cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/s19214634

Monitoring Water‐Soil Dynamics and Tree Survival Using Soil Sensors under a Big Data Approach
Cited by: 5
Author(s): Adrián Pascual, Rafael Rivera, Rodrigo Villalva Gomez, Susana Domínguez-Lerena
Software Mentions: 3
Published: over 6 years ago

10.3390/s20041096

A Review of Data Analytic Applications in Road Traffic Safety. Part 2: Prescriptive Modeling
Cited by: 14
Author(s): Qiong Hu, Miao Cai, Nasrin Mohabbati-Kalejahi, Amir Mehdizadeh, Mohammad Ali Alamdar Yazdi, Alexander Vinel, Steven E. Rigdon, Karen Davis, Fadel M. Megahed
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1005122

SERPINB11 Frameshift Variant Associated with Novel Hoof Specific Phenotype in Connemara Ponies
Cited by: 22
Author(s): Carrie J. Finno, Carlynn Stevens, Amy Young, Verena K. Affolter, Nikhil Joshi, Sheila Ramsay, Danika L. Bannasch
Software Mentions: 3
Published: about 11 years ago

10.1186/s13578-019-0356-1

Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma
Cited by: 42
Author(s): Xiao Zhu, Hui Luo, Ying Xu
Software Mentions: 3
Published: over 6 years ago

10.1186/s13578-021-00651-z

Incident disease associations with mosaic chromosomal alterations on autosomes, X and Y chromosomes: insights from a phenome-wide association study in the UK Biobank
Cited by: 11
Author(s): Shu-Hong Lin, Derek Brown, Birgit Rose, Felix R. Day, Olivia W. Lee, Seema Khan, Jada Hislop, Stephen J. Chanock, John R. B. Perry, Mitchell J. Machiela
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13578-021-00546-z

Alterations of RNA splicing patterns in esophagus squamous cell carcinoma
Cited by: 10
Author(s): Jiyu Ding, Chunquan Li, Yin-Wei Cheng, Zhifeng Du, Qiuyu Wang, Zhidong Tang, Chao Song, Qiaoxi Xia, Wenjing Bai, Gang Li, Wei Liu, Li‐Yan Xu, En‐Min Li, Bingli Wu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-79206-0

Soil fungal and bacterial communities in southern boreal forests of the Greater Khingan Mountains and their relationship with soil properties
Cited by: 11
Author(s): Thi‐Minh‐Dien Vuong, Jianyong Zeng, Xiuling Man
Software Mentions: 3
Published: over 5 years ago

10.1186/s12964-019-0332-8

Low levels of pyruvate induced by a positive feedback loop protects cholangiocarcinoma cells from apoptosis
Cited by: 12
Author(s): Mingming Zhang, Yida Pan, Dehua Tang, Robert Dorfman, Lei Xu, Qian Zhou, Lixing Zhou, Yuming Wang, Li Yang, Yuyao Yin, Bo Kong, Helmut Frieß, Shimin Zhao, Jian‐Lin Wu, Lei Wang, Xiaoping Zou
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2021.664148

Genomic Prediction of Grain Yield in a Barley MAGIC Population Modeling Genotype per Environment Interaction
Cited by: 5
Author(s): Damiano Puglisi, Stefano Delbono, Andrea Visioni, Hakan Özkan, İbrahim Kara, Ana M. Casas, Ernesto Igartua, Giampiero Valè, Angela Roberta Lo Piero, L. Cattivelli, Alessandro Tondelli, Agostino Fricano
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: over 8 years ago

10.1186/s12964-019-0336-4

Autocrine motility factor promotes endometrial cancer progression by targeting GPER-1
Cited by: 22
Author(s): Yiran Li, Yuanhui Jia, Yiding Bian, Huan Tong, Junjie Qu, Kai Wang, Xiaoping Wan
Software Mentions: 3
Published: over 7 years ago

10.3390/s21030924

Validation of Real-Time Kinematic (RTK) Devices on Sheep to Detect Grazing Movement Leaders and Social Networks in Merino Ewes
Cited by: 8
Author(s): Hamideh Keshavarzi, Lee C, Mark E. Johnson, David Abbott, Wei Ni, Dennis Campbell
Software Mentions: 3
Published: over 5 years ago

