cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12864-018-5168-x

Evaluation of whole exome sequencing as an alternative to BeadChip and whole genome sequencing in human population genetic analysis
Cited by: 8
Author(s): Zoltán Maróti, Zsolt Boldogkői, Dóra Tombácz, M Snyder, Tibor Kalmár
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-4751-5

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast
Cited by: 33
Author(s): Cene Gostinčar, Jason E. Stajich, Jerneja Zupančič, Polona Zalar, Nina Gunde‐Cimerman
Software Mentions: 3
Published: about 8 years ago

10.15252/embj.201899013

A temporally dynamic Foxp3 autoregulatory transcriptional circuit controls the effector Treg programme
Cited by: 36
Author(s): David Bending, Alina Paduraru, Catherine Ducker, Paz Prieto Martín, Tessa Crompton, M. Ono
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-016-3257-2

MetaTopics: an integration tool to analyze microbial community profile by topic model
Cited by: 15
Author(s): Jifang Yan, Guohui Chuai, Tao Qi, Fangyang Shao, Chi Zhou, Chenyu Zhu, Jing Yang, Yifei Yu, Cong Shi, Kang Ning, Yuan He, Qi Liu
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-021-07700-4

Historical genomics reveals the evolutionary mechanisms behind multiple outbreaks of the host-specific coffee wilt pathogen Fusarium xylarioides
Cited by: 8
Author(s): Lily D. Peck, Reuben W. Nowell, J. Flood, Matthew J. Ryan, Timothy G. Barraclough
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-015-1586-1

Comparative transcriptome profiling of Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses
Cited by: 61
Author(s): Peilong Sun, Yunxiang Mao, Guiyang Li, Min Cao, Fanna Kong, Lili Wang, Guoan Bi
Software Mentions: 3
Published: about 11 years ago

10.15252/embr.202050287

Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish
Cited by: 40
Author(s): Carolina García-Poyatos, Sara Cogliati, Enrique Calvo, Pablo Hernansanz-Agustín, Sandrine Lagarrigue, Ricardo Magni, Marius Botos, Xavier Langa, Francesca Amati, Jesús Vázquez, Nadia Mercader, José Antonio Enríquez
Software Mentions: 3
Published: about 6 years ago

10.15252/embr.201846193

Mutant <scp>MRPS</scp> 5 affects mitoribosomal accuracy and confers stress‐related behavioral alterations
Cited by: 23
Author(s): Rashid Akbergenov, Stefan Duscha, Ann Kristina Fritz, Reda Juskeviciene, Naoki Oishi, Karen Schmitt, Dimitri Shcherbakov, Youjin Teo, Heithem Boukari, Pietro Freihofer, Patricia Isnard-Petit, Björn Oettinghaus, Stephan Frank, Kader Thiam, Hubert Rehrauer, Éric Westhof, Jochen Schacht, Anne Eckert, David P Wolfer, Erik C. Böttger
Software Mentions: 3
Published: almost 8 years ago

10.15252/embr.201947952

Expression and phase separation potential of heterochromatin proteins during early mouse development
Cited by: 11
Author(s): Manuel Guthmann, Adam Burton, Maria-Elena Torres-Padilla
Software Mentions: 3
Published: over 6 years ago

10.1002/ehf2.13358

Derivation of an electronic frailty index for predicting short‐term mortality in heart failure: a machine learning approach
Cited by: 20
Author(s): Chengsheng Ju, Jiandong Zhou, Sharen Lee, Martin Tan, Ying Liu, George Bazoukis, Kamalan Jeevaratnam, Esther W. Chan, Ian Chi Kei Wong, Li Wei, Qingpeng Zhang, Gary Tse
Software Mentions: 3
Published: about 5 years ago

10.3332/ecancer.2019.963

The impact of cancer campaigns in Brazil: a Google Trends analysis
Cited by: 27
Author(s): Luiz Fernando Quintanilha, Laumar Neves de Souza, Daniel Soares Sanches, Rafael Sênos Demarco, Kiyoshi F. Fukutani
Software Mentions: 3
Published: almost 7 years ago

10.1007/s10393-021-01533-z

Viral Prevalence in Wild Serval Population is Driven by Season and Sex
Cited by: 0
Author(s): Daan Loock, Emilio Rendón-Franco, Samual T. Williams, Johan Van Niekerk, Lourens H. Swanepoel
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.8025

