cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0232995

76-year decline and recovery of aspen mediated by contrasting fire regimes: Long-unburned, infrequent and frequent mixed-severity wildfire
Cited by: 2
Author(s): Cerena J. Brewen, John‐Pascal Berrill, Martin W. Ritchie, Kevin Boston, Christa M. Dagley, Bobette E. Jones, Michelle Coppoletta, Coye L. Burnett
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0240390

Managing flowering time in Miscanthus and sugarcane to facilitate intra- and intergeneric crosses
Cited by: 9
Author(s): Hongxu Dong, Lindsay V. Clark, Xiaoli Jin, Kossonou Guillaume Anzoua, Л. В. Багмет, Pavel Chebukin, Elena Dzyubenko, N. I. Dzyubenko, Bimal Kumar Ghimire, Kweon Heo, Douglas A. Johnson, Hironori Nagano, Andrey Sabitov, Junhua Peng, Toshihiko Yamada, Ji Hye Yoo, Chang Yeon Yu, Hua Zhao, Stephen P. Long, Erik J. Sacks
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0242685

Exploring the influence of deforestation on dengue fever incidence in the Brazilian Amazonas state
Cited by: 11
Author(s): Alexandra Kalbus, Vanderson de Souza Sampaio, Juliane Boenecke, Ralf Reintjes
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers12092704

Mass Spectrometry Imaging for Reliable and Fast Classification of Non-Small Cell Lung Cancer Subtypes
Cited by: 13
Author(s): Mark Kriegsmann, Christiane Zgorzelski, Rita Casadonte, Kristina Schwamborn, Thomas Muley, Hauke Winter, Martin Eichhorn, Florian Eichhorn, Arne Warth, Sören‐Oliver Deininger, Petros Christopoulos, Michael Thomas, Thomas Longerich, Albrecht Stenzinger, Wilko Weichert, Carsten Müller‐Tidow, Jörg Kriegsmann, Peter Schirmacher, Katharina Kriegsmann
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13123019

NF-Y Subunits Overexpression in HNSCC
Cited by: 7
Author(s): Eugenia Bezzecchi, Andrea Bernardini, Mirko Ronzio, Claudia Miccolo, Susanna Chiocca, Diletta Dolfini, Roberto Mantovani
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers11111685

Intra-Patient Heterogeneity of Circulating Tumor Cells and Circulating Tumor DNA in Blood of Melanoma Patients
Cited by: 21
Author(s): Katharina Gorges, Lisa Wiltfang, Tobias M. Gorges, Alexander Sartori, Lina Hildebrandt, Laura Keller, Beate Volkmer, Sven Peine, Anna Babayan, Ingrid Moll, Stefan W. Schneider, Sören Twarock, Peter Mohr, Jens W. Fischer, Klaus Pantel
Software Mentions: 3
Published: over 6 years ago

10.3390/cancers12092671

Zoledronic Acid Abrogates Restraint Stress-Induced Macrophage Infiltration, PDGF-AA Expression, and Ovarian Cancer Growth
Cited by: 13
Author(s): Claudia B. Colon-Echevarria, Tatiana Ortiz, Lizette Maldonado, Melanie J. Hidalgo-Vargas, Jaileene Pérez‐Morales, Alexandra N. Aquino-Acevedo, Roberto Herrera-Noriega, Margarita Bonilla-Claudio, Eida Castro, Guillermo N. Armaiz-Pena
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13081750

Combined Assessment of Immune Checkpoint Regulator VISTA on Tumor-Associated Immune Cells and Platelet-to-Lymphocyte Ratio Identifies Advanced Germ Cell Tumors with Higher Risk of Unfavorable Outcomes
Cited by: 10
Author(s): Rafał Pęksa, Michał Kunc, Marta Popęda, Michał Piątek, Michał Bieńkowski, Jolanta Żok, Anna Starzyńska, Adrian Perdyan, M Sowa, Renata Duchnowska, Wojciech Biernat
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13040827

Sulforaphane Inhibits the Expression of Long Noncoding RNA H19 and Its Target APOBEC3G and Thereby Pancreatic Cancer Progression
Cited by: 13
Author(s): Yiqiao Luo, Bin Yan, Li Liu, Libo Yin, Huihui Ji, Xuefeng An, Jury Gladkich, Zhimin Qi, Carolina De La Torre, Ingrid Herr
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers12061635

