cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0070053

Full Transcriptome Analysis of Early Dorsoventral Patterning in Zebrafish
Cited by: 11
Author(s): Erika Fodor, Áron Zsigmond, Balázs Horváth, J. Molnár, István Nagy, Gábor Tóth, Stephen W. Wilson, Máté Varga
Software Mentions: 3
Published: almost 13 years ago

10.1002/ece3.6546

Unlocking the potential of historical abundance datasets to study biomass change in flying insects
Cited by: 9
Author(s): Rebecca S. Kinsella, Chris D. Thomas, Terry J. Crawford, Jane K. Hill, Peter J. Mayhew, Callum J. Macgregor
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/8925420

Integrated Analysis of Hub Genes and miRNAs in Dilated Cardiomyopathy
Cited by: 11
Author(s): Kai Huang, Shuyan Wen, Junhui Huang, Fangrui Wang, Liewen Pang, Yiqing Wang, Xiaotian Sun
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008603

Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence
Cited by: 5
Author(s): Tina Wagner, Lara Pérez-Martínez, René Schellhaas, Marta Barrientos-Moreno, Merve Öztürk, Félix Prado, Falk Butter, Brian Luke
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3257-2

MetaTopics: an integration tool to analyze microbial community profile by topic model
Cited by: 15
Author(s): Jifang Yan, Guohui Chuai, Tao Qi, Fangyang Shao, Chi Zhou, Chenyu Zhu, Jing Yang, Yifei Yu, Cong Shi, Kang Ning, Yuan He, Qi Liu
Software Mentions: 3
Published: over 9 years ago

10.3389/fpsyg.2021.647473

Music Listening in Times of COVID-19 Outbreak: A Brazilian Study
Cited by: 11
Author(s): Fernando Salimon Ribeiro, João Paulo Araújo Lessa, Guilherme Delmolin, Flávia H. Santos
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007829

Improving the coverage of credible sets in Bayesian genetic fine-mapping
Cited by: 30
Author(s): Anna Hutchinson, Hope Watson, Chris Wallace
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1006455

Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells
Cited by: 4
Author(s): Ernest Ho, Juan Nicolas Malagon, Abha Ahuja, Rama S. Singh, Ellen Larsen
Software Mentions: 3
Published: over 7 years ago

10.3389/fpsyg.2017.00795

Improving Assessment of the Spectrum of Reward-Related Eating: The RED-13
Cited by: 31
Author(s): Ashley E. Mason, Uku Vainik, Michael Acree, A. Janet Tomiyama, Alain Dagher, Elissa S. Epel, Frederick M. Hecht
Software Mentions: 3
Published: about 9 years ago

10.1186/s12935-021-02108-2

Identification and integrative analysis of ACLY and related gene panels associated with immune microenvironment reveal prognostic significance in hepatocellular carcinoma
Cited by: 7
Author(s): Yunfeng Xu, Ze Zhang, Da Xu, Xin Yang, Lina Zhou, Ying Zhu
Software Mentions: 3
Published: almost 5 years ago

10.12952/journal.elementa.000064

Urban microbial ecology of a freshwater estuary of Lake Michigan
Cited by: 40
Author(s): James S. Fisher, Ryan J. Newton, Deborah K. Dila, Sandra L. McLellan
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pcbi.1007892

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans
Cited by: 2
Author(s): Chadi M. Saad-Roy, Nimalan Arinaminpathy, Ned S. Wingreen, Simon A. Levin, Joshua M. Akey, Bryan T. Grenfell
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1003733

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets
Cited by: 23
Author(s): Alejandro Barrera, Ana Alastruey‐Izquierdo, Marı́a Jesús Martı́n, Isabel Cuesta, Juan Antonio Vizcaíno
Software Mentions: 3
Published: almost 12 years ago

10.3389/fcell.2020.615671

Identification of lncRNA-mRNA Regulatory Module to Explore the Pathogenesis and Prognosis of Melanoma
Cited by: 17
Author(s): Jiaqi Zhang, Hui Liu, Wenhao Zhang, Yinfang Li, Zhipeng Fan, Hua Jiang, Judong Luo
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.51851

Bioinformatics analysis of lncRNA‑associated ceRNA network in melanoma
Cited by: 8
Author(s): Yi Ding, Min Li, Tuersong Tayier, Meilin Zhang, Long Chen, Shumei Feng
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pbio.3001108