Diel timing of nest predation changes across breeding season in a subtropical shorebird
Cited by: 4
Author(s): Martin Sládeček, Kateřina Brynychová, Esmat Elhassan, Miroslav Šálek, Veronika Janatová, Eva Vozabulová, Petr Chajma, Veronika Firlová, Lucie Pešková, Aisha Almuhery, Martin Bulla
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-020-06925-z

Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing
Cited by: 9
Author(s): Jie Cheng, Huangqing Zhao, Ningbo Chen, Xiukai Cao, Quratulain Hanif, Li Pi, Linyong Hu, Buren Chaogetu, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Hong Chen
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.4534

Sensory deficiencies affect resource selection and associational effects at two spatial scales
Cited by: 7
Author(s): Thomas A. Verschut, Brian D. Inouye, Peter A. Hambäck
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.57000

Subcellular sorting of neuregulins controls the assembly of excitatory-inhibitory cortical circuits
Cited by: 18
Author(s): David Exposito-Alonso, Catarina Osório, C. Bernard, Sandra Pascual-García, Isabel del Pino, Òscar Marín, Beatriz Rico
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.5379

Contrasting seasonal and spatial distribution of native and invasive Codium seaweed revealed by targeting species‐specific eDNA
Cited by: 12
Author(s): Teja Petra Muha, Roberta Skukan, Yaisel J. Borrell, José Rico, Carlos García de Leániz, Eva García‐Vázquez, Sofía Consuegra
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.5665

Tree species identity determines wood decomposition via microclimatic effects
Cited by: 30
Author(s): Felix Gottschall, Sophie Davids, Till E. Newiger‐Dous, Harald Auge, Simone Cesarz, Nico Eisenhauer
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.6814

Jumping the green wall: The use of PNA‐DNA clamps to enhance microbiome sampling depth in wildlife microbiome research
Cited by: 3
Author(s): Luis Víquez-R, Ramona Fleischer, Kerstin Wilhelm, Marco Tschapka, Simone Sommer
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.2782

Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone
Cited by: 18
Author(s): Daria Shipilina, Maksym Serbyn, В. В. Иваницкий, И. М. Марова, Niclas Backström
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.7443

Qualitative and quantitative methods show stability in patterns of Cepaea nemoralis shell polymorphism in the Pyrenees over five decades
Cited by: 3
Author(s): Daniel Ramos Gonzalez, Angus Davison
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.54928

A broad mutational target explains a fast rate of phenotypic evolution
Cited by: 11
Author(s): Fabrice Besnard, João Picão-Osório, Clément Dubois, Marie‐Anne Félix
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.7804

Fitness comparison of Plutella xylostella on original and marginal hosts using age‐stage, two‐sex life tables
Cited by: 3
Author(s): Fei‐Ying Yang, Junhui Chen, Qian‐Qian Ruan, Beibei Wang, Lu Jiao, Qing-Xuan Qiao, Weiyi He, Minsheng You
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-019-5816-9

The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation
Cited by: 19
Author(s): Guilherme Costa Baião, Daniela Schneider, Wolfgang J. Miller, Lisa Klasson
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.7940

Characterization of the abiotic drivers of abundance of nearshore Arctic fishes
Cited by: 2
Author(s): Noah S. Khalsa, Kyle P. Gatt, Trent M. Sutton, Amanda L. Kelley
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07900-y

LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data
Cited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.3766

Patterns of activity and body temperature of Aldabra giant tortoises in relation to environmental temperature
Cited by: 17
Author(s): Wilfredo Falcón, Rich P. Baxter, Samuel Furrer, Martin R. Bauert, Jean‐Michel Hatt, Gabriela Schaepman‐Strub, Arpat Özgül, Nancy Bunbury, Marcus Clauss, Dennis M. Hansen
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-017-3719-1

Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Cited by: 42
Author(s): Xiaochun Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Chen Yan, Huaming Xu, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Surong Shuai, Lin Bai, Haifeng Liu, Jideng Ma, Long Jin, Anxiang Wen, Qin Wang, Guangxiang Zhu, Meng Xie, Jiayun Wu, Tao He, Chunyu Huang, Xiang Gao, Xuewei Li
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.5758

