Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README

Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.3389/fphys.2021.612494
Prediction of Mortality in Hemodialysis Patients Using Moving Multivariate Distance
Cited by: 5
Author(s): Mingxin Liu, Véronique Legault, Tamàs Fülöp, Anne‐Marie Côté, Dominique Gravel, F. Guillaume Blanchet, Diana Leung, Sylvia Juhong Lee, Yuichi Nakazato, Alan A. Cohen
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2020.589076
Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: over 5 years ago
10.1186/s12917-018-1762-z
Assessing the performance of a Fasciola gigantica serum antibody ELISA to estimate prevalence in cattle in Cameroon
Cited by: 9
Author(s): Robert F. Kelly, Stella Mazeri, Carol A. Hartley, Saidou M. Hamman, Victor Ngu Ngwa, Egbe Franklyn Nkongho, Vincent N. Tanya, Melissa Sander, Lucy Ndip, K. L. Morgan, Adrian Muwonge, Ian Handel, B. M. C. de Bronsvoort, Diana Williams
Software Mentions: 3
Published: over 7 years ago
10.3389/fphys.2021.688946
The Role of Innate Immunity and Bioactive Lipid Mediators in COVID-19 and Influenza
Cited by: 15
Author(s): Sabina Sahanic, Judith Löffler‐Ragg, Piotr Tymoszuk, Richard Hilbe, Egon Demetz, Rebecca Katharina Masanetz, Markus Theurl, Johannes Holfeld, Can Gollmann‐Tepeköylü, Alexandar Tzankov, Guenter Weiss, Martin Giera, Ivan Tancevski
Software Mentions: 3
Published: about 5 years ago
10.1186/s42523-021-00106-3
Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review
Cited by: 17
Author(s): Chian Teng Ong, Conny Turni, G. Boe-Hansen, B. J. Hayes, A.E. Lew-Tabor
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2019.00660
Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)
Cited by: 12
Author(s): Jian Xu, Yanliang Jiang, Zixia Zhao, Hanyuan Zhang, Wenzhu Peng, Jianxin Feng, Chuanju Dong, Baohua Chen, Ruyu Tai, Peng Xu
Software Mentions: 3
Published: about 7 years ago
10.3389/fphys.2020.00860
Residential Altitude Associates With Endurance but Not Muscle Power in Young Swiss Men
Cited by: 6
Author(s): N Gassmann, Katarina L. Matthes, Patrick Eppenberger, Marek Brabec, Radoslaw Panczak, Marcel Zwahlen, Nicole Bender, Thomas Wyss, Frank J Rühli, Kaspar Staub
Software Mentions: 3
Published: about 6 years ago
10.3389/fgene.2020.566928
A Five-Gene-Pair-Based Prognostic Signature for Predicting the Relapse Risk of Early Stage ER+ Breast Cancer
Cited by: 2
Author(s): Na Li, Hao Cai, Kai Song, You Guo, Qirui Liang, Jiahui Zhang, Rou Chen, Jing Li, Xianlong Wang, Zheng Guo
Software Mentions: 3
Published: almost 6 years ago
10.7554/eLife.67460
Combination of inflammatory and vascular markers in the febrile phase of dengue is associated with more severe outcomes
Cited by: 7
Author(s): Nguyen Lam Vuong, Phung Khanh Lam, Damien Ming, Huynh Thi Le Duyen, Nguyet Minh Nguyen, Dong Thi Hoai Tam, Kien Duong Thi Hue, Nguyen Vinh Chau, Ngoun Chanpheaktra, Lucy Chai See Lum, Ernesto Pleités, Cameron P. Simmons, Kerstin Rosenberger, Thomas Jaenisch, David A. Bell, Nathalie Acestor, Christine Halleux, Piero Olliaro, Bridget Wills, Ronald B. Geskus, Sophie Yacoub
Software Mentions: 3
Published: about 5 years ago
10.1186/s12894-021-00843-2
EPDR1 is related to stages and metastasize in bladder cancer and can be used as a prognostic biomarker
Cited by: 8
Author(s): Yue Yang, Hanchao Zhang, Zhengdao Liu, Faliang Zhao, Guobiao Liang
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2021.671585
Upregulation of LIMK1 Is Correlated With Poor Prognosis and Immune Infiltrates in Lung Adenocarcinoma
Cited by: 12
Author(s): Gui-Fu Lu, Ying Zhou, Chenxi Zhang, Yu Zhang
