cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0218426

Impact of health service interventions on acute hospital use in community-dwelling persons with dementia: A systematic literature review and meta-analysis
Cited by: 17
Author(s): Claire Godard‐Sebillotte, Mélanie Le Berre, Tibor Schuster, Miguel Trottier, Isabelle Vedel
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-92222-y

Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense
Cited by: 14
Author(s): Jannie G. E. Henderickx, Romy D. Zwittink, Ingrid B. Renes, Richard A. van Lingen, Diny van Zoeren‐Grobben, Liesbeth J. Groot Jebbink, Sjef Boeren, Ruurd M. van Elburg, Jan Knol, Clara Belzer
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms20020438

Gut Microbiota and Predicted Metabolic Pathways in a Sample of Mexican Women Affected by Obesity and Obesity Plus Metabolic Syndrome
Cited by: 114
Author(s): Alejandra Chávez-Carbajal, Khemlal Nirmalkar, Ana Bertha Pérez-Lizaur, Fernando Hernández-Quiroz, Silvia Ramírez-del-Alto, Jaime García‐Mena, César Hernández‐Guerrero
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-5313-6

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0201889

Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing
Cited by: 28
Author(s): B. Larsen, Kyle M. Gardner, Carsten Pedersen, Marian Ørgaard, Zoë Migicovsky, Sean Myles, Torben Bo Toldam‐Andersen
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-021-92092-4

Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA
Cited by: 0
Author(s): Ina Jungersen Andresen, Russell J. S. Orr, Anders K. Krabberød, Kamran Shalchian-Tabrizi, Jon Bråte
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.649475

Genome-Wide Gene Expression Analysis of Mtb-Infected DC Highlights the Rapamycin-Driven Modulation of Regulatory Cytokines via the mTOR/GSK-3β Axis
Cited by: 3
Author(s): Marilena P. Etna, Martina Severa, Valerio Licursi, Manuela Pardini, Melania Cruciani, Fabiana Rizzo, Elena Giacomini, Gianfranco Macchia, Orazio Palumbo, Raffaella Stallone, Massimo Carella, Mark Livingstone, Rodolfo Negri, Sandra Pellegrini, Eliana M. Coccia
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.65902

Mechanistic theory predicts the effects of temperature and humidity on inactivation of SARS-CoV-2 and other enveloped viruses
Cited by: 134
Author(s): Dylan H. Morris, Claude Kwe Yinda, Amandine Gamble, Fernando W. Rossine, Qishen Huang, Trenton Bushmaker, Robert J. Fischer, M. Jeremiah Matson, Neeltje van Doremalen, Peter J. Vikesland, Linsey C. Marr, Vincent J. Munster, James O. Lloyd‐Smith
Software Mentions: 3
Published: about 5 years ago

10.1186/s13568-017-0444-8

The role of inorganic nitrogen in successful formation of granular biofilms for wastewater treatment that support cyanobacteria and bacteria
Cited by: 45
Author(s): Kristie Stauch-White, V. Srinivasan, Wenye Camilla Kuo-Dahab, Chul Park, Caitlyn S. Butler
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-2164-15-597

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera
Cited by: 73
Author(s): Nai-Yong Liu, Wei Xü, Alexie Papanicolaou, Shuang-Lin Dong, Alisha Anderson
Software Mentions: 3
Published: about 12 years ago

10.7554/eLife.09406

An internal promoter underlies the difference in disease severity between N- and C-terminal truncation mutations of Titin in zebrafish
Cited by: 83
Author(s): Jun Zou, Diana A. Tran, Mai Baalbaki, Ling Tang, Annie Poon, Angelo Pelonero, Erron W. Titus, Christiana Yuan, Chenxu Shi, Shruthi Patchava, Elizabeth Halper, Jasmine Garg, Irina Movsesyan, Chaoying Yin, Roland S. Wu, Lisa D. Wilsbacher, Jiandong Liu, Ron Hager, Shaun R. Coughlin, Martin Jinek, Clive R. Pullinger, John P. Kane, Daniel Hart, Pui Yan Kwok, Rahul C. Deo
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-017-3499-7

Visualization of consensus genome structure without using a reference genome
Cited by: 3
Author(s): Isao Tada, Yasuhiro Tanizawa, Masanori Arita
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0220804

