Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: over 2 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README

Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.3389/fped.2021.613292
Intra-Household and Close-Contact SARS-CoV-2 Transmission Among Children – a Systematic Review
Cited by: 31
Author(s): Benedikt D. Spielberger, Tessa Goerne, Anne Geweniger, Philipp Henneke, Roland Elling
Software Mentions: 3
Published: about 5 years ago
10.3389/fphar.2020.559618
Metabolomics Deciphers Potential Targets of Xuefu Zhuyu Decoction Against Traumatic Brain Injury in Rat
Cited by: 9
Author(s): Teng Li, En Hu, Pengfei Li, Zhaoyu Yang, Yi-Ming Wu, Ruoqi Ding, Xiaofei Zhu, Tao Tang, Yang Wang
Software Mentions: 3
Published: over 5 years ago
10.3389/fphar.2021.691200
Comparative Efficacy and Acceptability of Anti-inflammatory Agents on Major Depressive Disorder: A Network Meta-Analysis
Cited by: 20
Author(s): Xiaoyi Hang, Yijie Zhang, Jingjing Li, Zhenzhen Li, Yi Zhang, Xuanhao Ye, Qisheng Tang, Wenjun Sun
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphar.2018.00151
Quality Variation of Goji (Fruits of Lycium spp.) in China: A Comparative Morphological and Metabolomic Analysis
Cited by: 48
Author(s): Ruyu Yao, Michael Heinrich, Yuanfeng Zou, Eike Reich, Xiaolei Zhang, Yu Chen, Caroline S. Weckerle
Software Mentions: 3
Published: over 8 years ago
10.3389/fphys.2020.00991
Protein Stores Regulate When Reproductive Displays Begin in the Male Caribbean Fruit Fly
Cited by: 6
Author(s): Clancy A. Short, John D. Hatle, Daniel A. Hahn
Software Mentions: 3
Published: almost 6 years ago
10.3389/fphys.2020.567312
Altered Cardiac Autonomic Regulation in Overweight and Obese Subjects: The Role of Age-and-Gender-Adjusted Statistical Indicators of Heart Rate Variability and Cardiac Baroreflex
Cited by: 6
Author(s): Nadia Solaro, Massimo Pagani, Daniela Lucini
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2021.621830
Identification of the Crucial Gene in Overflow Arteriovenous Fistula by Bioinformatics Analysis
Cited by: 3
Author(s): Zhengde Zhao, Qining Fu, Liangzhu Hu, Yangdong Liu
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphys.2019.01635
Fermented Animal Source Protein as Substitution of Fishmeal on Intestinal Microbiota, Immune-Related Cytokines and Resistance to Vibrio mimicus in Freshwater Crayfish (Cherax cainii)
Cited by: 20
Author(s): Muhammad A.B. Siddik, Ravi Fotedar, Reaz Chaklader, Javed Foysal, Ashfaqun Nahar, Janet Howieson
Software Mentions: 3
Published: over 6 years ago
10.3389/fphys.2020.608279
Protecting Intestinal Microenvironment Alleviates Acute Graft-Versus-Host Disease
Cited by: 5
Author(s): Zhengcan Zhou, Tao Shang, Xiurong Li, Hongyan Zhu, Yubo Qi, Xin Zhao, Xi Chen, Shi Z, Guixiang Pan, Yuefei Wang, Guanwei Fan, Xiumei Gao, Yan Zhu, Yi Feng
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2020.00860
Residential Altitude Associates With Endurance but Not Muscle Power in Young Swiss Men
Cited by: 6
Author(s): N Gassmann, Katarina L. Matthes, Patrick Eppenberger, Marek Brabec, Radoslaw Panczak, Marcel Zwahlen, Nicole Bender, Thomas Wyss, Frank J Rühli, Kaspar Staub
Software Mentions: 3
Published: almost 6 years ago
10.3389/fphys.2021.688946
The Role of Innate Immunity and Bioactive Lipid Mediators in COVID-19 and Influenza
Cited by: 15
Author(s): Sabina Sahanic, Judith Löffler‐Ragg, Piotr Tymoszuk, Richard Hilbe, Egon Demetz, Rebecca Katharina Masanetz, Markus Theurl, Johannes Holfeld, Can Gollmann‐Tepeköylü, Alexandar Tzankov, Guenter Weiss, Martin Giera, Ivan Tancevski
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphys.2021.612494
Prediction of Mortality in Hemodialysis Patients Using Moving Multivariate Distance
Cited by: 5
Author(s): Mingxin Liu, Véronique Legault, Tamàs Fülöp, Anne‐Marie Côté, Dominique Gravel, F. Guillaume Blanchet, Diana Leung, Sylvia Juhong Lee, Yuichi Nakazato, Alan A. Cohen
Software Mentions: 3
Published: over 5 years ago
