cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0245524

CKMT1B is a potential prognostic biomarker and associated with immune infiltration in Lower-grade glioma
Cited by: 8
Author(s): Huadi Shi, Yiyun Song, Zeqing Song, Ching‐Wen Huang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0207985

Disruption of the microbiota affects physiological and evolutionary aspects of insecticide resistance in the German cockroach, an important urban pest
Cited by: 40
Author(s): Jose E. Pietri, Connor R. Tiffany, Dangsheng Liang
Software Mentions: 3
Published: over 7 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0101777

Rapid Phenotypic and Genomic Change in Response to Therapeutic Pressure in Prostate Cancer Inferred by High Content Analysis of Single Circulating Tumor Cells
Cited by: 123
Author(s): Angel E. Dago, Asya Stepansky, Anders Carlsson, Madelyn Luttgen, Jude Kendall, Timour Baslan, Anand Kolatkar, Michael Wigler, Kelly Bethel, Mitchell E. Gross, James Hicks, Peter Kühn
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0042737

Climate and Weather Impact Timing of Emergence of Bats
Cited by: 58
Author(s): Winifred F. Frick, Phillip M. Stepanian, Jeffrey F. Kelly, Kenneth W. Howard, Charles M. Kuster, Thomas Kunz, Phillip B. Chilson
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0198554

Descriptions of self-treatment for the middle-aged and elderly in Shanxi, China
Cited by: 9
Author(s): Rui Wang, Chenjin Ma, Kun Jiang, Ming Li, Shuangge Ma
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0244252

Divergence of photosynthetic strategies amongst marine diatoms
Cited by: 16
Author(s): Nerissa L. Fisher, Douglas A. Campbell, David Hughes, Unnikrishnan Kuzhiumparambil, Kimberly H. Halsey, Peter J. Ralph, David J. Suggett
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0209535

How to build a fruit: Transcriptomics of a novel fruit type in the Brassiceae
Cited by: 4
Author(s): Shane Carey, Kerrin Mendler, Jocelyn C. Hall
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0211981

A non-linear mixed effect model for innate immune response: In vivo kinetics of endotoxin and its induction of the cytokines tumor necrosis factor alpha and interleukin-6
Cited by: 15
Author(s): Anders Thorsted, Salim Bouchène, Eva Tano, Markus Castegren, Miklós Lipcsey, Jan Sjölin, Mats O. Karlsson, Lena E. Friberg, Elisabet I. Nielsen
Software Mentions: 3
Published: over 7 years ago

10.18632/aging.202410

Systems pharmacology dissection of Epimedium targeting tumor microenvironment to enhance cytotoxic T lymphocyte responses in lung cancer
Cited by: 11
Author(s): Chao Huang, Zhihua Li, Jinglin Zhu, Xuetong Chen, Yuanyuan Hao, Ruijie Yang, Ruifei Huang, Jun Zhou, Zhenzhong Wang, Wei Xiao, Chunli Zheng, Yonghua Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0149975

Host Plant Use by the Invasive Halyomorpha halys (Stål) on Woody Ornamental Trees and Shrubs
Cited by: 75
Author(s): Erik J. Bergmann, P. Dilip Venugopal, Holly M. Martinson, Michael J. Raupp, Paula M. Shrewsbury
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0251891

Testing of four-sample pools offers resource optimization without compromising diagnostic performance of real time reverse transcriptase-PCR assay for COVID-19
Cited by: 5
Author(s): Anirudh Singh, Ram Kumar Nema, Ankur Joshi, Prem Shankar, Sudheer Gupta, Abhishek Yadav, Shashwati Nema, Bijina J. Mathew, Arti Shrivas, Chitra Patankar, Arun Raghuwanshi, Ritu Pandey, Ranu Tripathi, Kudsia Ansari, Kuldeep Singh, Jogender Yadav, Debasis Biswas, Sarman Singh
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0239718

The Lichtenberg Keilmesser - it’s all about the angle
Cited by: 19
Author(s): Marcel Weiß
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0235448

Prevalence of depressive symptoms among nurses in China: A systematic review and meta-analysis
Cited by: 31
Author(s): Nanzhen Xie, Qin Yan, Taiwu Wang, Ying Zeng, Xia Deng, Li Guan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0053656

Methyl Fluoride Affects Methanogenesis Rather than Community Composition of Methanogenic Archaea in a Rice Field Soil
Cited by: 16
Author(s): Anne Daebeler, Martina Gansen, Peter Frenzel
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0163482

