cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.18632/aging.104137

Development and validation of a prognostic model for kidney renal clear cell carcinoma based on RNA binding protein expression
Cited by: 12
Author(s): Yuzhu Xiang, Shengcai Zhou, Jian Hao, Chunhong Zhong, Qimei Ma, Zhuolun Sun, Chunhong Wei
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.202277

Mental awareness improved mild cognitive impairment and modulated gut microbiome
Cited by: 27
Author(s): Wei Wei Thwe Khine, Miao Lian Voong, Ted Kheng Siang Ng, Lei Feng, Grishma Rane, Alan Prem Kumar, Ee Heok Kua, Ratha Mahendran, Rathi Mahendran, Yuan‐Kun Lee
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103073

MicroRNA-375 exacerbates knee osteoarthritis through repressing chondrocyte autophagy by targeting ATG2B
Cited by: 30
Author(s): Hongxing Li, Zhiling Li, Yigang Pi, Yang Chen, Lin Mei, Yiliao Luo, Jingping Xie, Xinzhan Mao
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.101832

Epigenetic signature: implications for mitochondrial quality control in human aging
Cited by: 15
Author(s): Patrizia D’Aquila, Alberto Montesanto, Francesco De Rango, Francesco Guarasci, Giuseppe Passarino, Dina Bellizzi
Software Mentions: 3
Published: over 7 years ago

10.18632/aging.102497

Global, regional, and national prevalence and disability-adjusted life-years for infertility in 195 countries and territories, 1990–2017: results from a global burden of disease study, 2017
Cited by: 257
Author(s): Hui Sun, Ting-Ting Gong, Yuting Jiang, Shuang Zhang, Yuhong Zhao, Qi‐Jun Wu
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.203039

Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways
Cited by: 6
Author(s): Jazmín Calyeca, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202876

Identification of prognostic biomarkers associated with the occurrence of portal vein tumor thrombus in hepatocellular carcinoma
Cited by: 10
Author(s): Tong Lin, Lin Zheng, Peipei Mai, E Zhang, Lisheng Peng
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101985

Prediction of competing endogenous RNA coexpression network as prognostic markers in AML
Cited by: 38
Author(s): Jun Dan Wang, Hongsheng Zhou, Xi Xiang Tu, Yi He, Qi Fa Liu, Quentin Liu, Zi Long
Software Mentions: 3
Published: about 7 years ago

10.1111/acel.12707

Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: over 8 years ago

10.1186/s13195-020-00641-2

Diverse proteins aggregate in mild cognitive impairment and Alzheimer’s disease brain
Cited by: 20
Author(s): Devin Kepchia, Ling Huang, Richard Dargusch, Robert A. Rissman, Maxim N. Shokhirev, Wolfgang Fischer, David Schubert
Software Mentions: 3
Published: about 6 years ago

10.1186/s13195-021-00778-8

The use of angiotensin-converting enzyme inhibitors vs. angiotensin receptor blockers and cognitive decline in Alzheimer’s disease: the importance of blood-brain barrier penetration and APOE ε4 carrier status
Cited by: 27
Author(s): Michael Ouk, Che‐Yuan Wu, Jennifer S. Rabin, Aaron Jackson, Jodi D. Edwards, Joel Ramirez, Mario Masellis, Richard H. Swartz, Nathan Herrmann, Krista L. Lanctôt, Sandra E. Black, Walter Swardfager
Software Mentions: 3
Published: over 5 years ago

10.1093/ajcn/nqy326

The relationship between wasting and stunting: a retrospective cohort analysis of longitudinal data in Gambian children from 1976 to 2016
Cited by: 103
Author(s): Simon Schoenbuchner, Carmel Dolan, Martha Mwangome, Andrew Hall, Stephanie A Richard, Jonathan C. K. Wells, Tanya Khara, Bakary Sonko, Andrew M. Prentice, Sophie E. Moore
Software Mentions: 3
Published: about 7 years ago