10.3389/fpls.2017.00447
Using a Structural Root System Model to Evaluate and Improve the Accuracy of Root Image Analysis Pipelines
Cited by: 31
Author(s): Guillaume Lobet, Iko Tamar Koevoets, Manuel Noll, Patrick Meyer, Pierre Tocquin, Loïc Pagès, Claire Périlleux
Software Mentions: 3
Published: about 9 years ago
10.3389/fpls.2018.00485
Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata
Cited by: 39
Author(s): Monica Escandón, Mónica Meijón, Luís Valledor, Jesús Pascual, Glória Pinto, María Jesús Cañal
Software Mentions: 3
Published: about 8 years ago
10.3389/fpls.2021.725767
Vertical Canopy Profile and the Impact of Branches on Soybean Seed Composition
Cited by: 1
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Ignacio A. Ciampitti
Software Mentions: 3
Published: almost 5 years ago
10.3389/fpls.2020.607226
Nitrogen Use Efficiency in Durum Wheat Under Different Nitrogen and Water Regimes in the Mediterranean Basin
Cited by: 13
Author(s): Antonio Lupini, Giovanni Preiti, Giuseppe Badagliacca, Maria Rosa Abenavoli, Francesco Sunseri, Michele Monti, Monica Bacchi
Software Mentions: 3
Published: over 5 years ago
10.3389/fpls.2020.01292
Water Deficits Do Not Improve Fruit Quality in Grapevine Red Blotch Virus-Infected Grapevines (Vitis vinifera L.)
Cited by: 7
Author(s): A. D. Levin, Achala N. Kc
Software Mentions: 3
Published: almost 6 years ago
10.1534/g3.119.400037
Evolution of Antibiotic Synthesis Gene Clusters in the <i>Streptomyces globisporus</i> TFH56, Isolated from Tomato Flower
Cited by: 6
Author(s): Gyeongjun Cho, Youn‐Sig Kwak
Software Mentions: 3
Published: about 7 years ago
10.1534/g3.120.401153
Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to <i>Moniliophthora</i> spp. in Cacao (<i>Theobroma cacao</i> L.)
Cited by: 20
Author(s): Jaime A. Osorio-Guarín, Jhon A. Berdugo-Cely, Roberto A. Coronado-Silva, Eliana Baez, Yeirme Jaimes, Roxana Yockteng
Software Mentions: 3
Published: about 6 years ago
10.1534/g3.120.401327
Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National<i>Pyrus</i>Collection
Cited by: 16
Author(s): Sara Montanari, Joseph D. Postman, Nahla V. Bassil, David B. Neale
Software Mentions: 3
Published: almost 6 years ago
10.1534/g3.120.401516
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, <i>Basidiobolus</i>
Cited by: 20
Author(s): Javier F. Tabima, Ian A. Trautman, Ying Chang, Yan Wang, Stephen J. Mondo, Alan Kuo, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora
Software Mentions: 3
Published: almost 6 years ago
10.1093/g3journal/jkab024
Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum
Cited by: 3
Author(s): Rajanikanth Govindarajulu, Ashley N Hostetler, Yuguo Xiao, Srinivasa R. Chaluvadi, Margarita Mauro-Herrera, Muriel L. Siddoway, Clinton Whipple, Jeffrey L. Bennetzen, Katrien M. Devos, Andrew N. Doust, Jennifer Hawkins
Software Mentions: 3
Published: over 5 years ago
10.12688/gatesopenres.13029.2
Identifying population segments for effective intervention design and targeting using unsupervised machine learning: an end-to-end guide
Cited by: 12
Author(s): Elisabeth Engl, Peter Smittenaar, Sema K. Sgaier
Software Mentions: 3
Published: over 6 years ago
10.3390/genes9020104
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models
Cited by: 69
Author(s): Aeriel D. Belk, Zhenjiang Zech Xu, David Carter, Aaron M. Lynne, Sibyl R. Bucheli, Rob Knight, Jessica L. Metcalf
Software Mentions: 3
Published: over 8 years ago
10.3390/genes9060280
The Genetic Architecture Underlying the Evolution of a Rare Piscivorous Life History Form in Brown Trout after Secondary Contact and Strong Introgression
Cited by: 24
Author(s): Arne Jacobs, Martin Hughes, Paige C. Robinson, Colin E. Adams, Kathryn R. Elmer
Software Mentions: 3
Published: about 8 years ago
10.3390/genes9060294
Tissue Specificity and Dynamics of Sex-Biased Gene Expression in a Common Frog Population with Differentiated, Yet Homomorphic, Sex Chromosomes