Using a Control to Better Understand Phyllosphere Microbiota
Cited by: 44
Author(s): Andrea Ottesen, S. Gorham, Elizabeth Reed, Michael J. Newell, Padmini Ramachandran, Travis Canida, Marc W. Allard, Peter W. Evans, Eric W. Brown, James R. White
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-021-98890-0

Analysis of body condition indices reveals different ecotypes of the Antillean manatee
Cited by: 8
Author(s): Delma Nataly Castelblanco‐Martínez, Daniel H. Slone, Sarah Landeo-Yauri, Eric A. Ramos, Anmari Álvarez-Alemán, Fernanda Löffer Niemeyer Attademo, Cathy A. Beck, Robert K. Bonde, Susan M. Butler, Lesly J. Cabrias‐Contreras, Dalila Caicedo‐Herrera, Jamal A. Galves, Isabel V. Gómez-Camelo, Daniel Gonzalez‐Socoloske, Darwin Jiménez-Domínguez, Fábia de Oliveira Luna, Yenyfer Moná-Sanabria, J B Morales-Vela, León David Olivera‐Gómez, Janneth Padilla-Saldívar, James A. Powell, James P. Reid, Guillaume Rieucau, Antonio A. Mignucci‐Giannoni
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0232995

76-year decline and recovery of aspen mediated by contrasting fire regimes: Long-unburned, infrequent and frequent mixed-severity wildfire
Cited by: 2
Author(s): Cerena J. Brewen, John‐Pascal Berrill, Martin W. Ritchie, Kevin Boston, Christa M. Dagley, Bobette E. Jones, Michelle Coppoletta, Coye L. Burnett
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-98951-4

Presence of distinctive microbiome in the first-pass meconium of newborn infants
Cited by: 9
Author(s): Jenni Turunen, Mysore V. Tejesvi, Niko Paalanne, Jenni Hekkala, Outi Lindgren, Mika Kaakinen, Tytti Pokka, Anna Kaisanlahti, Justus Reunanen, Terhi Tapiainen
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-98018-4

Handling of targeted amplicon sequencing data focusing on index hopping and demultiplexing using a nested metabarcoding approach in ecology
Cited by: 13
Author(s): Yasemin Guenay-Greunke, David Bohan, Michael Traugott, Corinna Wallinger
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-98519-2

Changes in microbial community phylogeny and metabolic activity along the water column uncouple at near sediment aphotic layers in fjords
Cited by: 2
Author(s): Sven P. Tobias-Hünefeldt, Stephen R. Wing, Federico Baltar, Sergio E. Morales
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0240390

Managing flowering time in Miscanthus and sugarcane to facilitate intra- and intergeneric crosses
Cited by: 9
Author(s): Hongxu Dong, Lindsay V. Clark, Xiaoli Jin, Kossonou Guillaume Anzoua, Л. В. Багмет, Pavel Chebukin, Elena Dzyubenko, N. I. Dzyubenko, Bimal Kumar Ghimire, Kweon Heo, Douglas A. Johnson, Hironori Nagano, Andrey Sabitov, Junhua Peng, Toshihiko Yamada, Ji Hye Yoo, Chang Yeon Yu, Hua Zhao, Stephen P. Long, Erik J. Sacks
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-98833-9

Developmental models of the carrion beetle Thanatophilus rugosus (Linnaeus, 1758) (Coleoptera: Silphidae)
Cited by: 3
Author(s): Santiago Montoya-Molina, Pavel Jakubec, Jarin Qubaiová, Martin Novák, Hana Šuláková, Jan Růžička
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0242685

Exploring the influence of deforestation on dengue fever incidence in the Brazilian Amazonas state
Cited by: 11
Author(s): Alexandra Kalbus, Vanderson de Souza Sampaio, Juliane Boenecke, Ralf Reintjes
Software Mentions: 3
Published: over 5 years ago

10.1107/S2059798319015730

Factors influencing estimates of coordinate error for molecular replacement
Cited by: 6
Author(s): Kaushik Hatti, Airlie J. McCoy, Robert D. Oeffner, Massimo Sammito, Randy J. Read
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-98637-x

TYROBP, TLR4 and ITGAM regulated macrophages polarization and immune checkpoints expression in osteosarcoma
Cited by: 19
Author(s): Tuo Liang, Jiarui Chen, Guoyong Xu, Zide Zhang, Jiang Xue, Huilan Zeng, Jie Jiang, Tianyou Chen, Zhaojie Qin, Hao Li, Zhen Ye, Yunfeng Nie, Chong Liu, Xinli Zhan
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0155957

Genetic and Environmental Control of Neurodevelopmental Robustness in Drosophila
Cited by: 17
Author(s): David J. Mellert, W. Ryan Williamson, Troy R. Shirangi, Gwyneth M Card, James W. Truman
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0181333