10.1152/ajplung.00128.2019

PDGFRα and αSMA mark two distinct mesenchymal cell populations involved in parenchymal and vascular remodeling in pulmonary fibrosis
Cited by: 30
Author(s): Valentina Biasin, Slaven Crnković, Anita Sahu-Osen, Anna Birnhuber, Elie El Agha, Katharina Sinn, Walter Klepetko, Andrea Olschewski, Savério Bellusci, Leigh M. Marsh, Grażyna Kwapiszewska
Software Mentions: 3
Published: over 6 years ago

10.1007/s13280-020-01405-w

Ecosystem service lens reveals diverse community values of small-scale fisheries
Cited by: 3
Author(s): Kara E. Pellowe, Heather M. Leslie
Software Mentions: 3
Published: almost 6 years ago

10.1007/s00216-019-01976-y

Quantification of nitroaromatic explosives in contaminated soil using MALDI-TOF mass spectrometry
Cited by: 11
Author(s): Susan Kober, Henner Hollert, Marcus Frohme
Software Mentions: 3
Published: about 7 years ago

10.1155/2020/6827057

Development of a Ten-lncRNA Signature Prognostic Model for Breast Cancer Survival: A Study with the TCGA Database
Cited by: 11
Author(s): Wenqing Zhou, Yongkui Pang, Yunmin Yao, Huiying Qiao
Software Mentions: 3
Published: about 6 years ago

10.1007/s10071-020-01410-2

Who turns to the human? Companion pigs’ and dogs’ behaviour in the unsolvable task paradigm
Cited by: 13
Author(s): Paula Pérez Fraga, László Gerencsér, Melinda Lovas, Dóra Újváry, Attila Andics
Software Mentions: 3
Published: about 6 years ago

10.1007/s10071-018-1220-0

Sight or smell: which senses do scavenging raptors use to find food?
Cited by: 16
Author(s): Simon Potier, Olivier Duriez, Aurélie Célérier, Jean Louis Liegeois, Francesco Bonadonna
Software Mentions: 3
Published: almost 8 years ago

10.1186/s42523-020-00068-y

Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
Cited by: 7
Author(s): Raphael Eisenhofer, Kristofer M. Helgen, David A. Taggart
Software Mentions: 3
Published: over 5 years ago

10.1186/s42523-021-00106-3

Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review
Cited by: 17
Author(s): Chian Teng Ong, Conny Turni, G. Boe-Hansen, B. J. Hayes, A.E. Lew-Tabor
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11030801

Cryptosporidium spp. and Giardia spp. in Free-Ranging Introduced Monk Parakeets from Santiago, Chile
Cited by: 5
Author(s): Alejandra Sandoval-Rodríguez, Daniela Marcone, Raúl Alegría-Morán, Matilde Larraechea, Karina Yévenes, Fernando Fredes, Cristóbal Briceño
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10091641

The Effect of Transitioning between Feeding Methods on the Gut Microbiota Dynamics of Yaks on the Qinghai–Tibet Plateau
Cited by: 11
Author(s): Xiaoling Zhang, Tianwei Xu, Xungang Wang, Yuanyue Geng, Hongjin Liu, Linyong Hu, Na Zhao, Shenghong Kang, Wan-Min Zhang, Shixiao Xu
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani10020348

Effects of Farrowing Stall Layout and Number of Heat Lamps on Sow and Piglet Production Performance
Cited by: 8
Author(s): Suzanne M Leonard, Hongwei Xin, T. M. Brown–Brandl, Brett C. Ramirez, Somak Dutta, Gary A. Rohrer
Software Mentions: 3
Published: over 6 years ago

10.3390/ani10030426

Effects of Different Stroking Styles on Behaviour and Cardiac Parameters in Heifers
Cited by: 10
Author(s): Annika Lange, Sandra Franzmayr, Vera Wisenöcker, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 3
Published: over 6 years ago