Tooth morphology elucidates shark evolution across the end-Cretaceous mass extinction
Cited by: 6
Author(s): Mohamad Bazzi, Nicolás E. Campione, Per Ahlberg, Henning Blom, Benjamin P. Kear
Software Mentions: 3
Published: almost 5 years ago

10.3389/fcell.2020.572628

DNA Methylation-Based Panel Predicts Survival of Patients With Clear Cell Renal Cell Carcinoma and Its Correlations With Genomic Metrics and Tumor Immune Cell Infiltration
Cited by: 4
Author(s): Xiaoping Li, Lingao Ju, Chen Chen, Tongzu Liu, Sheng Li, Xinghuan Wang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph18094655

Relationship of Test Positivity Rates with COVID-19 Epidemic Dynamics
Cited by: 22
Author(s): Yuki Furuse, Yura K. Ko, Kota Ninomiya, Motoi Suzuki, Hitoshi Oshitani
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pbio.1002332

A Latex Metabolite Benefits Plant Fitness under Root Herbivore Attack
Cited by: 65
Author(s): Meret Huber, Janina Epping, Christian Schulze Gronover, Julia Fricke, Zohra Aziz, Théo Brillatz, Michael Swyers, Tobias G. Köllner, Heiko Vogel, Almuth Hammerbacher, Daniella Triebwasser-Freese, Christelle Robert, Koen J. F. Verhoeven, Veronica Preite, Jonathan Gershenzon, Matthias Erb
Software Mentions: 3
Published: over 10 years ago

10.1186/s12879-020-05091-7

Live poultry market closure and avian influenza A (H7N9) infection in cities of China, 2013–2017: an ecological study
Cited by: 6
Author(s): Ying Chen, Jian Cheng, Zhiwei Xu, Wenbiao Hu, Jiahai Lu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pbio.3001101

Stress and odorant receptor feedback during a critical period after hatching regulates olfactory sensory neuron differentiation in Drosophila
Cited by: 8
Author(s): Shadi Jafari, Johan Henriksson, Hua Yan, Mattias Alenius
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2021.692517

Distinct Gene Expression Patterns of Two Heat Shock Protein 70 Members During Development, Diapause, and Temperature Stress in the Freshwater Crustacean Daphnia magna
Cited by: 3
Author(s): Luxi Chen, Rocío Gómez, Linda C. Weiss
Software Mentions: 3
Published: almost 5 years ago

10.1161/HYPERTENSIONAHA.117.09631

Biochemical Screening for Nonadherence Is Associated With Blood Pressure Reduction and Improvement in Adherence
Cited by: 120
Author(s): Pankaj Gupta, Prashanth Patel, Branislav Štrauch, Florence Lai, Artur Akbarov, Gaurav S. Gulsin, Augusta Beech, Vilma Marešová, Peter Topham, Adrian G. Stanley, H. Thurston, Paul Smith, Robert Horne, Jiří Widimský, Bernard Keavney, Anthony M. Heagerty, Nilesh J. Samani, Bryan Williams, Maciej Tomaszewski
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4751-5

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast
Cited by: 33
Author(s): Cene Gostinčar, Jason E. Stajich, Jerneja Zupančič, Polona Zalar, Nina Gunde‐Cimerman
Software Mentions: 3
Published: about 8 years ago

10.1186/s12879-020-05571-w

Pharmacist-led counselling intervention to improve antiretroviral drug adherence in Pakistan: a randomized controlled trial
Cited by: 9
Author(s): Zeenat Fatima Chatha, Usman Rashid, Sharon Olsen, Fakhar ud Din, Amjad Khan, Komal Nawaz, Siew Hua Gan, Gul Majid Khan
Software Mentions: 3
Published: over 5 years ago

10.3389/fcimb.2018.00057

Chronic Rhinosinusitis: Potential Role of Microbial Dysbiosis and Recommendations for Sampling Sites
Cited by: 64
Author(s): Elizabeth Copeland, Katherine M. Leonard, Richard L. Carney, Justin Kong, Martin Forer, Yuresh Naidoo, Brian G. Oliver, Justin R. Seymour, Stephen Woodcock, Catherine Burke, Nicholas W. Stow
Software Mentions: 3
Published: over 8 years ago