Circulating miRNAs in Small Extracellular Vesicles Secreted by a Human Melanoma Xenograft in Mouse Brains
Cited by: 9
Author(s): Loredana Guglielmi, Marta Nardella, Carla Musa, Ingrid Cifola, Manuela Porru, Beatrice Cardinali, Ilaria Iannetti, Chiara Di Pietro, Giulia Bolasco, Valentina Palmieri, Laura Vilardo, Nicolò Panini, Fabrizio Bonaventura, Massimiliano Papi, Ferdinando Scavizzi, Marcello Raspa, Carlo Leonetti, Germana Falcone, Armando Felsani, Igea D’Agnano
Software Mentions: 3
Published: about 6 years ago

10.3390/cancers13112528

Biomarker Identification through Multiomics Data Analysis of Prostate Cancer Prognostication Using a Deep Learning Model and Similarity Network Fusion
Cited by: 26
Author(s): Tzu Hao Wang, Cheng Yang Lee, Tzong-Yi Lee, Hsien Da Huang, Justin Bo Kai Hsu, Tzu Hao Chang
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13020189

The Caspase-1/IL-18 Axis of the Inflammasome in Tumor Cells: A Modulator of the Th1/Tc1 Response of Tumor-Infiltrating T Lymphocytes in Colorectal Cancer
Cited by: 8
Author(s): Linda Bilonda Mutala, Cécile Deleine, Matilde Karakachoff, Delphine Dansette, Kathleen Ducoin, Romain Oger, Olivia Rousseau, J. Podevin, Emilie Duchalais, P Fourquier, Wassila El Alami Thomas, Pierre‐Antoine Gourraud, Jaafar Bennouna, Camille Brochier, Nadine Gervois, Céline Bossard, Anne Jarry
Software Mentions: 3
Published: over 5 years ago

10.1016/j.cell.2020.09.038

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity
Cited by: 1,368
Author(s): Carolyn Rydyznski Moderbacher, Sydney I. Ramirez, Jennifer M. Dan, Alba Grifoni, Kathryn M. Hastie, Daniela Weiskopf, Simon Bélanger, Robert G. Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G. Crotty, Cheryl Kim, Stephen A. Rawlings, José Mateus, Long Ping Victor Tse, April Frazier, Ralph S. Baric, Bjoern Peters, Jason A. Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty
Software Mentions: 3
Published: over 5 years ago

10.1016/j.cell.2019.06.006

Human Artificial Chromosomes that Bypass Centromeric DNA
Cited by: 71
Author(s): Glennis A. Logsdon, Craig W. Gambogi, Mikhail Liskovykh, Evelyne J. Barrey, Vladimir Larionov, Karen H. Miga, Patrick Heun, Ben E. Black
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13578-019-0356-1

Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma
Cited by: 42
Author(s): Xiao Zhu, Hui Luo, Ying Xu
Software Mentions: 3
Published: over 6 years ago

10.1186/s13578-021-00651-z

Incident disease associations with mosaic chromosomal alterations on autosomes, X and Y chromosomes: insights from a phenome-wide association study in the UK Biobank
Cited by: 11
Author(s): Shu-Hong Lin, Derek Brown, Birgit Rose, Felix R. Day, Olivia W. Lee, Seema Khan, Jada Hislop, Stephen J. Chanock, John R. B. Perry, Mitchell J. Machiela
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13578-021-00546-z

Alterations of RNA splicing patterns in esophagus squamous cell carcinoma
Cited by: 10
Author(s): Jiyu Ding, Chunquan Li, Yin-Wei Cheng, Zhifeng Du, Qiuyu Wang, Zhidong Tang, Chao Song, Qiaoxi Xia, Wenjing Bai, Gang Li, Wei Liu, Li‐Yan Xu, En‐Min Li, Bingli Wu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12964-019-0332-8

Low levels of pyruvate induced by a positive feedback loop protects cholangiocarcinoma cells from apoptosis
Cited by: 12
Author(s): Mingming Zhang, Yida Pan, Dehua Tang, Robert Dorfman, Lei Xu, Qian Zhou, Lixing Zhou, Yuming Wang, Li Yang, Yuyao Yin, Bo Kong, Helmut Frieß, Shimin Zhao, Jian‐Lin Wu, Lei Wang, Xiaoping Zou
Software Mentions: 3
Published: over 7 years ago

10.1186/s12964-019-0336-4

Autocrine motility factor promotes endometrial cancer progression by targeting GPER-1
Cited by: 22
Author(s): Yiran Li, Yuanhui Jia, Yiding Bian, Huan Tong, Junjie Qu, Kai Wang, Xiaoping Wan
Software Mentions: 3
Published: over 7 years ago

