomic Analysis Reveals the Immune Mechanism for a CyHV-3-Resistant Common Carp Strain
Cited by: 11
Author(s): Zhiying Jia, Nan Wu, Xiaona Jiang, Heng Li, Jing Sun, Minjun Shi, Chitao Li, Yuejing Ge, Xuesong Hu, Weidong Ye, Ying Tang, Junwei Shan, Yingyin Cheng, Xiao-Qin Xia, Shi Liu
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.61073

Plasma proteomic biomarker signature of age predicts health and life span
Cited by: 63
Author(s): Toshiko Tanaka, Nathan Basisty, Giovanna Fantoni, Julián Candia, Ann Zenobia Moore, Angélique Biancotto, Birgit Schilling, Stefania Bandinelli, Luigi Ferrucci
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.65902

Mechanistic theory predicts the effects of temperature and humidity on inactivation of SARS-CoV-2 and other enveloped viruses
Cited by: 134
Author(s): Dylan H. Morris, Claude Kwe Yinda, Amandine Gamble, Fernando W. Rossine, Qishen Huang, Trenton Bushmaker, Robert J. Fischer, M. Jeremiah Matson, Neeltje van Doremalen, Peter J. Vikesland, Linsey C. Marr, Vincent J. Munster, James O. Lloyd‐Smith
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00221-020-06008-1

Conscious awareness modulates processing speed in the redundant signal effect
Cited by: 2
Author(s): Anna Matilda Helena Cederblad, Aleksandar Visokomogilski, Søren K. Andersen, Mary Joan MacLeod, Arash Sahraie
Software Mentions: 3
Published: about 5 years ago

10.1099/mgen.0.000403

Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia
Cited by: 7
Author(s): Chandler C. Roe, Marc Stegger, Berit Lilje, Thor Bech Johannesen, Kim Lee Ng, Raphael N. Sieber, Elizabeth M. Driebe, David M. Engelthaler, Paal Skytt Andersen
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms19113354

Transcriptome Profiles Reveal the Crucial Roles of Auxin and Cytokinin in the “Shoot Branching” of Cremastra appendiculata
Cited by: 13
Author(s): Xiang Lv, Mingsheng Zhang, Xiaolan Li, Ye RuiHua, Xiaohong Wang
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2021.655673

Exploring Biocontrol Agents From Microbial Keystone Taxa Associated to Suppressive Soil: A New Attempt for a Biocontrol Strategy
Cited by: 34
Author(s): Yanfen Zheng, Xiaobin Han, Dong‐Lin Zhao, Keke Wei, Yuan Yuan, Yiqiang Li, Minghong Liu, Chengsheng Zhang
Software Mentions: 3
Published: over 5 years ago

10.1002/ctm2.97

A metagenomic study of biliary microbiome change along the cholecystitis‐carcinoma sequence
Cited by: 11
Author(s): Xiaoling Song, Xuan Wang, Yunping Hu, Huaifeng Li, Tianhui Ren, Yongsheng Li, Liguo Liu, Lin Li, Xuechuan Li, Ziyi Wang, Wen Huang, Runfa Bao, Yijian Zhang, Maolan Li, Xuefeng Wang, Feng Liu, Jun Gu, Linhui Zheng, Weiping Wu, Yingbin Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2019.01396

Desiccation-Driven Senescence in the Resurrection Plant Xerophyta schlechteri (Baker) N.L. Menezes: Comparison of Anatomical, Ultrastructural, and Metabolic Responses Between Senescent and Non-Senescent Tissues
Cited by: 19
Author(s): Astrid Lillie Radermacher, S. Francois du Toit, Jill M. Farrant
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2017.00053

Dissecting the Biochemical and Transcriptomic Effects of a Locally Applied Heat Treatment on Developing Cabernet Sauvignon Grape Berries
Cited by: 83
Author(s): Fatma Lecourieux, Christian Kappel, Philippe Pieri, Justine Charon, Jérémy Pillet, Ghislaine Hilbert, Christel Renaud, Éric Gomès, Serge Delrot, David Lecourieux
Software Mentions: 3
Published: over 9 years ago

10.1111/eva.12762

Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials
Cited by: 15
Author(s): Abigail Colclough, Jukka Corander, Samuel K. Sheppard, Sion C. Bayliss, Michiel Vos
Software Mentions: 3
Published: over 7 years ago

