cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-83935-1

No time to rest: seasonal dynamics of non-structural carbohydrates in twigs of three Mediterranean tree species suggest year-round activity
Cited by: 16
Author(s): Anna Davidson, Sylvia T Le, Katelyn B. Cooper, Eden Lange, Maciej A. Zwieniecki
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.761

Concordance and discordance of sequence survey methods for molecular epidemiology
Cited by: 5
Author(s): Eduardo Castro-Nallar, Nur A. Hasan, Thomas A. Cebula, Rita R. Colwell, Richard A. Robison, W. Evan Johnson, Keith A. Crandall
Software Mentions: 3
Published: over 11 years ago

10.3390/molecules26164757

The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance
Cited by: 10
Author(s): William Edwin Hackett, Joseph Zaia
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2016.00169

Genetic Networks in Mouse Retinal Ganglion Cells
Cited by: 15
Author(s): Felix L Struebing, Richard K. Lee, Robert W. Williams, Eldon E. Geisert
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-015-1617-y

High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse
Cited by: 5
Author(s): Kevin Mäder, Leah Rae Donahue, Ralph Müller, Marco Stampanoni
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj.7970

Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Cited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/2064582

ID1 As a Prognostic Biomarker and Promising Drug Target Plays a Pivotal Role in Deterioration of Clear Cell Renal Cell Carcinoma
Cited by: 1
Author(s): Xiangmin Qiu, Yue Gu, Yilu Ni, Qianyin Li
Software Mentions: 3
Published: over 5 years ago

10.3390/plants10040798

Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron
Cited by: 2
Author(s): Reunreudee Kaewcheenchai, Phanchita Vejchasarn, Kousuke Hanada, Kazumasa Shirai, Chatchawan Jantasuriyarat, Piyada Juntawong
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-021-07835-4

Investigating the genetic architecture of disease resilience in pigs by genome-wide association studies of complete blood count traits collected from a natural disease challenge model
Cited by: 3
Author(s): Xue Bai, Tong Yang, Austin M. Putz, Zhiquan Wang, Changxi Li, Frédéric Fortin, John C. S. Harding, Michael K. Dyck, Jack C. M. Dekkers, Catherine J. Field, Graham Plastow
Software Mentions: 3
Published: almost 5 years ago

10.3390/plants9050592

From Genome to Field—Observation of the Multimodal Nematicidal and Plant Growth-Promoting Effects of Bacillus firmus I-1582 on Tomatoes Using Hyperspectral Remote Sensing
Cited by: 16
Author(s): Nik Susič, Uroš Žibrat, Lovro Sinkovič, Andrej Vončina, Jaka Razinger, M. Knapič, Aleš Sedlar, Saša Širca, Barbara Gerič Stare
Software Mentions: 3
Published: about 6 years ago

10.1128/mSystems.00134-17

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring
Cited by: 54
Author(s): Ursula M. McCormack, Tânia Curião, Toby Wilkinson, Barbara U. Metzler‐Zebeli, Henry Reyer, Tomás Ryan, Julia A. Calderon-Diaz, Fiona Crispie, Paul D. Cotter, Christopher J. Creevey, Gillian E. Gardiner, Peadar G. Lawlor
Software Mentions: 3
Published: almost 8 years ago

10.1128/mSystems.00040-18

Heterotroph Interactions Alter Prochlorococcus Transcriptome Dynamics during Extended Periods of Darkness
Cited by: 28
Author(s): Steven J. Biller, Allison Coe, Sara E. Roggensack, Sallie W. Chisholm
Software Mentions: 3
Published: almost 8 years ago

10.3390/plants10071291

A Transcriptional Analysis of the Genes Involved in the Ascorbic Acid Pathways Based on a Comparison of the Juice and Leaves of Navel and Anthocyanin-Rich Sweet Orange Varieties
Cited by: 7
Author(s): P. Caruso, Mario Russo, Marco Caruso, Mario Di Guardo, Giuseppe Russo, Simona Fabroni, Nicolina Timpanaro, Concetta Licciardello
Software Mentions: 3
Published: about 5 years ago