10.3390/s21124074

An Evaluation of the Factors Affecting ‘Poacher’ Detection with Drones and the Efficacy of Machine-Learning for Detection
Cited by: 6
Author(s): Katie E. Doull, Carl Chalmers, Paul Fergus, S. Longmore, Alex K. Piel, Serge A. Wich
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008083

The dPix-Git complex is essential to coordinate epithelial morphogenesis and regulate myosin during Drosophila egg chamber development
Cited by: 6
Author(s): Lucas Dent, Samuel A. Manning, Benjamin Kroeger, Audrey Miller Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne‐Badovinac, Kieran F. Harvey
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2021.724042

Transcriptomic Profile of Mycobacterium smegmatis in Response to an Imidazo[1,2-b][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism
Cited by: 0
Author(s): Aleksey A. Vatlin, Egor Shitikov, Mohd Shahbaaz, Dmitry Bespiatykh, Ksenia M. Klimina, Alan Christoffels, В. Н. Даниленко, Д. А. Маслов
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41419-019-1892-7

Epigenetic re-wiring of breast cancer by pharmacological targeting of C-terminal binding protein
Cited by: 7
Author(s): Jung S. Byun, Samson Park, Dae Ik Yi, Jee-Hye Shin, Sara Gil Hernandez, Stephen M. Hewitt, Marc C. Nicklaus, Megan L. Peach, Laura Guasch, Binwu Tang, Lalage M. Wakefield, Tingfen Yan, Ambar Caban, Alana Jones, Mohamed Kabbout, Nasreen A. Vohra, Anna María Nápoles, Sandeep K. Singhal, Ryan Yancey, Adriana De Siervi, Kevin Gardner
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41419-020-02963-3

EZH2 reduction is an essential mechanoresponse for the maintenance of super-enhancer polarization against compressive stress in human periodontal ligament stem cells
Cited by: 9
Author(s): Qian Li, Xiwen Sun, Yunyi Tang, Yanan Qu, Yanheng Zhou, Yu Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1006620

Mutations in mitochondrial DNA causing tubulointerstitial kidney disease
Cited by: 47
Author(s): Thomas M. Connor, Simon Hoer, Andrew Mallett, Daniel P. Gale, Aurora Gómez-Durán, Viktor Posse, Robin Antrobus, Pablo Moreno, Marco Sciacovelli, Christian Frezza, Jennifer Duff, Neil Sheerin, John A. Sayer, Margaret Ashcroft, Michael S. Wiesener, Gavin Hudson, Claes M. Gustafsson, Patrick F. Chinnery, Patrick H. Maxwell
Software Mentions: 3
Published: over 9 years ago

10.1128/AEM.01007-19

Vibrio parahaemolyticus in the Chesapeake Bay: Operational <i>In Situ</i> Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements
Cited by: 12
Author(s): Benjamin J. K. Davis, John M. Jacobs, Benjamin F. Zaitchik, Angelo DePaola, Frank C. Curriero
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pgen.1008603

Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence
Cited by: 5
Author(s): Tina Wagner, Lara Pérez-Martínez, René Schellhaas, Marta Barrientos-Moreno, Merve Öztürk, Félix Prado, Falk Butter, Brian Luke
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-29725-8

Fast Maximum Likelihood Estimation via Equilibrium Expectation for Large Network Data
Cited by: 20
Author(s): Maksym Byshkin, Alex Stivala, Antonietta Mira, Garry Robins, Alessandro Lomi
Software Mentions: 3
Published: almost 8 years ago

10.1007/s00127-016-1310-8

Incidence of schizophrenia among migrants in the Netherlands: a direct comparison of first contact longitudinal register approaches
Cited by: 15
Author(s): Simon J. Hogerzeil, Albert M. van Hemert, Wim Veling, Hans W. Hoek
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2021.709666

Establishment of an Endocytosis-Related Prognostic Signature for Patients With Low-Grade Glioma
Cited by: 4
Author(s): Dawei Wang, Shiguang Liu, Guangxin Wang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41419-020-02766-6

Deficiency of microRNA-628-5p promotes the progression of gastric cancer by upregulating PIN1
Cited by: 8
Author(s): Yang Chen, Yaran Wu, Shichong Yu, Hyejin Yang, Xiya Wang, Yali Zhang, Shunqin Zhu, Meng-Meng Jie, Cheng Liu, Xinzhe Li, You Zhou, Shi–Ming Yang, Yanwen Yang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.01292