Software Mentions: 3
Published: about 5 years ago
10.1590/1413-785220162404158362
UNCEMENTED ARTHROPLASTY AFTER HIP METASTATIC DISEASE AND MULTIPLE MYELOMA
Cited by: 2
Author(s): André Mathias Baptista, Sergio Pinheiro de Souza Meirelles, Daniel César Seguel Rebolledo, Luiz Filipe Marques Correia, Olavo Pires de Camargo
Software Mentions: 3
Published: about 10 years ago
10.1186/s12893-021-01298-w
Identification of potential hub genes associated with skin wound healing based on time course bioinformatic analyses
Cited by: 2
Author(s): Hongtu Zhu, Meng Fan, Gao Wei
Software Mentions: 3
Published: about 5 years ago
10.3389/fphys.2020.608279
Protecting Intestinal Microenvironment Alleviates Acute Graft-Versus-Host Disease
Cited by: 5
Author(s): Zhengcan Zhou, Tao Shang, Xiurong Li, Hongyan Zhu, Yubo Qi, Xin Zhao, Xi Chen, Shi Z, Guixiang Pan, Yuefei Wang, Guanwei Fan, Xiumei Gao, Yan Zhu, Yi Feng
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2019.01635
Fermented Animal Source Protein as Substitution of Fishmeal on Intestinal Microbiota, Immune-Related Cytokines and Resistance to Vibrio mimicus in Freshwater Crayfish (Cherax cainii)
Cited by: 20
Author(s): Muhammad A.B. Siddik, Ravi Fotedar, Reaz Chaklader, Javed Foysal, Ashfaqun Nahar, Janet Howieson
Software Mentions: 3
Published: over 6 years ago
10.1186/s13104-018-3864-x
Transcriptomic evidence for distinct mechanisms underlying abscission deficiency in the Arabidopsis mutants haesa/haesa-like 2 and nevershed
Cited by: 6
Author(s): Isaiah Taylor, John C. Walker
Software Mentions: 3
Published: almost 8 years ago
10.1186/s42523-020-00068-y
Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
Cited by: 7
Author(s): Raphael Eisenhofer, Kristofer M. Helgen, David A. Taggart
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2021.621830
Identification of the Crucial Gene in Overflow Arteriovenous Fistula by Bioinformatics Analysis
Cited by: 3
Author(s): Zhengde Zhao, Qining Fu, Liangzhu Hu, Yangdong Liu
Software Mentions: 3
Published: about 5 years ago
10.1186/s12889-021-11483-4
Patterns of child mortality in rural area of Burkina Faso: evidence from the Nanoro health and demographic surveillance system (HDSS)
Cited by: 1
Author(s): Navideh Noori, Karim Derra, Innocent Valéa, Assaf P. Oron, Aminata Welgo, Toussaint Rouamba, Palwendé Romuald Boua, Athanase M. Somé, Eli Rouamba, E. A. Wenger, Hermann Sorgho, Halidou Tinto, André Lin Ouédraogo
Software Mentions: 3
Published: about 5 years ago
10.1186/s12870-020-02511-3
Identification of small RNAs during cold acclimation in Arabidopsis thaliana
Cited by: 21
Author(s): Bhavika Tiwari, Kristin Habermann, Muhammad Arif, Heinrich Lukas Weil, Antoni García-Molina, Tatjana Kleine, Timo Mühlhaus, Wolfgang Frank
Software Mentions: 3
Published: about 6 years ago
10.1186/s12870-021-03155-7
GWAS provides biological insights into mechanisms of the parasitic plant (Striga) resistance in sorghum
Cited by: 15
Author(s): Jacinta Kavuluko, Magdaline Kibe, Irine Sugut, Willy Kibet, Joel Masanga, Sylvia Mutinda, Mark Wamalwa, Titus Magomere, Damaris Achieng Odeny, Steven Runo
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2020.00922
Sperm DNA Hypomethylation Proximal to Reproduction Pathway Genes in Maturing Elite Norwegian Red Bulls
Cited by: 8
Author(s): Abdolrahman Khezri, Birgitte Narud, Else‐Berit Stenseth, Teklu Tewoldebrhan Zeremichael, Frøydis Deinboll Myromslien, Robert Wilson, Rafi Ahmad, Elisabeth Kommisrud
Software Mentions: 3
Published: about 6 years ago
10.1007/s10071-018-1220-0
Sight or smell: which senses do scavenging raptors use to find food?