Plant species dispersed by Galapagos tortoises surf the wave of habitat suitability under anthropogenic climate change
Cited by: 24
Author(s): Diego Ellis‐Soto, Stephen Blake, Alaa Eldin Soultan, Anne Guézou, Fredy Cabrera, Stefan Lötters
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0101205

Movement-Based Estimation and Visualization of Space Use in 3D for Wildlife Ecology and Conservation
Cited by: 46
Author(s): Jeff A. Tracey, James K. Sheppard, Jun Zhu, Fuwen Wei, Ronald R. Swaisgood, Robert N. Fisher
Software Mentions: 3
Published: about 12 years ago

10.1038/s41598-021-98119-0

The importance of environmental microbes for Drosophila melanogaster during seasonal macronutrient variability
Cited by: 4
Author(s): Lucy Rebecca Davies, Volker Loeschcke, Mads Fristrup Schou, Andreas Schramm, Torsten Nygård Kristensen
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-97890-4

Probiotics maintain the gut microbiome homeostasis during Indian Antarctic expedition by ship
Cited by: 6
Author(s): Ashish Kumar Srivastava, Vishwajeet Rohil, Brij Bhushan, Malleswara Rao Eslavath, Harshita Gupta, Sunirmal Chanda, Bhuvnesh Kumar, Rajeev K. Varshney, Lilly Ganju
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-97871-7

Deep mutational scanning of the plasminogen activator inhibitor-1 functional landscape
Cited by: 7
Author(s): Zachary M. Huttinger, Laura M. Haynes, Andrew Yee, Colin A. Kretz, Matthew L. Holding, David Siemieniak, Daniel A. Lawrence, David Ginsburg
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0237717

The effect of task-irrelevant spatial contexts on 360-degree attention
Cited by: 2
Author(s): Yuki Harada, Junji Ohyama
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-97408-y

Real-time quantitation of thyroidal radioiodine uptake in thyroid disease with monitoring by a collar detection device
Cited by: 2
Author(s): Prasanna Santhanam, Lilja B. Solnes, Tanmay Nath, Jean-Paul Roussin, Daniel C. Gray, Eric Frey, George Sgouros, Paul W. Ladenson
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-97862-8

Regional heterogeneity in coral species richness and hue reveals novel global predictors of reef fish intra-family diversity
Cited by: 2
Author(s): Kieran Cox, Mackenzie B. Woods, T. E. Reimchen
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0233251

Disentangling listening effort and memory load beyond behavioural evidence: Pupillary response to listening effort during a concurrent memory task
Cited by: 10
Author(s): Yue Zhang, Alexandre Lehmann, Mickael L. D. Deroche
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0115907

High Reproducibility of Histological Characterization by Whole Virtual Slide Quantification; An Example Using Carotid Plaque Specimens
Cited by: 11
Author(s): Joyce E. P. Vrijenhoek, Bastiaan G. L. Nelissen, Evelyn Velema, Kristy Vons, Jean‐Paul P.M. de Vries, Marinus J.C. Eijkemans, Hester M. den Ruijter, Gert J. de Borst, Frans L. Moll, Gérard Pasterkamp
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-021-97128-3

The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes
Cited by: 11
Author(s): Carlos David de Santana, Lynne R. Parenti, Casey B. Dillman, Jonathan A. Coddington, Douglas Aviz Bastos, Carole C. Baldwin, Jansen Zuanon, Gislene Torrente‐Vilara, Raphaël Covain, Naércio A. Menezes, Aléssio Datovo, Tetsuya Sadõ, Masaki Miya
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0151903

Inflammatory Kidney and Liver Tissue Response to Different Hydroxyethylstarch (HES) Preparations in a Rat Model of Early Sepsis
Cited by: 6
Author(s): Ralph C. Schimmer, Martin Urner, Stefanie Voigtsberger, Christa Booy, Birgit Roth Z’graggen, Beatrice Beck‐Schimmer, Martin Schläpfer
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0250256

A biome-wide experiment to assess the effects of propagule size and treatment on the survival of Portulacaria afra (spekboom) truncheons planted to restore degraded subtropical thicket of South Africa
Cited by: 8
Author(s): Marius L. van der Vyver, Anthony Mills, Richard M. Cowling
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.25966

Online structure-based screening of purchasable approved drugs and natural compounds: retrospective examples of drug repositioning on cancer targets
Cited by: 24
Author(s): Nathalie Lagarde, Julien Rey, Aram G. Gyulkhandanyan, Pierre Tufféry, Maria A. Miteva, Bruno O. Villoutreix
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0209209

Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort
Cited by: 31
Author(s): Aleksander Mahnič, Maja Rupnik
Software Mentions: 3
Published: over 7 years ago

10.3390/antiox10091484

Aryl Hydrocarbon Receptor and Cysteine Redox Dynamics Underlie (Mal)adaptive Mechanisms to Chronic Intermittent Hypoxia in Kidney Cortex
Cited by: 6
Author(s): Maria João Correia, António B. Pimpão, Filipa Lopes‐Coelho, Catarina O. Sequeira, Nuno R. Coelho, Clara Gonçalves-Dias, Robert Barouki, Xavier Coumoul, Jacinta Serpa, Judit Morelló, Emília C. Monteiro, Sofia A. Pereira
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0256138

Evaluating the distribution of African swine fever virus within a feed mill environment following manufacture of inoculated feed
Cited by: 6
Author(s): C. Grace Elijah, Jessie D. Trujillo, Cassandra K Jones, Natasha N. Gaudreault, Charles R. Stark, Konner Cool, Chad B. Paulk, Taehyun Kwon, J. C. Woodworth, Igor Morozov, Carmina Gallardo, Jordan T Gebhardt, Jürgen A. Richt
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0228521

Lipidomics of human adipose tissue reveals diversity between body areas
Cited by: 10
Author(s): Naba Al-Sari, Tommi Suvitaival, Ismo Mattila, Ashfaq Ali, Linda Ahonen, Kajetan Trošt, Trine Henriksen, Flemming Pociot, Lars Ove Dragsted, Cristina Legido‐Quigley
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0213175

Reproducibility of sublingual microcirculation parameters obtained from sidestream darkfield imaging
Cited by: 13
Author(s): Luca Valerio, Ron J.G. Peters, Aeilko H. Zwinderman, Sara‐Joan Pinto‐Sietsma
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0187310

Evaluation of miRNA-196a2 and apoptosis-related target genes: ANXA1, DFFA and PDCD4 expression in gastrointestinal cancer patients: A pilot study
Cited by: 32
Author(s): Manal S. Fawzy, Eman A. Toraih, Afaf T. Ibrahiem, Hala Abdeldayem, Amany O. Mohamed, Mohamed M. Abdel-Daim
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0151872

D-Alanine-Controlled Transient Intestinal Mono-Colonization with Non-Laboratory-Adapted Commensal E. coli Strain HS
Cited by: 10
Author(s): Miguelangel Cuenca, S. Pfister, Stefanie Buschor, Firuza Bayramova, Sara B. Hernández, Felipe Cava, Erkin Kuru, Michael S. Van Nieuwenhze, Yves V. Brun, Fernanda Coelho, Siegfried Hapfelmeier
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0246135

Estimation of time of HIV seroconversion using a modified CD4 depletion model
Cited by: 4
Author(s): Viviane D. Lima, Lu Wang, Paul Sereda, Taylor McLinden, Rolando Barrios, Julio S. G. Montaner
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-96844-0

Transcriptional overlap links DNA hypomethylation with DNA hypermethylation at adjacent promoters in cancer
Cited by: 9
Author(s): Jean S. Fain, Axelle Loriot, Anna Diacofotaki, Aurélie Van Tongelen, Charles De Smet
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-96577-0

Occurrence of Mycoplasma spp. in wild birds: phylogenetic analysis and potential factors affecting distribution
Cited by: 5
Author(s): Anna Sawicka, Olimpia Kursa, Łukasz Bednarz, Grzegorz Tomczyk
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-96249-z

Identities, concentrations, and sources of pesticide exposure in pollen collected by managed bees during blueberry pollination
Cited by: 21
Author(s): Kelsey K. Graham, Meghan O. Milbrath, Yajun Zhang, Annuet Soehnlen, Nicolas Baert, Scott H. McArt, Rufus Isaacs
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0249587

Species identification based on a semi-diagnostic marker: Evaluation of a simple conchological test for distinguishing blue mussels Mytilus edulis L. and M. trossulus Gould
Cited by: 5
Author(s): Vadim Khaitov, Julia Marchenko, Marina Katolikova, Risto Väinölä, Sarah E. Kingston, David B. Carlon, М. М. Ганцевич, Petr Strelkov
Software Mentions: 3
Published: about 5 years ago