Water Deficits Do Not Improve Fruit Quality in Grapevine Red Blotch Virus-Infected Grapevines (Vitis vinifera L.)
Cited by: 7
Author(s): A. D. Levin, Achala N. Kc
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007829

Improving the coverage of credible sets in Bayesian genetic fine-mapping
Cited by: 30
Author(s): Anna Hutchinson, Hope Watson, Chris Wallace
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1006455

Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells
Cited by: 4
Author(s): Ernest Ho, Juan Nicolas Malagon, Abha Ahuja, Rama S. Singh, Ellen Larsen
Software Mentions: 3
Published: over 7 years ago

10.1038/s41419-021-03955-7

LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Cited by: 22
Author(s): Renbo Guo, Benkui Zou, Yiran Liang, Jiasheng Bian, Jian Xu, Qian Zhou, Chao Zhang, Tao Chen, Mei Yang, Huansheng Wang, Fajun Pei, Zhonghua Xu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-78402-2

SARS-CoV-2 receptor ACE2 is co-expressed with genes related to transmembrane serine proteases, viral entry, immunity and cellular stress
Cited by: 29
Author(s): Wasco Wruck, James Adjaye
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-78222-4

Exploration of a novel virtual environment improves memory consolidation in ADHD
Cited by: 14
Author(s): Valentin Baumann, Thomas Birnbaum, Carolin Breitling-Ziegler, Jana Tegelbeckers, Johannes Dambacher, Elke Edelmann, Jorge R. Bergado-Acosta, Hans‐Henning Flechtner, Kerstin Krauel
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.607226

Nitrogen Use Efficiency in Durum Wheat Under Different Nitrogen and Water Regimes in the Mediterranean Basin
Cited by: 13
Author(s): Antonio Lupini, Giovanni Preiti, Giuseppe Badagliacca, Maria Rosa Abenavoli, Francesco Sunseri, Michele Monti, Monica Bacchi
Software Mentions: 3
Published: over 5 years ago

10.1002/sim.6788

Fractional Brownian motion and multivariate‐t models for longitudinal biomedical data, with application to CD4 counts in HIV‐positive patients
Cited by: 13
Author(s): Oliver Stirrup, Abdel Babiker, James Carpenter, Andrew Copas
Software Mentions: 3
Published: over 10 years ago

10.1038/s41419-021-04143-3

Pyroptosis inhibition improves the symptom of acute myocardial infarction
Cited by: 26
Author(s): Wenju Liu, Junwei Shen, Yanfei Li, Jiawen Wu, Xiaofeng Luo, Yuanyuan Yu, Yuhan Zhang, Liang Gu, Xiaobai Zhang, Cizhong Jiang, Jue Li
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-020-3411-3

Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data
Cited by: 17
Author(s): Guang‐Hui Fu, Yuan-Jiao Wu, Min-Jie Zong, Jianxin Pan
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.25572

Transcriptome profiling of anti-müllerian hormone treated preantral/small antral mouse ovary follicles
Cited by: 2
Author(s): Zia Ur Rehman, Faheem Ahmed Khan, Farmanullah, Hira Sajjad Talpur, Qing Liu, Shenhe Liu, Liguo Yang
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41419-020-2736-1

Aberrantly expressed HORMAD1 disrupts nuclear localization of MCM8–MCM9 complex and compromises DNA mismatch repair in cancer cells
Cited by: 27
Author(s): Kang Liu, Yifan Wang, Quanfeng Zhu, Peng Li, Jiyuan Chen, Zhenghui Tang, Yuanming Shen, Xiaodong Cheng, Lin-Yu Lu, Yidan Liu
Software Mentions: 3
Published: almost 6 years ago

10.1177/0962280220958438

Sample size and sample composition for constructing growth reference centiles
Cited by: 23
Author(s): Tim J. Cole
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007892

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans
Cited by: 2
Author(s): Chadi M. Saad-Roy, Nimalan Arinaminpathy, Ned S. Wingreen, Simon A. Levin, Joshua M. Akey, Bryan T. Grenfell
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13287-019-1376-9

Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation
Cited by: 23
Author(s): Anton Selich, Katharina Zimmermann, Michel Tenspolde, Oliver Dittrich‐Breiholz, Constantin von Kaisenberg, Axel Schambach, Michael Rothe
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41419-019-1570-9