Cited by: 16
Author(s): Simon Potier, Olivier Duriez, Aurélie Célérier, Jean Louis Liegeois, Francesco Bonadonna
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-020-71589-4
Towards personalized induction therapy for esophageal adenocarcinoma: organoids derived from endoscopic biopsy recapitulate the pre-treatment tumor
Cited by: 27
Author(s): Mathieu Derouet, Jonathan Allen, Gavin Wilson, Christine Ng, Nikolina Radulovich, Sangeetha Kalimuthu, Ming‐Sound Tsao, Gail Darling, Jonathan Yeung
Software Mentions: 3
Published: almost 6 years ago
10.1007/s10071-020-01410-2
Who turns to the human? Companion pigs’ and dogs’ behaviour in the unsolvable task paradigm
Cited by: 13
Author(s): Paula Pérez Fraga, László Gerencsér, Melinda Lovas, Dóra Újváry, Attila Andics
Software Mentions: 3
Published: about 6 years ago
10.1186/s12870-019-1755-5
Physiological responses of Lepidium meyenii plants to ultraviolet-B radiation challenge
Cited by: 11
Author(s): Thais Huarancca Reyes, Andrea Scartazza, Antonio Pompeiano, Lorenzo Guglielminetti
Software Mentions: 3
Published: over 7 years ago
10.3390/ijms22168792
Parallel Reporter Assays Identify Altered Regulatory Role of rs684232 in Leading to Prostate Cancer Predisposition
Cited by: 9
Author(s): Naixia Ren, Qingqing Liu, Lingjie Yan, Qilai Huang
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2018.00263
A Multilocus Approach to Understanding Historical and Contemporary Demography of the Keystone Floodplain Species Colossoma macropomum (Teleostei: Characiformes)
Cited by: 9
Author(s): Maria da Conceição Freitas Santos, Tomas Hrbek, Izeni Pires Farias
Software Mentions: 3
Published: about 8 years ago
10.1186/s12870-021-03197-x
Geographic distribution of the E1 family of genes and their effects on reproductive timing in soybean
Cited by: 5
Author(s): Nicholas Dietz, Rachel Combs-Giroir, Grace Cooper, Minviluz G. Stacey, Carrie Miranda, Kristin Bilyeu
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12870-018-1587-8
Interactive effects of multiple vernalization (Vrn-1)- and photoperiod (Ppd-1)-related genes on the growth habit of bread wheat and their association with heading and flowering time
Cited by: 10
Author(s): Shulin Chen, Junsen Wang, Genwang Deng, Long Chen, Xuejiao Cheng, Haixia Xu, Kai Zhan
Software Mentions: 3
Published: over 7 years ago
10.1186/s12870-020-2305-x
Linking crop traits to transcriptome differences in a progeny population of tetraploid potato
Cited by: 7
Author(s): Erik Alexandersson, Sandeep Kushwaha, Aastha Subedi, Deborah Weighill, Sharlee Climer, Daniel Jacobson, Erik Andréasson
Software Mentions: 3
Published: over 6 years ago
10.1186/s12870-020-02365-9
High abundance of Ralstonia solanacearum changed tomato rhizosphere microbiome and metabolome
Cited by: 33
Author(s): Teng Wen, Mingwen Zhao, Ting Liu, Qiwei Huang, Jun Yuan, Qirong Shen
Software Mentions: 3
Published: over 6 years ago
10.3390/ijms22179349
Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
Cited by: 16
Author(s): Nicole Rachinger, Stefan Fischer, Ines Böhme, Lisa Linck-Paulus, Silke Kuphal, Melanie Kappelmann‐Fenzl, Anja‐Katrin Bosserhoff
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12870-020-02604-z
Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study
Cited by: 20
Author(s): Benjamin Karikari, Zili Wang, Yefei Zhou, Wenliang Yan, Jiao Feng, Tuanjie Zhao
Software Mentions: 3
Published: almost 6 years ago
10.1155/2020/6827057
Development of a Ten-lncRNA Signature Prognostic Model for Breast Cancer Survival: A Study with the TCGA Database
Cited by: 11
Author(s): Wenqing Zhou, Yongkui Pang, Yunmin Yao, Huiying Qiao
Software Mentions: 3
Published: about 6 years ago
10.1186/s12864-017-3719-1
Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Cited by: 42