Elucidating cryptic dynamics of Theileria communities in African buffalo using a high‐throughput sequencing informatics approach
Cited by: 18
Author(s): Caroline K. Glidden, Anson V. Koehler, Ross S. Hall, Muhammad Saeed, Mauricio J. C. Coppo, Brianna R. Beechler, Bryan Charleston, Robin B. Gasser, Anna E. Jolles, Abdul Jabbar
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.1257

Evaluating indices of body condition in two cricket species
Cited by: 34
Author(s): Clint D. Kelly, Brittany R. Tawes, Amy M. Worthington
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.6789

Morphological diversity and ecological niche divergence in goitered and sand gazelles
Cited by: 5
Author(s): Mahmoud‐Reza Hemami, R. Khosravi, Colin P. Groves, Mohsen Ahmadi
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.3757

Genotyping strategy matters when analyzing hypervariable major histocompatibility complex‐Experience from a passerine bird
Cited by: 15
Author(s): Silje L. Rekdal, Jarl Andreas Anmarkrud, Arild Johnsen, Jan T. Lifjeld
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.6330

The role of replication studies in ecology
Cited by: 29
Author(s): Hannah Fraser, Ashley Barnett, Timothy Parker, Fiona Fidler
Software Mentions: 3
Published: about 6 years ago

10.1002/ece3.4698

Insect herbivory on seedlings of rainforest trees: Effects of density and distance of conspecific and heterospecific neighbors
Cited by: 10
Author(s): Harriet Downey, Owen T. Lewis, Michael B. Bonsall, Diana Catalina Fernández, Sofia Gripenberg
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.6683

Effects of thermal and oxygen conditions during development on cell size in the common rough woodlice Porcellio scaber
Cited by: 9
Author(s): Andrzej Antoł, Anna Maria Łabęcka, Terézia Horváthová, Anna Sikorska, Natalia Szabla, Ulf Bauchinger, Jan Kozłowski, Marcin Czarnołęski
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.7975

Phylogeographic analysis delimits three evolutionary significant units of least chipmunks in North America and identifies unique genetic diversity within the imperiled Peñasco population
Cited by: 3
Author(s): Emily E. Puckett, Sean M. Murphy, Gideon S. Bradburd
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.1885

Exclusion of introduced deer increases size and seed production success in an island‐endemic plant species
Cited by: 7
Author(s): Tyler M. Dvorak, Amy E. Catalano
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-018-5197-5

Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit
Cited by: 40
Author(s): Peter A. McAtee, Lara Brian, Ben Curran, Otto van der Linden, Niels J. Nieuwenhuizen, Xiuyin Chen, Rebecca A. Henry-Kirk, Erin A. Stroud, Simona Nardozza, Jay Jayaraman, Erik H. A. Rikkerink, Cris Print, Andrew C. Allan, Matthew D. Templeton
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-020-07310-6

Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
Cited by: 23
Author(s): Shan Feng, Hongcheng Fang, Xia Liu, Yixin Dong, Qingpeng Wang, Ke Qiang Yang
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.8064

Disentangling complex genomic signals to understand population structure of an exploited, estuarine‐dependent flatfish
Cited by: 2
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, David S. Portnoy
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.6546

Unlocking the potential of historical abundance datasets to study biomass change in flying insects
Cited by: 9
Author(s): Rebecca S. Kinsella, Chris D. Thomas, Terry J. Crawford, Jane K. Hill, Peter J. Mayhew, Callum J. Macgregor
Software Mentions: 3
Published: almost 6 years ago

10.12952/journal.elementa.000064

Urban microbial ecology of a freshwater estuary of Lake Michigan
Cited by: 40
Author(s): James S. Fisher, Ryan J. Newton, Deborah K. Dila, Sandra L. McLellan
Software Mentions: 3
Published: over 11 years ago

10.3390/foods9121874

Effects of Production Region, Production Systems and Grape Type/Variety on Nutritional Quality Parameters of Table Grapes; Results from a UK Retail Survey
Cited by: 12
Author(s): Gultakin Hasanaliyeva, Eleni Chatzidimitrou, Wang Juan, Marcin Barański, Nikolaos Volakakis, Chris Seal, Eduardo Rosa, Per Ole Iversen, Vanessa Vigar, Bronwyn J. Barkla, Carlo Leifert, Leonidas Rempelos
Software Mentions: 3
Published: over 5 years ago