10.1038/s41419-019-1892-7

Epigenetic re-wiring of breast cancer by pharmacological targeting of C-terminal binding protein
Cited by: 7
Author(s): Jung S. Byun, Samson Park, Dae Ik Yi, Jee-Hye Shin, Sara Gil Hernandez, Stephen M. Hewitt, Marc C. Nicklaus, Megan L. Peach, Laura Guasch, Binwu Tang, Lalage M. Wakefield, Tingfen Yan, Ambar Caban, Alana Jones, Mohamed Kabbout, Nasreen A. Vohra, Anna María Nápoles, Sandeep K. Singhal, Ryan Yancey, Adriana De Siervi, Kevin Gardner
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41419-020-02963-3

EZH2 reduction is an essential mechanoresponse for the maintenance of super-enhancer polarization against compressive stress in human periodontal ligament stem cells
Cited by: 9
Author(s): Qian Li, Xiwen Sun, Yunyi Tang, Yanan Qu, Yanheng Zhou, Yu Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-020-02766-6

Deficiency of microRNA-628-5p promotes the progression of gastric cancer by upregulating PIN1
Cited by: 8
Author(s): Yang Chen, Yaran Wu, Shichong Yu, Hyejin Yang, Xiya Wang, Yali Zhang, Shunqin Zhu, Meng-Meng Jie, Cheng Liu, Xinzhe Li, You Zhou, Shi–Ming Yang, Yanwen Yang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-021-03955-7

LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Cited by: 22
Author(s): Renbo Guo, Benkui Zou, Yiran Liang, Jiasheng Bian, Jian Xu, Qian Zhou, Chao Zhang, Tao Chen, Mei Yang, Huansheng Wang, Fajun Pei, Zhonghua Xu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41419-021-04143-3

Pyroptosis inhibition improves the symptom of acute myocardial infarction
Cited by: 26
Author(s): Wenju Liu, Junwei Shen, Yanfei Li, Jiawen Wu, Xiaofeng Luo, Yuanyuan Yu, Yuhan Zhang, Liang Gu, Xiaobai Zhang, Cizhong Jiang, Jue Li
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41419-020-2736-1

Aberrantly expressed HORMAD1 disrupts nuclear localization of MCM8–MCM9 complex and compromises DNA mismatch repair in cancer cells
Cited by: 27
Author(s): Kang Liu, Yifan Wang, Quanfeng Zhu, Peng Li, Jiyuan Chen, Zhenghui Tang, Yuanming Shen, Xiaodong Cheng, Lin-Yu Lu, Yidan Liu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-019-1570-9

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition
Cited by: 30
Author(s): Nunzio Del Gaudio, Antonella Di Costanzo, Ning Qing Liu, Lidio Conte, Antimo Migliaccio, Michiel Vermeulen, Joost H.A. Martens, Hendrik G. Stunnenberg, Angela Nebbioso, Lucia Altucci
Software Mentions: 3
Published: about 7 years ago

10.1038/s41419-020-02769-3

LEF1 mediates osteoarthritis progression through circRNF121/miR-665/MYD88 axis via NF-кB signaling pathway
Cited by: 31
Author(s): Tianfu Wang, Zhiyu Hao, Changcheng Liu, Lebin Yuan, Li Li, Menghong Yin, Qing Li, Zhiming Qi, Zi Wang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-018-1042-7

A new signaling cascade linking BMP4, BMPR1A, ΔNp73 and NANOG impacts on stem-like human cell properties and patient outcome
Cited by: 23
Author(s): Thibault Voeltzel, Mario Flores-Violante, Florence Zylbersztejn, Sylvain Lefort, Marion Billandon, Sandrine Jeanpierre, Stéphane Joly, Gaëlle Fossard, Milen Milenkov, Frédéric Mazurier, Ali Nehme, Amine Belhabri, Étienne Paubelle, Xavier Thomas, Mauricette Michallet, Fawzia Louache, Franck‐Emmanuel Nicolini, Claude Caron de Fromentel, Véronique Maguer-Satta
Software Mentions: 3
Published: over 7 years ago