Author(s): Xiaochun Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Chen Yan, Huaming Xu, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Surong Shuai, Lin Bai, Haifeng Liu, Jideng Ma, Long Jin, Anxiang Wen, Qin Wang, Guangxiang Zhu, Meng Xie, Jiayun Wu, Tao He, Chunyu Huang, Xiang Gao, Xuewei Li
Software Mentions: 3
Published: over 9 years ago
10.1186/s12864-021-07900-y
LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data
Cited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: about 5 years ago
10.1186/s12864-019-5816-9
The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation
Cited by: 19
Author(s): Guilherme Costa Baião, Daniela Schneider, Wolfgang J. Miller, Lisa Klasson
Software Mentions: 3
Published: about 7 years ago
10.1186/s12870-021-02893-y
Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium
Cited by: 32
Author(s): Jiajia Zuo, Mengting Zu, Lei Liu, Xiaomei Song, Yingdan Yuan
Software Mentions: 3
Published: over 5 years ago
10.3390/ijms22189799
Identification of miR-199a-5p, miR-214-3p and miR-99b-5p as Fibrosis-Specific Extracellular Biomarkers and Promoters of HSC Activation
Cited by: 7
Author(s): Catherine Jane Messner, Saskia Schmidt, Dilek Özkul, Carine Gaiser, Luigi Terracciano, Stephan Krähenbühl, Laura Suter‐Dick
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12887-020-02344-x
Impact of congenital heart disease on outcomes among pediatric patients hospitalized for influenza infection
Cited by: 13
Author(s): Laxmi V. Ghimire, Fu‐Sheng Chou, Anita J. Moon-Grady
Software Mentions: 3
Published: almost 6 years ago
10.3390/ijms221810073
Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12903-020-01156-w
Association between periodontitis and all-cause and cancer mortality: retrospective elderly community cohort study
Cited by: 14
Author(s): Ping-Chen Chung, Ta‐Chien Chan
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2020.619968
Evidence for Proline Utilization by Oral Bacterial Biofilms Grown in Saliva
Cited by: 7
Author(s): Leanne Cleaver, Rebecca Moazzez, Guy Carpenter
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2020.00778
Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12903-021-01719-5
Core of the saliva microbiome: an analysis of the MG-RAST data
Cited by: 8
Author(s): Simone Santos Oliveira, Rafaela Rie Nishiyama, Claudio A C Trigo, Ana Luíza Mattos‐Guaraldi, Alberto M. R. Dávila, Rodrigo Desessards Jardim, Flávio Henrique Baggio Aguiar
Software Mentions: 3
Published: about 5 years ago
10.1186/1471-2415-13-40
Tear fluid proteomics multimarkers for diabetic retinopathy screening
Cited by: 46
Author(s): Zsuzsa Török, Tünde Pető, Éva Csősz, Edit Tukacs, Ágnes Molnár, Zsuzsanna Maros-Szabó, András Berta, József Tőzsér, András Hajdú, Valéria Nagy, Bálint Domokos, Adrienne Csutak
Software Mentions: 3
Published: about 13 years ago
10.1098/rspb.2021.0121
Dietary plasticity of North American herbivores: a synthesis of stable isotope data over the past 7 million years
Cited by: 5
Author(s): Melissa I. Pardi, Larisa R.G. DeSantis
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2021.631250
Adaptive Gene Content and Allele Distribution Variations in the Wild and Domesticated Populations of Saccharomyces cerevisiae
Cited by: 12
Author(s): Dayong Han, Pei‐Jie Han, Karl Rumbold, Anbessa Dabassa Koricha, Shoufu Duan, Liang Song, Junyan Shi, Kuan Li, Qiming Wang, Feng‐Yan Bai
Software Mentions: 3
Published: over 5 years ago
10.3390/ijms221910574
miR-29a-3p/THBS2 Axis Regulates PAH-Induced Cardiac Fibrosis
Cited by: 10
Author(s): Chao Kai Hsu, I-Fan Liu, Hsuan-Fu Kuo, Chia-Yang Li, Wei Lian, Chia Yuan Chang, Yung‐Hsiang Chen, Wei-Lun Liu, Chi‐Yu Lu, Yuru Liu, Tzu-Chieh Lin, Tsung-Ying Lee, Chi-Yuan Huang, Chong‐Chao Hsieh, Po-Len Liu
Software Mentions: 3
Published: almost 5 years ago