Cited by: 22
Author(s): Wen‐Juan Ma, Paris Veltsos, Melissa A. Toups, Nicolas Rodrigues, Roberto Sermier, Daniel L. Jeffries, Nicolas Perrin
Software Mentions: 3
Published: about 8 years ago
10.3390/genes9080407
Seasonal and Sexual Differences in the Microbiota of the Hoopoe Uropygial Secretion
Cited by: 10
Author(s): Sonia M. Rodríguez‐Ruano, Manuel Martín‐Vivaldi, Juan Manuel Peralta‐Sánchez, Ana B. García-Martín, Ángela Martínez-García, Juan José Soler, Eva Valdivia, Manuel Martínez‐Bueno
Software Mentions: 3
Published: almost 8 years ago
10.3390/genes10110946
Coding and Non-Coding RNA Abnormalities in Bipolar Disorder
Cited by: 22
Author(s): Jurjen J. Luykx, Fabrizio Giuliani, Giuliano Giuliani, Jan H. Veldink
Software Mentions: 3
Published: over 6 years ago
10.3390/genes11010003
Functionally Annotating Regulatory Elements in the Equine Genome Using Histone Mark ChIP-Seq
Cited by: 28
Author(s): Nicole B. Kingsley, Colin Kern, Catherine Creppe, Erin N. Hales, Huaijun Zhou, Theodore S. Kalbfleisch, James N. MacLeod, Jessica L Petersen, Carrie J. Finno, Rebecca R. Bellone
Software Mentions: 3
Published: over 6 years ago
10.3390/genes11020234
The Genetic Basis of Natural Variation in Drosophila melanogaster Immune Defense against Enterococcus faecalis
Cited by: 14
Author(s): J. R. Chapman, Maureen A. Dowell, Rosanna Chan, Robert L. Unckless
Software Mentions: 3
Published: over 6 years ago
10.3390/genes11080884
Transcriptome Profiling and Differential Gene Expression in Canine Microdissected Anagen and Telogen Hair Follicles and Interfollicular Epidermis
Cited by: 7
Author(s): Dominique J Wiener, Kátia R. Groch, Magdalena A. T. Brunner, Tosso Leeb, Vidhya Jagannathan, Monika Maria Welle
Software Mentions: 3
Published: almost 6 years ago
10.3390/genes11091027
A Highly Polymorphic Panel Consisting of Microhaplotypes and Compound Markers with the NGS and Its Forensic Efficiency Evaluations in Chinese Two Groups
Cited by: 8
Author(s): Xiaoye Jin, Xingru Zhang, Chunmei Shen, Yanfang Liu, Wei Cui, Chong Chen, Yuxin Guo, Bofeng Zhu
Software Mentions: 3
Published: almost 6 years ago
10.3390/genes11121499
Transcriptome Analyses Reveal Differential Transcriptional Profiles in Early- and Late-Dividing Porcine Somatic Cell Nuclear Transfer Embryos
Cited by: 7
Author(s): Zhiguo Liu, Guangming Xiang, Kui Xu, Jingjing Che, Changjiang Xu, Kui Li, Bingyuan Wang, Yulian Mu
Software Mentions: 3
Published: over 5 years ago
10.3390/genes12020185
Graph Algorithms for Mixture Interpretation
Cited by: 4
Author(s): Benjamin Crysup, August E. Woerner, Jonathan L. King, Bruce Budowle
Software Mentions: 3
Published: over 5 years ago
10.3390/genes12040522
Kinetics and Topology of DNA Associated with Circulating Extracellular Vesicles Released during Exercise
Cited by: 21
Author(s): Elmo Neuberger, Barlo Hillen, Katharina Mayr, Perikles Simon, Eva-Maria Krämer-Albers, Alexandra Brahmer
Software Mentions: 3
Published: about 5 years ago
10.3390/genes12081183
Whole-Genome Differentially Hydroxymethylated DNA Regions among Twins Discordant for Cardiovascular Death
Cited by: 1
Author(s): Jun Dai, Ming-Ying Leung, Weihua Guan, Han Guo, Ruth E. Krasnow, Thomas J. Wang, Wael El-Rifai, Zhongming Zhao, Terry Reed
Software Mentions: 3
Published: almost 5 years ago
10.1007/s00418-020-01933-2
Developmental exposure window influences silver toxicity but does not affect the susceptibility to subsequent exposures in zebrafish embryos
Cited by: 2
Author(s): Paige C. Robinson, Hannah R. Littler, Anke Lange, Eduarda M. Santos
Software Mentions: 3
Published: over 5 years ago
10.1038/s41438-019-0132-8
Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by genotyping-by-sequencing (GBS)
Cited by: 57
Author(s): Leandro Pereira-Dias, Santiago Vilanova, Ana Fita, Jaime Prohens, Adrián Rodríguez‐Burruezo
Software Mentions: 3
Published: about 7 years ago
10.1038/s41438-020-0328-y
A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis
Cited by: 18
Author(s): Jinghe Xie, Haifeng Zhao, Kunpeng Li, Rui Zhang, Yanling Jiang, Meimei Wang, Xijie Guo, Ben Yu, Hongzhi Kong, Yuannian Jiao, Guiyun Xu
Software Mentions: 3
Published: almost 6 years ago
10.1038/hortres.2017.38
Applying generalized additive models to unravel dynamic changes in anthocyanin biosynthesis in methyl jasmonate elicited grapevine (Vitis vinifera cv. Gamay) cell cultures
Cited by: 13
Author(s): Nay Min Min Thaw Saw, C. Moser, Stefan Martens, Pietro Franceschi
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41438-020-0322-4
Complex migration history is revealed by genetic diversity of tomato samples collected in Italy during the eighteenth and nineteenth centuries
Cited by: 2
Author(s): M. R. Ercolano, Antimo Di Donato, Walter Sanseverino, Maria Mafalda Barbella, Antonino De Natale, Luigi Frusciante
Software Mentions: 3
Published: almost 6 years ago
10.1002/hbm.25036
Dynamic functional connectivity between nucleus accumbens and the central executive network relates to chronic cannabis use
Cited by: 8
Author(s): Hye Bin Yoo, Blake Edward Moya, Francesca M. Filbey
Software Mentions: 3
Published: about 6 years ago
10.1186/s12979-020-00191-z
In-depth immune cellular profiling reveals sex-specific associations with frailty
Cited by: 16
Author(s): Leonard Daniël Samson, A. Boots, José A. Ferreira, H. Susan J. Picavet, Lia G. H. de Rond, Mary-lène de Zeeuw-Brouwer, W M Monique Verschuren, Anne‐Marie Buisman, Peter Engelfriet
Software Mentions: 3
Published: about 6 years ago
10.1002/iid3.379
Prognostic value of lipid metabolism‐related genes in head and neck squamous cell carcinoma
Cited by: 13
Author(s): Ying Xiong, Shaohua Yu, Yisi Feng, Shipei Zhuo, Bozhen Cui, Zhigang Zhang
Software Mentions: 3
Published: over 5 years ago
10.1002/iid3.407
Development of a prognostic index based on immunogenomic landscape analysis in glioma
Cited by: 2
Author(s): Haitao Luo, Chuming Tao, Peng Wang, Jingying Li, Kai Huang, Xiang Yang Zhu
Software Mentions: 3
Published: over 5 years ago
10.1007/s00251-016-0918-x
HLA class I molecular variation and peptide-binding properties suggest a model of joint divergent asymmetric selection
Cited by: 29
Author(s): Stéphane Bühler, José Manuel Nunes, Alicia Sanchez‐Mazas
Software Mentions: 3
Published: about 10 years ago
10.4049/immunohorizons.1900098
Glucose-Regulated Protein 78 Autoantibodies Are Associated with Carotid Atherosclerosis in Chronic Obstructive Pulmonary Disease Patients
Cited by: 3
Author(s): Thi K. Tran-Nguyen, Divay Chandra, Kaiyu Yuan, Phani K. Patibandla, Khanh Nguyen, Palaniappan Sethu, Yingze Zhang, Jun Xue, James A. Mobley, Young-il Kim, Ali Shoushtari, Joseph K. Leader, Jessica Bon, Frank C. Sciurba, Steven R. Duncan
Software Mentions: 3
Published: over 6 years ago
10.1007/s12088-019-00847-5
Identification of Key Candidate Genes and Pathways of Candida albicans-Infected Human Umbilical Vein Endothelial Cells and Drug Screening
Cited by: 1
Author(s): Wei Jiang, Ping Liu, Jianlei Zhang, Wenjie Yang
Software Mentions: 3
Published: over 6 years ago
10.3390/insects11050301
Prevalence of Flavescence Dorée Phytoplasma-Infected Scaphoideus titanus in Different Vineyard Agroecosystems of Northwestern Italy
Cited by: 15
Author(s): Matteo Ripamonti, Mattia Pegoraro, Marika Rossi, Nicola Bodino, Dylan Beal, Loretta Panero, Cristina Marzachı̀, Domenico Bosco
Software Mentions: 3
Published: about 6 years ago
10.3390/insects11060340
Detection of Wolbachia Infections in Natural and Laboratory Populations of the Moroccan Hessian Fly, Mayetiola destructor (Say)
Cited by: 4
Author(s): Naima Bel Mokhtar, Amal Maurady, Mohammed Réda Britel, Mustapha El Bouhssini, Costas Batargias, Panagiota Stathopoulou, Elias Asimakis, George Tsiamis
Software Mentions: 3
Published: about 6 years ago
10.3390/insects12020127
Biocontrol of Melolontha spp. Grubs in Organic Strawberry Plantations by Entomopathogenic Fungi as Affected by Environmental and Metabolic Factors and the Interaction with Soil Microbial Biodiversity