10.3389/fcimb.2021.641920

Persistent Bacterial Coinfection of a COVID-19 Patient Caused by a Genetically Adapted Pseudomonas aeruginosa Chronic Colonizer
Cited by: 44
Author(s): Jiuxin Qu, Zhao Cai, Yumei Liu, Xiangke Duan, Shuhong Han, Jihong Liu, Yuao Zhu, Zhichao Jiang, Yingdan Zhang, Chao Zhuo, Yang Liu, Yingxia Liu, Lei Liu, Liang Yang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21114131

Transcriptome Profiling Reveals Novel Candidate Genes Related to Hippocampal Dysfunction in SREBP-1c Knockout Mice
Cited by: 7
Author(s): Mary Jasmin Ang, Juhwan Kim, Sueun Lee, Sung Hoon Kim, Jong-Choon Kim, Tae‐Il Jeon, Seung‐Soon Im, Changjong Moon
Software Mentions: 3
Published: about 6 years ago

10.1093/hmg/ddz101

Evolutionary and functional analysis of RBMY1 gene copy number variation on the human Y chromosome
Cited by: 8
Author(s): Wentao Shi, Sandra Louzada, Marina Grigorova, Andrea Massaia, Elena Arciero, Laura Kibena, Xin Ge, Yuan Chen, Qasim Ayub, Olev Poolamets, Chris Tyler‐Smith, Margus Punab, Maris Laan, Fengtang Yang, Pille Hallast, Yali Xue
Software Mentions: 3
Published: about 7 years ago

10.3390/genes12091374

Identification of Long Non-Coding RNAs Involved in Porcine Fat Deposition Using Two High-Throughput Sequencing Methods
Cited by: 5
Author(s): Yibing Liu, Ying Yu, Ai Hong, Fengxia Zhang, Xitong Zhao, Huatao Liu, Yong Shi, Kai Xing, Chuduan Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fcimb.2020.00336

Distinct Skin Microbiota Imbalance and Responses to Clinical Treatment in Children With Atopic Dermatitis
Cited by: 8
Author(s): Ying Liu, Shan Wang, Wenkui Dai, Yuan Liang, Chunping Shen, Lili Li, Lei Jiao, Yawei Bian, Zhan Gao, Yinhu Li, Dongfang Li, Shuai Cheng Li, Martin J. Blaser, Yi Tang, Lin Ma
Software Mentions: 3
Published: almost 6 years ago

10.3389/fcimb.2019.00409

Gut Microbiota Dysbiosis and Increased Plasma LPS and TMAO Levels in Patients With Preeclampsia
Cited by: 81
Author(s): Jing Wang, Xunke Gu, Jing Yang, Yuan Wei, Yangyu Zhao
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pbio.3000599

A proteomic atlas of senescence-associated secretomes for aging biomarker development
Cited by: 602
Author(s): Nathan Basisty, Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao, Anja Holtz, Samah Shah, Vagisha Sharma, Luigi Ferrucci, Judith Campisi, Birgit Schilling
Software Mentions: 3
Published: over 6 years ago

10.1186/s40246-019-0254-y

Delineating significant genome-wide associations of variants with antipsychotic and antidepressant treatment response: implications for clinical pharmacogenomics
Cited by: 6
Author(s): Maria Koromina, Stefania Koutsilieri, George P. Patrinos
Software Mentions: 3
Published: over 6 years ago

10.7150/jca.39467

Prognostic role of ACTL10 in Cytogenetic Normal Acute Myeloid Leukemia
Cited by: 3
Author(s): Rui Lai, Weilong Zhang, Xue He, Xinhui Liao, Xiaoni Liu, Wei Fu, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Hongmei Jing, Weiyou Liu
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-017-3719-1

Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern
Cited by: 42
Author(s): Xiaochun Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Chen Yan, Huaming Xu, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Surong Shuai, Lin Bai, Haifeng Liu, Jideng Ma, Long Jin, Anxiang Wen, Qin Wang, Guangxiang Zhu, Meng Xie, Jiayun Wu, Tao He, Chunyu Huang, Xiang Gao, Xuewei Li
Software Mentions: 3
Published: about 9 years ago

10.1186/s12864-018-5168-x

Evaluation of whole exome sequencing as an alternative to BeadChip and whole genome sequencing in human population genetic analysis
Cited by: 8
Author(s): Zoltán Maróti, Zsolt Boldogkői, Dóra Tombácz, M Snyder, Tibor Kalmár
Software Mentions: 3
Published: over 7 years ago