10.3390/ani11020344

Optimal Flow—A Pilot Study Balancing Sheep Movement and Welfare in Abattoirs
Cited by: 2
Author(s): Melissa J. Starling, Elyssa Payne, Paul D. McGreevy
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11061604

The Impact of Age at First Lambing on Milk Yield and Lactation Length in a Population of Istrian Sheep under Semi-Intensive Management
Cited by: 2
Author(s): Ante Kasap, Jelena Ramljak, Boro Mioč, Valentino Držaić, Ivan Širić, Darko Jurković, Marija Špehar
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11071927

Genome-Wide Association Study on Reproduction-Related Body-Shape Traits of Chinese Holstein Cows
Cited by: 16
Author(s): Xubin Lu, Ismail Mohamed Abdalla, Mudasir Nazar, Yongliang Fan, Zhipeng Zhang, Xinyue Wu, Tianle Xu, Zhangping Yang
Software Mentions: 3
Published: about 5 years ago

10.3390/ani10091632

Risky Business: Live Non-CITES Wildlife UK Imports and the Potential for Infectious Diseases
Cited by: 15
Author(s): Jennah Green, Emma Coulthard, John Norrey, David Megson, Neil D’Cruze
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani11030588

A Comparative Perspective on Three Primate Species’ Responses to a Pictorial Emotional Stroop Task
Cited by: 13
Author(s): Lydia M. Hopper, Matthias Allritz, Crystal L. Egelkamp, Sarah M. Huskisson, Sarah L. Jacobson, Jesse G. Leinwand, Stephen R. Ross
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11082457

Individual Nest Site Preferences Do Not Explain Upslope Population Shifts of a Secondary Cavity-Nesting Species
Cited by: 0
Author(s): Elisa Abeyta, Andrew W. Bartlow, Charles D. Hathcock, Jeanne M. Fair
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11092549

Data Collection for the Fourth Multicentre Confidential Enquiry into Perioperative Equine Fatalities (CEPEF4) Study: New Technology and Preliminary Results
Cited by: 13
Author(s): Miguel Gozalo‐Marcilla, Regula Bettschart‐Wolfensberger, Mark Johnston, Polly Taylor, J. I. Redondo
Software Mentions: 3
Published: almost 5 years ago

10.3390/ani11040938

Assessment of the Behavioural Response of Korean Water Deer (Hydropotes inermis argyropus) to Different Fence Heights
Cited by: 3
Author(s): Hee-Bok Park, Donggul Woo, Tae Young Choi, Sungwon Hong
Software Mentions: 3
Published: over 5 years ago

10.3390/ani9100745

Can Responsible Ownership Practices Influence Hunting Behavior of Owned Cats?: Results from a Survey of Cat Owners in Chile
Cited by: 12
Author(s): Sebastián Escobar, Raúl Alegría-Morán, Javiera Calderón-Amor, Tamara Tadich
Software Mentions: 3
Published: almost 7 years ago

10.3390/ani11051198

Does Traditional Feeding of Outdoor Guard Dogs Provide a Food Resource for Wild Mammals and Birds?
Cited by: 2
Author(s): Róża Andrzejczak, Łukasz Dylewski, Leszek Jerzak, Branislav Peťko, Łukasz Myczko
Software Mentions: 3
Published: over 5 years ago

10.3390/ani7120096

Should the Contribution of One Additional Lame Cow Depend on How Many Other Cows on the Farm Are Lame?
Cited by: 11
Author(s): Peter Sandøe, Björn Forkman, Franziska Hakansson, S.N. Andreasen, Rikke Nøhr, Matt Denwood, Thomas Bøker Lund
Software Mentions: 3
Published: over 8 years ago

10.1080/07853890.2021.1908588

Multi-omics reveals novel prognostic implication of SRC protein expression in bladder cancer and its correlation with immunotherapy response
Cited by: 9
Author(s): Wenhao Xu, Aihetaimujiang Anwaier, Chao Ma, Wangrui Liu, Xi Tian, Maierdan Palihati, Xiaoxin Hu, Yuanyuan Qu, Ye Zhang, Dingwei Ye
Software Mentions: 3
Published: over 5 years ago