Cited by: 8
Author(s): Małgorzata Tartanus, Ewa M. Furmanczyk, Loredana Canfora, Flavia Pinzari, C. Tkaczuk, A. Majchrowska-Safaryan, Eligio Malusà
Software Mentions: 3
Published: over 5 years ago
10.3390/insects12040369
From Phenology and Habitat Preferences to Climate Change: Importance of Citizen Science in Studying Insect Ecology in the Continental Scale with American Red Flat Bark Beetle, Cucujus clavipes, as a Model Species
Cited by: 8
Author(s): Radomir Jaskuła, Marta Kolanowska, Marek Michalski, Axel Schwerk
Software Mentions: 3
Published: about 5 years ago
10.3390/insects12050428
Seasonal Abundance and Diversity of Egg Parasitoids of Halyomorpha halys in Kiwifruit Orchards in China
Cited by: 6
Author(s): Gonzalo A. Avila, Juhong Chen, Wenjing Li, Maryam Alavi, Qianqian Mi, W.R.M. Sandanayaka, Feng Zhang, Jinping Zhang
Software Mentions: 3
Published: about 5 years ago
10.3390/insects12050462
Monitoring Exotic Beetles with Inexpensive Attractants: A Case Study
Cited by: 10
Author(s): Enrico Ruzzier, Andrea Galli, Luciano Bani
Software Mentions: 3
Published: about 5 years ago
10.1590/S1677-5538.IBJU.2020.1104
Exploration of the core genes in ulcerative interstitial cystitis/bladder pain syndrome
Cited by: 4
Author(s): Hao Wu, Qiuju Su, Ziyi Zhang, Ze Zhang, Shenglin Gao, Chen Lü, Li Zuo, Lifeng Zhang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s40635-015-0062-1
Tumor necrosis factor receptor 1 (TNFRI) for ventilator-associated pneumonia diagnosis by cytokine multiplex analysis
Cited by: 15
Author(s): Ignacio Martín‐Loeches, Lieuwe D. J. Bos, Pedro Póvoa, Paula Ramírez, Marcus J. Schultz, Antoni Torres, Antonio Artigas
Software Mentions: 3
Published: almost 11 years ago
10.1093/jamiaopen/ooab054
Five-year pediatric use of a digital wearable fitness device: lessons from a pilot case study
Cited by: 2
Author(s): Kimayani D. Butte, Amir Bahmani, Atul J. Butte, Xiao Li, M Snyder
Software Mentions: 3
Published: almost 5 years ago
10.1172/jci.insight.137029
C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling
Cited by: 23
Author(s): Alexander Wood, Arlette Vassallo, Marie-Hélène Ruchaud-Sparagano, Jonathan Scott, Carmelo Zinnato, Carmen Gonzalez-Tejedo, Kamal Kishore, Clive S. D’Santos, A. John Simpson, David K. Menon, Charlotte Summers, Edwin R. Chilvers, Klaus Okkenhaug, Andrew Conway Morris
Software Mentions: 3
Published: almost 6 years ago
10.1172/jci.insight.139538
Curative in vivo hematopoietic stem cell gene therapy of murine thalassemia using large regulatory elements
Cited by: 17
Author(s): Hongjie Wang, Aphrodite Georgakopoulou, Chang Li, Zhinan Liu, Sucheol Gil, Ashvin Bashyam, Evangelia Yannaki, Achilles Anagnostopoulos, Amit Pande, Zsuzsanna Izsvák, Thalia Papayannopoulou, André Lieber
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.ppat.1009175
Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response
Cited by: 5
Author(s): Qi Wang, Nadia Shakoor, Adam Boyher, Kira M. Veley, Jeffrey C. Berry, Todd C. Mockler, Rebecca Bart
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.ppat.1009138
Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
Cited by: 28
Author(s): Caoimhe E. O’Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A. B. Haase, Chris Todd Hittinger, Thomas R. Rogers, Óscar Zaragoza, Ursula Bond, Geraldine Butler
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.ppat.1009838
Probing the spatiotemporal patterns of HBV multiplication reveals novel features of its subcellular processes
Cited by: 10
Author(s): Lei Yue, Chang Li, Mingzhu Xu, Min Wu, Jiahui Ding, Jiangxia Liu, Xiaonan Zhang, Zhenghong Yuan
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.ppat.1009859
Metabolomics provide new insights into mechanisms of Wolbachia-induced paternal defects in Drosophila melanogaster
Cited by: 7
Author(s): Hua‐Bao Zhang, Zheng Cao, Jun-Xue Qiao, Zi-Qian Zhong, Chenchen Pan, Chen Liu, Limin Zhang, Yufeng Wang