Comparative genomics of Staphylococcus aureus associated with subclinical and clinical bovine mastitis
Cited by: 21
Author(s): Lis Souza Rocha, Danielle M. Silva, Mônica P. Silva, Pedro Marcus Pereira Vidigal, José Cleydson Ferreira da Silva, Simony Trevizan Guerra, Márcio Garcia Ribeiro, Tiago Antônio de Oliveira Mendes, Andréa de Oliveira Barros Ribon
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-91494-8

Uncovering of cytochrome P450 anatomy by SecStrAnnotator
Cited by: 7
Author(s): Adam Midlik, Veronika Navrátilová, Taraka Ramji Moturu, Jaroslav Koča, Radka Svobodová, Karel Berka
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-020-07092-x

Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood samples of European and Chinese origin
Cited by: 5
Author(s): Patrycja Daca-Roszak, Roman Jaksik, Julia Paczkowska, Michał Witt, Ewa Ziętkiewicz
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12862-021-01907-5

Cranial shape diversification in horses: variation and covariation patterns under the impact of artificial selection
Cited by: 4
Author(s): Pauline Hanot, Jamsranjav Bayarsaikhan, Claude Guintard, Ashleigh Haruda, Enkhbayar Mijiddorj, Renate Schafberg, William Taylor
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0108550

A Comparison of Next Generation Sequencing Technologies for Transcriptome Assembly and Utility for RNA-Seq in a Non-Model Bird
Cited by: 35
Author(s): Findley R. Finseth, Richard G. Harrison
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0205880

Biomass recalcitrance in barley, wheat and triticale straw: Correlation of biomass quality with classic agronomical traits
Cited by: 7
Author(s): Francisco J. Ostos-Garrido, Fernando Pistón, Leonardo D. Gómez, Simon J. McQueen‐Mason
Software Mentions: 3
Published: almost 8 years ago

10.7554/eLife.08490

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Cited by: 363
Author(s): Simon Roux, Steven J. Hallam, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-017-3632-7

Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats
Cited by: 39
Author(s): Claude Kwe Yinda, Roland Zell, Ward Deboutte, Mark Zeller, Nádia Conceição-Neto, Elisabeth Heylen, Piet Maes, Nick J. Knowles, Stephen Mbigha Ghogomu, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 3
Published: over 9 years ago

10.1111/acel.12707

Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-019-6229-5

Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae
Cited by: 14
Author(s): Marco Tulio Solano-De la Cruz, Jacel Adame-García, Josefat Gregorio-Jorge, Verónica Jiménez-Jacinto, Leticia Vega‐Alvarado, Lourdes Georgina Iglesias-Andreu, Esteban Elías Escobar-Hernández, Mauricio Luna-Rodríguez
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-016-2516-6

CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Cited by: 58
Author(s): Martin Oti, Jonas Falck, Martijn A. Huynen, Huiqing Zhou
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-018-5168-x

Evaluation of whole exome sequencing as an alternative to BeadChip and whole genome sequencing in human population genetic analysis
Cited by: 8
Author(s): Zoltán Maróti, Zsolt Boldogkői, Dóra Tombácz, M Snyder, Tibor Kalmár
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0118501

Adaptive Differentiation in Seedling Traits in a Hybrid Pine Species Complex, Pinus densata and Its Parental Species, on the Tibetan Plateau
Cited by: 4
Author(s): Jianghong Meng, Jian‐Feng Mao, Zhao Wang, Fangqian Xing, Xinyu Chen, Hao Liu, Zhen Xing, Xiaoru Wang, Yue Li
Software Mentions: 3
Published: over 11 years ago

10.1186/s40478-020-01037-x

Network analysis of the progranulin-deficient mouse brain proteome reveals pathogenic mechanisms shared in human frontotemporal dementia caused by GRN mutations
Cited by: 38
Author(s): Meixiang Huang, Erica Modeste, Eric B. Dammer, Paola Merino, Georgia Taylor, Duc M. Duong, Qiudong Deng, Christopher J. Holler, Marla Gearing, Dennis W. Dickson, Nicholas T. Seyfried, Thomas Kukar
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0209115