10.3390/metabo10050205

Sedentariness and Urinary Metabolite Profile in Type 2 Diabetic Patients, a Cross-Sectional Study
Cited by: 7
Author(s): Elisa Benetti, Erica Liberto, Davide Bressanello, Valentina Bordano, Arianna Carolina Rosa, Gianluca Miglio, Jonida Haxhi, Giuseppe Pugliese, Stefano Balducci, Chiara Emilia Irma Cordero
Software Mentions: 3
Published: about 6 years ago

10.1080/20002297.2021.1887680

Comparisons of oral, intestinal, and pancreatic bacterial microbiomes in patients with pancreatic cancer and other gastrointestinal diseases
Cited by: 15
Author(s): Mei Chung, Naisi Zhao, Richard Meier, Devin C. Koestler, Guojun Wu, Erika del Castillo, Bruce J. Paster, Kevin P. Charpentier, Jacques Izard, Karl T. Kelsey, Dominique S. Michaud
Software Mentions: 3
Published: over 5 years ago

10.3390/plants10040809

Shade Avoidance and Light Foraging of a Clonal Woody Species, Pachysandra terminalis
Cited by: 5
Author(s): Risa Iwabe, Kohei Koyama, Riko Komamura
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.580190

Identification of Infertility-Associated Topologically Important Genes Using Weighted Co-expression Network Analysis
Cited by: 2
Author(s): Jingni Wu, Xiaomeng Xia, Ye Hu, Xiaoling Fang, Sandra Oršulić
Software Mentions: 3
Published: over 5 years ago

10.3390/plants9121687

Genome Size Evolution and Dynamics in Iris, with Special Focus on the Section Oncocyclus
Cited by: 2
Author(s): Nour Abdel Samad, Oriane Hidalgo, Élie Saliba, Sonja Siljak‐Yakovlev, Kit Strange, Ilia J. Leitch, Magda Bou Dagher Kharrat
Software Mentions: 3
Published: over 5 years ago

10.1128/mSystems.00075-18

Metapopulation Structure of CRISPR-Cas Immunity in Pseudomonas aeruginosa and Its Viruses
Cited by: 21
Author(s): Whitney England, Ted Kim, Rachel J. Whitaker
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2021.645107

Identification of Major Loci and Candidate Genes for Meat Production-Related Traits in Broilers
Cited by: 4
Author(s): Xinting Yang, Jiahong Sun, Guiping Zhao, Wei Li, Xiaodong Tan, Maiqing Zheng, Furong Feng, Dawei Liu, Jie Wen, Ranran Liu
Software Mentions: 3
Published: about 5 years ago

10.1111/mcn.12891

Knowledge about the Developmental Origins of Health and Disease is independently associated with variation in diet quality during pregnancy
Cited by: 15
Author(s): Luseadra McKerracher, Tina Moffat, Mary Barker, Meghan McConnell, Stephanie A. Atkinson, Beth Murray‐Davis, Sarah D. McDonald, Deborah M. Sloboda
Software Mentions: 3
Published: over 6 years ago

10.3390/plants8100424

Climatic Niche Shift during Azolla filiculoides Invasion and Its Potential Distribution under Future Scenarios
Cited by: 9
Author(s): Argantonio Rodríguez‐Merino, Rocío Fernández‐Zamudio, Pablo García‐Murillo, Jesús Muñoz
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-5313-6

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.7791

Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)
Cited by: 4
Author(s): Anton A. Ermakov, Aleksandr Bobrovskikh, У. С. Зубаирова, Dmitrii K. Konstantinov, А. В. Дорошков
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-84928-w