Software Mentions: 3
Published: almost 5 years ago
10.5194/pb-7-41-2020
Testing lipid markers as predictors of all-cause morbidity, cardiac disease, and mortality risk in captive western lowland gorillas (&amp;lt;i&amp;gt;Gorilla gorilla gorilla&amp;lt;/i&amp;gt;)
Cited by: 3
Author(s): Ashley N. Edes, Janine L. Brown, Katie L. Edwards
Software Mentions: 3
Published: over 5 years ago
10.1098/rspb.2017.2116
Deep pelagic food web structure as revealed by <i>in situ</i> feeding observations
Cited by: 74
Author(s): C. Anela Choy, Steven H. D. Haddock, Bruce H. Robison
Software Mentions: 3
Published: over 8 years ago
10.1098/rspb.2019.1487
Optimizing future biodiversity sampling by citizen scientists
Cited by: 41
Author(s): Corey T. Callaghan, Alistair G. B. Poore, Richard E. Major, Jodi J. L. Rowley, William K. Cornwell
Software Mentions: 3
Published: over 6 years ago
10.1098/rspb.2021.0121
Dietary plasticity of North American herbivores: a synthesis of stable isotope data over the past 7 million years
Cited by: 5
Author(s): Melissa I. Pardi, Larisa R.G. DeSantis
Software Mentions: 3
Published: about 5 years ago
10.1073/pnas.1903485116
Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling
Cited by: 13
Author(s): Peter Kreuzaler, Malcolm Clarke, Elizabeth J. Brown, Catherine H. Wilson, Roderik M. Kortlever, Nir Piterman, Trevor D. Littlewood, Gérard I. Evan, Jasmin Fisher
Software Mentions: 3
Published: over 6 years ago
10.1073/pnas.2013554117
HLA tapasin independence: broader peptide repertoire and HIV control
Cited by: 46
Author(s): Arman Bashirova, Mathias Viard, Vivek Naranbhai, Alba Grifoni, Wilfredo F. García-Beltrán, Marjan Akdag, Yuko Yuki, Xiaojiang Gao, Colm Ó'hUigín, Malini Raghavan, Steven M. Wolinsky, Jay H. Bream, Priya Duggal, Jeremy Martinson, Nelson L. Michael, Gregory D. Kirk, Susan Buchbinder, David W. Haas, James J. Goedert, Steven G. Deeks, Jacques Fellay, Bruce D. Walker, Philip Goulder, Peter Cresswell, Tim Elliott, Alessandro Sette, Jonathan M. Carlson, Mary Carrington
Software Mentions: 3
Published: over 5 years ago
10.1073/pnas.2022702118
Photosynthesis-independent production of reactive oxygen species in the rice bundle sheath during high light is mediated by NADPH oxidase
Cited by: 24
Author(s): Haiyan Xiong, Lei Hua, Ivan Reyna-Llorens, Yi Shi, Kun-Ming Chen, Nicholas Smirnoff, Johannes Kromdijk, Julian M. Hibberd
Software Mentions: 3
Published: about 5 years ago
10.1073/pnas.2026289118
Dopaminergic brainstem disconnection is common to pharmacological and pathological consciousness perturbation
Cited by: 33
Author(s): Lennart R. B. Spindler, Andrea I. Luppi, R. Adapa, Michael Craig, Peter Coppola, Alexander R.D. Peattie, Anne Manktelow, Paola Finoia, Barbara J. Sahakian, Guy B. Williams, Judith Allanson, John D. Pickard, David Menon, Emmanuel A. Stamatakis
Software Mentions: 3
Published: almost 5 years ago
10.3390/proteomes5040031
Quantification of Cardiovascular Disease Biomarkers in Human Platelets by Targeted Mass Spectrometry
Cited by: 12
Author(s): Sebastian Malchow, Christina Looße, Albert Sickmann, Christin Lorenz
Software Mentions: 3
Published: over 8 years ago
10.3390/proteomes8030024
Profiling of Inflammatory Proteins in Plasma of HIV-1-Infected Children Receiving Antiretroviral Therapy
Cited by: 9
Author(s): Mahlet Lemma, Stefan Petkov, Yonas Bekele, Beyene Petros, Rawleigh Howe, Francesca Chiodi
Software Mentions: 3
Published: almost 6 years ago
10.3390/proteomes9020029
Mining Proteome Research Reports: A Bird’s Eye View
Cited by: 1
Author(s): Jagajjit Sahu
Software Mentions: 3
Published: about 5 years ago
10.1002/prca.202000012
Targeted Mass Spectrometry of a Clinically Relevant PSA Variant from Post‐DRE Urines for Quantitation and Genotype Determination
Cited by: 7
