cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1534/g3.117.040105

Extensive Copy Number Variation in Fermentation-Related Genes Among<i>Saccharomyces cerevisiae</i>Wine Strains
Cited by: 46
Author(s): Jacob L. Steenwyk, Antonis Rokas
Software Mentions: 3
Published: about 9 years ago

10.1186/s12866-019-1548-x

Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Cited by: 24
Author(s): Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron Read, Tim A. McAllister
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.10671

RNA sequencing analysis of FGF2-responsive transcriptome in skin fibroblasts
Cited by: 4
Author(s): Bingcheng Wu, Xinjie Tang, Zhaoping Zhou, Hong-Lin Ke, Shao Tang, Ronghu Ke
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-80201-8

Summary of the COVID-19 epidemic and estimating the effects of emergency responses in China
Cited by: 10
Author(s): Junwen Tao, Yue Ma, Caiying Luo, Jiaqi Huang, Tao Zhang, Fei Yin
Software Mentions: 3
Published: over 5 years ago

10.3897/mycokeys.43.25090

New host associations and a novel species for the gall-inducing acacia rust genus Ravenelia in South Africa
Cited by: 7
Author(s): Malte Ebinghaus, Wolfgang D. Maier, Michael J. Wingfield, Dominik Begerow
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0239263

Diversity of nutritional content in seeds of Brazilian common bean germplasm
Cited by: 11
Author(s): Jéssica Delfini, Vânia Moda-Cirino, José dos Santos Neto, Juliana Sawada Buratto, Paulo Maurício Ruas, Leandro Simões Azeredo Gonçalves
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.118.200815

Dosage Compensation and Gene Expression of the X Chromosome in Sheep
Cited by: 9
Author(s): Jianan Duan, Kaleigh Flock, Nathanial Jue, Mingyuan Zhang, A. K. Jones, Sahar Al Seesi, Ion Măndoiu, S. M. Pillai, M. L. Hoffman, Rachel J. O’Neill, S. A. Zinn, Kristen E Govoni, Sarah Reed, Hesheng Jiang, Zongliang Jiang, X. Cindy Tian
Software Mentions: 3
Published: over 7 years ago

10.1186/s13024-018-0274-4

Long-read sequencing across the C9orf72 ‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease
Cited by: 90
Author(s): Mark T. W. Ebbert, Stefan L. Farrugia, Jonathon P. Sens, Karen Jansen-West, Tania F. Gendron, Mercedes Prudencio, Ian McLaughlin, Brett Bowman, Matthew G. Seetin, Mariely DeJesus-Hernandez, Jazmyne L. Jackson, Patricia E. Brown, Dennis W. Dickson, Marka van Blitterswijk, Rosa Rademakers, Leonard Petrucelli, John Denis Fryer
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0104567

Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants
Cited by: 30
Author(s): Liliana Greger, Jing Su, Johan Rung, Pedro G. Ferreira, Tuuli Lappalainen, Emmanouil T. Dermitzakis, Alvis Brāzma
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-020-80065-y

Transcriptomics analysis for the identification of potential age-related genes and cells associated with three major urogenital cancers
Cited by: 3
Author(s): Jinlong Cao, Jianpeng Li, Xin Yang, Pan Li, Zhiqiang Yao, Dali Han, Lijun Ying, Lijie Wang, Junqiang Tian
Software Mentions: 3
Published: over 5 years ago

10.1186/s12967-019-1775-9

A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers
Cited by: 42
Author(s): Wai Hoong Chang, Dónall Forde, Alvina G. Lai
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.740

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking
Cited by: 97
Author(s): Yuji Sekiguchi, Akiko Ohashi, Donovan H. Parks, Toshihiro Yamauchi, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 3
Published: over 11 years ago

10.1186/s12967-021-02972-6

The germline/somatic DNA damage repair gene mutations modulate the therapeutic response in Chinese patients with advanced pancreatic ductal adenocarcinoma
Cited by: 9
Author(s): Lin Shui, Xiaofen Li, Yang Peng, Jiangfang Tian, Shuangshuang Li, Du He, Ang Li, Bole Tian, Mao Li, Heli Gao, Ning An, Cheng Yi, Dan Cao
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.9024