10.3390/antibiotics9020055

A 28 Day Clinical Assessment of a Lactic Acid-containing Antimicrobial Intimate Gel Wash Formulation on Skin Tolerance and Impact on the Vulvar Microbiome
Cited by: 11
Author(s): Elizabeth Bruning, Ying Chen, Karen McCue, Joseph R. Rubino, Jeremy E. Wilkinson, Alan D. Brown
Software Mentions: 3
Published: over 6 years ago

10.3390/antibiotics10050491

New Sequence Type ST3449 in Multidrug-Resistant Pseudomonas aeruginosa Isolates from a Cystic Fibrosis Patient
Cited by: 4
Author(s): Catalina Díaz-Ríos, Marta Hernández, David Abad, Laura Álvarez-Montes, Athanasia Varsaki, David Iturbe-Fernández, Jorge Calvo, Alain A. Ocampo-Sosa
Software Mentions: 3
Published: over 5 years ago

10.3390/antibiotics10080926

Protective Effect of Baicalin against Clostridioides difficile Infection in Mice
Cited by: 4
Author(s): Abraham Joseph Pellissery, Poonam Gopika Vinayamohan, Deepa Kuttappan, Neha Mishra, B. O. Fragomeni, Kendra Maas, Shankumar Mooyottu, Kumar Venkitanarayanan
Software Mentions: 3
Published: about 5 years ago

10.3390/antibiotics10040364

Towards a Better and Harmonized Education in Antimicrobial Stewardship in European Veterinary Curricula
Cited by: 14
Author(s): Carmen Espinosa-Gongora, Lisbeth Rem Jessen, Oliver James Dyar, Alain Bousquet‐mélou, Bruno González‐Zorn, Céline Pulcini, G. Re, Štefan Schwarz, Dorina Timofte, Pierre‐Louis Toutain, Luca Guardabassi
Software Mentions: 3
Published: over 5 years ago

10.3390/antibiotics10050557

Pharmacokinetic/Pharmacodynamic Target Attainment Based on Measured versus Predicted Unbound Ceftriaxone Concentrations in Critically Ill Patients with Pneumonia: An Observational Cohort Study
Cited by: 8
Author(s): Matthias Gijsen, Erwin Dreesen, Ruth Van Daele, Pieter Annaert, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 3
Published: over 5 years ago

10.3390/antiox10091484

Aryl Hydrocarbon Receptor and Cysteine Redox Dynamics Underlie (Mal)adaptive Mechanisms to Chronic Intermittent Hypoxia in Kidney Cortex
Cited by: 6
Author(s): Maria João Correia, António B. Pimpão, Filipa Lopes‐Coelho, Catarina O. Sequeira, Nuno R. Coelho, Clara Gonçalves-Dias, Robert Barouki, Xavier Coumoul, Jacinta Serpa, Judit Morelló, Emília C. Monteiro, Sofia A. Pereira
Software Mentions: 3
Published: almost 5 years ago

10.1128/AEM.02164-18

Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry
Cited by: 25
Author(s): Laura Zinke, Clemens Glombitza, John Bird, Hans Røy, Bo Barker Jørgensen, Karen G. Lloyd, Jan P. Amend, Brandi Kiel Reese
Software Mentions: 3
Published: over 7 years ago

10.1128/AEM.02851-18

High Genetic Potential for Proteolytic Decomposition in Northern Peatland Ecosystems
Cited by: 4
Author(s): Emily B. Graham, Fan Yang, Sheryl Bell, Kirsten Hofmockel
Software Mentions: 3
Published: over 7 years ago

10.1128/AEM.02803-20

Localization of Bacterial Communities within Gut Compartments across Cephalotes Turtle Ants
Cited by: 14
Author(s): Peter J. Flynn, Catherine L. D’Amelio, Jon G. Sanders, Jacob A. Russell, Corrie S. Moreau
Software Mentions: 3
Published: over 5 years ago