Gut microbiota markers associated with obesity and overweight in Italian adults
Cited by: 132
Author(s): Vanessa Palmas, Silvia Pisanu, Veronica Madau, Emanuela Casula, Andrea Deledda, Roberto Cusano, Paolo Uva, Sarah Vascellari, Andrea Loviselli, Aldo Manzin, Fernanda Velluzzi
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/2545459

Identification of Differentially Expressed circRNAs, miRNAs, and Genes in Patients Associated with Cartilaginous Endplate Degeneration
Cited by: 0
Author(s): Haiwei Xu, Yongjin Li, Jianhua Li, Zhenxin Huo, Guowang Li, Lilong Du, Lijun Tian, Bei Xu
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pbio.3000599

A proteomic atlas of senescence-associated secretomes for aging biomarker development
Cited by: 602
Author(s): Nathan Basisty, Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao, Anja Holtz, Samah Shah, Vagisha Sharma, Luigi Ferrucci, Judith Campisi, Birgit Schilling
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202410

Systems pharmacology dissection of Epimedium targeting tumor microenvironment to enhance cytotoxic T lymphocyte responses in lung cancer
Cited by: 11
Author(s): Chao Huang, Zhihua Li, Jinglin Zhu, Xuetong Chen, Yuanyuan Hao, Ruijie Yang, Ruifei Huang, Jun Zhou, Zhenzhong Wang, Wei Xiao, Chunli Zheng, Yonghua Wang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-017-4385-z

Transcriptional effects of a positive feedback circuit in Drosophila melanogaster
Cited by: 5
Author(s): Jarosław Bryk, R. Guy Reeves, Floyd A. Reed, Jai A. Denton
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pbio.3001101

Stress and odorant receptor feedback during a critical period after hatching regulates olfactory sensory neuron differentiation in Drosophila
Cited by: 8
Author(s): Shadi Jafari, Johan Henriksson, Hua Yan, Mattias Alenius
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.709666

Establishment of an Endocytosis-Related Prognostic Signature for Patients With Low-Grade Glioma
Cited by: 4
Author(s): Dawei Wang, Shiguang Liu, Guangxin Wang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pbio.1002332

A Latex Metabolite Benefits Plant Fitness under Root Herbivore Attack
Cited by: 65
Author(s): Meret Huber, Janina Epping, Christian Schulze Gronover, Julia Fricke, Zohra Aziz, Théo Brillatz, Michael Swyers, Tobias G. Köllner, Heiko Vogel, Almuth Hammerbacher, Daniella Triebwasser-Freese, Christelle Robert, Koen J. F. Verhoeven, Veronica Preite, Jonathan Gershenzon, Matthias Erb
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-021-85455-4

Aging selectively dampens oscillation of lipid abundance in white and brown adipose tissue
Cited by: 12
Author(s): Ntsiki M. Held, M. Renate Buijink, Hyung L. Elfrink, Sander Kooijman, Georges E. Janssens, Angela C. M. Luyf, Mia L. Pras‐Raves, Frédéric M. Vaz, Stephan Michel, Riekelt H. Houtkooper, Michel van Weeghel
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-015-2063-6

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Cited by: 73
Author(s): Robert M. Bowers, Alicia Clum, Hope Tice, Joanne Lim, Kanwar Pal Singh, Doina Ciobanu, Chew Yee Ngan, Jan‐Fang Cheng, Susannah G. Tringe, Tanja Woyke
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-016-3369-8

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Cited by: 39
Author(s): Markus Schlegel, Martin Münsterkötter, Ulrich Güldener, Rémy Bruggmann, Angelo Duò, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grünig
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2020.503256

Construction and Analysis of a ceRNA Network in Cardiac Fibroblast During Fibrosis Based on in vivo and in vitro Data
Cited by: 7
Author(s): Qingyuan Gao, Haifeng Zhang, Zhi-Teng Chen, Yuewei Li, Shaohua Wang, Zheng Wen, Yong Xie, Jing-Ting Mai, Jingfeng Wang, Yangxin Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00133