Long-term continuously monocropped peanut significantly changed the abundance and composition of soil bacterial communities
Cited by: 8
Author(s): Mingna Chen, Hu Liu, Shanlin Yu, Mian Wang, Lijuan Pan, Na Chen, Tong Wang, Xiaoyuan Chi, Binghai Du
Software Mentions: 3
Published: about 6 years ago

10.1200/PO.18.00014

Impact of Variable RNA-Sequencing Depth on Gene Expression Signatures and Target Compound Robustness: Case Study Examining Brain Tumor (Glioma) Disease Progression
Cited by: 3
Author(s): Alexey Stupnikov, Paul G. O’Reilly, Caitríona E. McInerney, Aideen C. Roddy, Philip D. Dunne, Alan Gilmore, Hayley Patricia Ellis, Tom Flannery, Estelle Healy, Stuart McIntosh, Kienan I. Savage, Kathreena M. Kurian, Frank Emmert‐Streib, Kevin M. Prise, Manuel Salto-Tellez, Darragh G. McArt
Software Mentions: 3
Published: over 7 years ago

10.1155/2020/7232614

Age- and Organ-Specific Differences in Mitochondrial Bioenergetics in Brown Norway Rats
Cited by: 7
Author(s): Jignesh D. Pandya, Matthew C. Valdez, Joyce E. Royland, Robert C. MacPhail, Patrick G. Sullivan, Prasada Rao S. Kodavanti
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-79471-z

Optimal body size adjustment of L3 CT skeletal muscle area for sarcopenia assessment
Cited by: 21
Author(s): Brian A. Derstine, Sven A. Holcombe, Brian E. Ross, Nicholas Wang, Grace L. Su, Stewart C. Wang
Software Mentions: 3
Published: over 5 years ago

10.1161/JAHA.116.004695

Pre‐Implantation Balloon Aortic Valvuloplasty and Clinical Outcomes Following Transcatheter Aortic Valve Implantation: A Propensity Score Analysis of the UK Registry
Cited by: 35
Author(s): Glen P. Martin, Matthew Sperrin, Rodrigo Bagur, Mark de Belder, Iain Buchan, Mark Gunning, Peter Ludman, Mamas A. Mamas
Software Mentions: 3
Published: over 9 years ago

10.1161/JAHA.117.007229

Relative Survival After Transcatheter Aortic Valve Implantation: How Do Patients Undergoing Transcatheter Aortic Valve Implantation Fare Relative to the General Population?
Cited by: 13
Author(s): Glen P. Martin, Matthew Sperrin, William Hulme, Peter Ludman, Mark de Belder, William D. Toff, Oras Alabas, Neil Moat, Sagar N. Doshi, Iain Buchan, John Deanfield, Chris P Gale, Mamas A. Mamas
Software Mentions: 3
Published: over 8 years ago

10.1007/s13361-018-1910-5

Distinct Stabilities of the Structurally Homologous Heptameric Co-Chaperonins GroES and gp31
Cited by: 5
Author(s): Andrey Dyachenko, Sem Tamara, Albert J. R. Heck
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-79779-w

Anti-tumour activity of deer growing antlers and its potential applications in the treatment of malignant gliomas
Cited by: 18
Author(s): Louis Chonco, Tomás Landete‐Castillejos, Gemma Serrano‐Heras, Martina Pérez Serrano, F. Javier Pérez‐Barbería, Carlos González-Armesto, Andrés J. García, Carlos de Cabo, José M. Lorenzo, Chunyi Li, Tomás Segura
Software Mentions: 3
Published: over 5 years ago

10.1080/03009734.2020.1793039

Work at inpatient care units is associated with an increased risk of SARS-CoV-2 infection; a cross-sectional study of 8679 healthcare workers in Sweden
Cited by: 24
Author(s): Anna-Karin Lidström, Fredrik Sund, Bo Albinsson, Johan Lindbäck, Gabriel Westman
Software Mentions: 3
Published: almost 6 years ago