10.1098/rspb.2019.1487
Optimizing future biodiversity sampling by citizen scientists
Cited by: 41
Author(s): Corey T. Callaghan, Alistair G. B. Poore, Richard E. Major, Jodi J. L. Rowley, William K. Cornwell
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12883-018-1149-6
Comorbidity of migraine with ADHD in adults
Cited by: 24
Author(s): Thomas Folkmann Hansen, Louise K. Hoeffding, Lisette J. A. Kogelman, Thilde Marie Haspang, Henrik Ullum, Erik Sørensen, Christian Erikstrup, Ole Birger Pedersen, Kaspar René Nielsen, Henrik Hjalgrim, Helene M. Paarup, Thomas Werge, Kristoffer Sølvsten Burgdorf
Software Mentions: 3
Published: almost 8 years ago
10.1098/rspb.2017.2116
Deep pelagic food web structure as revealed by <i>in situ</i> feeding observations
Cited by: 74
Author(s): C. Anela Choy, Steven H. D. Haddock, Bruce H. Robison
Software Mentions: 3
Published: over 8 years ago
10.5194/pb-7-41-2020
Testing lipid markers as predictors of all-cause morbidity, cardiac disease, and mortality risk in captive western lowland gorillas (&amp;lt;i&amp;gt;Gorilla gorilla gorilla&amp;lt;/i&amp;gt;)
Cited by: 3
Author(s): Ashley N. Edes, Janine L. Brown, Katie L. Edwards
Software Mentions: 3
Published: over 5 years ago
10.1186/s12879-020-05091-7
Live poultry market closure and avian influenza A (H7N9) infection in cities of China, 2013–2017: an ecological study
Cited by: 6
Author(s): Ying Chen, Jian Cheng, Zhiwei Xu, Wenbiao Hu, Jiahai Lu
Software Mentions: 3
Published: about 6 years ago
10.1007/s00216-019-01976-y
Quantification of nitroaromatic explosives in contaminated soil using MALDI-TOF mass spectrometry
Cited by: 11
Author(s): Susan Kober, Henner Hollert, Marcus Frohme
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.ppat.1009859
Metabolomics provide new insights into mechanisms of Wolbachia-induced paternal defects in Drosophila melanogaster
Cited by: 7
Author(s): Hua‐Bao Zhang, Zheng Cao, Jun-Xue Qiao, Zi-Qian Zhong, Chenchen Pan, Chen Liu, Limin Zhang, Yufeng Wang
Software Mentions: 3
Published: about 5 years ago
10.1186/s13568-017-0444-8
The role of inorganic nitrogen in successful formation of granular biofilms for wastewater treatment that support cyanobacteria and bacteria
Cited by: 45
Author(s): Kristie Stauch-White, V. Srinivasan, Wenye Camilla Kuo-Dahab, Chul Park, Caitlyn S. Butler
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.ppat.1009838
Probing the spatiotemporal patterns of HBV multiplication reveals novel features of its subcellular processes
Cited by: 10
Author(s): Lei Yue, Chang Li, Mingzhu Xu, Min Wu, Jiahui Ding, Jiangxia Liu, Xiaonan Zhang, Zhenghong Yuan
Software Mentions: 3
Published: about 5 years ago
10.1186/s12882-020-01828-3
The association between serum chloride levels and chronic kidney disease progression: a cohort study
Cited by: 13
Author(s): Minesh Khatri, Joshua P. Zitovsky, Dale Lee, Kamal Nayyar, Melissa Fazzari, Candace D. Grant
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.ppat.1009138
Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
Cited by: 28
Author(s): Caoimhe E. O’Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A. B. Haase, Chris Todd Hittinger, Thomas R. Rogers, Óscar Zaragoza, Ursula Bond, Geraldine Butler
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2017.01008
Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants
Cited by: 44
Author(s): Christopher J. Stewart, Nicholas D. Embleton, Elizabeth Clements, Pamela N. Luna, Daniel P. Smith, Tatiana Fofanova, Andrew Nelson, Gillian Taylor, Caroline Orr, Joseph F. Petrosino, Janet Berrington, Stephen Cummings
Software Mentions: 3
Published: about 9 years ago
10.1128/JVI.01787-20
Vaccines That Reduce Viral Shedding Do Not Prevent Transmission of H1N1 Pandemic 2009 Swine Influenza A Virus Infection to Unvaccinated Pigs