Comparison of Adult Testis and Ovary MicroRNA Expression Profiles in Reeves’ Pond Turtles (Mauremys reevesii) With Temperature-Dependent Sex Determination
Cited by: 6
Author(s): Lei Xiong, Mengli Yang, Kai Zheng, Ziming Wang, Shengli Gu, Jiucui Tong, Jianjun Li, Nadar Ali Shah, Liuwang Nie
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.01062

DNA Methylation Changes Are Associated With an Incremental Ascent to High Altitude
Cited by: 20
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Jaclyn M. Goodrich, Dana C. Dolinoy, Trevor A. Day, Abigail W. Bigham, Tom D. Brutsaert
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22179349

Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
Cited by: 16
Author(s): Nicole Rachinger, Stefan Fischer, Ines Böhme, Lisa Linck-Paulus, Silke Kuphal, Melanie Kappelmann‐Fenzl, Anja‐Katrin Bosserhoff
Software Mentions: 3
Published: almost 5 years ago

10.1093/cercor/bhaa327

The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area
Cited by: 18
Author(s): Amanda K. Tilot, Ekaterina A. Khramtsova, Dan Liang, Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Lucía Colodro‐Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Siyao Liu, Sarah M. Brotman, Paul M. Thompson, Sarah E. Medland, Fabìo Macciardi, Barbara Elaine Stranger, Lea K. Davis, Simon E. Fisher, Jason L. Stein
Software Mentions: 3
Published: over 5 years ago

10.3390/molecules25184156

Occurrence of Acrylamide in Italian Baked Products and Dietary Exposure Assessment
Cited by: 15
Author(s): Francesco Esposito, Salvatore Velotto, Teresa Rea, Tommaso Stasi, Teresa Cirillo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pbio.3001108

Tooth morphology elucidates shark evolution across the end-Cretaceous mass extinction
Cited by: 6
Author(s): Mohamad Bazzi, Nicolás E. Campione, Per Ahlberg, Henning Blom, Benjamin P. Kear
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-019-5923-7

Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization
Cited by: 15
Author(s): Rong Ma, Juliana Rangel, Christina M. Grozinger
Software Mentions: 3
Published: almost 7 years ago

10.1128/AEM.01007-19

Vibrio parahaemolyticus in the Chesapeake Bay: Operational In Situ Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements
Cited by: 12
Author(s): Benjamin J. K. Davis, John M. Jacobs, Benjamin F. Zaitchik, Angelo DePaola, Frank C. Curriero
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.9611

An analysis of the perceived causes leading to task-failure in resistance-exercises
Cited by: 6
Author(s): Aviv Emanuel, Isaac Isur Rozen Smukas, Israel Halperin
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1003733

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets
Cited by: 23
Author(s): Alejandro Barrera, Ana Alastruey‐Izquierdo, Marı́a Jesús Martı́n, Isabel Cuesta, Juan Antonio Vizcaíno
Software Mentions: 3
Published: almost 12 years ago

10.3390/ijms22189799

Identification of miR-199a-5p, miR-214-3p and miR-99b-5p as Fibrosis-Specific Extracellular Biomarkers and Promoters of HSC Activation
Cited by: 7
Author(s): Catherine Jane Messner, Saskia Schmidt, Dilek Özkul, Carine Gaiser, Luigi Terracciano, Stephan Krähenbühl, Laura Suter‐Dick
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.653837

Reproductive Isolation Between Taxonomically Controversial Forms of the Gray Voles (Microtus, Rodentia; Arvicolinae): Cytological Mechanisms and Taxonomical Implications
Cited by: 6
Author(s): Tatiana I Bikchurina, Fedor N. Golenishchev, Elena A. Kizilova, Ahmad Mahmoudi, Pavel M. Borodin
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1007892