10.1016/j.exger.2018.10.003

Identification of key pathways and metabolic fingerprints of longevity in C. elegans
Cited by: 45
Author(s): Arwen W. Gao, Reuben L. Smith, Michel van Weeghel, Rashmi Kamble, Georges E. Janssens, Riekelt H. Houtkooper
Software Mentions: 3
Published: over 7 years ago

10.1099/mgen.0.000096

Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing
Cited by: 26
Author(s): Sharif Shaaban, Lauren A. Cowley, Sean P. McAteer, Claire Jenkins, Timothy J. Dallman, James L. Bono, David L. Gally
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2021.667394

Pulse Frequency in Crop Rotations Alters Soil Microbial Community Networks and the Relative Abundance of Fungal Plant Pathogens
Cited by: 5
Author(s): Tony Yang, Bianca Evans, Luke D. Bainard
Software Mentions: 3
Published: about 5 years ago

10.1099/mgen.0.000133

Phylogeographic separation and formation of sexually discrete lineages in a global population of Yersinia pseudotuberculosis
Cited by: 11
Author(s): Tristan Seecharran, Laura Kalin-Mänttäri, Katja A. Koskela, Simo Nikkari, Benjamin Dickins, Jukka Corander, Mikael Skurnik, Alan McNally
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2016.01781

The Microbiome and Occurrence of Methanotrophy in Carnivorous Sponges
Cited by: 18
Author(s): Jon Thomassen Hestetun, Helge K. Dahle, Steffen Leth Jørgensen, Bernt Rydland Olsen, Hans Tore Rapp
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2020.614618

Predominance of Metabolic Resistance in a Six-Way-Resistant Palmer Amaranth (Amaranthus palmeri) Population
Cited by: 23
Author(s): Chandrima Shyam, Ednaldo Alexandre Borgato, Dallas E. Peterson, J. Anita Dille, Mithila Jugulam
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2020.00383

Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease
Cited by: 48
Author(s): Zhangran Chen, Yurou Xie, Fei Zhou, Bangzhou Zhang, Jingtong Wu, Luxi Yang, Shuaimei Xu, Robert D. Stedtfeld, Qiongyun Chen, Jingjing Liu, Xiang Zhang, Hui Xu, Jianlin Ren
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2020.561413

Chilling and Forcing From Cut Twigs—How to Simplify Phenological Experiments for Citizen Science
Cited by: 11
Author(s): Annette Menzel, Ye Yuan, Andreas Hamann, Ulrike Ohl, Michael Matiu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.01178

It Is Hot in the Sun: Antarctic Mosses Have High Temperature Optima for Photosynthesis Despite Cold Climate
Cited by: 37
Author(s): Alicia Perera-Castro, Melinda J. Waterman, Johanna D. Turnbull, Michael B. Ashcroft, Ella McKinley, Jennifer R. Watling, Jessica Bramley-Alves, Angélica Casanova-Katny, Gustavo E. Zúñiga, Jaume Flexas, Sharon A. Robinson
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.47293

tec-1 kinase negatively regulates regenerative neurogenesis in planarians
Cited by: 9
Author(s): Alexander Karge, Nicolle A. Bonar, Scott T. Wood, Christian P. Petersen
Software Mentions: 3
Published: over 6 years ago

10.1099/mgen.0.000222

A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis
Cited by: 6
Author(s): Kristian Alfsnes, Stephan A. Frye, Jens Eriksson, Vegard Eldholm, Ola Brønstad Brynildsrud, Jon Bohlin, Odile B. Harrison, Derek W. Hood, Martin C. J. Maiden, Tone Tønjum, Ole Herman Ambur
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2021.668623

The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns
Cited by: 16
Author(s): Alexandre Hild Aono, Ricardo José Gonzaga Pimenta, Ana Letycia Basso Garcia, Fernando Henrique Correr, Guilherme Kenichi Hosaka, Marishani Marin Carrasco, Cláudio Benício Cardoso-Silva, Melina Cristina Mancini, Danilo Augusto Sforça, Lucas Borges dos Santos, James Shiniti Nagai, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Monalisa Sampaio Carneiro, Thiago Willian Almeida Balsalobre, Marcos G. Quiles, Welison Andrade Pereira, Gabriel Rodrigues Alves Margarido, Anete Pereira de Souza
Software Mentions: 3
Published: almost 5 years ago

