cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fpls.2018.01013

Managing Successional Stage Heterogeneity to Maximize Landscape-Wide Biodiversity of Aquatic Vegetation in Ditch Networks
Cited by: 13
Author(s): Sven Teurlincx, M.J.J.M. Verhofstad, Elisabeth S. Bakker, Steven Declerck
Software Mentions: 3
Published: almost 8 years ago

10.3390/cancers12092671

Zoledronic Acid Abrogates Restraint Stress-Induced Macrophage Infiltration, PDGF-AA Expression, and Ovarian Cancer Growth
Cited by: 13
Author(s): Claudia B. Colon-Echevarria, Tatiana Ortiz, Lizette Maldonado, Melanie J. Hidalgo-Vargas, Jaileene Pérez‐Morales, Alexandra N. Aquino-Acevedo, Roberto Herrera-Noriega, Margarita Bonilla-Claudio, Eida Castro, Guillermo N. Armaiz-Pena
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-29725-8

Fast Maximum Likelihood Estimation via Equilibrium Expectation for Large Network Data
Cited by: 20
Author(s): Maksym Byshkin, Alex Stivala, Antonietta Mira, Garry Robins, Alessandro Lomi
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-29620-2

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches
Cited by: 31
Author(s): Isaac Darko Otchere, Mireia Coscollá, Leonor Sánchez-Busó, Adwoa Asante-Poku, Daniela Brites, Chloé Loiseau, Conor J. Meehan, Stephen Osei-Wusu, Audrey Forson, Clement Laryea, Abdallah Iddrisu Yahayah, Akosua Baddoo, Gloria Akosua Ansa, Samuel Yaw Aboagye, Prince Asare, Sònia Borrell, Florian Gehre, Patrick Beckert, Thomas A. Kohl, Sanoussi N'dira, Christian Beisel, Martín Antonio, Stefan Niemann, Bouke C. de Jong, Julian Parkhill, Simon R. Harris, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 3
Published: almost 8 years ago

10.1136/bmj.k452

Maternal thyroid function and child educational attainment: prospective cohort study
Cited by: 30
Author(s): Scott M. Nelson, Caroline Haig, Alex McConnachie, Naveed Sattar, Susan M. Ring, George Davey Smith, Debbie A. Lawlor, Robert Lindsay
Software Mentions: 3
Published: over 8 years ago

10.3390/plants9121687

Genome Size Evolution and Dynamics in Iris, with Special Focus on the Section Oncocyclus
Cited by: 2
Author(s): Nour Abdel Samad, Oriane Hidalgo, Élie Saliba, Sonja Siljak‐Yakovlev, Kit Strange, Ilia J. Leitch, Magda Bou Dagher Kharrat
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-019-1570-9

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition
Cited by: 30
Author(s): Nunzio Del Gaudio, Antonella Di Costanzo, Ning Qing Liu, Lidio Conte, Antimo Migliaccio, Michiel Vermeulen, Joost H.A. Martens, Hendrik G. Stunnenberg, Angela Nebbioso, Lucia Altucci
Software Mentions: 3
Published: about 7 years ago

10.3390/plants10040809

Shade Avoidance and Light Foraging of a Clonal Woody Species, Pachysandra terminalis
Cited by: 5
Author(s): Risa Iwabe, Kohei Koyama, Riko Komamura
Software Mentions: 3
Published: about 5 years ago

10.1186/s12575-020-00125-5

Combination of Size-Exclusion Chromatography and Ultracentrifugation Improves the Proteomic Profiling of Plasma-Derived Small Extracellular Vesicles
Cited by: 33
Author(s): Rui Wei, Libo Zhao, Guanyi Kong, Xiang Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-73867-7

Repeated sampling facilitates within- and between-subject modeling of the human sperm transcriptome to identify dynamic and stress-responsive sncRNAs
Cited by: 14
Author(s): Christopher P. Morgan, Amol Shetty, Jackie Chan, David Berger, Seth A. Ament, C. Neill Epperson, Tracy L. Bale
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0227561

Parasites modulate the gut-microbiome in insects: A proof-of-concept study
Cited by: 39
Author(s): Brian L. Fredensborg, Inga Fossdal í Kálvalíð, Thor Bech Johannesen, Christen Rune Stensvold, Henrik Vedel Nielsen, Christian M. O. Kapel
Software Mentions: 3
Published: over 6 years ago

10.1007/s00122-021-03805-2

Population genomics of Mediterranean oat (A. sativa) reveals high genetic diversity and three loci for heading date
Cited by: 8
Author(s): Francisco José Canales, Gracia Montilla-Bascón, Wubishet A. Bekele, Catherine Howarth, Tim Langdon, Nicolás Rispail, Nicholas A. Tinker, Elena Prats
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-29486-4

Reproduction predicts shorter telomeres and epigenetic age acceleration among young adult women
Cited by: 53
Author(s): Calen P. Ryan, M. Geoffrey Hayes, Nanette R. Lee, Thomas W. McDade, Meaghan J. Jones, Michæl S. Kobor, Christopher W. Kuzawa, Dan T. A. Eisenberg
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13063-018-2681-9

Evaluation of the clinical effectiveness of bioactive glass (S53P4) in the treatment of non-unions of the tibia and femur: study protocol of a randomized controlled non-inferiority trial
Cited by: 11
Author(s): Michael C. Tanner, Raban Arved Heller, Fabian Westhauser, Matthias Miska, Thomas Ferbert, Christian Fischer, Simone Gantz, Gerhard Schmidmaier, Patrick Haubruck
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-27893-1

Climate-induced shifts in leaf unfolding and frost risk of European trees and shrubs
Cited by: 69
Author(s): Christof Bigler, Harald Bugmann
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2020.00778

Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago

10.1111/1751-7915.13693

Effects of growth‐promoting rhizobacteria on maize growth and rhizosphere microbial community under conservation tillage in Northeast China
Cited by: 38
Author(s): La Chen, Zhanhong Hao, Keke Li, Ye Sha, En Tao Wang, Xinhua Sui, Guohua Mi, Chang Fu Tian, Wenxin Chen
Software Mentions: 3
Published: over 5 years ago

10.3390/plants10071291

A Transcriptional Analysis of the Genes Involved in the Ascorbic Acid Pathways Based on a Comparison of the Juice and Leaves of Navel and Anthocyanin-Rich Sweet Orange Varieties
Cited by: 7
Author(s): P. Caruso, Mario Russo, Marco Caruso, Mario Di Guardo, Giuseppe Russo, Simona Fabroni, Nicolina Timpanaro, Concetta Licciardello
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-27140-7

Large trees are surrounded by more heterospecific neighboring trees in Korean pine broad-leaved natural forests
Cited by: 18
Author(s): Hongxiang Wang, Hui Peng, Hui Gao, Yanbo Hu, Zhijun Zhao
Software Mentions: 3
Published: about 8 years ago

10.1186/s13049-020-00728-7

A potential method of identifying stroke and other intracranial lesions in a prehospital setting
Cited by: 4
Author(s): Anssi Saviluoto, Heini Harve‐Rytsälä, Mitja Lääperi, Hetti Kirves, Helena Jäntti, Jouni Nurmi
Software Mentions: 3
Published: about 6 years ago

10.1007/s10803-019-04331-3

Predictors of Trauma Exposure and Trauma Diagnoses for Children with Autism and Developmental Disorders Served in a Community Mental Health Clinic
Cited by: 6
Author(s): John Hoch, Adriana M. Youssef
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.71335

End-of-life targeted degradation of DAF-2 insulin/IGF-1 receptor promotes longevity free from growth-related pathologies
Cited by: 27
Author(s): Richard Venz, Tina Pekeč, Iskra Katic, Rafal Ciosk, Collin Y. Ewald
Software Mentions: 3
Published: almost 5 years ago

10.3390/plants9050592

From Genome to Field—Observation of the Multimodal Nematicidal and Plant Growth-Promoting Effects of Bacillus firmus I-1582 on Tomatoes Using Hyperspectral Remote Sensing
Cited by: 16
Author(s): Nik Susič, Uroš Žibrat, Lovro Sinkovič, Andrej Vončina, Jaka Razinger, M. Knapič, Aleš Sedlar, Saša Širca, Barbara Gerič Stare
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2018.01603

The Beneficial Endophytic Fungus Fusariumsolani Strain K Alters Tomato Responses Against Spider Mites to the Benefit of the Plant
Cited by: 46
Author(s): Maria L. Pappas, Maria Liapoura, Dimitra Papantoniou, Marianna Avramidou, Nektarios Kavroulakis, Alexander Weinhold, George D. Broufas, Kalliope Κ. Papadopoulou
Software Mentions: 3
Published: over 7 years ago

10.3390/plants10040798

Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron
Cited by: 2
Author(s): Reunreudee Kaewcheenchai, Phanchita Vejchasarn, Kousuke Hanada, Kazumasa Shirai, Chatchawan Jantasuriyarat, Piyada Juntawong
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13081750

Combined Assessment of Immune Checkpoint Regulator VISTA on Tumor-Associated Immune Cells and Platelet-to-Lymphocyte Ratio Identifies Advanced Germ Cell Tumors with Higher Risk of Unfavorable Outcomes
Cited by: 10
Author(s): Rafał Pęksa, Michał Kunc, Marta Popęda, Michał Piątek, Michał Bieńkowski, Jolanta Żok, Anna Starzyńska, Adrian Perdyan, M Sowa, Renata Duchnowska, Wojciech Biernat
Software Mentions: 3
Published: about 5 years ago

10.1186/s40659-019-0237-4

Chronic prostatitis alters the prostatic microenvironment and accelerates preneoplastic lesions in C57BL/6 mice
Cited by: 6
Author(s): Yong Gao, Lijuan Wei, Chenbang Wang, Yuanjie Huang, Weidong Li, Tianyu Li, Chao‐Hua Mo, Hua‐Li Qin, Xiaoge Zhong, Yun Wang, Aihua Tan, Zengnan Mo, Yonghua Jiang, Yanling Hu
Software Mentions: 3
Published: about 7 years ago

10.7150/jca.50472

High Expression of RhoBTB3 Predicts Favorable Chemothrapy Outcomes in non-M3 Acute Myeloid Leukemia
Cited by: 3
Author(s): Shuanghui Yang, Wei Liu, Jie Peng, Yajing Xu, Yanfeng Liu, Yan Li, Minyuan Peng, Zhao Ouyang, Cong Chen, Enyi Liu
Software Mentions: 3
Published: over 5 years ago

10.1016/j.mex.2019.09.013

Low-cost automatic temperature monitoring system with alerts for laboratory rearing units
Cited by: 3
Author(s): François Rebaudo, Romain Benoist
Software Mentions: 3
Published: over 7 years ago

10.1038/s10038-020-0803-1

The clinical-phenotype continuum in DYNC1H1-related disorders—genomic profiling and proposal for a novel classification
Cited by: 26
Author(s): Lena‐Luise Becker, Hormos Salimi Dafsari, Jens Schallner, Dalia Abdin, Michael Seifert, Florence Petit, Thomas Smol, Levinus A. Bok, Lance H. Rodan, Ingrid P.C. Krapels, Stephanie Spranger, Bernhard Weschke, Katherine Johnson, Volker Straub, Angela M. Kaindl, Nataliya Di Donato, Maja von der Hagen, Sebahattin Çırak
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.8333

Risk-sensitive foraging does not explain condition-dependent choices in settling reef fish larvae
Cited by: 0
Author(s): Emma E Bogdan, Andrea L Dingeldein, Deirdre Bertrand, Will White
Software Mentions: 3
Published: over 6 years ago

10.1155/2019/7049294

Identification of Key Pathways and Genes in the Orai2 Mediated Classical and Mesenchymal Subtype of Glioblastoma by Bioinformatic Analyses
Cited by: 11
Author(s): Feng Yuan, Yi Li, Hai Long, Yingshuai Wang, Yihan Yang, Tao Li, Luqing Tong, Haiwen Ma, Peidong Liu, Haolang Ming, Biao Ren, Shukun Yu, Yu Lin, Xuejun Yang
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2018.00060

Inheritance of Mesotrione Resistance in an Amaranthus tuberculatus (var. rudis) Population from Nebraska, USA
Cited by: 22
Author(s): Maxwel C. Oliveira, Todd A. Gaines, Amit J. Jhala, Stevan Z. Knežević
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-5168-x

Evaluation of whole exome sequencing as an alternative to BeadChip and whole genome sequencing in human population genetic analysis
Cited by: 8
Author(s): Zoltán Maróti, Zsolt Boldogkői, Dóra Tombácz, M Snyder, Tibor Kalmár
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2019.01560

Coordination of Glucosinolate Biosynthesis and Turnover Under Different Nutrient Conditions
Cited by: 36
Author(s): Verena Jeschke, Konrad Weber, Stanley A. Moore, Meike Burow
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2020.607859

Evaluating Strategies for Adaptation to Climate Change in Grapevine Production–A Systematic Review
Cited by: 41
Author(s): Audrey Naulleau, Christian Gary, Laurent Prévot, Laure Hossard
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87479-2

Soil CO2 emission and soil attributes associated with the microbiota of a sugarcane area in southern Brazil
Cited by: 3
Author(s): Mara Regina Moitinho, Daniel De Bortoli Teixeira, Elton da Silva Bicalho, Alan Rodrigo Panosso, Antônio Sérgio Ferraudo, Gener Tadeu Pereira, Siu Mui Tsai, Beatriz Maria Ferrari Borges, Newton La Scala
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.00752

Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress–Responsive Pathways in Microalga Dunaliella
Cited by: 39
Author(s): Bahman Panahi, Mohammad Frahadian, Jacob T. Dums, Mohammad Amin Hejazi
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-26639-3

Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments
Cited by: 11
Author(s): Corné Swart, Silvia Martínez-Jaime, Michał Górka, Kerstin Zander, Alexander Graf
Software Mentions: 3
Published: about 8 years ago

10.1186/s12974-017-0906-6

A systems pharmacology-based approach to identify novel Kv1.3 channel-dependent mechanisms in microglial activation
Cited by: 49
Author(s): Srikant Rangaraju, Syed Ali Raza, Andrea Pennati, Qiudong Deng, Eric B. Dammer, Duc M. Duong, Michael W. Pennington, Malú G. Tansey, James J. Lah, Ranjita Betarbet, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 3
Published: almost 9 years ago

10.3389/fgene.2021.619056

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-020-02769-3

LEF1 mediates osteoarthritis progression through circRNF121/miR-665/MYD88 axis via NF-кB signaling pathway
Cited by: 31
Author(s): Tianfu Wang, Zhiyu Hao, Changcheng Liu, Lebin Yuan, Li Li, Menghong Yin, Qing Li, Zhiming Qi, Zi Wang
Software Mentions: 3
Published: almost 6 years ago

10.1083/jcb.201704102

Loss of E-cadherin provides tolerance to centrosome amplification in epithelial cancer cells
Cited by: 57
Author(s): Alexander D. Rhys, Pedro T. Monteiro, Christopher M. Smith, Malti Vaghela, Teresa Arnandis, Takuya Kato, Birgit Leitinger, Erik Sahai, Andrew D. McAinsh, Guillaume Charras, Susana A. Godinho
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-26766-x

Are Systemic Manifestations Ascribable to COPD in Smokers? A Structural Equation Modeling Approach
Cited by: 4
Author(s): Laurent Boyer, Sylvie Bastuji‐Garin, C. Chouaïd, B. Housset, Philippe Le Corvoisier, Geneviève Dérumeaux, Jorge Boczkowski, Bernard Maître, Serge Adnot, Étienne Audureau
Software Mentions: 3
Published: about 8 years ago

10.7554/eLife.46935

Deep generative models for T cell receptor protein sequences
Cited by: 57
Author(s): Kristian Davidsen, Branden J Olson, William S DeWitt, Jean Feng, Elias Harkins, Philip Bradley, F. A. Matsen
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsos.170296

Transcriptional response to West Nile virus infection in the zebra finch ( <i>Taeniopygia guttata</i> )
Cited by: 17
Author(s): Daniel J. Newhouse, Erik K. Hofmeister, Christopher N. Balakrishnan
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-021-86116-2

Multi-decadal trends in contingent mixing of Atlantic mackerel (Scomber scombrus) in the Northwest Atlantic from otolith stable isotopes
Cited by: 5
Author(s): Kohma Arai, Martin Castonguay, David H. Secor
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-018-1042-7

A new signaling cascade linking BMP4, BMPR1A, ΔNp73 and NANOG impacts on stem-like human cell properties and patient outcome
Cited by: 23
Author(s): Thibault Voeltzel, Mario Flores-Violante, Florence Zylbersztejn, Sylvain Lefort, Marion Billandon, Sandrine Jeanpierre, Stéphane Joly, Gaëlle Fossard, Milen Milenkov, Frédéric Mazurier, Ali Nehme, Amine Belhabri, Étienne Paubelle, Xavier Thomas, Mauricette Michallet, Fawzia Louache, Franck‐Emmanuel Nicolini, Claude Caron de Fromentel, Véronique Maguer-Satta
Software Mentions: 3
Published: over 7 years ago

10.3390/jof6040348

Human Pathogenic Candida Species Respond Distinctively to Lactic Acid Stress
Cited by: 2
Author(s): Isabella Zangl, Reinhard Beyer, Ildiko-Julia Pap, Joseph Strauss, Christoph Aspöck, Birgit Willinger, Christoph Schüller
Software Mentions: 3
Published: over 5 years ago

10.2196/19416

A Human-Algorithm Integration System for Hip Fracture Detection on Plain Radiography: System Development and Validation Study
Cited by: 10
Author(s): Chi‐Tung Cheng, Chih-Chi Chen, Fu-Jen Cheng, Huan‐Wu Chen, Yi-Siang Su, Chun‐Nan Yeh, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.545042

Molecular Evolution and Expansion of the KUP Family in the Allopolyploid Cotton Species Gossypium hirsutum and Gossypium barbadense
Cited by: 3
Author(s): Kai Fan, Zhijun Mao, Jiaxin Zheng, Yunrui Chen, Zhaowei Li, Weiwei Lin, Yongqiang Zhang, Jinwen Huang, Wenxiong Lin
Software Mentions: 3
Published: over 5 years ago

10.1038/s41398-020-01145-1

Long runs of homozygosity are associated with Alzheimer’s disease
Cited by: 5
Author(s): Sonia Moreno‐Grau, María Victoria Fernández, Itziar de Rojas, Pablo García‐González, Isabel Hernández, Fabiana Farias, John Budde, Inés Quintela, Laura Madrid, Antonio González‐Pérez, Laura Montrreal, Emilio Alarcón‐Martín, Montserrat Alegret, Olalla Maroñas, Juan A Pineda, Juan Macı́as, Marta Marquié, Sergi Valero, Alba Benaque, Jordi Clarimón, María J. Bullido, Guillermo García‐Ribas, Pau Pástor, Pascual Sánchez‐Juan, Victoria Álvarez, Gerard Piñol‐Ripoll, José María García‐Alberca, José Luis Royo, Emilio Franco‐Macías, Pablo Mir, Miguel Calero, Miguel Á. Medina, Alberto Rábano, Jesús Ávila, Carmen Antúnez, Luís Miguel Real, Adelina Orellana, Ángel Carracedo, María Eugenia Sáez, Lluís Tárraga, Merçé Boada, Carlos Cruchaga, Agustín Ruiz, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-2516-6

CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Cited by: 58
Author(s): Martin Oti, Jonas Falck, Martijn A. Huynen, Huiqing Zhou
Software Mentions: 3
Published: over 10 years ago

10.3390/jof6040311

Transcriptional Remodeling Patterns in Murine Dendritic Cells Infected with Paracoccidioides brasiliensis: More Is Not Necessarily Better
Cited by: 1
Author(s): Calliandra Maria de-Souza-Silva, Fabián Andrés Hurtado, Aldo Henrique Tavares, Getúlio Pereira de Oliveira Júnior, Tainá Raiol, Christiane Nishibe, Daniel Paiva Agustinho, Nalvo F. Almeida, Maria Tereza Machado Teles Walter, André Moraes Nicola, Anamélia Lorenzetti Bocca, Patrícia Albuquerque, Ildinete Silva-Pereira
Software Mentions: 3
Published: over 5 years ago

10.3390/pathogens9020131

Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy
Cited by: 9
Author(s): Julia Bespyatykh, Egor Shitikov, Dmitry Bespiatykh, Andrei Guliaev, Ksenia M. Klimina, Vladimir A. Veselovsky, Georgij Arapidi, Marine Dogonadze, Viacheslav Zhuravlev, Elena Ilina, Vadim M. Govorun
Software Mentions: 3
Published: over 6 years ago

10.1186/s12936-020-03220-w

The response of Plasmodium falciparum to isoleucine withdrawal is dependent on the stage of progression through the intraerythrocytic cell cycle
Cited by: 16
Author(s): Kyle Jarrod McLean, Marcelo Jacobs‐Lorena
Software Mentions: 3
Published: about 6 years ago

10.1080/20002297.2017.1374152

Effect of maltitol-containing chewing gum use on the composition of dental plaque microbiota in subjects with active dental caries
Cited by: 10
Author(s): Erica M. Prosdocimi, James Kistler, Rebecca Moazzez, Clémentine Thabuis, Caroline Perreau, William G. Wade
Software Mentions: 3
Published: over 9 years ago

10.3390/pathogens10030376

Host-Feeding Preference and Diel Activity of Mosquito Vectors of the Japanese Encephalitis Virus in Rural Cambodia
Cited by: 19
Author(s): Sébastien Boyer, Benoı̂t Durand, Sony Yean, Cécile Brengues, Pierre‐Olivier Maquart, Didier Fontenille, Véronique Chevalier
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86247-6

Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis
Cited by: 18
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiß, Corinna Bang, André Franke, Maik Pietzner, Ali Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank Ulrich Weiß, Georg Homuth, Markus M. Lerch
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-26641-9

Exploring the diversity-stability paradigm using sponge microbial communities
Cited by: 36
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 3
Published: about 8 years ago

10.1038/s41419-020-03181-7

Calcium and TRPV4 promote metastasis by regulating cytoskeleton through the RhoA/ROCK1 pathway in endometrial cancer
Cited by: 53
Author(s): Xingchen Li, Yuan Cheng, Zhiqi Wang, Jingyi Zhou, Yuanyuan Jia, Xijing He, Lijun Zhao, Yangyang Dong, Fan Yuan, Xiao Yang, Boqiang Shen, Xiangsong Wu, Jiaqi Wang, Chunyang Xiong, Lihui Wei
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.740167

Ancient Mitochondrial Genomes Reveal Extensive Genetic Influence of the Steppe Pastoralists in Western Xinjiang
Cited by: 6
Author(s): Chao Ning, Hou-Feng Zheng, Fan Zhang, Sihao Wu, Chunxiang Li, Yunlong Zhao, Yang Xu, Dong Wei, Yong Wu, Shizhu Gao, Jin Li, Yinqiu Cui
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2021.614926

Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency
Cited by: 4
Author(s): Kshitiz Dhakal, Qian Zhu, Bo Zhang, Mao Li, Song Li
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0246182

Early risk markers for severe clinical course and fatal outcome in German patients with COVID-19
Cited by: 5
Author(s): Paul Balfanz, Bojan Hartmann, Dirk Müller‐Wieland, Michael Kleines, Dennis Häckl, Nils Kossack, Alexander Kersten, Christian Cornelissen, Tobias Müller, Ayham Daher, Robert Stöhr, Johannes Bickenbach, Gernot Marx, Nikolaus Marx, Michael Dreher
Software Mentions: 3
Published: over 5 years ago

10.3390/pathogens10050517

Cytokine Biosignature of Active and Latent Mycobacterium Tuberculosis Infection in Children
Cited by: 2
Author(s): Magdalena Druszczyńska, Michał Seweryn, Sebastian Wawrocki, Magdalena Kowalewska-Pietrzak, Anna Pankowska, Wiesława Rudnicka
Software Mentions: 3
Published: about 5 years ago

10.3390/biology10050432

Identifying an lncRNA-Related ceRNA Network to Reveal Novel Targets for a Cutaneous Squamous Cell Carcinoma
Cited by: 7
Author(s): Yaqin Xu, Yingying Dong, Yansha Deng, Qian-Rong Qi, Mi Wu, Hongmei Liang, Qiuyun She, Qing Guo
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2018.01347

Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification
Cited by: 74
Author(s): Gwen Iris L. Descalsota, B. P. Mallikarjuna Swamy, Hein Zaw, Mary Ann Inabangan-Asilo, Amery Amparado, Ramil Mauleon, Prabhjit Chadha-Mohanty, Emily C. Arocena, Chitra Raghavan, Hei Leung, Jose E. Hernandez, Antonio G. Lalusin, Merlyn S. Mendioro, Ma. Genaleen Q. Diaz, Russell Reinke
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41420-021-00576-z

Identification of a prognostic ferroptosis-related lncRNA signature in the tumor microenvironment of lung adenocarcinoma
Cited by: 58
Author(s): Yugang Guo, Zhipeng Qu, Dandan Li, Fanghui Bai, Juan Xing, Qian Ding, Jiawei Zhou, Lunguang Yao, Qian Xu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-82616-3

Metabolic profiling of historical and modern wheat cultivars using proton nuclear magnetic resonance spectroscopy
Cited by: 13
Author(s): Rachana Poudel, Fatema Bhinderwala, Martha D. Morton, Robert Powers, Devin J. Rose
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89267-4

Mitigating belief projection in explainable artificial intelligence via Bayesian teaching
Cited by: 26
Author(s): Scott Cheng‐Hsin Yang, Wai Keen Vong, Ravi B. Sojitra, Tomas Folke, Patrick Shafto
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.01215

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evab064

The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
Cited by: 8
Author(s): Jesper Boman, Carina F. Mugal, Niclas Backström
Software Mentions: 3
Published: over 5 years ago

10.1186/s12974-020-01898-y

Meta-analysis of mouse transcriptomic studies supports a context-dependent astrocyte reaction in acute CNS injury versus neurodegeneration
Cited by: 54
Author(s): Sudeshna Das, Zhaozhi Li, Ayush Noori, Bradley T. Hyman, Alberto Serrano-Pozo
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-25700-5

The cytokine secretion profile of mesenchymal stromal cells is determined by surface structure of the microenvironment
Cited by: 112
Author(s): Daniëlle G. Leuning, Nick R. M. Beijer, Nadia A. du Fossé, Steven Vermeulen, Ellen Lievers, Cees van Kooten, Ton J. Rabelink, Jan de Boer
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2020.00265

Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer
Cited by: 12
Author(s): Yan Wang, Steven Chen, Xi Rao, Yunlong Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00371

De novo Assembly and Transcriptome Characterization of Opisthopappus (Asteraceae) for Population Differentiation and Adaption
Cited by: 8
Author(s): Maofeng Chai, Shengnan Wang, Jie He, Wei Chen, Zelu Fan, Jia Li, Yiling Wang
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-021-07700-4

Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides
Cited by: 8
Author(s): Lily D. Peck, Reuben W. Nowell, J. Flood, Matthew J. Ryan, Timothy G. Barraclough
Software Mentions: 3
Published: about 5 years ago

10.3390/pathogens9090679

Antibiotic Treatment in Anopheles coluzzii Affects Carbon and Nitrogen Metabolism
Cited by: 15
Author(s): Estelle Chabanol, Volker Behrends, Ghislaine Prévôt, George K. Christophides, Mathilde Gendrin
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2020.00411

Identification and Validation of Potential Biomarkers and Their Functions in Acute Kidney Injury
Cited by: 19
Author(s): Jianwen Chen, Yalei Chen, Alberto Olivero, Xiangmei Chen
Software Mentions: 3
Published: about 6 years ago

10.1186/s12879-020-05091-7

Live poultry market closure and avian influenza A (H7N9) infection in cities of China, 2013–2017: an ecological study
Cited by: 6
Author(s): Ying Chen, Jian Cheng, Zhiwei Xu, Wenbiao Hu, Jiahai Lu
Software Mentions: 3
Published: about 6 years ago

10.1038/s41398-019-0518-2

Plasma neurofilament light chain concentration is increased in anorexia nervosa
Cited by: 24
Author(s): Ida Nilsson, Vincent Millischer, Virginija Danylaitė Karrenbauer, Anders Juréus, Alireza Salehi, Claes Norring, Yvonne von Hausswolff-Juhlin, Martin Schalling, Kaj Blennow, Cynthia M. Bulik, Henrik Zetterberg, Mikael Landén
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms221810073

Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: almost 5 years ago

10.3390/pathogens8010032

Characteristics of Listeria Monocytogenes Strains Persisting in a Meat Processing Facility over a 4-Year Period
Cited by: 50
Author(s): Andrea Stoller, Marc J. A. Stevens, Roger Stephan, Claudia Guldimann
Software Mentions: 3
Published: over 7 years ago

10.1186/s12989-019-0332-2

Hepatotoxicity and the role of the gut-liver axis in rats after oral administration of titanium dioxide nanoparticles
Cited by: 71
Author(s): Zhangjian Chen, Di Zhou, Shuo Han, Shiyong Zhou
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.638555

Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome
Cited by: 9
Author(s): Huan Liu, Su-Xian Long, Shannon R. M. Pinson, Zhong Tang, Mary Lou Guerinot, David E. Salt, Fang‐Jie Zhao, Xin‐Yuan Huang
Software Mentions: 3
Published: over 5 years ago

10.1186/s13071-021-04853-9

The seasonal dynamics and biting behavior of potential Anopheles vectors of Plasmodium knowlesi in Palawan, Philippines
Cited by: 2
Author(s): Richard Paul B. Malijan, Frank Mechan, Jessie C. Braganza, Kristelle Mae R. Valle, Ferdinand V. Salazar, Majhalia Torno, Wilfredo E. Aure, Brian Bacay, Fe Esperanza Espino, Stephen J. Torr, Kimberly Fornace, Chris Drakeley, Heather M. Ferguson
Software Mentions: 3
Published: almost 5 years ago

10.1128/JB.00607-20

Alkaline pH Increases Swimming Speed and Facilitates Mucus Penetration for Vibrio cholerae
Cited by: 9
Author(s): Nguyen T. Q. Nhu, John S. Lee, Helen J. Wang, Y. Dufour
Software Mentions: 3
Published: over 5 years ago

10.1186/s13071-018-2737-4

The epidemiology of Rickettsia felis infecting fleas of companion animals in eastern Australia
Cited by: 3
Author(s): Yen Thon Teoh, Sze Fui Hii, Stephen Graves, Robert Rees, John Stenos, Rebecca J. Traub
Software Mentions: 3
Published: over 8 years ago

10.1136/bmjresp-2021-001029

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study
Cited by: 19
Author(s): Oliver Stirrup, Florencia A.T. Boshier, Cristina Venturini, José Afonso Guerra-Assunção, Adela Alcolea-Medina, Angela H. Beckett, Themoula Charalampous, Ana da Silva Filipe, Sharon Glaysher, Tabassum Khan, Raghavendran Kulasegaran‐Shylini, Beatrix Kele, Irene Monahan, Guy Mollett, Matthew Parker, Emanuela Pelosi, Paul Randell, Sunando Roy, Joshua F. Taylor, Sophie Joanne Weller, Eleri Wilson-Davies, Phillip Wade, Rachel Williams, Andrew Copas, Maria-Teresa Cutino-Moguel, Nick Freemantle, Andrew Hayward, Alison Holmes, Joseph Hughes, Tabitha Mahungu, Gaia Nebbia, David G Partridge, Cassie F. Pope, James R. Price, Samuel Robson, Kordo Saeed, Thushan I. de Silva, Luke B Snell, Emma C. Thomson, Adam A. Witney, Judith Breuer
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2018.00083

Adjusting for Batch Effects in DNA Methylation Microarray Data, a Lesson Learned
Cited by: 57
Author(s): Emily Price, Wendy P. Robinson
Software Mentions: 3
Published: over 8 years ago

10.1186/s13059-020-01990-9

A multidimensional systems biology analysis of cellular senescence in aging and disease
Cited by: 144
Author(s): Roberto A. Avelar, Javier Gómez Ortega, Robi Tăcutu, Eleanor J. Tyler, Dominic Bennett, Paolo Binetti, Arie Budovsky, Kasit Chatsirisupachai, Emily Johnson, Alex Murray, Samuel Shields, Daniela Tejada‐Martinez, Daniel Thornton, Vadim E. Fraifeld, Cleo L. Bishop, João Pedro de Magalhães
Software Mentions: 3
Published: about 6 years ago

10.1016/j.ijcha.2021.100716

Update and, internal and temporal-validation of the FRANCE-2 and ACC-TAVI early-mortality prediction models for Transcatheter aortic Valve Implantation (TAVI) using data from the Netherlands heart registration (NHR)
Cited by: 5
Author(s): Hatem Al-Farra, Bas A.J.M. de Mol, Anita C.J. Ravelli, W. J. P. P. ter Burg, Saskia Houterman, José P.S. Henriques, Ameen Abu‐Hanna
Software Mentions: 3
Published: over 5 years ago

10.1038/s41420-020-00329-4

Gut microbiota patterns associated with somatostatin in patients undergoing pancreaticoduodenectomy: a prospective study
Cited by: 10
Author(s): Guanqun Li, Tao Zhang, Yang WeiGuang, Hao-Liang Zhong, Peng Xiao, Liwei Liu, Yongwei Wang, Hua Chen, Rui Kong, Gang Wang, Hongtao Tan, Xuewei Bai, Yilong Li, Le Li, Bei Sun
Software Mentions: 3
Published: over 5 years ago

10.1186/s13071-017-2075-y

Serological evidence of exposure to Rickettsia felis and Rickettsia typhi in Australian veterinarians
Cited by: 21
Author(s): Yen Thon Teoh, Sze Fui Hii, Mark Stevenson, Stephen Graves, Robert Rees, John Stenos, Rebecca J. Traub
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2018.00869

A Novel and Convenient Method for Early Warning of Algal Cell Density by Chlorophyll Fluorescence Parameters and Its Application in a Highland Lake
Cited by: 21
Author(s): Huan Wang, Rong Zhu, Jia Zhang, Leyi Ni, Hong Shen, Ping Xie
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-24911-0

Calibrating facial morphs for use as stimuli in biological studies of social perception
Cited by: 9
Author(s): Sonja Windhager, Fred L. Bookstein, Hanna Mueller, Elke Zunner, Sylvia Kirchengast, Katrin Schæfer
Software Mentions: 3
Published: about 8 years ago

10.1186/s12879-020-05571-w

Pharmacist-led counselling intervention to improve antiretroviral drug adherence in Pakistan: a randomized controlled trial
Cited by: 9
Author(s): Zeenat Fatima Chatha, Usman Rashid, Sharon Olsen, Fakhar ud Din, Amjad Khan, Komal Nawaz, Siew Hua Gan, Gul Majid Khan
Software Mentions: 3
Published: over 5 years ago

10.1074/jbc.M114.634816

Early Growth Response Genes 2 and 3 Regulate the Expression of Bcl6 and Differentiation of T Follicular Helper Cells
Cited by: 26
Author(s): Ane Ogbe, Tizong Miao, Alistair L. J. Symonds, Becky Omodho, Randeep Singh, Punamdip Bhullar, Suling Li, Ping Wang
Software Mentions: 3
Published: almost 11 years ago

10.21203/rs.3.rs-86169/v1

Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters
Cited by: 11
Author(s): Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk Woo Chan, Zi‐Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chun Yiu Chan, Vincent Kwok Man Poon, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Sheng Li, Yushen Du, Wan Xu, Kong-Hung Sze, Jinxia Zhang, Hin Chu, Kin‐Hang Kok, Kelvin Kai-Wang To, Dong-Yan Jin, Ren Sun, Sumit K. Chanda, Kwok‐Yung Yuen
Software Mentions: 3
Published: over 5 years ago

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