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans
Cited by: 2
Author(s): Chadi M. Saad-Roy, Nimalan Arinaminpathy, Ned S. Wingreen, Simon A. Levin, Joshua M. Akey, Bryan T. Grenfell
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-019-5803-1

Expression dynamics of repetitive DNA in early human embryonic development
Cited by: 31
Author(s): Cihangir Yandım, Gökhan Karakülah
Software Mentions: 3
Published: about 7 years ago

10.3390/biomedicines8060142

RNA Sequencing-Based Identification of Ganglioside GD2-Positive Cancer Phenotype
Cited by: 19
Author(s): Maxim Sorokin, И. В. Холоденко, Daniel V. Kalinovsky, T. V. Shamanskaya, Igor I. Doronin, Д. М. Коновалов, Aleksei Mironov, Denis Kuzmin, Daniil Nikitin, Sergey M. Deyev, Anton Buzdin, Р. В. Холоденко
Software Mentions: 3
Published: about 6 years ago

10.1093/texcom/tgaa038

Shared Numerosity Representations Across Formats and Tasks Revealed with 7 Tesla fMRI: Decoding, Generalization, and Individual Differences in Behavior
Cited by: 7
Author(s): Eric D. Wilkey, Benjamin Conrad, Darren J. Yeo, Gavin R. Price
Software Mentions: 3
Published: over 6 years ago

10.3390/molecules26082387

Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia
Cited by: 8
Author(s): Nadezhda Chernysheva, Evgeniya Bystritskaya, G. N. Likhatskaya, Olga I. Nedashkovskaya, Marina Isaeva
Software Mentions: 3
Published: about 5 years ago

10.1038/s41388-020-01470-1

The Greatwall kinase safeguards the genome integrity by affecting the kinome activity in mitosis
Cited by: 8
Author(s): Xavier Bisteau, Jo Ann Lee, Vinayaka Srinivas, Joanna H.S. Lee, Joanna Niska-Blakie, Gifford Tan, Shannon Yap, Kevin W Hom, C. K. Wong, Jeongjun Chae, Loo Chien Wang, Jin-Ho Kim, Giulia Rancati, Radoslaw M. Sobota, Chris Soon Heng Tan, Philipp Kaldis
Software Mentions: 3
Published: over 5 years ago

10.3390/vaccines9040332

Awareness, Attitudes and Clinical Practices Regarding Human Papillomavirus Vaccination among General Practitioners and Pediatricians in Switzerland
Cited by: 2
Author(s): Levy Jäger, Oliver Senn, Thomas Rosemann, Andreas Plate
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1006455

Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells
Cited by: 4
Author(s): Ernest Ho, Juan Nicolas Malagon, Abha Ahuja, Rama S. Singh, Ellen Larsen
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1007829

Improving the coverage of credible sets in Bayesian genetic fine-mapping
Cited by: 30
Author(s): Anna Hutchinson, Hope Watson, Chris Wallace
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-85516-8

First description of deep benthic habitats and communities of oceanic islands and seamounts of the Nazca Desventuradas Marine Park, Chile
Cited by: 10
Author(s): Jan M. Tapia-Guerra, Ariadna Mechó, Erin E. Easton, María de los Ángeles Gallardo, Matthias Gorny, Javier Sellanes
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-4845-0

Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton
Cited by: 7
Author(s): Yujuan Zhang, Chengxu Zhu, Yiran Ding, Yan Zeng, Gong‐Hua Li, Ling Yang, Jianfan Wen, Bin Chen
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2017.00543

Horses in Denmark Are a Reservoir of Diverse Clones of Methicillin-Resistant and -Susceptible Staphylococcus aureus
Cited by: 52
Author(s): Zohorul Islam, Carmen Espinosa-Gongora, Peter Damborg, Raphael N. Sieber, Rikke Munk, Louise Husted, Arshnee Moodley, Robert Skov, Jesper Larsen, Luca Guardabassi
Software Mentions: 3
Published: about 9 years ago