10.1099/mgen.0.000352

Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones
Cited by: 30
Author(s): Catherine Ludden, Arun Gonzales Decano, Dorota Jamrozy, Derek Pickard, Dearbháile Morris, Julian Parkhill, Sharon J. Peacock, Martin Cormican, Tim Downing
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: over 8 years ago

10.1002/mbo3.694

Selective chemoattraction of the benthic diatom Seminavis robusta to phosphate but not to inorganic nitrogen sources contributes to biofilm structuring
Cited by: 11
Author(s): Karen Grace V. Bondoc, Christine Lembke, Wim Vyverman, Georg Pohnert
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13104-018-3864-x

Transcriptomic evidence for distinct mechanisms underlying abscission deficiency in the Arabidopsis mutants haesa/haesa-like 2 and nevershed
Cited by: 6
Author(s): Isaiah Taylor, John C. Walker
Software Mentions: 3
Published: over 7 years ago

10.1002/mbo3.494

wblE2 transcription factor in Streptomyces griseus S4‐7 plays an important role in plant protection
Cited by: 7
Author(s): Hyun Ji Cho, Young Chul Kwon, Da-Ran Kim, Gyeongjun Cho, Seong Won Hong, Dong-Won Bae, Youn‐Sig Kwak
Software Mentions: 3
Published: about 9 years ago

10.7554/eLife.54993

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency
Cited by: 30
Author(s): Joana G. Marques, Berkley E. Gryder, Blaz Pavlovic, Yeonjoo Chung, Quy A. Ngo, Fabian Frommelt, Matthias Gstaiger, Young K. Song, Katharina Benischke, Dominik Laubscher, Marco Wachtel, Javed Khan, Beat W. Schäfer
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.65427

Ciliary neuropeptidergic signaling dynamically regulates excitatory synapses in postnatal neocortical pyramidal neurons
Cited by: 15
Author(s): Lauren Tereshko, Ya Gao, Brian A Cary, Gina G. Turrigiano, Piali Sengupta
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0237717

The effect of task-irrelevant spatial contexts on 360-degree attention
Cited by: 2
Author(s): Yuki Harada, Junji Ohyama
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.58435

Light-induced engagement of microglia to focally remodel synapses in the adult brain
Cited by: 20
Author(s): Carla Cangalaya, Stoyan Stoyanov, Klaus–Dieter Fischer, Alexander Dityatev
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.46497

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
Cited by: 80
Author(s): Tom O. Delmont, Evan Kiefl, Ozsel Kilinc, Özcan C. Esen, Ismail Uysal, Michael S. Rappé, Steven Giovannoni, A. Murat Eren
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2020.01626

Novel Antimicrobial Cellulose Fleece Inhibits Growth of Human-Derived Biofilm-Forming Staphylococci During the SIRIUS19 Simulated Space Mission
Cited by: 3
Author(s): Daniela Wischer, Dominik Schneider, Anja Poehlein, Friederike Herrmann, Harun Oruc, Junias Meinhardt, Olaf Wagner, Rameez Ahmed, С. А. Харин, Natalia Novikova, Rainer Haag, Rolf Daniel, Elisabeth Grohmann
Software Mentions: 3
Published: almost 6 years ago

10.1128/MRA.00182-20

16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
Cited by: 5
Author(s): Eugênia Naro‐Maciel, Melissa R. Ingala, Irena E. Werner, Allison M. Fitzgerald
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.32341

CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo
Cited by: 60
Author(s): Gabriel Aughey, Alicia Estacio-Gómez, Jamie Thomson, Hang Yin, Tony D. Southall
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.47713

Protein engineering expands the effector recognition profile of a rice NLR immune receptor
Cited by: 97
Author(s): Juan Carlos De la Concepcion, Marina Franceschetti, Dan MacLean, Ryohei Terauchi, Sophien Kamoun, Mark J. Banfield
Software Mentions: 3
Published: almost 7 years ago

10.3389/fpls.2021.712167

Genetic Dissection of Grain Yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel
Cited by: 3
Author(s): Anuj Kumar, Chirag Gupta, Julie Thomas, Andy Pereira
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2021.715377

Homo- and Dikaryons of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Differ in Life History Strategy
Cited by: 14
Author(s): Edward Umberto Serghi, Vasilis Kokkoris, Calvin Cornell, Jeremy R. Dettman, Franck Stefani, Nicolas Corradi
Software Mentions: 3
Published: almost 5 years ago