10.1038/s41419-020-03181-7

Calcium and TRPV4 promote metastasis by regulating cytoskeleton through the RhoA/ROCK1 pathway in endometrial cancer
Cited by: 53
Author(s): Xingchen Li, Yuan Cheng, Zhiqi Wang, Jingyi Zhou, Yuanyuan Jia, Xijing He, Lijun Zhao, Yangyang Dong, Fan Yuan, Xiao Yang, Boqiang Shen, Xiangsong Wu, Jiaqi Wang, Chunyang Xiong, Lihui Wei
Software Mentions: 3
Published: over 5 years ago

10.1038/s41420-021-00576-z

Identification of a prognostic ferroptosis-related lncRNA signature in the tumor microenvironment of lung adenocarcinoma
Cited by: 58
Author(s): Yugang Guo, Zhipeng Qu, Dandan Li, Fanghui Bai, Juan Xing, Qian Ding, Jiawei Zhou, Lunguang Yao, Qian Xu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41420-020-00329-4

Gut microbiota patterns associated with somatostatin in patients undergoing pancreaticoduodenectomy: a prospective study
Cited by: 10
Author(s): Guanqun Li, Tao Zhang, Yang WeiGuang, Hao-Liang Zhong, Peng Xiao, Liwei Liu, Yongwei Wang, Hua Chen, Rui Kong, Gang Wang, Hongtao Tan, Xuewei Bai, Yilong Li, Le Li, Bei Sun
Software Mentions: 3
Published: over 5 years ago

10.1038/s41421-018-0032-3

SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements
Cited by: 36
Author(s): Dang Vinh, Bernhard Strauß, Engin Cukuroglu, Iain C. Macaulay, Keng Boon Wee, Xiaoming Hu, Igor Ruiz de los Mozos, Caroline Lee, Andrew Harrison, Richard J. Butler, Sabine Dietmann, Jernej Ule, John C. Marioni, Christopher W. Smith, Jonathan Göke, M. Azim Surani
Software Mentions: 3
Published: about 8 years ago

10.1155/2020/6403641

Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems
Cited by: 10
Author(s): Itai Dattner, Harold J. Ship, Eberhard O. Voit
Software Mentions: 3
Published: about 6 years ago

10.1155/2020/8836493

Identification of Prognostic Biomarkers of Cutaneous Melanoma Based on Analysis of Tumor Mutation Burden
Cited by: 4
Author(s): Jiaqiong Lin, Ye Lin, Zhemin Huang, Xiaoyong Li
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/2018214

Construction and Comprehensive Analysis of Dysregulated Long Noncoding RNA-Associated Competing Endogenous RNA Network in Moyamoya Disease
Cited by: 2
Author(s): Xuefeng Gu, Da-Quan Jiang, Yanwen Yang, Peng Zhang, Guoqing Wan, Wangxian Gu, Junfeng Shi, Liying Jiang, Bing Chen, Yanjun Zheng, Dingsheng Liu, Shu Guo, Changlian Lu
Software Mentions: 3
Published: about 6 years ago

10.1155/2020/4574792

Functional Modular Network Identifies the Key Genes of Preoperative Inhalation Anesthesia and Intravenous Anesthesia in Off-Pump Coronary Artery Bypass Grafting
Cited by: 3
Author(s): Hongfei Zhao, Weitian Wang, Liping Liu, Junlong Wang, Quanzhang Yan
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/9991255

Identification of 5 Hub Genes Related to the Early Diagnosis, Tumour Stage, and Poor Outcomes of Hepatitis B Virus-Related Hepatocellular Carcinoma by Bioinformatics Analysis
Cited by: 13
Author(s): Rui Qiang, Zitong Zhao, Lu Tang, Qian Wang, Yanhong Wang, Qian Huang
Software Mentions: 3
Published: over 4 years ago

10.1186/s40649-021-00098-9

A model for the co-evolution of dynamic social networks and infectious disease dynamics
Cited by: 8
Author(s): Hendrik Nunner, Vincent Buskens, Mirjam Kretzschmar
Software Mentions: 3
Published: over 4 years ago

10.1186/s13054-019-2489-3

Prevalence of post-traumatic stress disorder symptoms in adult critical care survivors: a systematic review and meta-analysis
Cited by: 134
Author(s): Cássia Righy, Régis Goulart Rosa, Rodrigo Teixeira Amancio da Silva, Renata Kochhann, Celina Borges Migliavaca, Caroline Cabral Robinson, Stefania Pigatto Teche, Cassiano Teixeira, Fernando A. Bozza, Maicon Falavigna
Software Mentions: 3
Published: about 7 years ago