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition
Cited by: 30
Author(s): Nunzio Del Gaudio, Antonella Di Costanzo, Ning Qing Liu, Lidio Conte, Antimo Migliaccio, Michiel Vermeulen, Joost H.A. Martens, Hendrik G. Stunnenberg, Angela Nebbioso, Lucia Altucci
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2020.503256

Construction and Analysis of a ceRNA Network in Cardiac Fibroblast During Fibrosis Based on in vivo and in vitro Data
Cited by: 7
Author(s): Qingyuan Gao, Haifeng Zhang, Zhi-Teng Chen, Yuewei Li, Shaohua Wang, Zheng Wen, Yong Xie, Jing-Ting Mai, Jingfeng Wang, Yangxin Chen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1003733

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets
Cited by: 23
Author(s): Alejandro Barrera, Ana Alastruey‐Izquierdo, Marı́a Jesús Martı́n, Isabel Cuesta, Juan Antonio Vizcaíno
Software Mentions: 3
Published: almost 12 years ago

10.1186/s13287-020-01619-5

Genetic barcoding reveals clonal dominance in iPSC-derived mesenchymal stromal cells
Cited by: 12
Author(s): Jonathan Hollmann, Johanna Brecht, Roman Goetzke, Julia Franzen, Anton Selich, Marco F. Schmidt, Monika Eipel, Alina Ostrowska, Jan Hapala, Eduardo Fernández-Rebollo, Gerhard Müller‐Newen, Michael Rothe, Thomas Eggermann, Martin Zenke, Wolfgang Wagner
Software Mentions: 3
Published: over 6 years ago

10.1038/s41419-020-02769-3

LEF1 mediates osteoarthritis progression through circRNF121/miR-665/MYD88 axis via NF-кB signaling pathway
Cited by: 31
Author(s): Tianfu Wang, Zhiyu Hao, Changcheng Liu, Lebin Yuan, Li Li, Menghong Yin, Qing Li, Zhiming Qi, Zi Wang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-018-1042-7

A new signaling cascade linking BMP4, BMPR1A, ΔNp73 and NANOG impacts on stem-like human cell properties and patient outcome
Cited by: 23
Author(s): Thibault Voeltzel, Mario Flores-Violante, Florence Zylbersztejn, Sylvain Lefort, Marion Billandon, Sandrine Jeanpierre, Stéphane Joly, Gaëlle Fossard, Milen Milenkov, Frédéric Mazurier, Ali Nehme, Amine Belhabri, Étienne Paubelle, Xavier Thomas, Mauricette Michallet, Fawzia Louache, Franck‐Emmanuel Nicolini, Claude Caron de Fromentel, Véronique Maguer-Satta
Software Mentions: 3
Published: over 7 years ago

10.1038/s41419-020-03181-7

Calcium and TRPV4 promote metastasis by regulating cytoskeleton through the RhoA/ROCK1 pathway in endometrial cancer
Cited by: 53
Author(s): Xingchen Li, Yuan Cheng, Zhiqi Wang, Jingyi Zhou, Yuanyuan Jia, Xijing He, Lijun Zhao, Yangyang Dong, Fan Yuan, Xiao Yang, Boqiang Shen, Xiangsong Wu, Jiaqi Wang, Chunyang Xiong, Lihui Wei
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pbio.3001108

Tooth morphology elucidates shark evolution across the end-Cretaceous mass extinction
Cited by: 6
Author(s): Mohamad Bazzi, Nicolás E. Campione, Per Ahlberg, Henning Blom, Benjamin P. Kear
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41420-021-00576-z

Identification of a prognostic ferroptosis-related lncRNA signature in the tumor microenvironment of lung adenocarcinoma
Cited by: 58
Author(s): Yugang Guo, Zhipeng Qu, Dandan Li, Fanghui Bai, Juan Xing, Qian Ding, Jiawei Zhou, Lunguang Yao, Qian Xu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.00133

Comparison of Adult Testis and Ovary MicroRNA Expression Profiles in Reeves’ Pond Turtles (Mauremys reevesii) With Temperature-Dependent Sex Determination
Cited by: 6
Author(s): Lei Xiong, Mengli Yang, Kai Zheng, Ziming Wang, Shengli Gu, Jiucui Tong, Jianjun Li, Nadar Ali Shah, Liuwang Nie
Software Mentions: 3
Published: over 6 years ago