Strain specific differences in rates of Photosystem II repair in picocyanobacteria correlate to differences in FtsH protein levels and isoform expression patterns
Cited by: 9
Author(s): Erin M. Bonisteel, Brooke E. Turner, Cole D. Murphy, Jenna‐Rose Melanson, Nicole Marie Duff, Brian D. Beardsall, Kui Xu, Douglas A. Campbell, Amanda M. Cockshutt
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-4751-5

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast
Cited by: 33
Author(s): Cene Gostinčar, Jason E. Stajich, Jerneja Zupančič, Polona Zalar, Nina Gunde‐Cimerman
Software Mentions: 3
Published: over 8 years ago

10.3389/fcimb.2018.00420

Ascitic Bacterial Composition Is Associated With Clinical Outcomes in Cirrhotic Patients With Culture-Negative and Non-neutrocytic Ascites
Cited by: 11
Author(s): Yanfei Chen, Jing Guo, Ding Shi, Daiqiong Fang, Chunlei Chen, Lanjuan Li
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0198950

Negative self-referential processing is associated with genetic variation in the serotonin transporter-linked polymorphic region (5-HTTLPR): Evidence from two independent studies
Cited by: 6
Author(s): Justin Dainer-Best, Seth G. Disner, John E. McGeary, Bethany Hamilton, Christopher G. Beevers
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0243652

The Masters athlete in Olympic weightlifting: Training, lifestyle, health challenges, and gender differences
Cited by: 17
Author(s): Marianne Huebner, David E. Meltzer, Wenjuan Ma, Holly Arrow
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3257-2

MetaTopics: an integration tool to analyze microbial community profile by topic model
Cited by: 15
Author(s): Jifang Yan, Guohui Chuai, Tao Qi, Fangyang Shao, Chi Zhou, Chenyu Zhu, Jing Yang, Yifei Yu, Cong Shi, Kang Ning, Yuan He, Qi Liu
Software Mentions: 3
Published: over 9 years ago

10.1186/s12862-021-01782-0

An interplay of resource availability, population size and mutation rate potentiates the evolution of metabolic signaling
Cited by: 1
Author(s): Bhaskar Kumawat, Ramray Bhat
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-91284-2

BET inhibitor suppresses migration of human hepatocellular carcinoma by inhibiting SMARCA4
Cited by: 13
Author(s): Hae In Choi, Ga Yeong An, Mina Baek, Eunyoung Yoo, Jin Choul Chai, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0230905

Identification of human peripheral blood monocyte gene markers for early screening of solid tumors
Cited by: 11
Author(s): Siyang Chen, Menghan Liu, Bowen Liang, Shanghua Ge, Jie Peng, Haiyue Huang, Ye Xu, Xiaoli Tang, Libin Deng
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-019-3187-5

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks
Cited by: 51
Author(s): Attayeb Mohsen, Jonguk Park, Yi‐An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms19092658

Genome-Wide Analysis Elucidates the Role of CONSTANS-like Genes in Stress Responses of Cotton
Cited by: 11
Author(s): Wenqiang Qin, Ya Bo Yu, Yang Jin, Xindong Wang, Ji Liu, Jianping Xi, Zhi Li, Huiqin Li, Ge Zhao, Wei Hu, Chuanjia Chen, Fuguang Li
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-021-07700-4

Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides
Cited by: 8
Author(s): Lily D. Peck, Reuben W. Nowell, J. Flood, Matthew J. Ryan, Timothy G. Barraclough
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-015-1586-1

Comparative transcriptome profiling of Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses
Cited by: 61
Author(s): Peilong Sun, Yunxiang Mao, Guiyang Li, Min Cao, Fanna Kong, Lili Wang, Guoan Bi
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0254847

Both high and low pre-infection glucose levels associated with increased risk for severe COVID-19: New insights from a population-based study
Cited by: 16
Author(s): Michal Shauly‐Aharonov, Asher Shafrir, Ora Paltiel, Ronit Calderon‐Margalit, Rifaat Safadi, Roee Bicher, Orit Barenholz-Goultschin, Joshua Stokar
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-020-06925-z

Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing
Cited by: 9
Author(s): Jie Cheng, Huangqing Zhao, Ningbo Chen, Xiukai Cao, Quratulain Hanif, Li Pi, Linyong Hu, Buren Chaogetu, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Hong Chen
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229956