10.3389/fcimb.2018.00420

Ascitic Bacterial Composition Is Associated With Clinical Outcomes in Cirrhotic Patients With Culture-Negative and Non-neutrocytic Ascites
Cited by: 11
Author(s): Yanfei Chen, Jing Guo, Ding Shi, Daiqiong Fang, Chunlei Chen, Lanjuan Li
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-016-2516-6

CTCF-mediated chromatin loops enclose inducible gene regulatory domains
Cited by: 58
Author(s): Martin Oti, Jonas Falck, Martijn A. Huynen, Huiqing Zhou
Software Mentions: 3
Published: over 10 years ago

10.7150/jca.33805

Clinical prognostic implications of EPB41L4A expression in multiple myeloma
Cited by: 5
Author(s): Weilong Zhang, Rui Lai, Xue He, Xiaoni Liu, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Weiyou Liu, Hongmei Jing
Software Mentions: 3
Published: over 6 years ago

10.7150/jca.35801

Identification of a six-lncRNA signature based on a competing endogenous RNA network for predicting the risk of tumour recurrence in bladder cancer patients
Cited by: 8
Author(s): Danfeng Zhao, Qiang Peng, Lu Wang, Cong Li, Yulin Lv, Yong Liu, Zhichao Wang, Ruizhe Fang, Jiaqi Wang, Zhongqing Liu, Wanhai Xu
Software Mentions: 3
Published: over 6 years ago

10.1186/s40246-021-00318-3

Genetic-variant hotspots and hotspot clusters in the human genome facilitating adaptation while increasing instability
Cited by: 6
Author(s): Xi Long, Hong Xue
Software Mentions: 3
Published: over 5 years ago

10.3389/fcimb.2020.617998

High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondii
Cited by: 9
Author(s): Benedikt M. Markus, Benjamin S. Waldman, Hernan Lorenzi, Sebastian Lourido
Software Mentions: 3
Published: over 5 years ago

10.3390/plants8100424

Climatic Niche Shift during Azolla filiculoides Invasion and Its Potential Distribution under Future Scenarios
Cited by: 9
Author(s): Argantonio Rodríguez‐Merino, Rocío Fernández‐Zamudio, Pablo García‐Murillo, Jesús Muñoz
Software Mentions: 3
Published: over 6 years ago

10.3390/ijerph18179081

Cognitive Remediation in Virtual Environments for Patients with Schizophrenia and Major Depressive Disorder: A Feasibility Study
Cited by: 1
Author(s): Adéla Plechatá, Lukáš Hejtmánek, Martina Bednářová, Iveta Fajnerová
Software Mentions: 3
Published: almost 5 years ago

10.1002/cam4.3846

MX2 mediates establishment of interferon response profile, regulates XAF1, and can sensitize melanoma cells to targeted therapy
Cited by: 5
Author(s): Marina Juraleviciute, Jérémie Nsengimana, Julia Newton‐Bishop, Gert J. Hendriks, Ana Slipicevic
Software Mentions: 3
Published: over 5 years ago

10.3390/plants9121687

Genome Size Evolution and Dynamics in Iris, with Special Focus on the Section Oncocyclus
Cited by: 2
Author(s): Nour Abdel Samad, Oriane Hidalgo, Élie Saliba, Sonja Siljak‐Yakovlev, Kit Strange, Ilia J. Leitch, Magda Bou Dagher Kharrat
Software Mentions: 3
Published: over 5 years ago

10.3389/fendo.2021.721812

A Novel Diagnostic Predictive Model for Idiopathic Short Stature in Children
Cited by: 4
Author(s): Jinghong Yuan, Du Zhi, Zhiwen Wu, Yanqin Yang, Xigao Cheng, Xijuan Liu, Jingyu Jia
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07900-y

LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data
Cited by: 2
Author(s): Yanan Ren, Ting You Wang, Leah C. Anderton, Qi Cao, Rendong Yang
Software Mentions: 3
Published: almost 5 years ago

10.1093/gbe/evab064

The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
Cited by: 8
Author(s): Jesper Boman, Carina F. Mugal, Niclas Backström
Software Mentions: 3
Published: over 5 years ago