10.1111/joa.13437

Cortical and trabecular bone structure of the hominoid capitate
Cited by: 12
Author(s): Emma E. Bird, Tracy L. Kivell, Matthew M. Skinner
Software Mentions: 3
Published: about 5 years ago

10.1186/s13068-020-01721-z

Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions
Cited by: 7
Author(s): Eva Maria Prem, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1003733

Analysis of the Protein Domain and Domain Architecture Content in Fungi and Its Application in the Search of New Antifungal Targets
Cited by: 23
Author(s): Alejandro Barrera, Ana Alastruey‐Izquierdo, Marı́a Jesús Martı́n, Isabel Cuesta, Juan Antonio Vizcaíno
Software Mentions: 3
Published: almost 12 years ago

10.1186/s40104-020-00469-8

New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens
Cited by: 19
Author(s): Wei Li, Ranran Liu, Maiqing Zheng, Furong Feng, Dawei Liu, Hyewon Lee, Guiping Zhao, Jie Wen
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.11439

Characterization of the gut microbiota in Chinese children with overweight and obesity using 16S rRNA gene sequencing
Cited by: 12
Author(s): Xiaowei Chen, Dawei Zhang, Haixiang Sun, Fei Jiang, Yan Shen, Pingmin Wei, Xiaobing Shen
Software Mentions: 3
Published: about 5 years ago

10.3390/vaccines8020164

New Insights on the Emerging Genomic Landscape of CXCR4 in Cancer: A Lesson from WHIM
Cited by: 9
Author(s): Stefania Scala, Crescenzo D’Alterio, Samantha Milanesi, Alessandra Castagna, Roberta Carriero, Floriana Maria Farina, Massimo Locati, Elena Monica Borroni
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms19113354

Transcriptome Profiles Reveal the Crucial Roles of Auxin and Cytokinin in the “Shoot Branching” of Cremastra appendiculata
Cited by: 13
Author(s): Xiang Lv, Mingsheng Zhang, Xiaolan Li, Ye RuiHua, Xiaohong Wang
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-78203-7

Salience-based object prioritization during active viewing of naturalistic scenes in young and older adults
Cited by: 13
Author(s): Antje Nuthmann, Immo Schütz, Wolfgang Einhäuser
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-79206-0

Soil fungal and bacterial communities in southern boreal forests of the Greater Khingan Mountains and their relationship with soil properties
Cited by: 11
Author(s): Thi‐Minh‐Dien Vuong, Jianyong Zeng, Xiuling Man
Software Mentions: 3
Published: over 5 years ago

10.1007/s10803-019-04331-3

Predictors of Trauma Exposure and Trauma Diagnoses for Children with Autism and Developmental Disorders Served in a Community Mental Health Clinic
Cited by: 6
Author(s): John Hoch, Adriana M. Youssef
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0164295

Cross-Species Analysis of Gene Expression and Function in Prefrontal Cortex, Hippocampus and Striatum
Cited by: 12
Author(s): Wei Chen, Xiayu Xia, Nan Song, Ying Wang, Hua Zhu, Wei Deng, Qi Kong, Xianmin Pan, Chuan Qin
Software Mentions: 3
Published: over 9 years ago

10.1128/JB.00607-20

Alkaline pH Increases Swimming Speed and Facilitates Mucus Penetration for Vibrio cholerae
Cited by: 9
Author(s): Nguyen T. Q. Nhu, John S. Lee, Helen J. Wang, Y. Dufour
Software Mentions: 3
Published: over 5 years ago

10.1074/jbc.M114.634816

Early Growth Response Genes 2 and 3 Regulate the Expression of Bcl6 and Differentiation of T Follicular Helper Cells
Cited by: 26
Author(s): Ane Ogbe, Tizong Miao, Alistair L. J. Symonds, Becky Omodho, Randeep Singh, Punamdip Bhullar, Suling Li, Ping Wang
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13068-021-01880-7

CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate
Cited by: 14
Author(s): Friederike Gutmann, Cosimo Jann, Filipa Pereira, Anders Johansson, Lars M. Steinmetz, Kiran Raosaheb Patil
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0210862

Spontaneous eye movements during focused-attention mindfulness meditation
Cited by: 7
Author(s): Alessio Matiz, Cristiano Crescentini, Anastasia Fabbro, Riccardo Budai, Massimo Bergamasco, Franco Fabbro
Software Mentions: 3
Published: over 7 years ago

10.1107/S1600577516016362

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
Cited by: 36
Author(s): Kazuya Hasegawa, Keitaro Yamashita, Taichi Murai, Nipawan Nuemket, Kunio Hirata, Go Ueno, Hideo Ago, Toru Nakatsu, Takashi Kumasaka, Masaki Yamamoto
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-020-78402-2

SARS-CoV-2 receptor ACE2 is co-expressed with genes related to transmembrane serine proteases, viral entry, immunity and cellular stress
Cited by: 29
Author(s): Wasco Wruck, James Adjaye
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-78222-4

Exploration of a novel virtual environment improves memory consolidation in ADHD
Cited by: 14
Author(s): Valentin Baumann, Thomas Birnbaum, Carolin Breitling-Ziegler, Jana Tegelbeckers, Johannes Dambacher, Elke Edelmann, Jorge R. Bergado-Acosta, Hans‐Henning Flechtner, Kerstin Krauel
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20020438

Gut Microbiota and Predicted Metabolic Pathways in a Sample of Mexican Women Affected by Obesity and Obesity Plus Metabolic Syndrome
Cited by: 114
Author(s): Alejandra Chávez-Carbajal, Khemlal Nirmalkar, Ana Bertha Pérez-Lizaur, Fernando Hernández-Quiroz, Silvia Ramírez-del-Alto, Jaime García‐Mena, César Hernández‐Guerrero
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0226547

Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data
Cited by: 27
Author(s): Dominik Buchner, Arne J. Beermann, Alex Laini, Peter Rolauffs, Simon Vitecek, Daniel Hering, Florian Leese
Software Mentions: 3
Published: over 6 years ago

10.1186/s12967-020-02321-z

Development and validation of a survival model for lung adenocarcinoma based on autophagy-associated genes
Cited by: 20
Author(s): Xiaofei Wang, Shuang Yao, Zengtuan Xiao, Jialin Gong, Li Zuo, Baoai Han, Zhen Fa Zhang
Software Mentions: 3
Published: about 6 years ago

10.1002/jcsm.12099

Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness
Cited by: 48
Author(s): Roland W. J. Hangelbroek, Parastoo Fazelzadeh, Michael Tieland, Mark V. Boekschoten, Guido Hooiveld, John van Duynhoven, James A. Timmons, Lex B. Verdijk, Lisette C. P. G. M. de Groot, Luc J. C. van Loon, Michael Müller
Software Mentions: 3
Published: over 10 years ago

10.7150/jca.35801

Identification of a six-lncRNA signature based on a competing endogenous RNA network for predicting the risk of tumour recurrence in bladder cancer patients
Cited by: 8
Author(s): Danfeng Zhao, Qiang Peng, Lu Wang, Cong Li, Yulin Lv, Yong Liu, Zhichao Wang, Ruizhe Fang, Jiaqi Wang, Zhongqing Liu, Wanhai Xu
Software Mentions: 3
Published: over 6 years ago

10.7150/jca.33805

Clinical prognostic implications of EPB41L4A expression in multiple myeloma
Cited by: 5
Author(s): Weilong Zhang, Rui Lai, Xue He, Xiaoni Liu, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Weiyou Liu, Hongmei Jing
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-78339-6

MACE RNA sequencing analysis of conjunctival squamous cell carcinoma and papilloma using formalin-fixed paraffin-embedded tumor tissue
Cited by: 8
Author(s): Stefaniya Boneva, Anja Schlecht, Peipei Zhang, Daniel Boehringer, Thabo Lapp, Hans Mittelviefhaus, Thomas Reinhard, Claudia Auw-Haedrich, Guenther Schlunck, Julian Wolf, Clemens Lange
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-77221-9