10.1128/AEM.01007-19

Vibrio parahaemolyticus in the Chesapeake Bay: Operational In Situ Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements
Cited by: 12
Author(s): Benjamin J. K. Davis, John M. Jacobs, Benjamin F. Zaitchik, Angelo DePaola, Frank C. Curriero
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00204-020-02765-8

Human variability in isoform-specific UDP-glucuronosyltransferases: markers of acute and chronic exposure, polymorphisms and uncertainty factors
Cited by: 23
Author(s): Emma E.J. Kasteel, K. Darney, Nynke I. Kramer, Jean‐Lou Dorne, L.S. Lautz
Software Mentions: 3
Published: over 6 years ago

10.1186/s13075-019-2069-6

High-throughput sequencing of CD4+ T cell repertoire reveals disease-specific signatures in IgG4-related disease
Cited by: 11
Author(s): Liwen Wang, Panpan Zhang, Jieqiong Li, Hui Lu, Linyi Peng, Jing Ling, Xuan Zhang, Xiaofeng Zeng, Yan Zhao
Software Mentions: 3
Published: over 6 years ago

10.1186/s13075-017-1273-5

Varying the item format improved the range of measurement in patient-reported outcome measures assessing physical function
Cited by: 11
Author(s): Gregor Liegl, Barbara Gandek, Felix Fischer, Jakob Bue Bjørner, John E. Ware, Matthias Rose, James F. Fries, Sandra Nolte
Software Mentions: 3
Published: over 9 years ago

10.1186/s13075-018-1702-0

Cytokine production by activated plasmacytoid dendritic cells and natural killer cells is suppressed by an IRAK4 inhibitor
Cited by: 38
Author(s): Karin Hjorton, Niklas Hagberg, Elisabeth Israelsson, Lisa Jinton, Olof Berggren, Johanna K. Sandling, Kristofer Thörn, John Mo, Maija‐Leena Eloranta, Lars Rönnblom
Software Mentions: 3
Published: almost 8 years ago

10.5713/ajas.19.0427

Effects of multi-strain probiotic supplementation on intestinal microbiota, tight junctions, and inflammation in young broiler chickens challenged with Salmonella enterica subsp. enterica
Cited by: 23
Author(s): Chi Huan Chang, Po-Yun Teng, Tzu-Tai Lee, Bin Yu
Software Mentions: 3
Published: almost 6 years ago

10.1002/aur.2390

“Reading the Mind in the Eyes” in Autistic Adults is Modulated by Valence and Difficulty: An InFoR Study
Cited by: 3
Author(s): Matias Baltazar, Marie‐Maude Geoffray, Christopher H. Chatham, Manuel Bouvard, Axelle Martinez Teruel, D. Monnet, Isabelle Scheid, E. Murzi, Sandrine Couffin-Cadièrgues, Daniel Umbricht, Lorraine Murtagh, Richard Delorme, Myriam Ly Le-Moal, Marion Leboyer, Anouck Amestoy
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2105-15-28

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data
Cited by: 13
Author(s): Charles N. Cole, Konstantinos Krampis, Konstantinos Karagiannis, Jonas S. Almeida, William J. Faison, Mona Motwani, Qing Wan, Anton Golikov, Yang Pan, Vahan Simonyan, Raja Mazumder
Software Mentions: 3
Published: over 12 years ago

10.1186/s12859-018-2133-2

TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing
Cited by: 1
Author(s): Michele Farris, Andrew R. Scott, Pamela A. Texter, Marta Bartlett, Patricia Coleman, David J. Masters
Software Mentions: 3
Published: over 8 years ago

10.1186/s12859-019-3187-5

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks
Cited by: 51
Author(s): Attayeb Mohsen, Jonguk Park, Yi‐An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12859-021-04338-7

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data
Cited by: 1
Author(s): Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-020-3411-3

Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data
Cited by: 17
Author(s): Guang‐Hui Fu, Yuan-Jiao Wu, Min-Jie Zong, Jianxin Pan
Software Mentions: 3
Published: over 6 years ago

10.1186/s12915-015-0200-y

Emergent material properties of developing epithelial tissues
Cited by: 31
Author(s): Pedro F. Machado, Julia Duque, Jocelyn Étienne, Alfonso Martínez-Arias, Guy B. Blanchard, Nicole Gorfinkiel
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12915-021-01004-5

Transcription initiation of distant core promoters in a large-sized genome of an insect
Cited by: 2
Author(s): Qing Liu, Feng Jiang, Jie Zhang, Li Xiao, Le Kang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-019-0730-9

Joint learning improves protein abundance prediction in cancers
Cited by: 12
Author(s): Hongyang Li, Omer Siddiqui, Hongjiu Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/1741-7007-10-85

Multiparameter behavioral profiling reveals distinct thermal response regimes in Caenorhabditis elegans
Cited by: 43
Author(s): Rajarshi Ghosh, Aylia Mohammadi, Leonid Kruglyak, William S. Ryu
Software Mentions: 3
Published: almost 14 years ago

10.1186/s12915-021-01108-y

Mutant resources for functional genomics in Dictyostelium discoideum using REMI-seq technology
Cited by: 14
Author(s): Nicole Gruenheit, Amy Baldwin, Balint Stewart, Sarah Jaques, Thomas Keller, Katie Parkinson, William Salvidge, Robert Baines, Chris Brimson, Jason B. Wolf, Rex L. Chisholm, Adrian J. Harwood, Christopher Thompson
Software Mentions: 3
Published: about 5 years ago

10.1186/s12915-020-00906-0

Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation
Cited by: 35
Author(s): Lorraine A. Draper, Feargal J. Ryan, Marion Dalmasso, Pat G. Casey, A. McCann, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12915-018-0579-3

Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans
Cited by: 14
Author(s): Rebecca E. W. Kaplan, Amy K. Webster, Rojin Chitrakar, Joseph A. Dent, L. Ryan Baugh
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12885-021-08319-0

Identification of 4-genes model in papillary renal cell tumor microenvironment based on comprehensive analysis
Cited by: 4
Author(s): Lun Luo, Haiyi Zhou, Hao Su
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08456-6

Elevated TYROBP expression predicts poor prognosis and high tumor immune infiltration in patients with low-grade glioma
Cited by: 20
Author(s): Jiajie Lu, Yün Peng, Rihong Huang, Zejia Feng, Yongyang Fan, Haojian Wang, Zhiyong Zeng, Yunxiang Ji, Yezhong Wang, Zhaotao Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08203-x

A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer
Cited by: 5
Author(s): Xin Zhong, Feichao Xuan, Yun Qian, Junhai Pan, Suihan Wang, Wenchao Chen, Tianyu Lin, Hepan Zhu, Xianfa Wang, Guanyu Wang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08681-z

Genome-wide profiling of alternative splicing in glioblastoma and their clinical value
Cited by: 3
Author(s): Youwei Li, Dongsheng Guo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08550-9

Quantification of m6A RNA methylation modulators pattern was a potential biomarker for prognosis and associated with tumor immune microenvironment of pancreatic adenocarcinoma
Cited by: 30
Author(s): Lianzi Wang, Shubing Zhang, Huimin Li, Yang Xu, Qiang Wu, Jilong Shen, Tao Li, Yuanhong Xu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08320-7

Genomic features of rapid versus late relapse in triple negative breast cancer
Cited by: 9
Author(s): Yiqing Zhang, Sarah Asad, Zachary Weber, David Tallman, William Nock, Meghan Wyse, Jerome F. Bey, Kristin L. Dean, Elizabeth Adams, Sinclair Stockard, Jasneet Singh, Eric P. Winer, Nancy U. Lin, Yi‐Zhou Jiang, Ding Ma, Peng Wang, Leming Shi, Wei Huang, Mathew Cherian, Maryam B. Lustberg, Bhuvaneswari Ramaswamy, Sagar Sardesai, Jeffrey VanDeusen, Nicole Williams, Robert Wesolowski, Samilia Obeng‐Gyasi, Gina M. Sizemore, Claire F. Verschraegen, Daniel G. Stover
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08547-4