Cited by: 7
Author(s): Helen Everett, Pauline M. van Diemen, Mario Aramouni, Andrew Ramsay, Vivien Coward, Vincent Pavot, Laetitia Canini, Barbara Holzer, Sophie Morgan, Mark Woolhouse, Elma Tchilian, Sharon M Brookes, Ian H. Brown, Bryan Charleston, Sarah C. Gilbert
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2020.567312
Altered Cardiac Autonomic Regulation in Overweight and Obese Subjects: The Role of Age-and-Gender-Adjusted Statistical Indicators of Heart Rate Variability and Cardiac Baroreflex
Cited by: 6
Author(s): Nadia Solaro, Massimo Pagani, Daniela Lucini
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.ppat.1009175
Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response
Cited by: 5
Author(s): Qi Wang, Nadia Shakoor, Adam Boyher, Kira M. Veley, Jeffrey C. Berry, Todd C. Mockler, Rebecca Bart
Software Mentions: 3
Published: over 5 years ago
10.1186/s12891-017-1791-y
Co-expression of 1α-hydroxylase and vitamin D receptor in human articular chondrocytes
Cited by: 10
Author(s): Ann Kristin Hansen, Yngve Figenschau, Inigo Zubiaurre-Martinez
Software Mentions: 3
Published: almost 9 years ago
10.3389/fgene.2019.00752
Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress–Responsive Pathways in Microalga Dunaliella
Cited by: 39
Author(s): Bahman Panahi, Mohammad Frahadian, Jacob T. Dums, Mohammad Amin Hejazi
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.ppat.1008216
Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease
Cited by: 52
Author(s): Justine Charon, Matthew J. Grigg, John Sebastian Eden, Kim A. Piera, Hafsa Rana, Timothy William, Karrie Rose, Miles P. Davenport, Nicholas M. Anstey, Edward C. Holmes
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.ppat.1007626
A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema
Cited by: 52
Author(s): Dennis Chang, Lorrayne Serra, Dihong Lu, A Mortazavi, Adler R. Dillman
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2021.619056
Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2020.618144
Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers
Cited by: 37
Author(s): Dong Dai, Kai Qiu, Haijun Zhang, Shu‐geng Wu, Yanming Han, Yuanyuan Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2021.630417
Prognostic and Immunological Role of mRNA ac4C Regulator NAT10 in Pan-Cancer: New Territory for Cancer Research?
Cited by: 19
Author(s): Chuanxi Yang, Tingting Wu, Jing Zhang, Jinhui Liu, Kun Zhao, Wei Sun, Xin Zhou, Xiangqing Kong, Jing Shi
Software Mentions: 3
Published: over 5 years ago
10.2196/27132
Proof-of-Concept Support for the Development and Implementation of a Digital Assessment for Perinatal Mental Health: Mixed Methods Study
Cited by: 10
Author(s): Nayra A Martin-Key, Benedetta Spadaro, Thea Schei, Sabine Bahn
Software Mentions: 3
Published: about 5 years ago
10.1073/pnas.1903485116
Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling
Cited by: 13
Author(s): Peter Kreuzaler, Malcolm Clarke, Elizabeth J. Brown, Catherine H. Wilson, Roderik M. Kortlever, Nir Piterman, Trevor D. Littlewood, Gérard I. Evan, Jasmin Fisher
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.ppat.1005576
Transformed Recombinant Enrichment Profiling Rapidly Identifies HMW1 as an Intracellular Invasion Locus in Haemophilus influenzae
Cited by: 15
Author(s): Joshua Chang Mell, Cristina Viadas, Javier Moleres, Sunita Sinha, Ariadna Fernández-Calvet, Eric A. Porsch, Joseph W. St. Geme, Corey Nislow, Rosemary J. Redfield, Junkal Garmendia
Software Mentions: 3
Published: over 10 years ago
10.1073/pnas.2013554117
HLA tapasin independence: broader peptide repertoire and HIV control
Cited by: 46