10.1038/s41420-020-00329-4

Gut microbiota patterns associated with somatostatin in patients undergoing pancreaticoduodenectomy: a prospective study
Cited by: 10
Author(s): Guanqun Li, Tao Zhang, Yang WeiGuang, Hao-Liang Zhong, Peng Xiao, Liwei Liu, Yongwei Wang, Hua Chen, Rui Kong, Gang Wang, Hongtao Tan, Xuewei Bai, Yilong Li, Le Li, Bei Sun
Software Mentions: 3
Published: over 5 years ago

10.1186/s13287-020-01729-0

Role of CD133 in human embryonic stem cell proliferation and teratoma formation
Cited by: 21
Author(s): Hua Wang, Peng Gong, Jie Li, Yudong Fu, Zhongli Zhou, Lin Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2021.619262

The Impact of Oral-Gut Inflammation in Cerebral Palsy
Cited by: 7
Author(s): Ana Cristina Fernandes Maria Ferreira, Ryan J. Eveloff, Marcelo Freire, Maria Teresa Botti Rodrigues Santos
Software Mentions: 3
Published: over 5 years ago

10.12688/wellcomeopenres.15191.1

Raincloud plots: a multi-platform tool for robust data visualization
Cited by: 782
Author(s): Micah Allen, Davide Poggiali, Kirstie Whitaker, Tom R. Marshall, Rogier A. Kievit
Software Mentions: 3
Published: about 7 years ago

10.12688/wellcomeopenres.11246.3

Robust long-read native DNA sequencing using the ONT CsgG Nanopore system
Cited by: 24
Author(s): Jean-Michel Carter, Shobbir Hussain
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.11574

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer
Cited by: 11
Author(s): David P. Jacobson, Kathleen Moore, Camille C. Gunderson, M. Rowland, Rita M. Austin, Tanvi P. Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.7940

Characterization of the abiotic drivers of abundance of nearshore Arctic fishes
Cited by: 2
Author(s): Noah S. Khalsa, Kyle P. Gatt, Trent M. Sutton, Amanda L. Kelley
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2020.544476

Down-Regulation of MiR-181c-5p Promotes Epithelial-to-Mesenchymal Transition in Laryngeal Squamous Cell Carcinoma via Targeting SERPINE1
Cited by: 11
Author(s): Xin Li, Ping Wu, Yuhua Fan, Yalan Liu, Xing Fang, Wei Wang, Suping Zhao
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0233251

Disentangling listening effort and memory load beyond behavioural evidence: Pupillary response to listening effort during a concurrent memory task
Cited by: 10
Author(s): Yue Zhang, Alexandre Lehmann, Mickael L. D. Deroche
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2016.00361

Tissue-Specific Expression Patterns of MicroRNA during Acute Graft-versus-Host Disease in the Rat
Cited by: 20
Author(s): Dasaradha Jalapothu, Margherita Boieri, Rachel E Crossland, Pranali Shah, Isha A. Butt, Jean Norden, Ralf Dressel, AM Dickinson, Marit Inngjerdingen
Software Mentions: 3
Published: almost 10 years ago

10.7554/eLife.09406

An internal promoter underlies the difference in disease severity between N- and C-terminal truncation mutations of Titin in zebrafish
Cited by: 83
Author(s): Jun Zou, Diana A. Tran, Mai Baalbaki, Ling Tang, Annie Poon, Angelo Pelonero, Erron W. Titus, Christiana Yuan, Chenxu Shi, Shruthi Patchava, Elizabeth Halper, Jasmine Garg, Irina Movsesyan, Chaoying Yin, Roland S. Wu, Lisa D. Wilsbacher, Jiandong Liu, Ron Hager, Shaun R. Coughlin, Martin Jinek, Clive R. Pullinger, John P. Kane, Daniel Hart, Pui Yan Kwok, Rahul C. Deo
Software Mentions: 3
Published: over 10 years ago

10.3390/v11090792

Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour
Cited by: 20
Author(s): Christine N. Palermo, Roberta R. Fulthorpe, Rosemary Saati, Steven M. Short
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-89175-7

Concurrent X chromosome inactivation and upregulation during non-human primate preimplantation development revealed by single-cell RNA-sequencing
Cited by: 2
Author(s): Ana Luíza Cidral, Joana Carvalho Moreira de Mello, Joost Gribnau, Lygia V. Pereira
Software Mentions: 3
Published: about 5 years ago