10.1038/s41421-020-00215-4

A novel multistage antiplasmodial inhibitor targeting Plasmodium falciparum histone deacetylase 1
Cited by: 20
Author(s): Zhenghui Huang, Ruoxi Li, Tongke Tang, Dazheng Ling, Manjiong Wang, Dandan Xu, Maoxin Sun, Lulu Zheng, Feng Zhu, Hui Min, Rachasak Boonhok, Yan Ding, Yang Wen, Zhong Chen, Xiaokang Li, Yuxi Chen, Taiping Liu, Jiping Han, Jun Miao, Qiang Fang, Yaming Cao, Yun Tang, Jie Cui, Wei Xu, Liwang Cui, Jin Zhu, Gary Wong, Jian Li, Lubin Jiang
Software Mentions: 3
Published: over 5 years ago

10.1016/j.chom.2021.03.001

The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr
Cited by: 40
Author(s): Liane Dupont, Stuart Bloor, James C Williamson, Sergio Martínez Cuesta, Raven Shah, Ana Teixeira-Silva, Adi Naamati, Edward Jd Greenwood, Stefan G. Sarafianos, Nicholas J Matheson, Paul J. Lehner
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-95909-4

Identification of genes, pathways and transcription factor-miRNA-target gene networks and experimental verification in venous thromboembolism
Cited by: 3
Author(s): Yiming Su, Qiyi Li, Zhiyong Zheng, Xiaomin Wei, Peiyong Hou
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.25754

Viral DNA integration and methylation of human papillomavirus type 16 in high-grade oral epithelial dysplasia and head and neck squamous cell carcinoma
Cited by: 12
Author(s): Sujita Khanal, Brian S. Shumway, Maryam Zahin, Rebecca Redman, John Strickley, Patrick J. Trainor, N. Shesh, Shin-je Ghim, A. Bennett Jenson, Joongho Joh
Software Mentions: 3
Published: about 8 years ago

10.1016/j.celrep.2018.12.002

Mechanisms of Tumor-Induced Lymphovascular Niche Formation in Draining Lymph Nodes
Cited by: 54
Author(s): Catharina D. Commerford, Lothar C. Dieterich, Yuliang He, Tanja Hell, Javier A. Montoya-Zegarra, Simon Flyvbjerg Noerrelykke, Erica Russo, Martin Röcken, Michael Detmar
Software Mentions: 3
Published: over 7 years ago

10.1016/j.celrep.2018.06.003

Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development
Cited by: 115
Author(s): Lucas J.T. Kaaij, Robin H. van der Weide, René F. Ketting, Elzo de Wit
Software Mentions: 3
Published: about 8 years ago

10.1016/j.xcrm.2021.100383

Regorafenib plus toripalimab in patients with metastatic colorectal cancer: a phase Ib/II clinical trial and gut microbiome analysis
Cited by: 45
Author(s): Feng Wang, Ming-Ming He, Yonghong Yao, Xia Zhao, Zhiqiang Wang, Ying Jin, Hongyu Luo, Jibin Li, Fenghua Wang, Miaozhen Qiu, Zhi-Da Lv, De-Shen Wang, Yuhong Li, Dongsheng Zhang, Rui‐Hua Xu
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.xcrm.2020.100146

Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons
Cited by: 22
Author(s): Nils Rother, Cansu Yanginlar, R.G.H. Lindeboom, Siroon Bekkering, Mandy M. T. van Leent, Baranca Buijsers, Inge Jonkman, Mark de Graaf, Marijke P Baltissen, Lieke A. Lamers, Niels P. Riksen, Zahi A. Fayad, Willem J. M. Mulder, Luuk B. Hilbrands, Leo A. B. Joosten, Mihai G. Netea, Michiel Vermeulen, Johan van der Vlag, Raphaël Duivenvoorden
Software Mentions: 3
Published: over 5 years ago

10.1016/j.crmeth.2021.100008

Double-jeopardy: scRNA-seq doublet/multiplet detection using multi-omic profiling
Cited by: 3
Author(s): Bo Sun, Emmanuel Bugarín-Estrada, Lauren Overend, Catherine Elizabeth Walker, Felicia Anna Tucci, Rachael Bashford-Rogers
Software Mentions: 3
Published: over 5 years ago

10.1016/j.cels.2020.03.001

Codon Usage and Splicing Jointly Influence mRNA Localization
Cited by: 52
Author(s): Christine Mordstein, Rosina Savisaar, Robert S. Young, Jeanne Bazile, Lana Talmane, Juliet Luft, Michael A. Liss, Martin S. Taylor, Laurence D. Hurst, Grzegorz Kudla
Software Mentions: 3
Published: over 6 years ago

10.1128/AEM.02164-18

Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry
Cited by: 25
Author(s): Laura Zinke, Clemens Glombitza, John Bird, Hans Røy, Bo Barker Jørgensen, Karen G. Lloyd, Jan P. Amend, Brandi Kiel Reese
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-021-81780-w