Author(s): Joseph J. Otto, Vanessa L Correll, Hampus A. Engstroem, Naomi L. Hitefield, Brian Main, Brenna Albracht, Teresa L. Johnson‐Pais, Yang Li, Michael A. Liss, Paul C. Boutros, Thomas Kislinger, Robin J. Leach, O. John Semmes, Julius O. Nyalwidhe
Software Mentions: 3
Published: almost 6 years ago
10.1017/S0033291721001434
Coronavirus conspiracy suspicions, general vaccine attitudes, trust and coronavirus information source as predictors of vaccine hesitancy among UK residents during the COVID-19 pandemic
Cited by: 142
Author(s): Daniel Allington, Siobhan McAndrew, Vivienne Moxham-Hall, Bobby Duffy
Software Mentions: 3
Published: about 5 years ago
10.1007/s00426-020-01392-3
Visual search in virtual 3D space: the relation of multiple targets and distractors
Cited by: 3
Author(s): Thorsten Plewan, Gerhard Rinkenauer
Software Mentions: 3
Published: over 5 years ago
10.1098/rsos.150519
Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems
Cited by: 11
Author(s): Michael A. Irvine, Emma L. Jackson, Emma J. Kenyon, Kevan J. Cook, Matthew James Keeling, James C. Bull
Software Mentions: 3
Published: over 10 years ago
10.1038/s41598-018-32314-4
Separation of blood microsamples by exploiting sedimentation at the microscale
Cited by: 22
Author(s): David Forchelet, Steve Béguin, Tatjana Sajic, Nasim Bararpour, Zoltan Pataky, Miguel Frias, Silke Grabherr, Marc Augsburger, Y. Liu, Mirren Charnley, Julien Déglon, Ruedi Aebersold, Aurélien Thomas, Philippe Renaud
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-018-32198-4
Experimental Adaptation of the Yellow Fever Virus to the Mosquito Aedes albopictus and Potential risk of urban epidemics in Brazil, South America
Cited by: 26
Author(s): Fadila Amraoui, Adrien Pain, Géraldine Piorkowski, Marie Vazeille, Dinair Couto-Lima, Xavier de Lamballerie, Ricardo Lourenço‐de‐Oliveira, Anna‐Bella Failloux
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-33433-8
Global pentapeptide statistics are far away from expected distributions
Cited by: 8
Author(s): Jarosław Poznański, Jan Topiński, Anna Muszewska, Konrad J. Dębski, Marta Hoffman-Sommer, Krzysztof Pawłowski, Marcin Grynberg
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-33750-y
Association of cervical microbial community with persistence, clearance and negativity of Human Papillomavirus in Korean women: a longitudinal study
Cited by: 30
Author(s): Selvaraj Arokiyaraj, Sang Soo Seo, Minji Kwon, Jae Kwan Lee, Mi Kyung Kim
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-34101-7
A striking new species of leaf warbler from the Lesser Sundas as uncovered through morphology and genomics
Cited by: 8
Author(s): Nathaniel S. R. Ng, Dewi M. Prawiradilaga, Elize Y. X. Ng, Suparno Suparno, Hidayat Ashari, Colin R. Trainor, Philippe Verbelen, Frank E. Rheindt
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-36125-5
Screening of 109 neuropeptides on ASICs reveals no direct agonists and dynorphin A, YFMRFamide and endomorphin-1 as modulators
Cited by: 17
Author(s): Anna Vyvers, Axel Schmidt, Dominik Wiemuth, Stefan Gründer
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-36877-0
Automated, high-throughput measurement of size and growth curves of small organisms in well plates
Cited by: 30
Author(s): James Duckworth, Tjalling Jager, Roman Ashauer
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-37442-5
Wnt/β-catenin signaling pathway safeguards epigenetic stability and homeostasis of mouse embryonic stem cells
Cited by: 28
Author(s): Ilda Theka, Francesco Sottile, Marco Cammisa, Sarah Bonnin, Marta Sánchez-Delgado, Umberto Di Vicino, Maria Victoria Neguembor, Karthik Arumugam, Francesco Aulicino, David Gabriel Monk, Andrea Riccio, María Pía Cosma
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-37447-0
Effects of roads on giant panda distribution: a mountain range scale evaluation
Cited by: 23
Author(s): Ke He, Qiang Dai, Xianghui Gu, Zejun Zhang, Jiang Zhou, Dunwu Qi, Xun Gu, Xiangdong Yang, Wen Zhang, Bohan Yang, Yang Zhang
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-39153-x