Author(s): Arman Bashirova, Mathias Viard, Vivek Naranbhai, Alba Grifoni, Wilfredo F. García-Beltrán, Marjan Akdag, Yuko Yuki, Xiaojiang Gao, Colm Ó'hUigín, Malini Raghavan, Steven M. Wolinsky, Jay H. Bream, Priya Duggal, Jeremy Martinson, Nelson L. Michael, Gregory D. Kirk, Susan Buchbinder, David W. Haas, James J. Goedert, Steven G. Deeks, Jacques Fellay, Bruce D. Walker, Philip Goulder, Peter Cresswell, Tim Elliott, Alessandro Sette, Jonathan M. Carlson, Mary Carrington
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.ppat.1005273
Plasmodium P-Type Cyclin CYC3 Modulates Endomitotic Growth during Oocyst Development in Mosquitoes
Cited by: 60
Author(s): Magali Roques, Richard J. Wall, Alexander P. Douglass, Abhinay Ramaprasad, David Ferguson, Mbinda L. Kaindama, Lorenzo Brusini, Joshi Nimitray, Zineb Rchiad, Declan Brady, David S. Guttery, Sally P. Wheatley, Hiroyuki Yamano, Anthony A. Holder, Arnab Pain, Bill Wickstead, Rita Tewari
Software Mentions: 3
Published: almost 11 years ago
10.1186/s12866-019-1548-x
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Cited by: 24
Author(s): Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron Read, Tim A. McAllister
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12864-017-4316-z
Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia
Cited by: 25
Author(s): Hiroki Takahashi, Yoko Kusuya, Daisuke Hagiwara, Azusa Takahashi‐Nakaguchi, Kanae Sakai, Tohru Gonoi
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.ppat.1004809
Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses
Cited by: 94
Author(s): Benjamin Schwessinger, Ofir Bahar, Nicholas Thomas, Nicholas Holton, Vladimir Nekrasov, Deling Ruan, Patrick E. Canlas, Arsalan Daudi, Young-Mo Kim, Vasanth Singan, Rita C. Kuo, Mansi Chovatia, Christopher Daum, Joshua L. Heazlewood, Cyril Zipfel, Pamela C. Ronald
Software Mentions: 3
Published: over 11 years ago
10.3389/fonc.2020.606765
KIF21B Expression in Osteosarcoma and Its Regulatory Effect on Osteosarcoma Cell Proliferation and Apoptosis Through the PI3K/AKT Pathway
Cited by: 7
Author(s): Songjia Ni, Jianjun Li, Sujun Qiu, Yingming Xie, Kaiqin Gong, Yang Duan
Software Mentions: 3
Published: over 5 years ago
10.1073/pnas.2022702118
Photosynthesis-independent production of reactive oxygen species in the rice bundle sheath during high light is mediated by NADPH oxidase
Cited by: 24
Author(s): Haiyan Xiong, Lei Hua, Ivan Reyna-Llorens, Yi Shi, Kun-Ming Chen, Nicholas Smirnoff, Johannes Kromdijk, Julian M. Hibberd
Software Mentions: 3
Published: about 5 years ago
10.3389/fonc.2020.01775
Cultivation of Clear Cell Renal Cell Carcinoma Patient-Derived Organoids in an Air-Liquid Interface System as a Tool for Studying Individualized Therapy
Cited by: 23
Author(s): Laura Kristin Esser, Vittorio Branchi, Sonia Leonardelli, Natalie Pelusi, Adolfo Simón, Niklas Klümper, Jörg Ellinger, Stefan Hauser, Maria A. Gonzalez‐Carmona, Manuel Ritter, Glen Kristiansen, Hubert Schorle, Michael Hölzel, Marieta Toma
Software Mentions: 3
Published: almost 6 years ago
10.1073/pnas.2026289118
Dopaminergic brainstem disconnection is common to pharmacological and pathological consciousness perturbation
Cited by: 33
Author(s): Lennart R. B. Spindler, Andrea I. Luppi, R. Adapa, Michael Craig, Peter Coppola, Alexander R.D. Peattie, Anne Manktelow, Paola Finoia, Barbara J. Sahakian, Guy B. Williams, Judith Allanson, John D. Pickard, David Menon, Emmanuel A. Stamatakis
Software Mentions: 3
Published: about 5 years ago
10.3389/fonc.2020.605737
A Novel Four-Gene Signature Associated With Immune Checkpoint for Predicting Prognosis in Lower-Grade Glioma
Cited by: 12
Author(s): Youchao Xiao, Gang Cui, Xingguang Ren, Jiaqi Hao, Yu Zhang, Xin Yang, Zhuangzhuang Wang, Xiaolin Zhu, Huan Wang, Chunyan Hao, Hubin Duan
Software Mentions: 3
Published: almost 6 years ago
10.3389/fonc.2020.553628
Up-regulation of L Antigen Family Member 3 Associates With Aggressive Progression of Breast Cancer