10.1128/mBio.00505-19

Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
Cited by: 17
Author(s): José Luis López, Mauricio Javier Lozano, Antonio Lagares, María Laura Fabre, Walter Omar Draghi, María Florencia Del Papa, Mariano Pistorio, Anke Becker, Daniel Wibberg, Andreas Schlüter, Alfred Pühler, Jochen Blom, Alexander Goesmann
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2021.719355

Identification of a Prognostic Model Based on 2-Gene Signature and Analysis of Corresponding Tumor Microenvironment in Alcohol-Related Hepatocellular Carcinoma
Cited by: 1
Author(s): Yong Guo, Jie‐Jun Hu, Zhibo Zhang, Guo‐Chao Zhong, Jianping Gong, Dong Cai
Software Mentions: 3
Published: over 4 years ago

10.1099/ijsem.0.004774

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
Cited by: 10
Author(s): Xiaoying Li, Jessica L. Sutter, Jacobo de la Cuesta-Zuluaga, Jillian L. Waters, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.3766

Patterns of activity and body temperature of Aldabra giant tortoises in relation to environmental temperature
Cited by: 17
Author(s): Wilfredo Falcón, Rich P. Baxter, Samuel Furrer, Martin R. Bauert, Jean‐Michel Hatt, Gabriela Schaepman‐Strub, Arpat Özgül, Nancy Bunbury, Marcus Clauss, Dennis M. Hansen
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0151872

D-Alanine-Controlled Transient Intestinal Mono-Colonization with Non-Laboratory-Adapted Commensal E. coli Strain HS
Cited by: 10
Author(s): Miguelangel Cuenca, S. Pfister, Stefanie Buschor, Firuza Bayramova, Sara B. Hernández, Felipe Cava, Erkin Kuru, Michael S. Van Nieuwenhze, Yves V. Brun, Fernanda Coelho, Siegfried Hapfelmeier
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0247026

How does COVID-19 affect electoral participation? evidence from the French municipal elections
Cited by: 34
Author(s): Abdul Noury, François Audigier, Olivier Gergaud, Alexandre Garel
Software Mentions: 3
Published: over 5 years ago

10.3390/foods10071592

Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and Authenticity
Cited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.2185

The potential effects of climate change on amphibian distribution, range fragmentation and turnover in China
Cited by: 67
Author(s): Renyan Duan, Xiaoquan Kong, Minyi Huang, Sara Varela, Xiang Ji
Software Mentions: 3
Published: almost 10 years ago

10.1016/j.wasman.2019.04.010

Biological and thermochemical conversion of human solid waste to soil amendments
Cited by: 21
Author(s): Leilah Krounbi, Akio Enders, Harold van Es, Dominic Woolf, Brian Von Herzen, Johannes Lehmann
Software Mentions: 3
Published: about 7 years ago

10.1186/s40594-021-00306-y

Am I getting through? Surveying students on what messages they recall from the first day of STEM classes
Cited by: 6
Author(s): Clara L. Meaders, Lillian G. Senn, Brian A. Couch, A. Kelly Lane, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, Michelle K. Smith
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.2829

Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures
Cited by: 12
Author(s): V. Bleu Knight, Elba E. Serrano
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms20020401

Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic Profiles
Cited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0096727

Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing
Cited by: 53
Author(s): Ulrike Menzel, Victor Greiff, Tarik A. Khan, Ulrike Haessler, Ina Hellmann, Simon Friedensohn, Skylar C. Cook, Mark Pogson, Sai T. Reddy
Software Mentions: 3
Published: about 12 years ago

10.7554/eLife.08490

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Cited by: 363
Author(s): Simon Roux, Steven J. Hallam, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 3
Published: almost 11 years ago

10.3390/v13091834

The MAPK/ERK Pathway and the Role of DUSP1 in JCPyV Infection of Primary Astrocytes
Cited by: 4
Author(s): Michael Wilczek, Francesca J. Armstrong, Remi P. Geohegan, Colleen L. Mayberry, Jeanne K. DuShane, Benjamin L. King, Melissa S. Maginnis
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.5758