10.3390/molecules25215148

Targeting TGF-β-Mediated SMAD Signaling Pathway via Novel Recombinant Cytotoxin II: A Potent Protein from Naja naja oxiana Venom in Melanoma
Cited by: 9
Author(s): Afshin Derakhshani, Nicola Silvestris, Nima Hemmat, Zahra Asadzadeh, Behzad Baradaran, Niloufar Sadat Nourbakhsh, Leila Mobasheri, Parviz Vahedi, Morteza Shahmirzaie, Oronzo Brunetti, Hossein Safarpour, Behzad Baradaran
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86116-2

Multi-decadal trends in contingent mixing of Atlantic mackerel (Scomber scombrus) in the Northwest Atlantic from otolith stable isotopes
Cited by: 5
Author(s): Kohma Arai, Martin Castonguay, David H. Secor
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0213175

Reproducibility of sublingual microcirculation parameters obtained from sidestream darkfield imaging
Cited by: 13
Author(s): Luca Valerio, Ron J.G. Peters, Aeilko H. Zwinderman, Sara‐Joan Pinto‐Sietsma
Software Mentions: 3
Published: over 7 years ago

10.1080/20002297.2020.1814674

Grade C molar-incisor pattern periodontitis subgingival microbial profile before and after treatment
Cited by: 8
Author(s): Irina M. Velsko, Peter Harrison, Natalia I. Chalmers, Jennifer Barb, Huei-Jean Huang, Ikramuddin Aukhil, Luciana M. Shaddox
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.01603

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription
Cited by: 14
Author(s): Felix Grünberger, Robert Reichelt, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Reinhard Rachel, Dina Grohmann, Winfried Hausner
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-86247-6

Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis
Cited by: 18
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiß, Corinna Bang, André Franke, Maik Pietzner, Ali Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank Ulrich Weiß, Georg Homuth, Markus M. Lerch
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph18094655

Relationship of Test Positivity Rates with COVID-19 Epidemic Dynamics
Cited by: 22
Author(s): Yuki Furuse, Yura K. Ko, Kota Ninomiya, Motoi Suzuki, Hitoshi Oshitani
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1008603

Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence
Cited by: 5
Author(s): Tina Wagner, Lara Pérez-Martínez, René Schellhaas, Marta Barrientos-Moreno, Merve Öztürk, Félix Prado, Falk Butter, Brian Luke
Software Mentions: 3
Published: over 5 years ago

10.1128/mSystems.00186-18

Mobile Compensatory Mutations Promote Plasmid Survival
Cited by: 33
Author(s): Martin Zwanzig, Ellie Harrison, Michael A. Brockhurst, James P. J. Hall, Thomas U. Berendonk, Uta Berger
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.175

Data reuse and the open data citation advantage
Cited by: 358
Author(s): Heather Piwowar
Software Mentions: 3
Published: over 12 years ago

10.3389/fmicb.2020.574815

The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity Regimes
Cited by: 5
Author(s): João P. Santos, António G G Sousa, Hugo Leonardo Coelho Ribeiro, Catarina Magalhães
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.4837

Shelters can negatively affect growth and welfare in lumpfish if feed is delivered continuously
Cited by: 9
Author(s): Ása Johannesen, Nakita E. Joensen, Eyðfinn Magnussen
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pntd.0009178

High prevalence and diversity of Bartonella in small mammals from the biodiverse Western Ghats
Cited by: 7
Author(s): B. R. Ansil, Ian H. Mendenhall, Uma Ramakrishnan
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00199

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages
Cited by: 16
Author(s): Simon Roux, François Enault, Viviane Ravet, Olivier Pereira, Matthew B. Sullivan
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pntd.0008144