10.1186/s40168-016-0199-5

The structure and diversity of human, animal and environmental resistomes
Cited by: 310
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2019.01263

Identification and Validation of Candidate Genes Involved in Fatty Acid Content in Oil Palm by Genome-Wide Association Analysis
Cited by: 20
Author(s): Wei Xia, Tingting Luo, Yajing Dou, Wei Zhang, Annaliese S. Mason, Dong Huang, Xiaolong Huang, Wenqi Tang, Jihua Wang, Chunyu Zhang, Yong Xiao
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2021.587640

Fine Mapping of Leaf Trichome Density Revealed a 747-kb Region on Chromosome 1 in Cold-Hardy Hybrid Wine Grape Populations
Cited by: 10
Author(s): Yin Lu, Avinash Karn, Lance Cadle‐Davidson, Cheng Zou, Anna Underhill, Paul Atkins, Erin L. Treiber, Daniel F. Voytas, Matthew D. Clark
Software Mentions: 3
Published: over 5 years ago

10.2196/19416

A Human-Algorithm Integration System for Hip Fracture Detection on Plain Radiography: System Development and Validation Study
Cited by: 10
Author(s): Chi‐Tung Cheng, Chih-Chi Chen, Fu-Jen Cheng, Huan‐Wu Chen, Yi-Siang Su, Chun‐Nan Yeh, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.544476

Down-Regulation of MiR-181c-5p Promotes Epithelial-to-Mesenchymal Transition in Laryngeal Squamous Cell Carcinoma via Targeting SERPINE1
Cited by: 11
Author(s): Xin Li, Ping Wu, Yuhua Fan, Yalan Liu, Xing Fang, Wei Wang, Suping Zhao
Software Mentions: 3
Published: over 5 years ago

10.3390/genes12091374

Identification of Long Non-Coding RNAs Involved in Porcine Fat Deposition Using Two High-Throughput Sequencing Methods
Cited by: 5
Author(s): Yibing Liu, Ying Yu, Ai Hong, Fengxia Zhang, Xitong Zhao, Huatao Liu, Yong Shi, Kai Xing, Chuduan Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2019.01548

Microbiome of the Black-Lipped Pearl Oyster Pinctada margaritifera, a Multi-Tissue Description With Functional Profiling
Cited by: 35
Author(s): Caroline Dubé, Chin‐Long Ky, Serge Planes
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms20020401

Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic Profiles
Cited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: over 7 years ago

10.1177/2041669519874817

The Pupillary Response to the Unknown: Novelty Versus Familiarity
Cited by: 7
Author(s): Steve Beukema, Ben Jennings, Jay A. Olson, Frederick A. A. Kingdom
Software Mentions: 3
Published: almost 7 years ago

10.1177/20416695211038265

The Impact of Face Masks on the Emotional Reading Abilities of Children—A Lesson From a Joint School–University Project
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Author(s): Claus-Christian Carbon, Martin M. Serrano
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0101205

Movement-Based Estimation and Visualization of Space Use in 3D for Wildlife Ecology and Conservation
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Author(s): Jeff A. Tracey, James K. Sheppard, Jun Zhu, Fuwen Wei, Ronald R. Swaisgood, Robert N. Fisher
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0181333

Plant species dispersed by Galapagos tortoises surf the wave of habitat suitability under anthropogenic climate change
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Author(s): Diego Ellis‐Soto, Stephen Blake, Alaa Eldin Soultan, Anne Guézou, Fredy Cabrera, Stefan Lötters
Software Mentions: 3
Published: almost 9 years ago

10.1167/iovs.61.2.41

Evidence That Emmetropization Buffers Against Both Genetic and Environmental Risk Factors for Myopia
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Author(s): Alfred Pozarickij, Clair Enthoven, Neema Ghorbani Mojarrad, Denis Plotnikov, Milly S. Tedja, Annechien E. G. Haarman, J. Willem L. Tideman, Jan Roelof Polling, Kate Northstone, Cathy Williams, Caroline C W Klaver, Jeremy A. Guggenheim
Software Mentions: 3
Published: over 6 years ago

10.1099/ijsem.0.004774

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
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Author(s): Xiaoying Li, Jessica L. Sutter, Jacobo de la Cuesta-Zuluaga, Jillian L. Waters, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 3
Published: about 5 years ago