Trajectories toward maximum power and inequality in resource distribution networks
Cited by: 2
Author(s): Natalie Davis, Andrew Jarvis, Matt Aitkenhead, Gary Polhill
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-019-5816-9

The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation
Cited by: 19
Author(s): Guilherme Costa Baião, Daniela Schneider, Wolfgang J. Miller, Lisa Klasson
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-020-64704-y

Housefly (Musca domestica L.) associated microbiota across different life stages
Cited by: 28
Author(s): Nadieh de Jonge, Thomas Yssing Michaelsen, Rasmus Ejbye-Ernst, Anne Jensen, Majken Elley Nielsen, Simon Bahrndorff, Jeppe Lund Nielsen
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07900-y

LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data
Cited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-017-3719-1

Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Cited by: 42
Author(s): Xiaochun Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Chen Yan, Huaming Xu, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Surong Shuai, Lin Bai, Haifeng Liu, Jideng Ma, Long Jin, Anxiang Wen, Qin Wang, Guangxiang Zhu, Meng Xie, Jiayun Wu, Tao He, Chunyu Huang, Xiang Gao, Xuewei Li
Software Mentions: 3
Published: over 9 years ago

10.1098/rsos.150519

Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems
Cited by: 11
Author(s): Michael A. Irvine, Emma L. Jackson, Emma J. Kenyon, Kevan J. Cook, Matthew James Keeling, James C. Bull
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-017-14487-6

New method for the identification of arbuscular mycorrhizal fungi by proteomic-based biotyping of spores using MALDI-TOF-MS
Cited by: 16
Author(s): Thomas Crossay, Cyril Antheaume, Dirk Redecker, Lucie Bon, Nicolas Chedri, Clément Richert, Linda Guentas, Yvon Cavaloc, Hamid Amir
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12864-018-5197-5

Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit
Cited by: 40
Author(s): Peter A. McAtee, Lara Brian, Ben Curran, Otto van der Linden, Niels J. Nieuwenhuizen, Xiuyin Chen, Rebecca A. Henry-Kirk, Erin A. Stroud, Simona Nardozza, Jay Jayaraman, Erik H. A. Rikkerink, Cris Print, Andrew C. Allan, Matthew D. Templeton
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-021-90997-8

Fine scale analysis of malaria incidence in under-5: hierarchical Bayesian spatio-temporal modelling of routinely collected malaria data between 2012–2018 in Cameroon
Cited by: 3
Author(s): Célestin Danwang, Élie Khalil, Dorothy Achu, Marcelin Ateba, Moïse Abomabo, Jacob Souopgui, Mathilde De Keukeleire, Annie Robert
Software Mentions: 3
Published: about 5 years ago

10.1007/s00426-020-01392-3

Visual search in virtual 3D space: the relation of multiple targets and distractors
Cited by: 3
Author(s): Thorsten Plewan, Gerhard Rinkenauer
Software Mentions: 3
Published: over 5 years ago

10.1017/S0033291721001434

Coronavirus conspiracy suspicions, general vaccine attitudes, trust and coronavirus information source as predictors of vaccine hesitancy among UK residents during the COVID-19 pandemic
Cited by: 142
Author(s): Daniel Allington, Siobhan McAndrew, Vivienne Moxham-Hall, Bobby Duffy
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-16633-6

A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
Cited by: 45
Author(s): Jakob Herschend, Zacharias Brimnes Visby Damholt, Andrea Marion Marquard, Birte Svensson, Søren J. Sørensen, Per Hägglund, Mette Burmølle
Software Mentions: 3
Published: over 8 years ago

10.1002/prca.202000012

Targeted Mass Spectrometry of a Clinically Relevant PSA Variant from Post‐DRE Urines for Quantitation and Genotype Determination
Cited by: 7
Author(s): Joseph J. Otto, Vanessa L Correll, Hampus A. Engstroem, Naomi L. Hitefield, Brian Main, Brenna Albracht, Teresa L. Johnson‐Pais, Yang Li, Michael A. Liss, Paul C. Boutros, Thomas Kislinger, Robin J. Leach, O. John Semmes, Julius O. Nyalwidhe
Software Mentions: 3
Published: about 6 years ago

10.3390/proteomes9020029

Mining Proteome Research Reports: A Bird’s Eye View
Cited by: 1
Author(s): Jagajjit Sahu
Software Mentions: 3
Published: about 5 years ago