10.7759/cureus.16310

Functional Larynx Preservation in Patients With Locally Advanced Squamous Cell Carcinoma of the Larynx and Hypopharynx Treated With Induction Chemotherapy vs. Concurrent Chemoradiation Alone
Cited by: 1
Author(s): Anthony D. Nehlsen, Eric J. Lehrer, Daniel R. Dickstein, Marshall R. Posner, Krzysztof Misiukiewicz, Jerry Liu, Vishal Gupta, Richard L. Bakst, Sonam Sharma
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.cub.2021.03.056

Stable high-density and maternally inherited Wolbachia infections in Anopheles moucheti and Anopheles demeilloni mosquitoes
Cited by: 40
Author(s): Thomas Walker, Shannon Quek, Claire L. Jeffries, Janvier Bandibabone, Vishaal Dhokiya, Roland Bamou, Mojca Kristan, Louisa A. Messenger, Alexandra Gidley, Emily A. Hornett, Enyia R Anderson, Cintia Cansado-Utrilla, Shivanand Hegde, Bantuzeko Chimanuka, Jennifer Stevenson, Neil F. Lobo, Simon C. Wagstaff, Christophe Antonio-Nkondjio, Seth R. Irish, Eva Heinz, Grant L. Hughes
Software Mentions: 3
Published: about 5 years ago

10.1016/j.dib.2019.104199

Data on tree height and diameter for Pinus kesiya in Zambia
Cited by: 0
Author(s): P. Ng’andwe, Donald Chungu, Arthur M. Yambayamba, Alice Chilambwe
Software Mentions: 3
Published: almost 7 years ago

10.1093/database/baab057

COVIDium: a COVID-19 resource compendium
Cited by: 6
Author(s): Rohit Satyam, Malik Yousef, Sahar Qazi, Adil Manzoor Bhat, Khalid Raza
Software Mentions: 3
Published: almost 5 years ago

10.3390/dj7020058

Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome
Cited by: 10
Author(s): Lea M. Sedghi, Craig Byron, Ryan deM. Jennings, George E. Chlipala, Stefan J. Green, Laura Silo-Suh
Software Mentions: 3
Published: about 7 years ago

10.1111/desc.12906

Atypicalities in sleep and semantic consolidation in autism
Cited by: 18
Author(s): Fay Ellen Fletcher, Victoria C. P. Knowland, Sharyn M. Walker, M. Gareth Gaskell, Courtenay Norbury, Lisa Henderson
Software Mentions: 3
Published: over 6 years ago

10.1242/dev.196022

scRNA sequencing uncovers a TCF4-dependent transcription factor network regulating commissure development in mouse
Cited by: 6
Author(s): Marie-Theres Wittmann, Sayako Katada, Elisabeth Sock, Philipp Kirchner, Arif B. Ekici, Michael Wegner, Kinichi Nakashima, Dieter Chichung Lie, André Reis
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00125-021-05490-8

Replication and cross-validation of type 2 diabetes subtypes based on clinical variables: an IMI-RHAPSODY study
Cited by: 36
Author(s): Roderick C. Slieker, Louise A. Donnelly, Hugo Fitipaldi, Gerard A Bouland, G Giordano, Mikael Åkerlund, Mathias J. Gerl, Emma Ahlqvist, Ashfaq Ali, Iulian Dragan, Andreas Festa, Michael K. Hansen, Dina Mansour Aly, Min Kim, Dmitry Kuznetsov, Florence Mehl, Christian Klose, Kai Simons, Imre Pávó, Timothy J. Pullen, Tommi Suvitaival, Asger Wretlind, Peter Rossing, Valeriya Lyssenko, Cristina Legido‐Quigley, Leif Groop, Bernard Thorens, Paul W. Franks, Mark Ibberson, Guy A. Rutter, Joline W.J. Beulens, Leen M. ‘t Hart, Ewan R. Pearson
Software Mentions: 3
Published: about 5 years ago

10.1155/2018/7201914

Effect of Zishen Jiangtang Pill, a Chinese Herbal Product, on Rats with Diabetic Osteoporosis
Cited by: 6
Author(s): Huilin Li, Shufang Chu, Hengxia Zhao, Deliang Liu, Xuemei Liu, Qi Xi, Jianping Chen, LI Zeng-yin, Jinhua Li
Software Mentions: 3
Published: over 8 years ago

10.1111/eva.13086

Population genomic data in spider mites point to a role for local adaptation in shaping range shifts
Cited by: 11
Author(s): Lei Chen, Jing‐Tao Sun, Peng‐Yu Jin, Ary A. Hoffmann, Xiao‐Li Bing, Dian‐Shu Zhao, Xiao‐Feng Xue, Xiao‐Yue Hong
Software Mentions: 3
Published: almost 6 years ago