10.1186/s12014-021-09323-z

Robust optimization of SWATH-MS workflow for human blood serum proteome analysis using a quality by design approach
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Author(s): Edith Serrano-Blesa, Andrew C.G. Porter, Dennis Lendrem, Costantino Pitzalis, Anne Barton, Achim Treumann, John D. Isaacs
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2021.621806

Mining of RNA Methylation-Related Genes and Elucidation of Their Molecular Biology in Gallbladder Carcinoma
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Author(s): Chengliang Yang, Jialei Chen, Zhe Yu, Jing Luo, Xuemei Li, Baoyong Zhou, Ning Jiang
Software Mentions: 3
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10.3389/fmicb.2020.00652

Effects of Carbon/Nitrogen Ratio on Growth, Intestinal Microbiota and Metabolome of Shrimp (Litopenaeus vannamei)
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Author(s): Haipeng Guo, Lei Huang, Songtao Hu, Chen Chen, Xiaolin Huang, Wei Liu, Sipeng Wang, Yueyue Zhu, Yueji Zhao, Demin Zhang
Software Mentions: 3
Published: about 6 years ago

10.1590/1678-4685-GMB-2018-0351

A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines
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Author(s): Gabriela P. Branco, Renan Valieris, Lucas Venezian Povoa, Luíza Ferreira de Araújo, Gustavo Ribeiro Fernandes, Jorge Estefano Santana de Souza, María Galli de Amorim, Elisa Napolitano Ferreira, Israel Tojal da Silva, Diana Noronha Nunes, Emmanuel Dias-Neto
Software Mentions: 3
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10.3390/ijms20020438

Gut Microbiota and Predicted Metabolic Pathways in a Sample of Mexican Women Affected by Obesity and Obesity Plus Metabolic Syndrome
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Author(s): Alejandra Chávez-Carbajal, Khemlal Nirmalkar, Ana Bertha Pérez-Lizaur, Fernando Hernández-Quiroz, Silvia Ramírez-del-Alto, Jaime García‐Mena, César Hernández‐Guerrero
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20020415

Understanding Changes in Tomato Cell Walls in Roots and Fruits: The Contribution of Arbuscular Mycorrhizal Colonization
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Author(s): Matteo Chialva, Jonatan U. Fangel, Mara Novero, Inès Zouari, Alessandra Salvioli di Fossalunga, William G. T. Willats, Paola Bonfante, Raffaella Balestrini
Software Mentions: 3
Published: over 7 years ago

10.1186/s40594-021-00306-y

Am I getting through? Surveying students on what messages they recall from the first day of STEM classes
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Author(s): Clara L. Meaders, Lillian G. Senn, Brian A. Couch, A. Kelly Lane, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, Michelle K. Smith
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2021.719355

Identification of a Prognostic Model Based on 2-Gene Signature and Analysis of Corresponding Tumor Microenvironment in Alcohol-Related Hepatocellular Carcinoma
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Author(s): Yong Guo, Jie‐Jun Hu, Zhibo Zhang, Guo‐Chao Zhong, Jianping Gong, Dong Cai
Software Mentions: 3
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10.1186/s40942-020-00209-0

Topographic analysis of macular choriocapillaris flow deficits in diabetic retinopathy using swept–source optical coherence tomography angiography
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Author(s): Isaac Gendelman, A. Yasin Alibhai, Eric M. Moult, Emily S. Levine, Phillip X. Braun, Nihaal Mehta, Yi Zhao, Akihiro Ishibazawa, Osama Sorour, Caroline R. Baumal, André J. Witkin, Elias Reichel, James G. Fujimoto, Jay S. Duker, Nadia K. Waheed
Software Mentions: 3
Published: over 6 years ago

10.1186/s12711-019-0456-8

Removal of alleles by genome editing (RAGE) against deleterious load
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Author(s): Martin Johnsson, R. Chris Gaynor, Janez Jenko, Gregor Gorjanc, Dirk-Jan de Koning, John M. Hickey
Software Mentions: 3
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10.1016/j.ijpddr.2021.01.001

TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries
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Author(s): Alexander Y.F. Lam, Daniel Vuong, Aaron R. Jex, Andrew M. Piggott, Ernest Lacey, Samantha J. Emery-Corbin
Software Mentions: 3
Published: about 5 years ago