10.3390/plants10040809

Shade Avoidance and Light Foraging of a Clonal Woody Species, Pachysandra terminalis
Cited by: 5
Author(s): Risa Iwabe, Kohei Koyama, Riko Komamura
Software Mentions: 3
Published: about 5 years ago

10.3390/plants10071291

A Transcriptional Analysis of the Genes Involved in the Ascorbic Acid Pathways Based on a Comparison of the Juice and Leaves of Navel and Anthocyanin-Rich Sweet Orange Varieties
Cited by: 7
Author(s): P. Caruso, Mario Russo, Marco Caruso, Mario Di Guardo, Giuseppe Russo, Simona Fabroni, Nicolina Timpanaro, Concetta Licciardello
Software Mentions: 3
Published: about 5 years ago

10.2196/16159

Maintaining Physical Activity Level Through Team-Based Walking With a Mobile Health Intervention: Cross-Sectional Observational Study
Cited by: 3
Author(s): Yuri Hamamatsu, Hiroo Ide, Makoto Kakinuma, Yuji Furui
Software Mentions: 3
Published: almost 6 years ago

10.3390/plants9050592

From Genome to Field—Observation of the Multimodal Nematicidal and Plant Growth-Promoting Effects of Bacillus firmus I-1582 on Tomatoes Using Hyperspectral Remote Sensing
Cited by: 16
Author(s): Nik Susič, Uroš Žibrat, Lovro Sinkovič, Andrej Vončina, Jaka Razinger, M. Knapič, Aleš Sedlar, Saša Širca, Barbara Gerič Stare
Software Mentions: 3
Published: about 6 years ago

10.3390/plants10040798

Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron
Cited by: 2
Author(s): Reunreudee Kaewcheenchai, Phanchita Vejchasarn, Kousuke Hanada, Kazumasa Shirai, Chatchawan Jantasuriyarat, Piyada Juntawong
Software Mentions: 3
Published: about 5 years ago

10.1002/cam4.961

Nonpromoter methylation of the CDKN2A gene with active transcription is associated with improved locoregional control in laryngeal squamous cell carcinoma
Cited by: 12
Author(s): Miriam M. Ben-Dayan, Thomas J. Ow, Thomas J. Belbin, Joshua Wetzler, Richard V. Smith, Geoffrey Childs, Brenda Diergaarde, D. Neil Hayes, Jennifer R. Grandis, Michael B. Prystowsky, Nicolas F. Schlecht
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.7970

Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Cited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: over 6 years ago

10.1002/cam4.1905

Construction of immune-related risk signature for renal papillary cell carcinoma
Cited by: 42
Author(s): Zhongyu Wang, Qian Song, Zaixing Yang, Jianing Chen, Jun Shang, Wen Ju
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.761

Concordance and discordance of sequence survey methods for molecular epidemiology
Cited by: 5
Author(s): Eduardo Castro-Nallar, Nur A. Hasan, Thomas A. Cebula, Rita R. Colwell, Richard A. Robison, W. Evan Johnson, Keith A. Crandall
Software Mentions: 3
Published: over 11 years ago

10.1093/gbe/evt189

The Complex Intron Landscape and Massive Intron Invasion in a Picoeukaryote Provides Insights into Intron Evolution
Cited by: 27
Author(s): Bram Verhelst, Yves Van de Peer, Pierre Rouzé
Software Mentions: 3
Published: over 12 years ago

10.3390/ijms21238934

Identification and Characterization of PLATZ Transcription Factors in Wheat
Cited by: 20
Author(s): Yuxin Fu, Mengping Cheng, Maolian Li, Xiaojiang Guo, Yongrui Wu, Jirui Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2014.00250

Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index
Cited by: 60
Author(s): Robert M. Cronin, Julie R. Field, Yuki Bradford, Christian M. Shaffer, Robert J. Carroll, Jonathan D. Mosley, Lisa Bastarache, Todd L. Edwards, Scott J. Hebbring, Simon Lin, Lucia A. Hindorff, Paul K. Crane, Sarah A. Pendergrass, Marylyn D. Ritchie, Dana C. Crawford, Jyotishman Pathak, Suzette J. Bielinski, David Carrell, David R. Crosslin, David H. Ledbetter, David J. Carey, Gerard Tromp, Marc S. Williams, Eric B. Larson, Gail P. Jarvik, Peggy L. Peissig, Murray H. Brilliant, Catherine A. McCarty, Christopher G. Chute, Iftikhar J. Kullo, Erwin Böttinger, Rex L. Chisholm, Maureen E. Smith, Dan M. Roden, Joshua C. Denny
Software Mentions: 3
Published: almost 12 years ago