10.1111/eva.12658

Structural and compositional mismatch between captive and wild Atlantic salmon (<i>Salmo salar</i>) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
Cited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: almost 8 years ago

10.1111/eva.12762

Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials
Cited by: 15
Author(s): Abigail Colclough, Jukka Corander, Samuel K. Sheppard, Sion C. Bayliss, Michiel Vos
Software Mentions: 3
Published: over 7 years ago

10.1111/eva.12782

Mixed evidence for adaptation to environmental pollution
Cited by: 23
Author(s): Alessandra Loria, Melania E. Cristescu, Andrew Gonzalez
Software Mentions: 3
Published: about 7 years ago

10.1002/evl3.250

Should females prefer old males?
Cited by: 6
Author(s): Julia Carolina Segami, Martin I. Lind, Anna Qvarnström
Software Mentions: 3
Published: over 4 years ago

10.1007/s00221-020-06008-1

Conscious awareness modulates processing speed in the redundant signal effect
Cited by: 2
Author(s): Anna Matilda Helena Cederblad, Aleksandar Visokomogilski, Søren K. Andersen, Mary Joan MacLeod, Arash Sahraie
Software Mentions: 3
Published: about 5 years ago

10.1016/j.exger.2018.10.003

Identification of key pathways and metabolic fingerprints of longevity in C. elegans
Cited by: 45
Author(s): Arwen W. Gao, Reuben L. Smith, Michel van Weeghel, Rashmi Kamble, Georges E. Janssens, Riekelt H. Houtkooper
Software Mentions: 3
Published: over 7 years ago

10.12688/f1000research.13841.1

A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forest
Cited by: 13
Author(s): Erick S. LeBrun, Sanghoon Kang
Software Mentions: 3
Published: over 8 years ago

10.12688/f1000research.13996.2

Birds of primary and secondary forest and shrub habitats in the peat swamp of Berbak National Park, Sumatra
Cited by: 4
Author(s): Kevin Darras, Dedi Rahman, Waluyo Sugito, Yeni Mulyani, Dewi M. Prawiradilaga, Agus Rozali, Irfan Fitriawan, Teja Tscharntke
Software Mentions: 3
Published: about 8 years ago

10.12688/f1000research.27502.2

Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
Cited by: 2
Author(s): Hugo Maruyama, Ayako Masago, Takayuki Nambu, Chiho Mashimo, Kazuya Takahashi, Toshinori Okinaga
Software Mentions: 3
Published: about 5 years ago

10.12688/f1000research.22035.2

Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: a cross-sectional study
Cited by: 8
Author(s): Niradiz Reyes, Oscar Montes, Stephanie Figueroa, Raj K. Tiwari, Christopher C. Sollecito, Rebecca Emmerich, Mykhaylo Usyk, Jan Geliebter, Robert D. Burk
Software Mentions: 3
Published: about 6 years ago

10.1096/fj.201902061RR

Histone ChIP‐Seq identifies differential enhancer usage during chondrogenesis as critical for defining cell‐type specificity
Cited by: 14
Author(s): Kathleen Cheung, M.J. Barter, Julia Falk, Carole J. Proctor, Louise N. Reynard, David A. Young
Software Mentions: 3
Published: over 6 years ago

10.1002/2211-5463.13046

Development of an activity assay for characterizing deoxyhypusine synthase and its diverse reaction products
Cited by: 4
Author(s): Elisabeth Kaltenegger, Arunraj Saranya Prakashrao, Serhat Sezai Çiçek, Dietrich Ober
Software Mentions: 3
Published: over 5 years ago

10.1002/2211-5463.13078

Identification of key modules and hub genes in glioblastoma multiforme based on co‐expression network analysis
Cited by: 5
Author(s): Chun Li, Bangming Pu, Lianzhi Gu, Mingwei Zhang, Hongping Shen, Yuan Yuan, Lishang Liao
Software Mentions: 3
Published: over 5 years ago

10.1002/2211-5463.13226

Set2‐mediated H3K36 methylation states redundantly repress the production of antisense transcripts: role in transcription regulation
Cited by: 1
Author(s): Yu-Chao Mei, Jun Feng, Fei He, Yumin Li, Yafei Liu, Feng Li, Yu Chen, Hai-Ning Du
Software Mentions: 3
Published: almost 5 years ago