10.3390/proteomes8030024

Profiling of Inflammatory Proteins in Plasma of HIV-1-Infected Children Receiving Antiretroviral Therapy
Cited by: 9
Author(s): Mahlet Lemma, Stefan Petkov, Yonas Bekele, Beyene Petros, Rawleigh Howe, Francesca Chiodi
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-90857-5

Differential gene expression in Drosophila melanogaster and D. nigrosparsa infected with the same Wolbachia strain
Cited by: 5
Author(s): Matsapume Detcharoen, M. Schilling, Wolfgang Arthofer, Birgit C. Schlick‐Steiner, Florian M. Steiner
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-17127-1

A PLAG1 mutation contributed to stature recovery in modern cattle
Cited by: 38
Author(s): Yuri Tani Utsunomiya, Marco Milanesi, Adam Taiti Harth Utsunomiya, Rafaela Beatriz Pintor Torrecilha, Eui-Soo Kim, M. S. Costa, Tamíris Sayuri Aguiar, Steven G. Schroeder, Adriana Santana do Carmo, Roberto Carvalheiro, Haroldo Henrique Rezende Neves, Romulo Cláudio Morozini Padula, Thayla Souza Sussai, Ludmilla Balbo Zavarez, Rafael Silva Cipriano, Maria Margareth Theodoro Caminhas, George Hambrecht, Licia Colli, Elisa Eufemi, Paolo Ajmone‐Marsan, Deneb Cesana, Marco Sannazaro, Maurizio Buora, Michèle Morgante, George E. Liu, Derek M. Bickhart, Curtis P. Van Tassell, Johann Sölkner, Tad S. Sonstegard, José Fernando Garcia
Software Mentions: 3
Published: over 8 years ago

10.3390/proteomes5040031

Quantification of Cardiovascular Disease Biomarkers in Human Platelets by Targeted Mass Spectrometry
Cited by: 12
Author(s): Sebastian Malchow, Christina Looße, Albert Sickmann, Christin Lorenz
Software Mentions: 3
Published: almost 9 years ago

10.3390/cancers13153889

Chromosomal Translocations in NK-Cell Lymphomas Originate from Inter-Chromosomal Contacts of Active rDNA Clusters Possessing Hot Spots of DSBs
Cited by: 6
Author(s): Nickolai A. Tchurikov, Л. А. Урошлев, Elena S. Klushevskaya, Ildar R. Alembekov, Maria A. Lagarkova, Galina I. Kravatskaya, Vsevolod J. Makeev, Yuri V. Kravatsky
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers11060883

Chemotherapeutic Drugs Inhibiting Topoisomerase 1 Activity Impede Cytokine-Induced and NF-κB p65-Regulated Gene Expression
Cited by: 9
Author(s): Tabea Riedlinger, Marek Bartkuhn, Tobias Zimmermann, Sandra B. Hake, Andrea Nist, Thorsten Stiewe, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-17730-2

Constitutively elevated levels of SOCS1 suppress innate responses in DF-1 immortalised chicken fibroblast cells
Cited by: 28
Author(s): Efstathios S. Giotis, CS Ross, RC Robey, Axel Nohturfft, Stephen Goodbourn, Michael A. Skinner
Software Mentions: 3
Published: over 8 years ago

10.1073/pnas.2026289118

Dopaminergic brainstem disconnection is common to pharmacological and pathological consciousness perturbation
Cited by: 33
Author(s): Lennart R. B. Spindler, Andrea I. Luppi, R. Adapa, Michael Craig, Peter Coppola, Alexander R.D. Peattie, Anne Manktelow, Paola Finoia, Barbara J. Sahakian, Guy B. Williams, Judith Allanson, John D. Pickard, David Menon, Emmanuel A. Stamatakis
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.23642

Potential for subsets of wt-NPM1 primary AML blasts to respond to retinoic acid treatment
Cited by: 9
Author(s): Rodica P. Bunaciu, Robert MacDonald, Feng Gao, Lynn M. Johnson, Jeffrey D. Varner, Xin Wang, Sarah Nataraj, Mónica L. Guzmán, Andrew Yen
Software Mentions: 3
Published: over 8 years ago