Factors associated with quality of life in patients with Chagas disease: SaMi-Trop project
Cited by: 9
Author(s): Nayara Dornela Quintino, Éster Cerdeira Sabino, José Luiz Padilha da Silva, Antônio Luiz Pinho Ribeiro, Ariela Mota Ferreira, Gabriela Lemes Davi, Cláudia Di Lorenzo Oliveira, Clareci Silva Cardoso
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-017-4198-0

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers
Cited by: 67
Author(s): Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin Ward‐Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Mélanie Waldenberger
Software Mentions: 3
Published: over 8 years ago

10.1038/s41388-021-01897-0

Dexamethasone suppresses immune evasion by inducing GR/STAT3 mediated downregulation of PD-L1 and IDO1 pathways
Cited by: 33
Author(s): Zhen Xiang, Zhijun Zhou, Shuzheng Song, Jun Li, Jun Ji, Ranlin Yan, Jiexuan Wang, Wei Cai, Wenjun Hu, Lu Zang, Zhenggang Zhu, Zhen Zhang, Min Li, Yingyan Yu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.00782

Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence
Cited by: 32
Author(s): Liang Wang, Jiawei Yan, Michael J. Wise, Qinghua Liu, James Asenso, Yue Huang, Shiyun Dai, Zhanzhong Liu, Yan Du, Daoquan Tang
Software Mentions: 3
Published: about 8 years ago

10.1016/j.mex.2019.09.013

Low-cost automatic temperature monitoring system with alerts for laboratory rearing units
Cited by: 3
Author(s): François Rebaudo, Romain Benoist
Software Mentions: 3
Published: over 7 years ago

10.1038/s41421-020-00215-4

A novel multistage antiplasmodial inhibitor targeting Plasmodium falciparum histone deacetylase 1
Cited by: 20
Author(s): Zhenghui Huang, Ruoxi Li, Tongke Tang, Dazheng Ling, Manjiong Wang, Dandan Xu, Maoxin Sun, Lulu Zheng, Feng Zhu, Hui Min, Rachasak Boonhok, Yan Ding, Yang Wen, Zhong Chen, Xiaokang Li, Yuxi Chen, Taiping Liu, Jiping Han, Jun Miao, Qiang Fang, Yaming Cao, Yun Tang, Jie Cui, Wei Xu, Liwang Cui, Jin Zhu, Gary Wong, Jian Li, Lubin Jiang
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.7506

Effects of digging by a native and introduced ecosystem engineer on soil physical and chemical properties in temperate grassy woodland
Cited by: 9
Author(s): Catherine E. Ross, Nicola Munro, Philip S. Barton, Maldwyn J. Evans, J. Gillen, Bennett MacDonald, Sue McIntyre, Saul A. Cunningham, Adrian D. Manning
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pntd.0009795

Variants of MIRNA146A rs2910164 and MIRNA499 rs3746444 are associated with the development of cutaneous leishmaniasis caused by Leishmania guyanensis and with plasma chemokine IL-8
Cited by: 7
Author(s): Tirza Gabrielle Ramos de Mesquita, José do Espírito Santo, Thaís Carneiro de Lacerda, Krys Layane Guimarães Duarte Queiroz, Cláudio Marcello da Silveira Júnior, José Pereira de Moura Neto, Lissianne Augusta Matos Gomes, Mara Lúcia Gomes de Souza, Marcus Vinítius de Farias Guerra, Rajendranath Ramasawmy
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-018-5041-y

Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)
Cited by: 30
Author(s): Chongjing Xia, Meinan Wang, Chuntao Yin, Omar E. Cornejo, Scot H. Hulbert, X. M. Chen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12915-018-0579-3

Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans
Cited by: 14
Author(s): Rebecca E. W. Kaplan, Amy K. Webster, Rojin Chitrakar, Joseph A. Dent, L. Ryan Baugh
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0148979