10.1002/2211-5463.12174

<i>Dicer</i>, a new regulator of pluripotency exit and LINE-1 elements in mouse embryonic stem cells
Cited by: 30
Author(s): Maxime Bodak, Daniel Cirera‐Salinas, Jian Yu, Richard Patryk Ngondo, Constance Ciaudo
Software Mentions: 3
Published: over 9 years ago

10.1002/fsn3.2291

Dynamic changes of volatile compounds and bacterial diversity during fourth to seventh rounds of Chinese soy sauce aroma liquor
Cited by: 12
Author(s): Lingchang Wang, Kai Zhong, Aimin Luo, Jian Chen, Yi Shen, Xi Wang, Qiang He, Hong Gao
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.00778

Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2019.00752

Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress–Responsive Pathways in Microalga Dunaliella
Cited by: 39
Author(s): Bahman Panahi, Mohammad Frahadian, Jacob T. Dums, Mohammad Amin Hejazi
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.619056

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.740167

Ancient Mitochondrial Genomes Reveal Extensive Genetic Influence of the Steppe Pastoralists in Western Xinjiang
Cited by: 6
Author(s): Chao Ning, Hou-Feng Zheng, Fan Zhang, Sihao Wu, Chunxiang Li, Yunlong Zhao, Yang Xu, Dong Wei, Yong Wu, Shizhu Gao, Jin Li, Yinqiu Cui
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2019.01215

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.00265

Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer
Cited by: 12
Author(s): Yan Wang, Steven Chen, Xi Rao, Yunlong Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00371

De novo Assembly and Transcriptome Characterization of Opisthopappus (Asteraceae) for Population Differentiation and Adaption
Cited by: 8
Author(s): Maofeng Chai, Shengnan Wang, Jie He, Wei Chen, Zelu Fan, Jia Li, Yiling Wang
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2020.00411

Identification and Validation of Potential Biomarkers and Their Functions in Acute Kidney Injury
Cited by: 19
Author(s): Jianwen Chen, Yalei Chen, Alberto Olivero, Xiangmei Chen
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2021.638555

Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome
Cited by: 9
Author(s): Huan Liu, Su-Xian Long, Shannon R. M. Pinson, Zhong Tang, Mary Lou Guerinot, David E. Salt, Fang‐Jie Zhao, Xin‐Yuan Huang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00083

Adjusting for Batch Effects in DNA Methylation Microarray Data, a Lesson Learned
Cited by: 57
Author(s): Emily Price, Wendy P. Robinson
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2016.00169

Genetic Networks in Mouse Retinal Ganglion Cells
Cited by: 15
Author(s): Felix L Struebing, Richard K. Lee, Robert W. Williams, Eldon E. Geisert
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2021.580190

Identification of Infertility-Associated Topologically Important Genes Using Weighted Co-expression Network Analysis
Cited by: 2
Author(s): Jingni Wu, Xiaomeng Xia, Ye Hu, Xiaoling Fang, Sandra Oršulić
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.645107

Identification of Major Loci and Candidate Genes for Meat Production-Related Traits in Broilers
Cited by: 4
Author(s): Xinting Yang, Jiahong Sun, Guiping Zhao, Wei Li, Xiaodong Tan, Maiqing Zheng, Furong Feng, Dawei Liu, Jie Wen, Ranran Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.709666

Establishment of an Endocytosis-Related Prognostic Signature for Patients With Low-Grade Glioma
Cited by: 4
Author(s): Dawei Wang, Shiguang Liu, Guangxin Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.503256

Construction and Analysis of a ceRNA Network in Cardiac Fibroblast During Fibrosis Based on in vivo and in vitro Data
Cited by: 7
Author(s): Qingyuan Gao, Haifeng Zhang, Zhi-Teng Chen, Yuewei Li, Shaohua Wang, Zheng Wen, Yong Xie, Jing-Ting Mai, Jingfeng Wang, Yangxin Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00133

Comparison of Adult Testis and Ovary MicroRNA Expression Profiles in Reeves’ Pond Turtles (Mauremys reevesii) With Temperature-Dependent Sex Determination
Cited by: 6
Author(s): Lei Xiong, Mengli Yang, Kai Zheng, Ziming Wang, Shengli Gu, Jiucui Tong, Jianjun Li, Nadar Ali Shah, Liuwang Nie
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.01062

DNA Methylation Changes Are Associated With an Incremental Ascent to High Altitude
Cited by: 20
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Jaclyn M. Goodrich, Dana C. Dolinoy, Trevor A. Day, Abigail W. Bigham, Tom D. Brutsaert
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.653837