10.3389/fgene.2021.639905

Association Between Environmental Factors and Asthma Using Mendelian Randomization: Increased Effect of Body Mass Index on Adult-Onset Moderate-to-Severe Asthma Subtypes
Cited by: 6
Author(s): Tae‐Woong Ha, Hae-Un Jung, Dong Jun Kim, Eun Ju Baek, Wonjun Lee, Ji Eun Lim, Han-Kyul Kim, Ji‐One Kang, Bermseok Oh
Software Mentions: 3
Published: about 5 years ago

10.1590/1678-4685-GMB-2018-0351

A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines
Cited by: 1
Author(s): Gabriela P. Branco, Renan Valieris, Lucas Venezian Povoa, Luíza Ferreira de Araújo, Gustavo Ribeiro Fernandes, Jorge Estefano Santana de Souza, María Galli de Amorim, Elisa Napolitano Ferreira, Israel Tojal da Silva, Diana Noronha Nunes, Emmanuel Dias-Neto
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.634195

A Novel Framework to Predict Breast Cancer Prognosis Using Immune-Associated LncRNAs
Cited by: 8
Author(s): Zhijian Huang, Xiao Chen, Fushou Zhang, Zhifeng Zhou, Liang Yu, Changsheng Ye, Weiwei Huang, Nani Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.589076

Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.11912

Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation
Cited by: 5
Author(s): Gita G. Paskerova, Tatiana S. Miroliubova, Andrea Bardůnek Valigurová, Jan Janouškovec, Magdaléna Kováčiková, Andrei Diakin, Yuliya Y. Sokolova, Kirill V. Mikhailov, Vladimir V. Aleoshin, Timur G. Simdyanov
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-019-6307-8

DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation
Cited by: 22
Author(s): Abdolrahman Khezri, Birgitte Narud, Else‐Berit Stenseth, Anders Johannisson, Frøydis Deinboll Myromslien, Ann Helen Gaustad, Robert Wilson, Robert Lyle, Jane M. Morrell, Elisabeth Kommisrud, Rafi Ahmad
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.00660

Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)
Cited by: 12
Author(s): Jian Xu, Yanliang Jiang, Zixia Zhao, Hanyuan Zhang, Wenzhu Peng, Jianxin Feng, Chuanju Dong, Baohua Chen, Ruyu Tai, Peng Xu
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2020.566928

A Five-Gene-Pair-Based Prognostic Signature for Predicting the Relapse Risk of Early Stage ER+ Breast Cancer
Cited by: 2
Author(s): Na Li, Hao Cai, Kai Song, You Guo, Qirui Liang, Jiahui Zhang, Rou Chen, Jing Li, Xianlong Wang, Zheng Guo
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.10884

Predicting lung adenocarcinoma disease progression using methylation-correlated blocks and ensemble machine learning classifiers
Cited by: 5
Author(s): Xin Yu, Qian Yang, Dong Wang, Zhaoyang Li, Nianhang Chen, De-Xin Kong
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8359

A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.)
Cited by: 10
Author(s): Fakiha Ashraf, Muhammad Aleem Ashraf, Xiaowen Hu, Shuzhen Zhang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.671585

Upregulation of LIMK1 Is Correlated With Poor Prognosis and Immune Infiltrates in Lung Adenocarcinoma
Cited by: 12
Author(s): Gui-Fu Lu, Ying Zhou, Chenxi Zhang, Yu Zhang
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.7791

Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)
Cited by: 4
Author(s): Anton A. Ermakov, Aleksandr Bobrovskikh, У. С. Зубаирова, Dmitrii K. Konstantinov, А. В. Дорошков
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.00922

Sperm DNA Hypomethylation Proximal to Reproduction Pathway Genes in Maturing Elite Norwegian Red Bulls
Cited by: 8
Author(s): Abdolrahman Khezri, Birgitte Narud, Else‐Berit Stenseth, Teklu Tewoldebrhan Zeremichael, Frøydis Deinboll Myromslien, Robert Wilson, Rafi Ahmad, Elisabeth Kommisrud
Software Mentions: 3
Published: almost 6 years ago