Elucidating cryptic dynamics of <i>Theileria</i> communities in African buffalo using a high‐throughput sequencing informatics approach
Cited by: 18
Author(s): Caroline K. Glidden, Anson V. Koehler, Ross S. Hall, Muhammad Saeed, Mauricio J. C. Coppo, Brianna R. Beechler, Bryan Charleston, Robin B. Gasser, Anna E. Jolles, Abdul Jabbar
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0151625

When Breathing Interferes with Cognition: Experimental Inspiratory Loading Alters Timed Up-and-Go Test in Normal Humans
Cited by: 38
Author(s): Marie-Cécile Niérat, Suela Demiri, Elise Dupuis-Lozeron, Gilles Allali, Capucine Morélot-Panzini, Thomas Similowski, Dan Adler
Software Mentions: 3
Published: over 10 years ago

10.1186/s40942-020-00209-0

Topographic analysis of macular choriocapillaris flow deficits in diabetic retinopathy using swept–source optical coherence tomography angiography
Cited by: 17
Author(s): Isaac Gendelman, A. Yasin Alibhai, Eric M. Moult, Emily S. Levine, Phillip X. Braun, Nihaal Mehta, Yi Zhao, Akihiro Ishibazawa, Osama Sorour, Caroline R. Baumal, André J. Witkin, Elias Reichel, James G. Fujimoto, Jay S. Duker, Nadia K. Waheed
Software Mentions: 3
Published: over 6 years ago

10.1128/mBio.02376-18

Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments
Cited by: 38
Author(s): John Bird, Eric D. Tague, Laura Zinke, Jenna M. Schmidt, Andrew D. Steen, Brandi Kiel Reese, Ian P. G. Marshall, Gordon Webster, Andrew J. Weightman, Hector F. Castro, Shawn R. Campagna, Karen G. Lloyd
Software Mentions: 3
Published: about 7 years ago

10.1128/mBio.00321-19

Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
Cited by: 65
Author(s): Gajender Aleti, Jonathon L. Baker, Xiaoyu Tang, R.C. González Álvarez, Márcia Dinis, Nini Chaichanasakul Tran, Alexey V. Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C. Dorrestein, Anna Edlund
Software Mentions: 3
Published: about 7 years ago

10.1128/mBio.00062-19

Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection
Cited by: 32
Author(s): Eve G D Hopkins, Theodoros I. Roumeliotis, Caroline Mullineaux-Sanders, Jyoti S. Choudhary, Gad Frankel
Software Mentions: 3
Published: about 7 years ago

10.3389/fimmu.2021.611656

IL-12p40/IL-23p40 Blockade With Ustekinumab Decreases the Synovial Inflammatory Infiltrate Through Modulation of Multiple Signaling Pathways Including MAPK-ERK and Wnt
Cited by: 16
Author(s): Renée H Fiechter, Henriëtte M. de Jong, Leonieke J J van Mens, Inka A. Fluri, Sander W. Tas, Dominique Baeten, Nataliya Yeremenko, Marleen G H van de Sande
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8144

Navigating oxygen deprivation: liver transcriptomic responses of the red eared slider turtle to environmental anoxia
Cited by: 10
Author(s): Kyle K. Biggar, Jing Zhang, Kenneth B. Storey
Software Mentions: 3
Published: over 6 years ago

10.1016/j.ijpddr.2021.01.001

TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries
Cited by: 6
Author(s): Alexander Y.F. Lam, Daniel Vuong, Aaron R. Jex, Andrew M. Piggott, Ernest Lacey, Samantha J. Emery-Corbin
Software Mentions: 3
Published: about 5 years ago

10.1002/cam4.3975

Genetic alterations associated with multiple primary malignancies
Cited by: 6
Author(s): Jenny Nyqvist, Anikó Kovács, Zakaria Einbeigi, Per Karlsson, Eva Forssell‐Aronsson, Khalil Helou, Toshima Z. Parris
Software Mentions: 3
Published: about 5 years ago

10.1128/mBio.02002-18

Network-Guided Discovery of Influenza Virus Replication Host Factors
Cited by: 22
Author(s): Emily E. Ackerman, Eiryo Kawakami, Manami Katoh, Tokiko Watanabe, Shinji Watanabe, Yuriko Tomita, Tiago J. S. Lopes, Yoshikazu Matsuoka, Hiroaki Kitano, Jason E. Shoemaker, Yoshihiro Kawaoka
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.9891