10.3390/foods8120641

Temporal Check-All-That-Apply (TCATA) Reveals Matrix Interaction Effects on Flavor Perception in a Model Wine Matrix
Cited by: 10
Author(s): Andrew R. Poveromo, Helene Hopfer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: about 8 years ago

10.3390/foods10071592

Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and Authenticity
Cited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnagi.2017.00249

DNA Methylation of Synaptic Genes in the Prefrontal Cortex Is Associated with Aging and Age-Related Cognitive Impairment
Cited by: 48
Author(s): Lara Ianov, Alberto Riva, Ashok Kumar, Thomas C. Foster
Software Mentions: 3
Published: almost 9 years ago

10.7554/eLife.59659

Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
Cited by: 9
Author(s): Zhonghao Deng, Courtney Ng, Kenzo Inoue, Ziyu Chen, Yuhan Xia, Xiaoyu Hu, Matthew B. Greenblatt, Alessandra B. Pernis, Baohong Zhao
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.49555

Decreasing human body temperature in the United States since the Industrial Revolution
Cited by: 90
Author(s): Myroslava Protsiv, Catherine Ley, Joanna Lankester, Trevor Hastie, Julie Parsonnet
Software Mentions: 3
Published: over 6 years ago

10.3389/fnbeh.2017.00219

Community Violence Exposure and Conduct Problems in Children and Adolescents with Conduct Disorder and Healthy Controls
Cited by: 25
Author(s): Linda Kersten, Noortje Vriends, Martin Steppan, Nora Maria Raschle, Martin Praetzlich, Helena Oldenhof, Robert Vermeiren, Lucres M. C. Jansen, Kathrin Ackermann, Anka Bernhard, Anne Martinelli, Karen González-Madruga, Ignazio Puzzo, Anita M. Wells, Jack C. Rogers, Roberta Clanton, Rosalind Baker, Liam Grisley, Sarah Baumann, Malou Gundlach, Gregor Kohls, Miguel Ángel González‐Torres, Eva Sesma-Pardo, Roberta Dochnal, Helen Lazaratou, Zacharias Kalogerakis, Aitana Bigorra, Areti Smaragdi, Réka Siklósi, Dimitris Dikeos, Amaia Hervás, Aranzazu Fernández‐Rivas, Stéphane A. De Brito, Kerstin Konrad, Beate Herpertz‐Dahlmann, Graeme Fairchild, Christine M. Freitag, Arne Popma, Meinhard Kieser, Christina Stadler
Software Mentions: 3
Published: over 8 years ago

10.3389/fbioe.2020.00176

MicroRNAs Associated With Colon Cancer: New Potential Prognostic Markers and Targets for Therapy
Cited by: 25
Author(s): Junfeng Zhu, Ying Xü, Shanshan Liu, Qiao Li, Jianqiang Sun, Qi Zhao
Software Mentions: 3
Published: over 6 years ago

10.3389/fbioe.2020.604793

Combinations of PCR and Isothermal Amplification Techniques Are Suitable for Fast and Sensitive Detection of SARS-CoV-2 Viral RNA
Cited by: 18
Author(s): Dmitriy A Varlamov, Konstantin A. Blagodatskikh, Evgeniya V. Smirnova, V. M. Kramarov, Konstantin B. Ignatov
Software Mentions: 3
Published: over 5 years ago

10.3389/fbioe.2020.00192

Microbial Community Redundancy and Resilience Underpins High-Rate Anaerobic Treatment of Dairy-Processing Wastewater at Ambient Temperatures
Cited by: 20
Author(s): Lara M. Paulo, Juan Castilla-Archilla, Javier Ramiro-García, José Antonio Escamez-Picón, Dermot Hughes, Thérèse Mahony, Michael J. Murray, Paul Wilmes, Vincent O’Flaherty
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-017-4385-z

Transcriptional effects of a positive feedback circuit in Drosophila melanogaster
Cited by: 5
Author(s): Jarosław Bryk, R. Guy Reeves, Floyd A. Reed, Jai A. Denton
Software Mentions: 3
Published: over 8 years ago

10.3389/fcvm.2018.00030

Postnatal and Adult Aortic Heart Valves Have Distinctive Transcriptional Profiles Associated With Valve Tissue Growth and Maintenance Respectively
Cited by: 10
Author(s): Emily Nordquist, Stephanie LaHaye, Casey Nagel, Joy Lincoln
Software Mentions: 3
Published: about 8 years ago