10.1002/jcsm.12099

Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness
Cited by: 48
Author(s): Roland W. J. Hangelbroek, Parastoo Fazelzadeh, Michael Tieland, Mark V. Boekschoten, Guido Hooiveld, John van Duynhoven, James A. Timmons, Lex B. Verdijk, Lisette C. P. G. M. de Groot, Luc J. C. van Loon, Michael Müller
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.9611

An analysis of the perceived causes leading to task-failure in resistance-exercises
Cited by: 6
Author(s): Aviv Emanuel, Isaac Isur Rozen Smukas, Israel Halperin
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2018.00263

A Multilocus Approach to Understanding Historical and Contemporary Demography of the Keystone Floodplain Species Colossoma macropomum (Teleostei: Characiformes)
Cited by: 9
Author(s): Maria da Conceição Freitas Santos, Tomas Hrbek, Izeni Pires Farias
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-07310-6

Genome-wide identification and characterization of long non-coding RNAs conferring resistance to Colletotrichum gloeosporioides in walnut (Juglans regia)
Cited by: 23
Author(s): Shan Feng, Hongcheng Fang, Xia Liu, Yixin Dong, Qingpeng Wang, Ke Qiang Yang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12936-021-03794-z

Pyriproxyfen-treated bed nets reduce reproductive fitness and longevity of pyrethroid-resistant Anopheles gambiae under laboratory and field conditions
Cited by: 10
Author(s): Nelson Grisales, Rosemary Susan Lees, James Maas, John C. Morgan, Dimitri W. Wangrawa, Wamdaogo Moussa Guelbéogo, N’Falé Sagnon, Steve W. Lindsay, Philip McCall, Hilary Ranson
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.175

Data reuse and the open data citation advantage
Cited by: 358
Author(s): Heather Piwowar
Software Mentions: 3
Published: over 12 years ago

10.1038/s41598-021-89445-4

Novel vocalizations are understood across cultures
Cited by: 17
Author(s): Aleksandra Ćwiek, Susanne Fuchs, Christoph Draxler, Eva Liina Asu, Dan Dediu, Katri Hiovain, Shigeto Kawahara, Sofia Koutalidis, Manfred Krifka, Pärtel Lippus, Gary Lupyan, Grace E. Oh, Jing Paul, Caterina Petrone, Rachid Ridouane, Sabine Reiter, Nathalie Schümchen, Ádám Szalontai, Özlem Ünal-Logacev, Jochen Zeller, Bodo Winter, Marcus Perlman
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.706432

Serum C-Reactive Protein and Periodontitis: A Systematic Review and Meta-Analysis
Cited by: 42
Author(s): Vanessa Machado, Cláudia Escalda, Syed Basit Hussain, Shailly Luthra, Paulo Mascarenhas, Marco Orlandi, José João Mendes, Francesco D’Aiuto
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.4837

Shelters can negatively affect growth and welfare in lumpfish if feed is delivered continuously
Cited by: 9
Author(s): Ása Johannesen, Nakita E. Joensen, Eyðfinn Magnussen
Software Mentions: 3
Published: about 8 years ago

10.3389/fimmu.2021.717832

Key Gene and Functional Pathways Identified in Unexplained Recurrent Spontaneous Abortion Using Targeted RNA Sequencing and Clinical Analysis
Cited by: 8
Author(s): Heng Gu, Longyu Li, Meng‐Xuan Du, Hang Xu, Mengge Gao, Xiaohua Liu, Xiangcai Wei, Xingming Zhong
Software Mentions: 3
Published: almost 5 years ago

10.1155/2020/7352637

The Impact of Psoriasis and Metabolic Syndrome on the Systemic Inflammation and Oxidative Damage to Nucleic Acids
Cited by: 13
Author(s): Drahomíra Holmannová, Lenka Borská, Ctirad Andrýs, Pavel Borský, Jan Kremláček, Květoslava Hamáková, Vít Řeháček, Andrea Málková, Tereza Švadláková, Vladimír Palička, Jan Krejsek, Zdeněk Fiala
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.7506

Effects of digging by a native and introduced ecosystem engineer on soil physical and chemical properties in temperate grassy woodland
Cited by: 9
Author(s): Catherine E. Ross, Nicola Munro, Philip S. Barton, Maldwyn J. Evans, J. Gillen, Bennett MacDonald, Sue McIntyre, Saul A. Cunningham, Adrian D. Manning
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.6090