10.1073/pnas.2022702118

Photosynthesis-independent production of reactive oxygen species in the rice bundle sheath during high light is mediated by NADPH oxidase
Cited by: 24
Author(s): Haiyan Xiong, Lei Hua, Ivan Reyna-Llorens, Yi Shi, Kun-Ming Chen, Nicholas Smirnoff, Johannes Kromdijk, Julian M. Hibberd
Software Mentions: 3
Published: about 5 years ago

10.1073/pnas.2013554117

HLA tapasin independence: broader peptide repertoire and HIV control
Cited by: 46
Author(s): Arman Bashirova, Mathias Viard, Vivek Naranbhai, Alba Grifoni, Wilfredo F. García-Beltrán, Marjan Akdag, Yuko Yuki, Xiaojiang Gao, Colm Ó'hUigín, Malini Raghavan, Steven M. Wolinsky, Jay H. Bream, Priya Duggal, Jeremy Martinson, Nelson L. Michael, Gregory D. Kirk, Susan Buchbinder, David W. Haas, James J. Goedert, Steven G. Deeks, Jacques Fellay, Bruce D. Walker, Philip Goulder, Peter Cresswell, Tim Elliott, Alessandro Sette, Jonathan M. Carlson, Mary Carrington
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-020-07310-6

Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
Cited by: 23
Author(s): Shan Feng, Hongcheng Fang, Xia Liu, Yixin Dong, Qingpeng Wang, Ke Qiang Yang
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers11030309

Compositional and Functional Differences between Microbiota and Cervical Carcinogenesis as Identified by Shotgun Metagenomic Sequencing
Cited by: 35
Author(s): Minji Kwon, Seung‐Woo Seo, Mi Kyung Kim, Dong Ock Lee, Myoung Cheol Lim
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-18656-5

Phenology Information Contributes to Reduce Temporal Basis Risk in Agricultural Weather Index Insurance
Cited by: 65
Author(s): Tobias Dalhaus, Oliver Mußhoff, Robert Finger
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers8060055

RASSF1A Site-Specific Methylation Hotspots in Cancer and Correlation with RASSF1C and MOAP-1
Cited by: 13
Author(s): Natalia Volodko, Mohamed Salla, Alaa Zare, El-Arbi Abulghasem, Krista Vincent, Matthew G.K. Benesch, Todd McMullen, Oliver F. Bathe, Lynne-Marie Postovit, Shairaz Baksh
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-021-90554-3

A potential role for somatostatin signaling in regulating retinal neurogenesis
Cited by: 5
Author(s): Kurt Weir, Dong Won Kim, Seth Blackshaw
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-90282-8

Transcriptional analysis of the response of C. elegans to ethanol exposure
Cited by: 6
Author(s): M.G. Sterken, Marijke H. van Wijk, Elizabeth C. Quamme, J.A.G. Riksen, Lucinda Carnell, Laura D. Mathies, Andrew G. Davies, J.E. Kammenga, Jill C. Bettinger
Software Mentions: 3
Published: about 5 years ago

10.1073/pnas.1903485116

Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling
Cited by: 13
Author(s): Peter Kreuzaler, Malcolm Clarke, Elizabeth J. Brown, Catherine H. Wilson, Roderik M. Kortlever, Nir Piterman, Trevor D. Littlewood, Gérard I. Evan, Jasmin Fisher
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-19269-2

Efficient isolation on Vero.DogSLAMtag cells and full genome characterization of Dolphin Morbillivirus (DMV) by next generation sequencing
Cited by: 10
Author(s): Simone Peletto, Claudio Caruso, Francesco Cerutti, Paola Modesto, Cristina Biolatti, Alessandra Pautasso, Carla Grattarola, Federica Giorda, Sandro Mazzariol, Walter Mignone, Loretta Masoero, Cristina Casalone, Pier Luigi Acutis
Software Mentions: 3
Published: over 8 years ago

10.1186/s12967-021-02972-6

The germline/somatic DNA damage repair gene mutations modulate the therapeutic response in Chinese patients with advanced pancreatic ductal adenocarcinoma
Cited by: 9
Author(s): Lin Shui, Xiaofen Li, Yang Peng, Jiangfang Tian, Shuangshuang Li, Du He, Ang Li, Bole Tian, Mao Li, Heli Gao, Ning An, Cheng Yi, Dan Cao
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers12092704