10.3389/fcvm.2020.597932

Expression Profiles of Circular RNA in Human Atrial Fibrillation With Valvular Heart Diseases
Cited by: 13
Author(s): Xiyu Zhu, Xingming Tang, Hoshun Chong, Hailong Cao, Fudong Fan, Jun Pan, Dongjin Wang, Qing Zhou
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5167-y

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents
Cited by: 13
Author(s): Audrey Segura, Marine Bertoni, Pauline Auffret, Christophe Klopp, Olivier Bouchez, Clémence Genthon, Alexandra Durand, Yolande Bertin, Evelyne Forano
Software Mentions: 3
Published: over 7 years ago

10.3389/fcell.2021.675411

Oncostatin M Maintains Naïve Pluripotency of mESCs by Tetraploid Embryo Complementation (TEC) Assay
Cited by: 0
Author(s): Xiaoying Ye, Chenglei Tian, Linlin Liu, Guofeng Feng, Kairang Jin, Haiying Wang, Jiyu Chen
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-015-1617-y

High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse
Cited by: 5
Author(s): Kevin Mäder, Leah Rae Donahue, Ralph Müller, Marco Stampanoni
Software Mentions: 3
Published: almost 11 years ago

10.3389/fcell.2021.694769

Comparison of Genome-Wide DNA Methylation Profiles of Human Fetal Tissues Conceived by in vitro Fertilization and Natural Conception
Cited by: 4
Author(s): Ye Liu, Xinzhu Li, Songchang Chen, Li Wang, Ya‐Jing Tan, Xiaocui Li, Lin Tang, Junyu Zhang, Dandan Wu, Yanting Wu, Xinmei Liu, Yimin Zhu, Jian‐Zhong Sheng, Jiexue Pan, Li Jin, He‐Feng Huang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fcell.2021.716760

Changes in the Gut Microbiome Contribute to the Development of Behcet’s Disease via Adjuvant Effects
Cited by: 8
Author(s): Qingfeng Wang, Shenglan Yi, Guannan Su, Ziyu Du, Pan S, Xinyue Huang, Qingfeng Cao, Guangjie Yuan, Aize Kijlstra, Peizeng Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07835-4

Investigating the genetic architecture of disease resilience in pigs by genome-wide association studies of complete blood count traits collected from a natural disease challenge model
Cited by: 3
Author(s): Xue Bai, Tong Yang, Austin M. Putz, Zhiquan Wang, Changxi Li, Frédéric Fortin, John C. S. Harding, Michael K. Dyck, Jack C. M. Dekkers, Catherine J. Field, Graham Plastow
Software Mentions: 3
Published: almost 5 years ago

10.3389/fcell.2020.00373

Tissue-Specific Requirement for the GINS Complex During Zebrafish Development
Cited by: 2
Author(s): Máté Varga, Kitti Csályi, István Bertyák, Dóra K. Menyhárd, Richard J. Poole, Kara L. Cerveny, Dorottya Kövesdi, Balázs L. Barátki, Hannah Rouse, Zsuzsa Vad, Thomas A. Hawkins, Heather L. Stickney, Florencia Cavodeassi, Quenten Schwarz, Rodrigo Young, Stephen W. Wilson
Software Mentions: 3
Published: about 6 years ago

10.3389/fcell.2021.663032

Phenotypically Anchored mRNA and miRNA Expression Profiling in Zebrafish Reveals Flame Retardant Chemical Toxicity Networks
Cited by: 6
Author(s): Subham Dasgupta, Cheryl L. Dunham, Lisa Truong, Michael T. Simonich, Christopher Sullivan, Robyn L Tanguay
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.00778

Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.65902

Mechanistic theory predicts the effects of temperature and humidity on inactivation of SARS-CoV-2 and other enveloped viruses
Cited by: 134
Author(s): Dylan H. Morris, Claude Kwe Yinda, Amandine Gamble, Fernando W. Rossine, Qishen Huang, Trenton Bushmaker, Robert J. Fischer, M. Jeremiah Matson, Neeltje van Doremalen, Peter J. Vikesland, Linsey C. Marr, Vincent J. Munster, James O. Lloyd‐Smith
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-015-2063-6

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Cited by: 73
Author(s): Robert M. Bowers, Alicia Clum, Hope Tice, Joanne Lim, Kanwar Pal Singh, Doina Ciobanu, Chew Yee Ngan, Jan‐Fang Cheng, Susannah G. Tringe, Tanja Woyke
Software Mentions: 3
Published: over 10 years ago

10.3389/fgene.2019.00752

Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress–Responsive Pathways in Microalga Dunaliella
Cited by: 39
Author(s): Bahman Panahi, Mohammad Frahadian, Jacob T. Dums, Mohammad Amin Hejazi
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.619056

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-016-3369-8

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Cited by: 39
Author(s): Markus Schlegel, Martin Münsterkötter, Ulrich Güldener, Rémy Bruggmann, Angelo Duò, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grünig
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2021.740167

Ancient Mitochondrial Genomes Reveal Extensive Genetic Influence of the Steppe Pastoralists in Western Xinjiang
Cited by: 6
Author(s): Chao Ning, Hou-Feng Zheng, Fan Zhang, Sihao Wu, Chunxiang Li, Yunlong Zhao, Yang Xu, Dong Wei, Yong Wu, Shizhu Gao, Jin Li, Yinqiu Cui
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.01215

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.00265

Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer
Cited by: 12
Author(s): Yan Wang, Steven Chen, Xi Rao, Yunlong Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00371

De novo Assembly and Transcriptome Characterization of Opisthopappus (Asteraceae) for Population Differentiation and Adaption
Cited by: 8
Author(s): Maofeng Chai, Shengnan Wang, Jie He, Wei Chen, Zelu Fan, Jia Li, Yiling Wang
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-019-5923-7

Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization
Cited by: 15
Author(s): Rong Ma, Juliana Rangel, Christina M. Grozinger
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2020.00411

Identification and Validation of Potential Biomarkers and Their Functions in Acute Kidney Injury
Cited by: 19
Author(s): Jianwen Chen, Yalei Chen, Alberto Olivero, Xiangmei Chen
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-019-5803-1

Expression dynamics of repetitive DNA in early human embryonic development
Cited by: 31
Author(s): Cihangir Yandım, Gökhan Karakülah
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.638555

Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome
Cited by: 9
Author(s): Huan Liu, Su-Xian Long, Shannon R. M. Pinson, Zhong Tang, Mary Lou Guerinot, David E. Salt, Fang‐Jie Zhao, Xin‐Yuan Huang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00083

Adjusting for Batch Effects in DNA Methylation Microarray Data, a Lesson Learned
Cited by: 57
Author(s): Emily Price, Wendy P. Robinson
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4845-0

Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton
Cited by: 7
Author(s): Yujuan Zhang, Chengxu Zhu, Yiran Ding, Yan Zeng, Gong‐Hua Li, Ling Yang, Jianfan Wen, Bin Chen
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2016.00169

Genetic Networks in Mouse Retinal Ganglion Cells
Cited by: 15
Author(s): Felix L Struebing, Richard K. Lee, Robert W. Williams, Eldon E. Geisert
Software Mentions: 3
Published: over 9 years ago

10.7554/eLife.09406

An internal promoter underlies the difference in disease severity between N- and C-terminal truncation mutations of Titin in zebrafish
Cited by: 83
Author(s): Jun Zou, Diana A. Tran, Mai Baalbaki, Ling Tang, Annie Poon, Angelo Pelonero, Erron W. Titus, Christiana Yuan, Chenxu Shi, Shruthi Patchava, Elizabeth Halper, Jasmine Garg, Irina Movsesyan, Chaoying Yin, Roland S. Wu, Lisa D. Wilsbacher, Jiandong Liu, Ron Hager, Shaun R. Coughlin, Martin Jinek, Clive R. Pullinger, John P. Kane, Daniel Hart, Pui Yan Kwok, Rahul C. Deo
Software Mentions: 3
Published: over 10 years ago

10.3389/fgene.2021.580190

Identification of Infertility-Associated Topologically Important Genes Using Weighted Co-expression Network Analysis
Cited by: 2
Author(s): Jingni Wu, Xiaomeng Xia, Ye Hu, Xiaoling Fang, Sandra Oršulić
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.645107

Identification of Major Loci and Candidate Genes for Meat Production-Related Traits in Broilers
Cited by: 4
Author(s): Xinting Yang, Jiahong Sun, Guiping Zhao, Wei Li, Xiaodong Tan, Maiqing Zheng, Furong Feng, Dawei Liu, Jie Wen, Ranran Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.709666

Establishment of an Endocytosis-Related Prognostic Signature for Patients With Low-Grade Glioma
Cited by: 4
Author(s): Dawei Wang, Shiguang Liu, Guangxin Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.503256

Construction and Analysis of a ceRNA Network in Cardiac Fibroblast During Fibrosis Based on in vivo and in vitro Data
Cited by: 7
Author(s): Qingyuan Gao, Haifeng Zhang, Zhi-Teng Chen, Yuewei Li, Shaohua Wang, Zheng Wen, Yong Xie, Jing-Ting Mai, Jingfeng Wang, Yangxin Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00133

Comparison of Adult Testis and Ovary MicroRNA Expression Profiles in Reeves’ Pond Turtles (Mauremys reevesii) With Temperature-Dependent Sex Determination
Cited by: 6
Author(s): Lei Xiong, Mengli Yang, Kai Zheng, Ziming Wang, Shengli Gu, Jiucui Tong, Jianjun Li, Nadar Ali Shah, Liuwang Nie
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.01062

DNA Methylation Changes Are Associated With an Incremental Ascent to High Altitude
Cited by: 20
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Jaclyn M. Goodrich, Dana C. Dolinoy, Trevor A. Day, Abigail W. Bigham, Tom D. Brutsaert
Software Mentions: 3
Published: over 6 years ago

10.1080/21623945.2021.1889815

Effects of non-vascularized adipose tissue transplantation on its genetic profile
Cited by: 1
Author(s): Jeannine Susanne Schreiter, Olga Kurow, Stefan Langer, M. Steinert, Lucas Massier
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.08490

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Cited by: 363
Author(s): Simon Roux, Steven J. Hallam, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 3
Published: almost 11 years ago

10.3389/fgene.2021.653837

Reproductive Isolation Between Taxonomically Controversial Forms of the Gray Voles (Microtus, Rodentia; Arvicolinae): Cytological Mechanisms and Taxonomical Implications
Cited by: 6
Author(s): Tatiana I Bikchurina, Fedor N. Golenishchev, Elena A. Kizilova, Ahmad Mahmoudi, Pavel M. Borodin
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.656042

Identification of Potential Signatures and Their Functions for Acute Lymphoblastic Leukemia: A Study Based on the Cancer Genome Atlas
Cited by: 10
Author(s): Weimin Wang, Chunhui Lyu, Fei Wang, Congcong Wang, Feifei Wu, Xue Li, Si-Lin Gan
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-017-4198-0

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers
Cited by: 67
Author(s): Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin Ward‐Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Mélanie Waldenberger
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2021.616469

Immune Cell Infiltration-Based Characterization of Triple-Negative Breast Cancer Predicts Prognosis and Chemotherapy Response Markers
Cited by: 10
Author(s): Yufei Lv, Dongxu Lv, Xiaoyi Lv, Ping Xing, Jianguo Zhang, Yafang Zhang
Software Mentions: 3
Published: over 5 years ago

10.1590/1413-785220162404158362

UNCEMENTED ARTHROPLASTY AFTER HIP METASTATIC DISEASE AND MULTIPLE MYELOMA
Cited by: 2
Author(s): André Mathias Baptista, Sergio Pinheiro de Souza Meirelles, Daniel César Seguel Rebolledo, Luiz Filipe Marques Correia, Olavo Pires de Camargo
Software Mentions: 3
Published: almost 10 years ago

10.3389/fnhum.2021.669902

Genome-Wide Association Study of Motor Coordination
Cited by: 7
Author(s): Hayley S. Mountford, Amanda Hill, Anna Barnett, Dianne F. Newbury
Software Mentions: 3
Published: about 5 years ago

10.3389/fnhum.2018.00054

Spatial Arrangement and Set Size Influence the Coding of Non-symbolic Quantities in the Intraparietal Sulcus
Cited by: 9
Author(s): Johannes Bloechle, Julia Huber, Elise Klein, Julia Bahnmueller, Johannes Rennig, Korbinian Moeller, Stefan Huber
Software Mentions: 3
Published: over 8 years ago

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