Cited by: 3
Author(s): Xubin Dong, Shihui Lv, Di Gu, Xiaohua Zhang, Zhiqiang Ye
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2018.00128
Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession
Cited by: 53
Author(s): Joseph E. Knelman, Emily B. Graham, Janet S. Prevéy, Michael S. Robeson, Patrick H. Kelly, Eran Hood, Steven K. Schmidt
Software Mentions: 3
Published: over 8 years ago
10.1093/jxb/eraa123
Pre-akinete formation in Zygnema sp. from polar habitats is associated with metabolite re-arrangement
Cited by: 18
Author(s): Erwann Arc, Martina Pichrtová, Ilse Kranner, Andreas Holzinger
Software Mentions: 3
Published: over 6 years ago
10.3390/proteomes5040031
Quantification of Cardiovascular Disease Biomarkers in Human Platelets by Targeted Mass Spectrometry
Cited by: 12
Author(s): Sebastian Malchow, Christina Looße, Albert Sickmann, Christin Lorenz
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2019.00531
Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
Cited by: 25
Author(s): Fernando Astudillo-Melgar, Adrián Ochoa-Leyva, José Utrilla, Gerardo Huerta-Beristain
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2021.740167
Ancient Mitochondrial Genomes Reveal Extensive Genetic Influence of the Steppe Pastoralists in Western Xinjiang
Cited by: 6
Author(s): Chao Ning, Hou-Feng Zheng, Fan Zhang, Sihao Wu, Chunxiang Li, Yunlong Zhao, Yang Xu, Dong Wei, Yong Wu, Shizhu Gao, Jin Li, Yinqiu Cui
Software Mentions: 3
Published: almost 5 years ago
10.1093/jxb/erx349
Transfer of a starch phenotype from wild wheat to bread wheat by deletion of a locus controlling B-type starch granule content
Cited by: 21
Author(s): Tansy Chia, Nikolai M Adamski, Benedetta Saccomanno, Andrew J. Greenland, Alastair Nash, Cristóbal Uauy, Kay Trafford
Software Mentions: 3
Published: almost 9 years ago
10.1093/jxb/erw003
Leaf Length Tracker: a novel approach to analyse leaf elongation close to the thermal limit of growth in the field
Cited by: 29
Author(s): Sebastian Nagelmüller, Norbert Kirchgeßner, Steven Yates, Maya Hiltpold, Achim Walter
Software Mentions: 3
Published: over 10 years ago
10.3390/proteomes8030024
Profiling of Inflammatory Proteins in Plasma of HIV-1-Infected Children Receiving Antiretroviral Therapy
Cited by: 9
Author(s): Mahlet Lemma, Stefan Petkov, Yonas Bekele, Beyene Petros, Rawleigh Howe, Francesca Chiodi
Software Mentions: 3
Published: almost 6 years ago
10.1093/jxb/erv074
Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress
Cited by: 144
Author(s): Larry M. York, Tania Galindo-Castañeda, Jeffrey R. Schussler, Jonathan P. Lynch
Software Mentions: 3
Published: over 11 years ago
10.1242/jeb.233403
Early developmental stages of native populations of <i>Ciona intestinalis</i> under increased temperature are affected by local habitat history
Cited by: 4
Author(s): Elizabeth A. Clutton, Gastón Alurralde, Tiago Repolho
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2021.651350
The Landscape of Microbial Composition and Associated Factors in Pancreatic Ductal Adenocarcinoma Using RNA-Seq Data
Cited by: 3
Author(s): Dong Yu, Tengjiao Wang, Dong Liang, Mei Yue, Wenbin Zou, Shiwei Guo
Software Mentions: 3
Published: about 5 years ago
10.3390/proteomes9020029
Mining Proteome Research Reports: A Bird’s Eye View
Cited by: 1
Author(s): Jagajjit Sahu
Software Mentions: 3
Published: about 5 years ago
10.1093/jee/toz346
Comparing Prophylactic Versus Threshold-Based Insecticide Programs for Striped Cucumber Beetle (Coleoptera: Chrysomelidae) Management in Watermelon
Cited by: 13
Author(s): John J Ternest, Laura L. Ingwell, R. E. Foster, Ian Kaplan
Software Mentions: 3
Published: over 6 years ago
10.3389/fgene.2019.01215
Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago