cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1007/s00216-019-01976-y

Quantification of nitroaromatic explosives in contaminated soil using MALDI-TOF mass spectrometry
Cited by: 11
Author(s): Susan Kober, Henner Hollert, Marcus Frohme
Software Mentions: 3
Published: almost 7 years ago

10.1155/2020/6827057

Development of a Ten-lncRNA Signature Prognostic Model for Breast Cancer Survival: A Study with the TCGA Database
Cited by: 11
Author(s): Wenqing Zhou, Yongkui Pang, Yunmin Yao, Huiying Qiao
Software Mentions: 3
Published: almost 6 years ago

10.1007/s10071-020-01410-2

Who turns to the human? Companion pigs’ and dogs’ behaviour in the unsolvable task paradigm
Cited by: 13
Author(s): Paula Pérez Fraga, László Gerencsér, Melinda Lovas, Dóra Újváry, Attila Andics
Software Mentions: 3
Published: almost 6 years ago

10.1007/s10071-018-1220-0

Sight or smell: which senses do scavenging raptors use to find food?
Cited by: 16
Author(s): Simon Potier, Olivier Duriez, Aurélie Célérier, Jean Louis Liegeois, Francesco Bonadonna
Software Mentions: 3
Published: over 7 years ago

10.1186/s42523-020-00068-y

Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
Cited by: 7
Author(s): Raphael Eisenhofer, Kristofer M. Helgen, David A. Taggart
Software Mentions: 3
Published: over 5 years ago

10.1186/s42523-021-00106-3

Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review
Cited by: 17
Author(s): Chian Teng Ong, Conny Turni, G. Boe-Hansen, B. J. Hayes, A.E. Lew-Tabor
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11030801

Cryptosporidium spp. and Giardia spp. in Free-Ranging Introduced Monk Parakeets from Santiago, Chile
Cited by: 5
Author(s): Alejandra Sandoval-Rodríguez, Daniela Marcone, Raúl Alegría-Morán, Matilde Larraechea, Karina Yévenes, Fernando Fredes, Cristóbal Briceño
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10091641

The Effect of Transitioning between Feeding Methods on the Gut Microbiota Dynamics of Yaks on the Qinghai–Tibet Plateau
Cited by: 11
Author(s): Xiaoling Zhang, Tianwei Xu, Xungang Wang, Yuanyue Geng, Hongjin Liu, Linyong Hu, Na Zhao, Shenghong Kang, Wan-Min Zhang, Shixiao Xu
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani10020348

Effects of Farrowing Stall Layout and Number of Heat Lamps on Sow and Piglet Production Performance
Cited by: 8
Author(s): Suzanne M Leonard, Hongwei Xin, T. M. Brown–Brandl, Brett C. Ramirez, Somak Dutta, Gary A. Rohrer
Software Mentions: 3
Published: over 6 years ago

10.3390/ani10030426

Effects of Different Stroking Styles on Behaviour and Cardiac Parameters in Heifers
Cited by: 10
Author(s): Annika Lange, Sandra Franzmayr, Vera Wisenöcker, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 3
Published: over 6 years ago

10.3390/ani11020344

Optimal Flow—A Pilot Study Balancing Sheep Movement and Welfare in Abattoirs
Cited by: 2
Author(s): Melissa J. Starling, Elyssa Payne, Paul D. McGreevy
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11061604

The Impact of Age at First Lambing on Milk Yield and Lactation Length in a Population of Istrian Sheep under Semi-Intensive Management
Cited by: 2
Author(s): Ante Kasap, Jelena Ramljak, Boro Mioč, Valentino Držaić, Ivan Širić, Darko Jurković, Marija Špehar
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11071927

Genome-Wide Association Study on Reproduction-Related Body-Shape Traits of Chinese Holstein Cows
Cited by: 16
Author(s): Xubin Lu, Ismail Mohamed Abdalla, Mudasir Nazar, Yongliang Fan, Zhipeng Zhang, Xinyue Wu, Tianle Xu, Zhangping Yang
Software Mentions: 3
Published: almost 5 years ago

10.3390/ani10091632

Risky Business: Live Non-CITES Wildlife UK Imports and the Potential for Infectious Diseases
Cited by: 15
Author(s): Jennah Green, Emma Coulthard, John Norrey, David Megson, Neil D’Cruze
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani11030588

A Comparative Perspective on Three Primate Species’ Responses to a Pictorial Emotional Stroop Task
Cited by: 13
Author(s): Lydia M. Hopper, Matthias Allritz, Crystal L. Egelkamp, Sarah M. Huskisson, Sarah L. Jacobson, Jesse G. Leinwand, Stephen R. Ross
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11082457

Individual Nest Site Preferences Do Not Explain Upslope Population Shifts of a Secondary Cavity-Nesting Species
Cited by: 0
Author(s): Elisa Abeyta, Andrew W. Bartlow, Charles D. Hathcock, Jeanne M. Fair
Software Mentions: 3
Published: almost 5 years ago

10.3390/ani11092549

Data Collection for the Fourth Multicentre Confidential Enquiry into Perioperative Equine Fatalities (CEPEF4) Study: New Technology and Preliminary Results
Cited by: 13
Author(s): Miguel Gozalo‐Marcilla, Regula Bettschart‐Wolfensberger, Mark Johnston, Polly Taylor, J. I. Redondo
Software Mentions: 3
Published: almost 5 years ago

10.3390/ani11040938

Assessment of the Behavioural Response of Korean Water Deer (Hydropotes inermis argyropus) to Different Fence Heights
Cited by: 3
Author(s): Hee-Bok Park, Donggul Woo, Tae Young Choi, Sungwon Hong
Software Mentions: 3
Published: about 5 years ago

10.3390/ani9100745

Can Responsible Ownership Practices Influence Hunting Behavior of Owned Cats?: Results from a Survey of Cat Owners in Chile
Cited by: 12
Author(s): Sebastián Escobar, Raúl Alegría-Morán, Javiera Calderón-Amor, Tamara Tadich
Software Mentions: 3
Published: over 6 years ago

10.3390/ani11051198

Does Traditional Feeding of Outdoor Guard Dogs Provide a Food Resource for Wild Mammals and Birds?
Cited by: 2
Author(s): Róża Andrzejczak, Łukasz Dylewski, Leszek Jerzak, Branislav Peťko, Łukasz Myczko
Software Mentions: 3
Published: about 5 years ago

10.3390/ani7120096

Should the Contribution of One Additional Lame Cow Depend on How Many Other Cows on the Farm Are Lame?
Cited by: 11
Author(s): Peter Sandøe, Björn Forkman, Franziska Hakansson, S.N. Andreasen, Rikke Nøhr, Matt Denwood, Thomas Bøker Lund
Software Mentions: 3
Published: over 8 years ago

10.1080/07853890.2021.1908588

Multi-omics reveals novel prognostic implication of SRC protein expression in bladder cancer and its correlation with immunotherapy response
Cited by: 9
Author(s): Wenhao Xu, Aihetaimujiang Anwaier, Chao Ma, Wangrui Liu, Xi Tian, Maierdan Palihati, Xiaoxin Hu, Yuanyuan Qu, Ye Zhang, Dingwei Ye
Software Mentions: 3
Published: over 5 years ago

10.3390/antibiotics9020055

A 28 Day Clinical Assessment of a Lactic Acid-containing Antimicrobial Intimate Gel Wash Formulation on Skin Tolerance and Impact on the Vulvar Microbiome
Cited by: 11
Author(s): Elizabeth Bruning, Ying Chen, Karen McCue, Joseph R. Rubino, Jeremy E. Wilkinson, Alan D. Brown
Software Mentions: 3
Published: over 6 years ago

10.3390/antibiotics10050491

New Sequence Type ST3449 in Multidrug-Resistant Pseudomonas aeruginosa Isolates from a Cystic Fibrosis Patient
Cited by: 4
Author(s): Catalina Díaz-Ríos, Marta Hernández, David Abad, Laura Álvarez-Montes, Athanasia Varsaki, David Iturbe-Fernández, Jorge Calvo, Alain A. Ocampo-Sosa
Software Mentions: 3
Published: about 5 years ago

10.3390/antibiotics10080926

Protective Effect of Baicalin against Clostridioides difficile Infection in Mice
Cited by: 4
Author(s): Abraham Joseph Pellissery, Poonam Gopika Vinayamohan, Deepa Kuttappan, Neha Mishra, B. O. Fragomeni, Kendra Maas, Shankumar Mooyottu, Kumar Venkitanarayanan
Software Mentions: 3
Published: almost 5 years ago

10.3390/antibiotics10040364

Towards a Better and Harmonized Education in Antimicrobial Stewardship in European Veterinary Curricula
Cited by: 14
Author(s): Carmen Espinosa-Gongora, Lisbeth Rem Jessen, Oliver James Dyar, Alain Bousquet‐mélou, Bruno González‐Zorn, Céline Pulcini, G. Re, Štefan Schwarz, Dorina Timofte, Pierre‐Louis Toutain, Luca Guardabassi
Software Mentions: 3
Published: about 5 years ago

10.3390/antibiotics10050557

Pharmacokinetic/Pharmacodynamic Target Attainment Based on Measured versus Predicted Unbound Ceftriaxone Concentrations in Critically Ill Patients with Pneumonia: An Observational Cohort Study
Cited by: 8
Author(s): Matthias Gijsen, Erwin Dreesen, Ruth Van Daele, Pieter Annaert, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 3
Published: about 5 years ago

10.3390/antiox10091484

Aryl Hydrocarbon Receptor and Cysteine Redox Dynamics Underlie (Mal)adaptive Mechanisms to Chronic Intermittent Hypoxia in Kidney Cortex
Cited by: 6
Author(s): Maria João Correia, António B. Pimpão, Filipa Lopes‐Coelho, Catarina O. Sequeira, Nuno R. Coelho, Clara Gonçalves-Dias, Robert Barouki, Xavier Coumoul, Jacinta Serpa, Judit Morelló, Emília C. Monteiro, Sofia A. Pereira
Software Mentions: 3
Published: almost 5 years ago

10.1128/AEM.02164-18

Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry
Cited by: 25
Author(s): Laura Zinke, Clemens Glombitza, John Bird, Hans Røy, Bo Barker Jørgensen, Karen G. Lloyd, Jan P. Amend, Brandi Kiel Reese
Software Mentions: 3
Published: over 7 years ago

10.1128/AEM.02851-18

High Genetic Potential for Proteolytic Decomposition in Northern Peatland Ecosystems
Cited by: 4
Author(s): Emily B. Graham, Fan Yang, Sheryl Bell, Kirsten Hofmockel
Software Mentions: 3
Published: about 7 years ago

10.1128/AEM.02803-20

Localization of Bacterial Communities within Gut Compartments across Cephalotes Turtle Ants
Cited by: 14
Author(s): Peter J. Flynn, Catherine L. D’Amelio, Jon G. Sanders, Jacob A. Russell, Corrie S. Moreau
Software Mentions: 3
Published: about 5 years ago

10.1128/AEM.01007-19

Vibrio parahaemolyticus in the Chesapeake Bay: Operational In Situ Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements
Cited by: 12
Author(s): Benjamin J. K. Davis, John M. Jacobs, Benjamin F. Zaitchik, Angelo DePaola, Frank C. Curriero
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00204-020-02765-8

Human variability in isoform-specific UDP-glucuronosyltransferases: markers of acute and chronic exposure, polymorphisms and uncertainty factors
Cited by: 23
Author(s): Emma E.J. Kasteel, K. Darney, Nynke I. Kramer, Jean‐Lou Dorne, L.S. Lautz
Software Mentions: 3
Published: about 6 years ago

10.1186/s13075-019-2069-6

High-throughput sequencing of CD4+ T cell repertoire reveals disease-specific signatures in IgG4-related disease
Cited by: 11
Author(s): Liwen Wang, Panpan Zhang, Jieqiong Li, Hui Lu, Linyi Peng, Jing Ling, Xuan Zhang, Xiaofeng Zeng, Yan Zhao
Software Mentions: 3
Published: over 6 years ago

10.1186/s13075-017-1273-5

Varying the item format improved the range of measurement in patient-reported outcome measures assessing physical function
Cited by: 11
Author(s): Gregor Liegl, Barbara Gandek, Felix Fischer, Jakob Bue Bjørner, John E. Ware, Matthias Rose, James F. Fries, Sandra Nolte
Software Mentions: 3
Published: over 9 years ago

10.1186/s13075-018-1702-0

Cytokine production by activated plasmacytoid dendritic cells and natural killer cells is suppressed by an IRAK4 inhibitor
Cited by: 38
Author(s): Karin Hjorton, Niklas Hagberg, Elisabeth Israelsson, Lisa Jinton, Olof Berggren, Johanna K. Sandling, Kristofer Thörn, John Mo, Maija‐Leena Eloranta, Lars Rönnblom
Software Mentions: 3
Published: over 7 years ago

10.5713/ajas.19.0427

Effects of multi-strain probiotic supplementation on intestinal microbiota, tight junctions, and inflammation in young broiler chickens challenged with Salmonella enterica subsp. enterica
Cited by: 23
Author(s): Chi Huan Chang, Po-Yun Teng, Tzu-Tai Lee, Bin Yu
Software Mentions: 3
Published: over 5 years ago

10.1002/aur.2390

“Reading the Mind in the Eyes” in Autistic Adults is Modulated by Valence and Difficulty: An InFoR Study
Cited by: 3
Author(s): Matias Baltazar, Marie‐Maude Geoffray, Christopher H. Chatham, Manuel Bouvard, Axelle Martinez Teruel, D. Monnet, Isabelle Scheid, E. Murzi, Sandrine Couffin-Cadièrgues, Daniel Umbricht, Lorraine Murtagh, Richard Delorme, Myriam Ly Le-Moal, Marion Leboyer, Anouck Amestoy
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2105-15-28

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data
Cited by: 13
Author(s): Charles N. Cole, Konstantinos Krampis, Konstantinos Karagiannis, Jonas S. Almeida, William J. Faison, Mona Motwani, Qing Wan, Anton Golikov, Yang Pan, Vahan Simonyan, Raja Mazumder
Software Mentions: 3
Published: over 12 years ago

10.1186/s12859-018-2133-2

TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing
Cited by: 1
Author(s): Michele Farris, Andrew R. Scott, Pamela A. Texter, Marta Bartlett, Patricia Coleman, David J. Masters
Software Mentions: 3
Published: about 8 years ago

10.1186/s12859-019-3187-5

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks
Cited by: 51
Author(s): Attayeb Mohsen, Jonguk Park, Yi‐An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-021-04338-7

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data
Cited by: 1
Author(s): Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-020-3411-3

Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data
Cited by: 17
Author(s): Guang‐Hui Fu, Yuan-Jiao Wu, Min-Jie Zong, Jianxin Pan
Software Mentions: 3
Published: over 6 years ago

10.1186/s12915-015-0200-y

Emergent material properties of developing epithelial tissues
Cited by: 31
Author(s): Pedro F. Machado, Julia Duque, Jocelyn Étienne, Alfonso Martínez-Arias, Guy B. Blanchard, Nicole Gorfinkiel
Software Mentions: 3
Published: over 10 years ago

10.1186/s12915-021-01004-5

Transcription initiation of distant core promoters in a large-sized genome of an insect
Cited by: 2
Author(s): Qing Liu, Feng Jiang, Jie Zhang, Li Xiao, Le Kang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12915-019-0730-9

Joint learning improves protein abundance prediction in cancers
Cited by: 12
Author(s): Hongyang Li, Omer Siddiqui, Hongjiu Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/1741-7007-10-85

Multiparameter behavioral profiling reveals distinct thermal response regimes in Caenorhabditis elegans
Cited by: 43
Author(s): Rajarshi Ghosh, Aylia Mohammadi, Leonid Kruglyak, William S. Ryu
Software Mentions: 3
Published: over 13 years ago

10.1186/s12915-021-01108-y

Mutant resources for functional genomics in Dictyostelium discoideum using REMI-seq technology
Cited by: 14
Author(s): Nicole Gruenheit, Amy Baldwin, Balint Stewart, Sarah Jaques, Thomas Keller, Katie Parkinson, William Salvidge, Robert Baines, Chris Brimson, Jason B. Wolf, Rex L. Chisholm, Adrian J. Harwood, Christopher Thompson
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12915-020-00906-0

Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation
Cited by: 35
Author(s): Lorraine A. Draper, Feargal J. Ryan, Marion Dalmasso, Pat G. Casey, A. McCann, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-018-0579-3

Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans
Cited by: 14
Author(s): Rebecca E. W. Kaplan, Amy K. Webster, Rojin Chitrakar, Joseph A. Dent, L. Ryan Baugh
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-021-08319-0

Identification of 4-genes model in papillary renal cell tumor microenvironment based on comprehensive analysis
Cited by: 4
Author(s): Lun Luo, Haiyi Zhou, Hao Su
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08456-6

Elevated TYROBP expression predicts poor prognosis and high tumor immune infiltration in patients with low-grade glioma
Cited by: 20
Author(s): Jiajie Lu, Yün Peng, Rihong Huang, Zejia Feng, Yongyang Fan, Haojian Wang, Zhiyong Zeng, Yunxiang Ji, Yezhong Wang, Zhaotao Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08203-x

A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer
Cited by: 5
Author(s): Xin Zhong, Feichao Xuan, Yun Qian, Junhai Pan, Suihan Wang, Wenchao Chen, Tianyu Lin, Hepan Zhu, Xianfa Wang, Guanyu Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08681-z

Genome-wide profiling of alternative splicing in glioblastoma and their clinical value
Cited by: 3
Author(s): Youwei Li, Dongsheng Guo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08550-9

Quantification of m6A RNA methylation modulators pattern was a potential biomarker for prognosis and associated with tumor immune microenvironment of pancreatic adenocarcinoma
Cited by: 30
Author(s): Lianzi Wang, Shubing Zhang, Huimin Li, Yang Xu, Qiang Wu, Jilong Shen, Tao Li, Yuanhong Xu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08320-7

Genomic features of rapid versus late relapse in triple negative breast cancer
Cited by: 9
Author(s): Yiqing Zhang, Sarah Asad, Zachary Weber, David Tallman, William Nock, Meghan Wyse, Jerome F. Bey, Kristin L. Dean, Elizabeth Adams, Sinclair Stockard, Jasneet Singh, Eric P. Winer, Nancy U. Lin, Yi‐Zhou Jiang, Ding Ma, Peng Wang, Leming Shi, Wei Huang, Mathew Cherian, Maryam B. Lustberg, Bhuvaneswari Ramaswamy, Sagar Sardesai, Jeffrey VanDeusen, Nicole Williams, Robert Wesolowski, Samilia Obeng‐Gyasi, Gina M. Sizemore, Claire F. Verschraegen, Daniel G. Stover
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08547-4

Correlation between vascular endothelial growth factor pathway and immune microenvironment in head and neck squamous cell carcinoma
Cited by: 4
Author(s): Chao Zhu, Liqun Gu, Zelong Liu, Li Jiang, Meiling Yao, Changyun Fang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08276-8

Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer
Cited by: 6
Author(s): Yichao Li, Sushila Jaiswal, Rupleen Kaur, Dana Alsaadi, Xiaoyu Liang, Frank A. Drews, Julie A. DeLoia, Thomas C. Krivak, Hanna M. Petrykowska, Valer Gotea, Lonnie R. Welch, Laura Elnitski
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12872-021-01948-0

The association between serum alanine aminotransferase and hypertension: A national based cross-sectional analysis among over 21 million Chinese adults
Cited by: 9
Author(s): Jiajing Jia, Ying Yang, Fangchao Liu, Minjin Zhang, Qin Xu, Tonglei Guo, Long Wang, Zuoqi Peng, Yuan He, Yuanyuan Wang, Ya Zhang, Honggang Zhang, Haiping Shen, Yiping Zhang, Donghai Yan, Xu Ma, Puhong Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-021-01907-5

Cranial shape diversification in horses: variation and covariation patterns under the impact of artificial selection
Cited by: 4
Author(s): Pauline Hanot, Jamsranjav Bayarsaikhan, Claude Guintard, Ashleigh Haruda, Enkhbayar Mijiddorj, Renate Schafberg, William Taylor
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12862-021-01782-0

An interplay of resource availability, population size and mutation rate potentiates the evolution of metabolic signaling
Cited by: 1
Author(s): Bhaskar Kumawat, Ramray Bhat
Software Mentions: 3
Published: about 5 years ago

10.1186/s12862-016-0765-2

Competitive males have higher quality sperm in a monogamous social bee
Cited by: 12
Author(s): Sheina Koffler, Hiára Marques Meneses, Astrid de Matos Peixoto Kleinert, Rodolfo Jaffé
Software Mentions: 3
Published: over 9 years ago

10.1186/s12862-014-0231-y

Osteohistological variation in growth marks and osteocyte lacunar density in a theropod dinosaur (Coelurosauria: Ornithomimidae)
Cited by: 44
Author(s): Thomas M. Cullen, David C. Evans, Michael J. Ryan, Philip J. Currie, Yoshiyuki Kobayashi
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-230X-13-148

Treatment of chronic HCV genotype 1 infection with telaprevir: a Bayesian mixed treatment comparison of fixed-length and response-guided treatment regimens in treatment-naïve and –experienced patients
Cited by: 3
Author(s): Armin D. Goralczyk, Silke Cameron, Ahmad Amanzada
Software Mentions: 3
Published: over 12 years ago

10.1186/s12864-018-5041-y

Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)
Cited by: 30
Author(s): Chongjing Xia, Meinan Wang, Chuntao Yin, Omar E. Cornejo, Scot H. Hulbert, X. M. Chen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-017-4198-0

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers
Cited by: 67
Author(s): Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin Ward‐Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Mélanie Waldenberger
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-018-4845-0

Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton
Cited by: 7
Author(s): Yujuan Zhang, Chengxu Zhu, Yiran Ding, Yan Zeng, Gong‐Hua Li, Ling Yang, Jianfan Wen, Bin Chen
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-019-5803-1

Expression dynamics of repetitive DNA in early human embryonic development
Cited by: 31
Author(s): Cihangir Yandım, Gökhan Karakülah
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-019-5923-7

Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization
Cited by: 15
Author(s): Rong Ma, Juliana Rangel, Christina M. Grozinger
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-016-3369-8

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Cited by: 39
Author(s): Markus Schlegel, Martin Münsterkötter, Ulrich Güldener, Rémy Bruggmann, Angelo Duò, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grünig
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-015-2063-6

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Cited by: 73
Author(s): Robert M. Bowers, Alicia Clum, Hope Tice, Joanne Lim, Kanwar Pal Singh, Doina Ciobanu, Chew Yee Ngan, Jan‐Fang Cheng, Susannah G. Tringe, Tanja Woyke
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-021-07835-4

Investigating the genetic architecture of disease resilience in pigs by genome-wide association studies of complete blood count traits collected from a natural disease challenge model
Cited by: 3
Author(s): Xue Bai, Tong Yang, Austin M. Putz, Zhiquan Wang, Changxi Li, Frédéric Fortin, John C. S. Harding, Michael K. Dyck, Jack C. M. Dekkers, Catherine J. Field, Graham Plastow
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-015-1617-y

High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse
Cited by: 5
Author(s): Kevin Mäder, Leah Rae Donahue, Ralph Müller, Marco Stampanoni
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-018-5167-y

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents
Cited by: 13
Author(s): Audrey Segura, Marine Bertoni, Pauline Auffret, Christophe Klopp, Olivier Bouchez, Clémence Genthon, Alexandra Durand, Yolande Bertin, Evelyne Forano
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-017-4385-z

Transcriptional effects of a positive feedback circuit in Drosophila melanogaster
Cited by: 5
Author(s): Jarosław Bryk, R. Guy Reeves, Floyd A. Reed, Jai A. Denton
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-020-07310-6

Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
Cited by: 23
Author(s): Shan Feng, Hongcheng Fang, Xia Liu, Yixin Dong, Qingpeng Wang, Ke Qiang Yang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5197-5

Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit
Cited by: 40
Author(s): Peter A. McAtee, Lara Brian, Ben Curran, Otto van der Linden, Niels J. Nieuwenhuizen, Xiuyin Chen, Rebecca A. Henry-Kirk, Erin A. Stroud, Simona Nardozza, Jay Jayaraman, Erik H. A. Rikkerink, Cris Print, Andrew C. Allan, Matthew D. Templeton
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-017-3719-1

Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Cited by: 42
Author(s): Xiaochun Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Chen Yan, Huaming Xu, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Surong Shuai, Lin Bai, Haifeng Liu, Jideng Ma, Long Jin, Anxiang Wen, Qin Wang, Guangxiang Zhu, Meng Xie, Jiayun Wu, Tao He, Chunyu Huang, Xiang Gao, Xuewei Li
Software Mentions: 3
Published: about 9 years ago

10.1186/s12864-021-07900-y

LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data
Cited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-019-5816-9

The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation
Cited by: 19
Author(s): Guilherme Costa Baião, Daniela Schneider, Wolfgang J. Miller, Lisa Klasson
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-020-06925-z

Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing
Cited by: 9
Author(s): Jie Cheng, Huangqing Zhao, Ningbo Chen, Xiukai Cao, Quratulain Hanif, Li Pi, Linyong Hu, Buren Chaogetu, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Hong Chen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-015-1586-1

Comparative transcriptome profiling of Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses
Cited by: 61
Author(s): Peilong Sun, Yunxiang Mao, Guiyang Li, Min Cao, Fanna Kong, Lili Wang, Guoan Bi
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-021-07700-4

Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides
Cited by: 8
Author(s): Lily D. Peck, Reuben W. Nowell, J. Flood, Matthew J. Ryan, Timothy G. Barraclough
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-016-3257-2

MetaTopics: an integration tool to analyze microbial community profile by topic model
Cited by: 15
Author(s): Jifang Yan, Guohui Chuai, Tao Qi, Fangyang Shao, Chi Zhou, Chenyu Zhu, Jing Yang, Yifei Yu, Cong Shi, Kang Ning, Yuan He, Qi Liu
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-018-4751-5

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast
Cited by: 33
Author(s): Cene Gostinčar, Jason E. Stajich, Jerneja Zupančič, Polona Zalar, Nina Gunde‐Cimerman
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-018-5168-x

Evaluation of whole exome sequencing as an alternative to BeadChip and whole genome sequencing in human population genetic analysis
Cited by: 8
Author(s): Zoltán Maróti, Zsolt Boldogkői, Dóra Tombácz, M Snyder, Tibor Kalmár
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-016-2516-6

CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Cited by: 58
Author(s): Martin Oti, Jonas Falck, Martijn A. Huynen, Huiqing Zhou
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-019-6229-5

Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae
Cited by: 14
Author(s): Marco Tulio Solano-De la Cruz, Jacel Adame-García, Josefat Gregorio-Jorge, Verónica Jiménez-Jacinto, Leticia Vega‐Alvarado, Lourdes Georgina Iglesias-Andreu, Esteban Elías Escobar-Hernández, Mauricio Luna-Rodríguez
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-017-3632-7

Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats
Cited by: 39
Author(s): Claude Kwe Yinda, Roland Zell, Ward Deboutte, Mark Zeller, Nádia Conceição-Neto, Elisabeth Heylen, Piet Maes, Nick J. Knowles, Stephen Mbigha Ghogomu, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-020-07092-x

Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood samples of European and Chinese origin
Cited by: 5
Author(s): Patrycja Daca-Roszak, Roman Jaksik, Julia Paczkowska, Michał Witt, Ewa Ziętkiewicz
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-3499-7

Visualization of consensus genome structure without using a reference genome
Cited by: 3
Author(s): Isao Tada, Yasuhiro Tanizawa, Masanori Arita
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-15-597

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera
Cited by: 73
Author(s): Nai-Yong Liu, Wei Xü, Alexie Papanicolaou, Shuang-Lin Dong, Alisha Anderson
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12864-018-5313-6

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-017-4316-z

Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia
Cited by: 25
Author(s): Hiroki Takahashi, Yoko Kusuya, Daisuke Hagiwara, Azusa Takahashi‐Nakaguchi, Kanae Sakai, Tohru Gonoi
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-019-6307-8

DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation
Cited by: 22
Author(s): Abdolrahman Khezri, Birgitte Narud, Else‐Berit Stenseth, Anders Johannisson, Frøydis Deinboll Myromslien, Ann Helen Gaustad, Robert Wilson, Robert Lyle, Jane M. Morrell, Elisabeth Kommisrud, Rafi Ahmad
Software Mentions: 3
Published: over 6 years ago

10.1186/s12879-020-05571-w

Pharmacist-led counselling intervention to improve antiretroviral drug adherence in Pakistan: a randomized controlled trial
Cited by: 9
Author(s): Zeenat Fatima Chatha, Usman Rashid, Sharon Olsen, Fakhar ud Din, Amjad Khan, Komal Nawaz, Siew Hua Gan, Gul Majid Khan
Software Mentions: 3
Published: over 5 years ago

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Papers Mentioning ggplot2 11,441