The consequences of COVID-19 on social interactions: an online study on face covering
Cited by: 91
Author(s): Marta Calbi, Nunzio Langiulli, Francesca Ferroni, Martina Montalti, Anna Kolesnikov, Vittorio Gallese, Maria Alessandra Umiltà
Software Mentions: 3
Published: over 5 years ago

10.1128/AEM.02851-18

High Genetic Potential for Proteolytic Decomposition in Northern Peatland Ecosystems
Cited by: 4
Author(s): Emily B. Graham, Fan Yang, Sheryl Bell, Kirsten Hofmockel
Software Mentions: 3
Published: over 7 years ago

10.3390/cells10010137

Single-Cell Profiling of Coding and Noncoding Genes in Human Dopamine Neuron Differentiation
Cited by: 7
Author(s): Fredrik Nilsson, Petter Storm, Edoardo Sozzi, David Gil, Marcella Birtele, Yogita Sharma, Malin Parmar, Alessandro Fiorenzano
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202636

Identification and validation of a two-gene metabolic signature for survival prediction in patients with kidney renal clear cell carcinoma
Cited by: 6
Author(s): Xudong Guo, Zhuolun Sun, Shaobo Jiang, Xunbo Jin, Hanbo Wang
Software Mentions: 3
Published: over 5 years ago

10.3390/cells10092395

Assigning Co-Regulated Human Genes and Regulatory Gene Clusters
Cited by: 4
Author(s): Tobias Strunz, Martin Kellner, Christina Kiel, Bernhard H. F. Weber
Software Mentions: 3
Published: almost 5 years ago

10.3390/cells9081828

Gene Expression Clustering and Selected Head and Neck Cancer Gene Signatures Highlight Risk Probability Differences in Oral Premalignant Lesions
Cited by: 12
Author(s): Andrea Carenzo, Mara Serena Serafini, Elisa Roca, Alberto Paderno, Davide Mattavelli, Chiara Romani, Pierre Saintigny, Senada Koljenović, Lisa Licitra, Loris De Cecco, Paolo Bossi
Software Mentions: 3
Published: about 6 years ago

10.1128/AEM.02803-20

Localization of Bacterial Communities within Gut Compartments across Cephalotes Turtle Ants
Cited by: 14
Author(s): Peter J. Flynn, Catherine L. D’Amelio, Jon G. Sanders, Jacob A. Russell, Corrie S. Moreau
Software Mentions: 3
Published: over 5 years ago

10.3390/cells9112421

The Landscape of Pseudomonas aeruginosa Membrane-Associated Proteins
Cited by: 13
Author(s): Sara Motta, Davide Vecchietti, Alessandra M. Martorana, Pietro Brunetti, Giovanni Bertoni, Alessandra Polissi, Pierluigi Mauri, Dario Di Silvestre
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.25572

Transcriptome profiling of anti-müllerian hormone treated preantral/small antral mouse ovary follicles
Cited by: 2
Author(s): Zia Ur Rehman, Faheem Ahmed Khan, Farmanullah, Hira Sajjad Talpur, Qing Liu, Shenhe Liu, Liguo Yang
Software Mentions: 3
Published: about 8 years ago

10.1093/cercor/bhaa327

The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area
Cited by: 18
Author(s): Amanda K. Tilot, Ekaterina A. Khramtsova, Dan Liang, Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Lucía Colodro‐Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Siyao Liu, Sarah M. Brotman, Paul M. Thompson, Sarah E. Medland, Fabìo Macciardi, Barbara Elaine Stranger, Lea K. Davis, Simon E. Fisher, Jason L. Stein
Software Mentions: 3
Published: over 5 years ago

10.1093/texcom/tgaa038

Shared Numerosity Representations Across Formats and Tasks Revealed with 7 Tesla fMRI: Decoding, Generalization, and Individual Differences in Behavior
Cited by: 7
Author(s): Eric D. Wilkey, Benjamin Conrad, Darren J. Yeo, Gavin R. Price
Software Mentions: 3
Published: over 6 years ago

10.1128/AEM.01007-19

Vibrio parahaemolyticus in the Chesapeake Bay: Operational In Situ Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements
Cited by: 12
Author(s): Benjamin J. K. Davis, John M. Jacobs, Benjamin F. Zaitchik, Angelo DePaola, Frank C. Curriero
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-80824-x

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism
Cited by: 14
Author(s): Lara Durán-Trío, Gabriella Fernandes-Pires, Dunja Simicic, Jocelyn Grosse, Clothilde Roux-Petronelli, Stephen J. Bruce, Pierre‐Alain Binz, Carmen Sandi, Cristina Cudalbu, Olivier Braissant
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-81000-5