Correlation between vascular endothelial growth factor pathway and immune microenvironment in head and neck squamous cell carcinoma
Cited by: 4
Author(s): Chao Zhu, Liqun Gu, Zelong Liu, Li Jiang, Meiling Yao, Changyun Fang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08276-8

Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer
Cited by: 6
Author(s): Yichao Li, Sushila Jaiswal, Rupleen Kaur, Dana Alsaadi, Xiaoyu Liang, Frank A. Drews, Julie A. DeLoia, Thomas C. Krivak, Hanna M. Petrykowska, Valer Gotea, Lonnie R. Welch, Laura Elnitski
Software Mentions: 3
Published: about 5 years ago

10.1186/s12872-021-01948-0

The association between serum alanine aminotransferase and hypertension: A national based cross-sectional analysis among over 21 million Chinese adults
Cited by: 9
Author(s): Jiajing Jia, Ying Yang, Fangchao Liu, Minjin Zhang, Qin Xu, Tonglei Guo, Long Wang, Zuoqi Peng, Yuan He, Yuanyuan Wang, Ya Zhang, Honggang Zhang, Haiping Shen, Yiping Zhang, Donghai Yan, Xu Ma, Puhong Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-021-01907-5

Cranial shape diversification in horses: variation and covariation patterns under the impact of artificial selection
Cited by: 4
Author(s): Pauline Hanot, Jamsranjav Bayarsaikhan, Claude Guintard, Ashleigh Haruda, Enkhbayar Mijiddorj, Renate Schafberg, William Taylor
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12862-021-01782-0

An interplay of resource availability, population size and mutation rate potentiates the evolution of metabolic signaling
Cited by: 1
Author(s): Bhaskar Kumawat, Ramray Bhat
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-016-0765-2

Competitive males have higher quality sperm in a monogamous social bee
Cited by: 12
Author(s): Sheina Koffler, Hiára Marques Meneses, Astrid de Matos Peixoto Kleinert, Rodolfo Jaffé
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12862-014-0231-y

Osteohistological variation in growth marks and osteocyte lacunar density in a theropod dinosaur (Coelurosauria: Ornithomimidae)
Cited by: 44
Author(s): Thomas M. Cullen, David C. Evans, Michael J. Ryan, Philip J. Currie, Yoshiyuki Kobayashi
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-230X-13-148

Treatment of chronic HCV genotype 1 infection with telaprevir: a Bayesian mixed treatment comparison of fixed-length and response-guided treatment regimens in treatment-naïve and –experienced patients
Cited by: 3
Author(s): Armin D. Goralczyk, Silke Cameron, Ahmad Amanzada
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12864-018-5041-y

Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)
Cited by: 30
Author(s): Chongjing Xia, Meinan Wang, Chuntao Yin, Omar E. Cornejo, Scot H. Hulbert, X. M. Chen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-017-4198-0

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers
Cited by: 67
Author(s): Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin Ward‐Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Mélanie Waldenberger
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-018-4845-0

Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton
Cited by: 7
Author(s): Yujuan Zhang, Chengxu Zhu, Yiran Ding, Yan Zeng, Gong‐Hua Li, Ling Yang, Jianfan Wen, Bin Chen
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-019-5803-1

Expression dynamics of repetitive DNA in early human embryonic development
Cited by: 31
Author(s): Cihangir Yandım, Gökhan Karakülah
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-019-5923-7

Honey bee (Apis mellifera) larval pheromones may regulate gene expression related to foraging task specialization
Cited by: 15
Author(s): Rong Ma, Juliana Rangel, Christina M. Grozinger
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-016-3369-8