Mass Spectrometry Imaging for Reliable and Fast Classification of Non-Small Cell Lung Cancer Subtypes
Cited by: 13
Author(s): Mark Kriegsmann, Christiane Zgorzelski, Rita Casadonte, Kristina Schwamborn, Thomas Muley, Hauke Winter, Martin Eichhorn, Florian Eichhorn, Arne Warth, Sören‐Oliver Deininger, Petros Christopoulos, Michael Thomas, Thomas Longerich, Albrecht Stenzinger, Wilko Weichert, Carsten Müller‐Tidow, Jörg Kriegsmann, Peter Schirmacher, Katharina Kriegsmann
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13123019

NF-Y Subunits Overexpression in HNSCC
Cited by: 7
Author(s): Eugenia Bezzecchi, Andrea Bernardini, Mirko Ronzio, Claudia Miccolo, Susanna Chiocca, Diletta Dolfini, Roberto Mantovani
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-90330-3

ADAMTS12 acts as a tumor microenvironment related cancer promoter in gastric cancer
Cited by: 11
Author(s): Yangming Hou, Yingjuan Xu, Danping Wu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-021-04338-7

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data
Cited by: 1
Author(s): Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei
Software Mentions: 3
Published: almost 5 years ago

10.3390/cancers11111685

Intra-Patient Heterogeneity of Circulating Tumor Cells and Circulating Tumor DNA in Blood of Melanoma Patients
Cited by: 21
Author(s): Katharina Gorges, Lisa Wiltfang, Tobias M. Gorges, Alexander Sartori, Lina Hildebrandt, Laura Keller, Beate Volkmer, Sven Peine, Anna Babayan, Ingrid Moll, Stefan W. Schneider, Sören Twarock, Peter Mohr, Jens W. Fischer, Klaus Pantel
Software Mentions: 3
Published: almost 7 years ago

10.3389/fcimb.2020.617998

High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondii
Cited by: 9
Author(s): Benedikt M. Markus, Benjamin S. Waldman, Hernan Lorenzi, Sebastian Lourido
Software Mentions: 3
Published: over 5 years ago

10.1098/rspb.2021.0121

Dietary plasticity of North American herbivores: a synthesis of stable isotope data over the past 7 million years
Cited by: 5
Author(s): Melissa I. Pardi, Larisa R.G. DeSantis
Software Mentions: 3
Published: over 5 years ago

10.1098/rspb.2019.1487

Optimizing future biodiversity sampling by citizen scientists
Cited by: 41
Author(s): Corey T. Callaghan, Alistair G. B. Poore, Richard E. Major, Jodi J. L. Rowley, William K. Cornwell
Software Mentions: 3
Published: almost 7 years ago

10.3390/cancers12092671

Zoledronic Acid Abrogates Restraint Stress-Induced Macrophage Infiltration, PDGF-AA Expression, and Ovarian Cancer Growth
Cited by: 13
Author(s): Claudia B. Colon-Echevarria, Tatiana Ortiz, Lizette Maldonado, Melanie J. Hidalgo-Vargas, Jaileene Pérez‐Morales, Alexandra N. Aquino-Acevedo, Roberto Herrera-Noriega, Margarita Bonilla-Claudio, Eida Castro, Guillermo N. Armaiz-Pena
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-60655-6

High-resolution profiling of human cytomegalovirus cell-free DNA in human plasma highlights its exceptionally fragmented nature
Cited by: 3
Author(s): Vikas Peddu, Benjamin T. Bradley, Amanda M. Casto, Raj Shree, Brice G. Colbert, Hong Xie, Tracy K. Santo, Meei‐Li Huang, Edith Cheng, Eric Q. Konnick, Stephen J. Salipante, Keith R. Jerome, Christina M. Lockwood, Alexander L. Greninger
Software Mentions: 3
Published: over 6 years ago

10.3390/cancers13081750

Combined Assessment of Immune Checkpoint Regulator VISTA on Tumor-Associated Immune Cells and Platelet-to-Lymphocyte Ratio Identifies Advanced Germ Cell Tumors with Higher Risk of Unfavorable Outcomes
Cited by: 10
Author(s): Rafał Pęksa, Michał Kunc, Marta Popęda, Michał Piątek, Michał Bieńkowski, Jolanta Żok, Anna Starzyńska, Adrian Perdyan, M Sowa, Renata Duchnowska, Wojciech Biernat
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89325-x