The Metagenome of Utricularia gibba's Traps: Into the Microbial Input to a Carnivorous Plant
Cited by: 19
Author(s): Luis David Alcaraz, Shamayim Martínez-Sánchez, Ignacio Torres, Enrique Ibarra-Laclette, Luis Herrera-Estrella
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0248263

Informed consent rates for neonatal randomized controlled trials in low- and lower middle-income versus high-income countries: A systematic review
Cited by: 6
Author(s): Jacqueline Patterson, Stuti Pant, Denise F. Jones, Syed Taha, Michael Jones, Melissa Bauserman, Paolo Montaldo, Carl Bose, Sudhin Thayyil
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2017.00796

Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome
Cited by: 33
Author(s): Christina A. Kellogg, Dawn B. Goldsmith, Michael A. Gray
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0082727

Tuberculosis Screening by Tuberculosis Skin Test or QuantiFERON®-TB Gold In-Tube Assay among an Immigrant Population with a High Prevalence of Tuberculosis and BCG Vaccination
Cited by: 22
Author(s): John A. Painter, Edward A. Graviss, Hoang Hoa Hai, Duong Thi Cam Nhung, Tran Thị Thanh Nga, Ngan P. Ha, Kirsten Wall, Le Thien Huong Loan, Matt Parker, Lilia P. Manangan, Rick O’Brien, Susan A. Maloney, Robert M. Hoekstra, Randall Reves
Software Mentions: 3
Published: over 12 years ago

10.1186/s13568-017-0444-8

The role of inorganic nitrogen in successful formation of granular biofilms for wastewater treatment that support cyanobacteria and bacteria
Cited by: 45
Author(s): Kristie Stauch-White, V. Srinivasan, Wenye Camilla Kuo-Dahab, Chul Park, Caitlyn S. Butler
Software Mentions: 3
Published: almost 9 years ago

10.1155/2020/4673250

Changes in Gut Microorganism in Patients with Positive Immune Antibody-Associated Recurrent Abortion
Cited by: 4
Author(s): Min Jin, Dong Li, Rui Ji, Wen Liu, Xiaofei Xu, Xin Feng
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0256784

Immunometabolic signatures predict risk of progression to sepsis in COVID-19
Cited by: 19
Author(s): Ana Sofía Herrera-Van Oostdam, Julio Enrique Castañeda-Delgado, Juan José Oropeza-Valdez, Juan Carlos Borrego, Joel Monárrez‐Espino, Jiamin Zheng, Rupasri Mandal, Lun Zhang, Elizabeth Soto-Guzmán, Julio César Fernández-Ruiz, Fátima de Lourdes Ochoa-González, Flor María Trejo Medinilla, Jesús Adrián López, David S. Wishart, José Antonio Enciso-Moreno, Yamilé López‐Hernández
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0186683

Coastal livelihood transitions under globalization with implications for trans-ecosystem interactions
Cited by: 6
Author(s): Daniel Kramer, Kara Stevens, Nigel Williams, Seeta A. Sistla, Adam B. Roddy, Gerald R. Urquhart
Software Mentions: 3
Published: over 8 years ago

10.1186/s12915-020-00906-0

Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation
Cited by: 35
Author(s): Lorraine A. Draper, Feargal J. Ryan, Marion Dalmasso, Pat G. Casey, A. McCann, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202853

Comprehensive analysis of genomic and immunological profiles in Chinese and Western hepatocellular carcinoma populations
Cited by: 4
Author(s): Wei Li, Hong Wu, Xuewen Xu, Zhang Yange
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0091041

Variation in RNA-Seq Transcriptome Profiles of Peripheral Whole Blood from Healthy Individuals with and without Globin Depletion
Cited by: 70
Author(s): Heesun Shin, Casey P. Shannon, Nick Fishbane, Jian Ruan, Mi Zhou, Robert Balshaw, J. Wilson-McManus, Raymond T. Ng, Bruce M. McManus, Scott J. Tebbutt
Software Mentions: 3
Published: over 12 years ago

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