EBF1 drives hallmark B cell gene expression by enabling the interaction of PAX5 with the MLL H3K4 methyltransferase complex
Cited by: 12
Author(s): Charles E. Bullerwell, Philippe Pierre Robichaud, Pierre Deprez, Andrew P. Joy, Gabriel Wajnberg, Darwin D’souza, Simi Chacko, Sébastien Fournier, Nicolas Crapoulet, David A. Barnett, Stephen M. Lewis, Rodney J. Ouellette
Software Mentions: 3
Published: over 5 years ago

10.3390/diagnostics10110879

The Dwindling Microbiota of Aerobic Vaginitis, an Inflammatory State Enriched in Pathobionts with Limited TLR Stimulation
Cited by: 18
Author(s): Eline Oerlemans, Sander Wuyts, Gert Bellen, Stijn Wittouck, Ilke De Boeck, Kateryna Ruban, Camille Nina Allonsius, Marianne F.L. van den Broek, Gilbert Donders, Sarah Lebeer
Software Mentions: 3
Published: almost 6 years ago

10.3390/diagnostics10121013

Vaginal Microbiome-Based Bacterial Signatures for Predicting the Severity of Cervical Intraepithelial Neoplasia
Cited by: 10
Author(s): Yoon Hee Lee, Gi-Ung Kang, Se Young Jeon, Setu Bazie Tagele, Huy Quang Pham, Min-Sueng Kim, Sajjad Ahmad, Da-Ryung Jung, Yeong-Jun Park, Hyung Soo Han, Jae‐Ho Shin, Gun Oh Chong
Software Mentions: 3
Published: over 5 years ago

10.3390/diagnostics11081516

Stability of OCT and OCTA in the Intensive Therapy Unit Setting
Cited by: 4
Author(s): Ella Courtie, Aditya U Kale, Benjamin T K Hui, Xiaoxuan Liu, Nicholas Capewell, Jonathan Bishop, Tony Whitehouse, Tonny Veenith, Ann Logan, Alastair K.O. Denniston, Richard J Blanch
Software Mentions: 3
Published: about 5 years ago

10.1155/2019/7049294

Identification of Key Pathways and Genes in the Orai2 Mediated Classical and Mesenchymal Subtype of Glioblastoma by Bioinformatic Analyses
Cited by: 11
Author(s): Feng Yuan, Yi Li, Hai Long, Yingshuai Wang, Yihan Yang, Tao Li, Luqing Tong, Haiwen Ma, Peidong Liu, Haolang Ming, Biao Ren, Shukun Yu, Yu Lin, Xuejun Yang
Software Mentions: 3
Published: almost 7 years ago

10.1155/2021/8849977

A Risk Signature with Autophagy-Related Long Noncoding RNAs for Predicting the Prognosis of Clear Cell Renal Cell Carcinoma: Based on the TCGA Database and Bioinformatics
Cited by: 14
Author(s): Yundong Xuan, Wei-Hao Chen, Kan Liu, Yu Tang Gao, Shidong Zuo, Baojun Wang, Xin Ma, Xu Zhang
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/8870353

Bibliometrics Analysis of Diagnostic Test Accuracy Studies of Bladder Cancer
Cited by: 8
Author(s): Yuan Zhang, Yao Xu, Shuo Li
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-80201-8

Summary of the COVID-19 epidemic and estimating the effects of emergency responses in China
Cited by: 10
Author(s): Junwen Tao, Yue Ma, Caiying Luo, Jiaqi Huang, Tao Zhang, Fei Yin
Software Mentions: 3
Published: over 5 years ago

10.1007/s10633-020-09814-8

Vision before and after scharioth macular lens implantation in patients with AMD: an electrophysiological study
Cited by: 1
Author(s): Jan Kremláček, Jana Nekolová, Markéta Středová, J. Langrová, Jana Szanyi, M Kuba, Zuzana Kubová, Vít F, Petr Voda, M Veselá, N Jirásková
Software Mentions: 3
Published: over 5 years ago

10.1016/j.ebiom.2021.103421

Maternal fecal microbiome predicts gestational age, birth weight and neonatal growth in rural Zimbabwe.
Cited by: 26
Author(s): Ethan Gough, Thaddeus J. Edens, Hyun Min Geum, Iman Baharmand, Sandeep Singh Gill, Ruairi C. Robertson, Kuda Mutasa, Robert Ntozini, Laura E. Smith, Bernard Chasekwa, Florence D Majo, Naume V. Tavengwa, Batsirai Mutasa, Freddy Francis, Lynnea Carr, Joice Tome, Rebecca J. Stoltzfus, Lawrence H. Moulton, Andrew J. Prendergast, Jean H. Humphrey, Amee R. Manges, Shine Trial Team
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-80065-y