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Cited by: 39
Author(s): Markus Schlegel, Martin Münsterkötter, Ulrich Güldener, Rémy Bruggmann, Angelo Duò, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grünig
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-015-2063-6

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Cited by: 73
Author(s): Robert M. Bowers, Alicia Clum, Hope Tice, Joanne Lim, Kanwar Pal Singh, Doina Ciobanu, Chew Yee Ngan, Jan‐Fang Cheng, Susannah G. Tringe, Tanja Woyke
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-021-07835-4

Investigating the genetic architecture of disease resilience in pigs by genome-wide association studies of complete blood count traits collected from a natural disease challenge model
Cited by: 3
Author(s): Xue Bai, Tong Yang, Austin M. Putz, Zhiquan Wang, Changxi Li, Frédéric Fortin, John C. S. Harding, Michael K. Dyck, Jack C. M. Dekkers, Catherine J. Field, Graham Plastow
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-015-1617-y

High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse
Cited by: 5
Author(s): Kevin Mäder, Leah Rae Donahue, Ralph Müller, Marco Stampanoni
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-018-5167-y

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents
Cited by: 13
Author(s): Audrey Segura, Marine Bertoni, Pauline Auffret, Christophe Klopp, Olivier Bouchez, Clémence Genthon, Alexandra Durand, Yolande Bertin, Evelyne Forano
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-017-4385-z

Transcriptional effects of a positive feedback circuit in Drosophila melanogaster
Cited by: 5
Author(s): Jarosław Bryk, R. Guy Reeves, Floyd A. Reed, Jai A. Denton
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: over 8 years ago

10.1186/s12903-021-01719-5

Core of the saliva microbiome: an analysis of the MG-RAST data
Cited by: 8
Author(s): Simone Santos Oliveira, Rafaela Rie Nishiyama, Claudio A C Trigo, Ana Luíza Mattos‐Guaraldi, Alberto M. R. Dávila, Rodrigo Desessards Jardim, Flávio Henrique Baggio Aguiar
Software Mentions: 3
Published: about 5 years ago

10.1186/s12903-020-01156-w

Association between periodontitis and all-cause and cancer mortality: retrospective elderly community cohort study
Cited by: 14
Author(s): Ping-Chen Chung, Ta‐Chien Chan
Software Mentions: 3
Published: about 6 years ago

10.1186/s12887-020-02344-x

Impact of congenital heart disease on outcomes among pediatric patients hospitalized for influenza infection
Cited by: 13
Author(s): Laxmi V. Ghimire, Fu‐Sheng Chou, Anita J. Moon-Grady
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12870-021-02893-y

Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium
Cited by: 32
Author(s): Jiajia Zuo, Mengting Zu, Lei Liu, Xiaomei Song, Yingdan Yuan
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-020-02604-z

Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study
Cited by: 20
Author(s): Benjamin Karikari, Zili Wang, Yefei Zhou, Wenliang Yan, Jiao Feng, Tuanjie Zhao
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12870-020-02365-9

High abundance of Ralstonia solanacearum changed tomato rhizosphere microbiome and metabolome
Cited by: 33
Author(s): Teng Wen, Mingwen Zhao, Ting Liu, Qiwei Huang, Jun Yuan, Qirong Shen
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-020-2305-x

Linking crop traits to transcriptome differences in a progeny population of tetraploid potato
Cited by: 7
Author(s): Erik Alexandersson, Sandeep Kushwaha, Aastha Subedi, Deborah Weighill, Sharlee Climer, Daniel Jacobson, Erik Andréasson
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-018-1587-8

Interactive effects of multiple vernalization (Vrn-1)- and photoperiod (Ppd-1)-related genes on the growth habit of bread wheat and their association with heading and flowering time
Cited by: 10
Author(s): Shulin Chen, Junsen Wang, Genwang Deng, Long Chen, Xuejiao Cheng, Haixia Xu, Kai Zhan
Software Mentions: 3
Published: over 7 years ago

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Papers Mentioning ggplot2 11,441