Reproductive Isolation Between Taxonomically Controversial Forms of the Gray Voles (Microtus, Rodentia; Arvicolinae): Cytological Mechanisms and Taxonomical Implications
Cited by: 6
Author(s): Tatiana I Bikchurina, Fedor N. Golenishchev, Elena A. Kizilova, Ahmad Mahmoudi, Pavel M. Borodin
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.586476

Akkermansia muciniphila Improves Host Defense Against Influenza Virus Infection
Cited by: 24
Author(s): Xiaoru Hu, Ya Zhao, Yong Yang, Wenxiao Gong, Xiaomei Sun, Li Yang, Qiang Zhang, Meilin Jin
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.00154

Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients
Cited by: 15
Author(s): Julia K. Nuy, Matthias Hoetzinger, Martin W. Hahn, Daniela Beißer, Jens Boenigk
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.00082

Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1
Cited by: 25
Author(s): Yen I. Cheng, Li-Dek Chou, Yi Fang Chiu, Hsin Ta Hsueh, Chih Horng Kuo, Hsiu-An Chu
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2016.00143

Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies
Cited by: 22
Author(s): Daniel R. Mende, Frank O. Aylward, John M. Eppley, Torben Nielsen, Edward F. DeLong
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2018.03335

Microbial-Driven Butyrate Regulates Jejunal Homeostasis in Piglets During the Weaning Stage
Cited by: 33
Author(s): Xi Zhong, Zhongwei Zhang, Shujin Wang, Lili Cao, Lin Zhou, Aomin Sun, Zhendong Zhong, Miranda Nabben
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.541554

An Improved hgcAB Primer Set and Direct High-Throughput Sequencing Expand Hg-Methylator Diversity in Nature
Cited by: 28
Author(s): Caitlin M. Gionfriddo, Ann M. Wymore, Daniel S. Jones, Regina L. Wilpiszeski, Mackenzie M. Lynes, Geoff A. Christensen, Ally Soren, Cynthia C. Gilmour, Mircea Podar, Dwayne A. Elias
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.00932

Impact of Microbiota Transplant on Resistome of Gut Microbiota in Gnotobiotic Piglets and Human Subjects
Cited by: 10
Author(s): Liu Hu, Hua H. Wang
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.570960

Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Cited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.687533

Biosorption of Copper in Swine Manure Using Aspergillus and Yeast: Characterization and Its Microbial Diversity Study
Cited by: 1
Author(s): Yongkang Zhen, Mengzhi Wang, Yinmin Gu, Xiao Yu, Khuram Shahzad, Jun Xu, Yuqing Gong, Peizhen Li, Juan J. Loor
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2021.707281

Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups
Cited by: 3
Author(s): Runmao Lin, Y. L. Xia, Yao Liu, Danhua Zhang, Xiang Xiao, Xianyu Niu, Linjia Jiang, Xiaolin Wang, Aiping Zheng
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.02327

Relationships Between Fungal and Plant Communities Differ Between Desert and Grassland in a Typical Dryland Region of Northwest China
Cited by: 15
Author(s): Jianming Wang, Chen Chen, Ziqi Ye, Jingwen Li, Feng Yin, Qi Lu
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2016.00564

Individuality, Stability, and Variability of the Plaque Microbiome
Cited by: 69
Author(s): Daniel R. Utter, Jessica L. Mark Welch, Gary G. Borisy
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2021.649594

Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake
Cited by: 2
Author(s): Noor-Ul-Huda Ghori, Michael J. Wise, Andrew S. Whiteley
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2015.01300

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems
Cited by: 117
Author(s): Kezia Goldmann, Ingo Schöning, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2020.564160

High-Fat Diets Led to OTU-Level Shifts in Fecal Samples of Healthy Adult Dogs
Cited by: 8
Author(s): Logan Kilburn, Lucas R Koester, Stephan Schmitz‐Esser, Nick V. L. Serão, Mariana C Rossoni Serão
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.651282

Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas
Cited by: 46
Author(s): Olga V. Mavrodi, Janiece R. McWilliams, Jacob Peter, Anna Berim, Karl A. Hassan, Liam D. H. Elbourne, Melissa K. LeTourneau, David R. Gang, Ian T. Paulsen, David M. Weller, Linda S. Thomashow, Alex S. Flynt, Dmitri V. Mavrodi
Software Mentions: 3
Published: about 5 years ago

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