Transcriptomics analysis for the identification of potential age-related genes and cells associated with three major urogenital cancers
Cited by: 3
Author(s): Jinlong Cao, Jianpeng Li, Xin Yang, Pan Li, Zhiqiang Yao, Dali Han, Lijun Ying, Lijie Wang, Junqiang Tian
Software Mentions: 3
Published: over 5 years ago

10.15252/embj.201899013

A temporally dynamic Foxp3 autoregulatory transcriptional circuit controls the effector Treg programme
Cited by: 36
Author(s): David Bending, Alina Paduraru, Catherine Ducker, Paz Prieto Martín, Tessa Crompton, M. Ono
Software Mentions: 3
Published: about 8 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: over 8 years ago

10.15252/embr.202050287

Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish
Cited by: 40
Author(s): Carolina García-Poyatos, Sara Cogliati, Enrique Calvo, Pablo Hernansanz-Agustín, Sandrine Lagarrigue, Ricardo Magni, Marius Botos, Xavier Langa, Francesca Amati, Jesús Vázquez, Nadia Mercader, José Antonio Enríquez
Software Mentions: 3
Published: about 6 years ago

10.15252/embr.201846193

Mutant <scp>MRPS</scp> 5 affects mitoribosomal accuracy and confers stress‐related behavioral alterations
Cited by: 23
Author(s): Rashid Akbergenov, Stefan Duscha, Ann Kristina Fritz, Reda Juskeviciene, Naoki Oishi, Karen Schmitt, Dimitri Shcherbakov, Youjin Teo, Heithem Boukari, Pietro Freihofer, Patricia Isnard-Petit, Björn Oettinghaus, Stephan Frank, Kader Thiam, Hubert Rehrauer, Éric Westhof, Jochen Schacht, Anne Eckert, David P Wolfer, Erik C. Böttger
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-79471-z

Optimal body size adjustment of L3 CT skeletal muscle area for sarcopenia assessment
Cited by: 21
Author(s): Brian A. Derstine, Sven A. Holcombe, Brian E. Ross, Nicholas Wang, Grace L. Su, Stewart C. Wang
Software Mentions: 3
Published: over 5 years ago

10.15252/embr.201947952

Expression and phase separation potential of heterochromatin proteins during early mouse development
Cited by: 11
Author(s): Manuel Guthmann, Adam Burton, Maria-Elena Torres-Padilla
Software Mentions: 3
Published: almost 7 years ago

10.1002/ehf2.13358

Derivation of an electronic frailty index for predicting short‐term mortality in heart failure: a machine learning approach
Cited by: 20
Author(s): Chengsheng Ju, Jiandong Zhou, Sharen Lee, Martin Tan, Ying Liu, George Bazoukis, Kamalan Jeevaratnam, Esther W. Chan, Ian Chi Kei Wong, Li Wei, Qingpeng Zhang, Gary Tse
Software Mentions: 3
Published: about 5 years ago

10.3332/ecancer.2019.963

The impact of cancer campaigns in Brazil: a Google Trends analysis
Cited by: 27
Author(s): Luiz Fernando Quintanilha, Laumar Neves de Souza, Daniel Soares Sanches, Rafael Sênos Demarco, Kiyoshi F. Fukutani
Software Mentions: 3
Published: almost 7 years ago

10.1007/s10393-021-01533-z

Viral Prevalence in Wild Serval Population is Driven by Season and Sex
Cited by: 0
Author(s): Daan Loock, Emilio Rendón-Franco, Samual T. Williams, Johan Van Niekerk, Lourens H. Swanepoel
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-79779-w

Anti-tumour activity of deer growing antlers and its potential applications in the treatment of malignant gliomas
Cited by: 18
Author(s): Louis Chonco, Tomás Landete‐Castillejos, Gemma Serrano‐Heras, Martina Pérez Serrano, F. Javier Pérez‐Barbería, Carlos González-Armesto, Andrés J. García, Carlos de Cabo, José M. Lorenzo, Chunyi Li, Tomás Segura
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.8025

Diel timing of nest predation changes across breeding season in a subtropical shorebird
Cited by: 4
Author(s): Martin Sládeček, Kateřina Brynychová, Esmat Elhassan, Miroslav Šálek, Veronika Janatová, Eva Vozabulová, Petr Chajma, Veronika Firlová, Lucie Pešková, Aisha Almuhery, Martin Bulla
Software Mentions: 3
Published: almost 5 years ago

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Papers Mentioning ggplot2 11,441