A single neuron subset governs a single coactive neuron circuit in Hydra vulgaris, representing a possible ancestral feature of neural evolution
Cited by: 5
Author(s): Yukihiko Noro, Hiroshi Shimizu, Katsuhiko Mineta, Takashi Gojobori
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-18575-5

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle
Cited by: 45
Author(s): Bernardo Villarreal‐Ramos, Stefan Berg, Adam O. Whelan, Sébastien Holbert, Florence Carreras, Francisco J. Salguero, Bhagwati Khatri, Kerri M. Malone, Kévin Rue-Albrecht, Ronan G. Shaughnessy, Alicia Smyth, Gobena Ameni, Abraham Aseffa, Pierre Sarradin, Nathalie Winter, Martin Vordermeier, Stephen V. Gordon
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-60733-9

Deep Evolutionary History of the Phox and Bem1 (PB1) Domain Across Eukaryotes
Cited by: 13
Author(s): Sumanth K. Mutte, Dolf Weijers
Software Mentions: 3
Published: over 6 years ago

10.1098/rspb.2017.2116

Deep pelagic food web structure as revealed by <i>in situ</i> feeding observations
Cited by: 74
Author(s): C. Anela Choy, Steven H. D. Haddock, Bruce H. Robison
Software Mentions: 3
Published: over 8 years ago

10.5194/pb-7-41-2020

Testing lipid markers as predictors of all-cause morbidity, cardiac disease, and mortality risk in captive western lowland gorillas (&lt;i&gt;Gorilla gorilla gorilla&lt;/i&gt;)
Cited by: 3
Author(s): Ashley N. Edes, Janine L. Brown, Katie L. Edwards
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-62800-7

Antarctic Krill Lipid and Fatty acid Content Variability is Associated to Satellite Derived Chlorophyll a and Sea Surface Temperatures
Cited by: 15
Author(s): Nicole Hellessey, R. W. Johnson, Jessica A. Ericson, Peter D. Nichols, So Kawaguchi, Stephen Nicol, Nils Hoem, Patti Virtue
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-64252-5

Direct and indirect effects of plant diversity and phenoxy herbicide application on the development and reproduction of a polyphagous herbivore
Cited by: 11
Author(s): Yeisson Gutiérrez, David Ott, Christoph Scherber
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers13040827

Sulforaphane Inhibits the Expression of Long Noncoding RNA H19 and Its Target APOBEC3G and Thereby Pancreatic Cancer Progression
Cited by: 13
Author(s): Yiqiao Luo, Bin Yan, Li Liu, Libo Yin, Huihui Ji, Xuefeng An, Jury Gladkich, Zhimin Qi, Carolina De La Torre, Ingrid Herr
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-90278-4

SARS-CoV-2 and other human coronavirus show genome patterns previously associated to reduced viral recognition and altered immune response
Cited by: 5
Author(s): Giovanni Franzo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1009859

Metabolomics provide new insights into mechanisms of Wolbachia-induced paternal defects in Drosophila melanogaster
Cited by: 7
Author(s): Hua‐Bao Zhang, Zheng Cao, Jun-Xue Qiao, Zi-Qian Zhong, Chenchen Pan, Chen Liu, Limin Zhang, Yufeng Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.717832

Key Gene and Functional Pathways Identified in Unexplained Recurrent Spontaneous Abortion Using Targeted RNA Sequencing and Clinical Analysis
Cited by: 8
Author(s): Heng Gu, Longyu Li, Meng‐Xuan Du, Hang Xu, Mengge Gao, Xiaohua Liu, Xiangcai Wei, Xingming Zhong
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1009838

Probing the spatiotemporal patterns of HBV multiplication reveals novel features of its subcellular processes
Cited by: 10
Author(s): Lei Yue, Chang Li, Mingzhu Xu, Min Wu, Jiahui Ding, Jiangxia Liu, Xiaonan Zhang, Zhenghong Yuan
Software Mentions: 3
Published: about 5 years ago

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Papers Mentioning ggplot2 11,441