10.1038/s10038-020-0803-1

The clinical-phenotype continuum in DYNC1H1-related disorders—genomic profiling and proposal for a novel classification
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Author(s): Lena‐Luise Becker, Hormos Salimi Dafsari, Jens Schallner, Dalia Abdin, Michael Seifert, Florence Petit, Thomas Smol, Levinus A. Bok, Lance H. Rodan, Ingrid P.C. Krapels, Stephanie Spranger, Bernhard Weschke, Katherine Johnson, Volker Straub, Angela M. Kaindl, Nataliya Di Donato, Maja von der Hagen, Sebahattin Çırak
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12711-021-00608-3

Identification of QTL regions and candidate genes for growth and feed efficiency in broilers
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Author(s): Wei Li, Maiqing Zheng, Guiping Zhao, Jie Wang, Jie Liu, Shunli Wang, Furong Feng, Dawei Liu, Dan Zhu, Qinghe Li, Liping Guo, Yuming Guo, Ranran Liu, Jie Wen
Software Mentions: 3
Published: over 5 years ago

10.1007/s00784-016-2024-8

Efficacy of desensitizing products containing 8% arginine and calcium carbonate for hypersensitivity relief in MIH-affected molars: an 8-week clinical study
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Software Mentions: 3
Published: over 9 years ago

10.1007/s00784-021-03860-5

Gingival phenotype assessment methods and classifications revisited: a preclinical study
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Author(s): Kai R. Fischer, Jasmin Büchel, Tiziano Testori, Giulio Rasperini, Thomas Attin, Patrick R. Schmidlin
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-018-0528-y

Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors
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Author(s): Priscila Bascuñán, Juan Pablo Niño-García, Yadira Galeano-Castañeda, David Serre, Margarita M. Correa
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0155957

Genetic and Environmental Control of Neurodevelopmental Robustness in Drosophila
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Author(s): David J. Mellert, W. Ryan Williamson, Troy R. Shirangi, Gwyneth M Card, James W. Truman
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2018.03331

Fecal Microbiota of Toxigenic Clostridioides difficile-Associated Diarrhea
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Author(s): Marta Hernández, Mónica de Frutos, David Rodrı́guez-Làzaro, Luis López-Urrutia, Narciso M. Quijada, José María Eiros
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.579802

A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length, and Genomic Positions
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Author(s): Belinda Loh, Jiayuan Chen, Prasanth Manohar, Yunsong Yu, Xiaoting Hua, Sebastian Leptihn
Software Mentions: 3
Published: over 5 years ago

10.1186/s12967-019-02168-z

The regulatory effect of microRNA-21a-3p on the promotion of telocyte angiogenesis mediated by PI3K (p110α)/AKT/mTOR in LPS induced mice ARDS
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Author(s): Yile Zhou, Yong Yang, Tao Liang, Yan Hu, Haihong Tang, Dongli Song, Hao Fang
Software Mentions: 3
Published: over 6 years ago

10.1038/s42003-020-01534-8

Temperature modulates stress response in mainstream anammox reactors
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Author(s): Robert Niederdorfer, Damian Hausherr, Alejandro Palomo, Jing Wei, Paul Magyar, Barth F. Smets, Adriano Joss, Helmut Bürgmann
Software Mentions: 3
Published: over 5 years ago

10.1186/gb-2012-13-12-r113

Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data
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Author(s): Matthew Parker, Xiang Chen, Armita Bahrami, James Dalton, Michael Rusch, Gang Wu, John Easton, Nai Kong V. Cheung, Michael A. Dyer, Elaine R. Mardis, Richard K. Wilson, Charles G. Mullighan, Richard J. Gilbertson, Suzanne J. Baker, Gerard P. Zambetti, David W. Ellison, James R. Downing, Jinghui Zhang
Software Mentions: 3
Published: over 14 years ago

10.3389/fmicb.2020.00483

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids
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Author(s): Pierre-Emmanuel Douarre, Ludovic Mallet, Nicolas Radomski, Arnaud Felten, Michel‐Yves Mistou
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-020-02604-z

Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study
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Author(s): Benjamin Karikari, Zili Wang, Yefei Zhou, Wenliang Yan, Jiao Feng, Tuanjie Zhao
Software Mentions: 3
Published: almost 6 years ago

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