Cortisol predicts migration timing and success in both Atlantic salmon and sea trout kelts
Cited by: 24
Author(s): Kim Birnie‐Gauvin, Hugo Flávio, Martin Lykke Kristensen, Sarah E. Walton‐Rabideau, Steven J. Cooke, William G. Willmore, Anders Koed, Kim Aarestrup
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-37749-3
The effect of interventions on the transmission and spread of HIV in South Africa: a phylodynamic analysis
Cited by: 8
Author(s): Eduan Wilkinson, Dennis Maletich Junqueira, Richard Lessells, Susan Engelbrecht, Gert van Zyl, Túlio de Oliveira, Marco Salemi
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-39445-2
Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction
Cited by: 32
Author(s): Sarbashis Das, Christoffer Frisk, Maria Eriksson, Anna Walentinsson, Matthias Corbascio, Camilla Hage, Chanchal Kumar, Michaela Asp, Joakim Lundeberg, Eva Maret, Hans Persson, Cecilia Linde, Bengt Persson
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-40564-z
Decline of transmissible gastroenteritis virus and its complex evolutionary relationship with porcine respiratory coronavirus in the United States
Cited by: 38
Author(s): Fangzhou Chen, Todd P. Knutson, Stephanie Rossow, Linda J. Saif, Douglas Marthaler
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-40974-z
G-protein Gα13 functions as a cytoskeletal and mitochondrial regulator to restrain osteoclast function
Cited by: 11
Author(s): Shinichi Nakano, Kenzo Inoue, Cheng Xu, Zhonghao Deng, Viktoriya Syrovatkina, G. Vitone, Liang Zhao, Xin‐Yun Huang, Baohong Zhao
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-41680-6
Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding
Cited by: 39
Author(s): Margot Tragin, Daniel Vaulot
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-019-41882-y
Enrichment of periodontal pathogens from the biofilms of healthy adults
Cited by: 51
Author(s): Monika Naginyte, Thuy Do, Josephine L. Meade, Deirdre DeVine, Philip Marsh
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-019-43110-z
High-throughput sequencing reveals the diversity and community structure of rhizosphere fungi of Ferula Sinkiangensis at different soil depths
Cited by: 25
Author(s): Tao Zhang, Zhongke Wang, Xinhua Lv, Yang Li, Zhuang Li
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-019-42862-y
A longitudinal characterization of the Non-Cystic Fibrosis Bronchiectasis airway microbiome
Cited by: 29
Author(s): Taylor E Woo, Rachel Lim, Alya Heirali, Nicole Acosta, Harvey Rabin, Christopher H. Mody, Ranjani Somayaji, Michael G. Surette, Christopher D. Sibley, Douglas G. Storey, Michael D. Parkins
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-019-44409-7
Red muscle activity in bluegill sunfish Lepomis macrochirus during forward accelerations
Cited by: 14
Author(s): Margot A. B. Schwalbe, Alexandra Leigh Boden, Tyler N. Wise, Eric D. Tytell
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-019-44882-0
Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development
Cited by: 15
Author(s): Elo Madissoon, Anastasios Damdimopoulos, Shintaro Katayama, Kaarel Krjutškov, Elisabet Einarsdottir, Katariina Mamia, Bert De Groef, Outi Hovatta, Juha Kere, Pauliina Damdimopoulou
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-020-67487-4
Immune status, and not HIV infection or exposure, drives the development of the oral microbiota
Cited by: 14
Author(s): Modupe Coker, Emmanuel F. Mongodin, Samer S. El-Kamary, Paul Akhigbe, ON Obuekwe, AI Omoigberale, Patricia Langenberg, Cyril O. Enwonwu, Lauren E. Hittle, William A. Blattner, Manhattan Charurat
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-020-67114-2
Identification of key genes in ruptured atherosclerotic plaques by weighted gene correlation network analysis
Cited by: 16
Author(s): Biao Xu, Rui Li, Chunxia Huang, Binsheng He, Guangyi Li, Hong‐Shuo Sun, Zhong‐Ping Feng, Meihua Bao
Software Mentions: 3
Published: almost 6 years ago