Rapid increases in soil pH solubilise organic matter, dramatically increase denitrification potential and strongly stimulate microorganisms from theFirmicutesphylum
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Author(s): Craig Anderson, Michelle E. Peterson, Rebekah A. Frampton, Simon Bulman, Sandi Keenan, D. Curtin
Software Mentions: 3
Published: over 7 years ago

10.3389/fimmu.2021.649475

Genome-Wide Gene Expression Analysis of Mtb-Infected DC Highlights the Rapamycin-Driven Modulation of Regulatory Cytokines via the mTOR/GSK-3β Axis
Cited by: 3
Author(s): Marilena P. Etna, Martina Severa, Valerio Licursi, Manuela Pardini, Melania Cruciani, Fabiana Rizzo, Elena Giacomini, Gianfranco Macchia, Orazio Palumbo, Raffaella Stallone, Massimo Carella, Mark Livingstone, Rodolfo Negri, Sandra Pellegrini, Eliana M. Coccia
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.11308

Seagrass structural and elemental indicators reveal high nutrient availability within a tropical lagoon in Panama
Cited by: 3
Author(s): Julie Gaubert-Boussarie, Andrew H. Altieri, J. Emmett Duffy, Justin E. Campbell
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.590532

Hypoxia Routes Tryptophan Homeostasis Towards Increased Tryptamine Production
Cited by: 6
Author(s): Soumya R. Mohapatra, Ahmed Sadik, Suraj Sharma, Gernot Poschet, Hagen M. Gegner, Tobias V. Lanz, Philippe Lucarelli, Ursula Klingmüller, Michael Platten, Ines Heiland, Christiane A. Opitz
Software Mentions: 3
Published: over 5 years ago

10.1002/jimd.12277

Hearing loss in patients with mucopolysaccharidoses ‐1 and ‐6 after hematopoietic cell transplantation: A longitudinal analysis
Cited by: 4
Author(s): Brigitte T.A. van den Broek, A.L. Smit, Jaap Jan Boelens, Peter M. van Hasselt
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.10671

RNA sequencing analysis of FGF2-responsive transcriptome in skin fibroblasts
Cited by: 4
Author(s): Bingcheng Wu, Xinjie Tang, Zhaoping Zhou, Hong-Lin Ke, Shao Tang, Ronghu Ke
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2021.726472

Endocervical Regulatory T Cells Are Associated With Decreased Genital Inflammation and Lower HIV Target Cell Abundance
Cited by: 6
Author(s): Aloysious Ssemaganda, François Cholette, Michelle Perner, Cheli Kambaran, Wendy Adhiambo, Peter M. Wambugu, Henok Gebrebrhan, Amy Lee, Faisal Nuhu, Ruth S. Mwatelah, Naima Jahan, Tosin Omole, Tabitha Wanjiru, Apollo Gitau, Joshua Kimani, Lyle R. McKinnon
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00442-020-04678-w

Bitter fruits of hard labour: diet metabarcoding and telemetry reveal that urban songbirds travel further for lower-quality food
Cited by: 28
Author(s): Crinan Jarrett, Luke L. Powell, Heather McDevitt, Barbara Helm, Andreanna J. Welch
Software Mentions: 3
Published: about 6 years ago

10.1186/s12711-019-0456-8

Removal of alleles by genome editing (RAGE) against deleterious load
Cited by: 45
Author(s): Martin Johnsson, R. Chris Gaynor, Janez Jenko, Gregor Gorjanc, Dirk-Jan de Koning, John M. Hickey
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-92222-y

Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense
Cited by: 14
Author(s): Jannie G. E. Henderickx, Romy D. Zwittink, Ingrid B. Renes, Richard A. van Lingen, Diny van Zoeren‐Grobben, Liesbeth J. Groot Jebbink, Sjef Boeren, Ruurd M. van Elburg, Jan Knol, Clara Belzer
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2020.598636

Early Cytokine Induction Upon Pseudomonas aeruginosa Infection in Murine Precision Cut Lung Slices Depends on Sensing of Bacterial Viability
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Author(s): Ulrike Kolbe, Buqing Yi, Tanja Poth, Amy E. Saunders, Sébastien Boutin, Alexander H. Dalpke
Software Mentions: 3
Published: over 5 years ago

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Papers Mentioning ggplot2 11,441