The relationship between individual phenotype and the division of labour in naked mole-rats: it’s complicated
Cited by: 17
Author(s): James D. Gilbert, Stephen J. Rossiter, Chris G. Faulkes
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2020.595877

Gene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors
Cited by: 5
Author(s): Vladimir A. Veselovsky, Marina S. Dyachkova, Egor Menyailo, Polina S. Polyaeva, Evgenii I. Olekhnovich, Egor Shitikov, Dmitry Bespiatykh, Tatiana A. Semashko, Artem S. Kasianov, Elena N. Ilina, В Н Даниленко, Ksenia M. Klimina
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8424

Airborne microbial biodiversity and seasonality in Northern and Southern Sweden
Cited by: 20
Author(s): Edvin Karlsson, Anna-Mia Johansson, Jon Ahlinder, Moa J. Lundkvist, Navinder J. Singh, Tomas Brodin, Mats Forsman, Per Stenberg
Software Mentions: 3
Published: over 6 years ago

10.3389/fvets.2021.727641

Brucella suis Seroprevalence and Associated Risk Factors in Dogs in Eastern Australia, 2016 to 2019
Cited by: 9
Author(s): Catherine C. Kneipp, Kate Sawford, Kate Wingett, Richard Malík, Mark Stevenson, Siobhan M. Mor, Anke Wiethoelter
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0187310

Evaluation of miRNA-196a2 and apoptosis-related target genes: ANXA1, DFFA and PDCD4 expression in gastrointestinal cancer patients: A pilot study
Cited by: 32
Author(s): Manal S. Fawzy, Eman A. Toraih, Afaf T. Ibrahiem, Hala Abdeldayem, Amany O. Mohamed, Mohamed M. Abdel-Daim
Software Mentions: 3
Published: over 8 years ago

10.3390/toxins13020124

Electric Blue: Molecular Evolution of Three-Finger Toxins in the Long-Glanded Coral Snake Species Calliophis bivirgatus
Cited by: 9
Author(s): Daniel Dashevsky, Darin R. Rokyta, Nathaniel Frank, Amanda Nouwens, Bryan G. Fry
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0213175

Reproducibility of sublingual microcirculation parameters obtained from sidestream darkfield imaging
Cited by: 13
Author(s): Luca Valerio, Ron J.G. Peters, Aeilko H. Zwinderman, Sara‐Joan Pinto‐Sietsma
Software Mentions: 3
Published: over 7 years ago

10.1038/s10038-020-0803-1

The clinical-phenotype continuum in DYNC1H1-related disorders—genomic profiling and proposal for a novel classification
Cited by: 26
Author(s): Lena‐Luise Becker, Hormos Salimi Dafsari, Jens Schallner, Dalia Abdin, Michael Seifert, Florence Petit, Thomas Smol, Levinus A. Bok, Lance H. Rodan, Ingrid P.C. Krapels, Stephanie Spranger, Bernhard Weschke, Katherine Johnson, Volker Straub, Angela M. Kaindl, Nataliya Di Donato, Maja von der Hagen, Sebahattin Çırak
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.bbr.2017.08.048

Automated dissection of permanent effects of hippocampal or prefrontal lesions on performance at spatial, working memory and circadian timing tasks of C57BL/6 mice in IntelliCage
Cited by: 37
Author(s): Vootele Võikar, Sven Krackow, Hans‐Peter Lipp, Anton Rau, Giovanni Colacicco, David P Wolfer
Software Mentions: 3
Published: over 7 years ago

10.3389/fimmu.2021.700152

Single-Cell Transcriptomic Profiling of MAIT Cells in Patients With COVID-19
Cited by: 16
Author(s): Jiandang Shi, Jianglin Zhou, Xiaochang Zhang, Wei Hu, Jinfang Zhao, Shengqi Wang, Fusheng Wang, Jiyuan Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1002/cam4.1905

Construction of immune-related risk signature for renal papillary cell carcinoma
Cited by: 42
Author(s): Zhongyu Wang, Qian Song, Zaixing Yang, Jianing Chen, Jun Shang, Wen Ju
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.00301-18

TgTKL1 Is a Unique Plant-Like Nuclear Kinase That Plays an Essential Role in Acute Toxoplasmosis
Cited by: 15
Author(s): Joseph M. Varberg, Isabelle Coppens, Gustavo Arrizabalaga, Rajshekhar Y. Gaji
Software Mentions: 3
Published: about 8 years ago

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