DNA aptamers against bacterial cells can be efficiently selected by a SELEX process using state-of-the art qPCR and ultra-deep sequencing
Cited by: 24
Author(s): Claudia Kolm, Isabella Cervenka, Ulrich J Aschl, Niklas Baumann, Stefan Jakwerth, Rudolf Krska, Robert L. Mach, Regina Sommer, Maria C. DeRosa, Alexander K. T. Kirschner, Andreas H. Farnleitner, Georg H. Reischer
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.39467

Prognostic role of ACTL10 in Cytogenetic Normal Acute Myeloid Leukemia
Cited by: 3
Author(s): Rui Lai, Weilong Zhang, Xue He, Xinhui Liao, Xiaoni Liu, Wei Fu, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Hongmei Jing, Weiyou Liu
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0254136

Cytomegalovirus infection in malignant pleural mesothelioma
Cited by: 2
Author(s): De Von Hunter-Schlichting, Karl T. Kelsey, Ryan T. Demmer, Manish R. Patel, Raphael Bueno, Brock C. Christensen, Naomi Fujioka, Deepa Kolarseri, Heather H. Nelson
Software Mentions: 3
Published: almost 5 years ago

10.7150/jca.51851

Bioinformatics analysis of lncRNA‑associated ceRNA network in melanoma
Cited by: 8
Author(s): Yi Ding, Min Li, Tuersong Tayier, Meilin Zhang, Long Chen, Shumei Feng
Software Mentions: 3
Published: over 5 years ago

10.1186/s13068-020-01715-x

Improvement of sabinene tolerance of Escherichia coli using adaptive laboratory evolution and omics technologies
Cited by: 18
Author(s): Tong Wu, Jinfeng Liu, Meijie Li, Ge Zhang, Lijuan Liu, Li Xing, Xiao Men, Ming Xian, Haibo Zhang
Software Mentions: 3
Published: about 6 years ago

10.3390/vaccines8040655

Immune Checkpoint Blockade Enhances Immune Activity of Therapeutic Lung Cancer Vaccine
Cited by: 3
Author(s): Pournima Kadam, Ram Pyare Singh, Michael Davoodi, Jay M. Lee, Maie St. John, Sherven Sharma
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.50472

High Expression of RhoBTB3 Predicts Favorable Chemothrapy Outcomes in non-M3 Acute Myeloid Leukemia
Cited by: 3
Author(s): Shuanghui Yang, Wei Liu, Jie Peng, Yajing Xu, Yanfeng Liu, Yan Li, Minyuan Peng, Zhao Ouyang, Cong Chen, Enyi Liu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12967-019-1904-5

High NCALD expression predicts poor prognosis of cytogenetic normal acute myeloid leukemia
Cited by: 8
Author(s): Ying Song, Weilong Zhang, Xue He, Xiaoni Liu, Ping Yang, Jing Wang, Kai Hu, Weiyou Liu, Xiuru Zhang, Hongmei Jing, Xiaoliang Yuan
Software Mentions: 3
Published: about 7 years ago

10.1186/s12891-017-1791-y

Co-expression of 1α-hydroxylase and vitamin D receptor in human articular chondrocytes
Cited by: 10
Author(s): Ann Kristin Hansen, Yngve Figenschau, Inigo Zubiaurre-Martinez
Software Mentions: 3
Published: over 8 years ago

10.7150/jca.60647

FOXD3-induced miR-133a blocks progression and metastasis of colorectal cancer through regulating UBA2
Cited by: 4
Author(s): Yuanfang Cheng, Yajuan Wang, Yuanzun Cheng, Qingmei Yang, Lejing Zhang, Zhaoxi Li, Jiancheng Cheng
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-77010-4

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica
Cited by: 5
Author(s): Damien Mornico, Chung-Chau Hon, Mikael Koutero, Christian Weber, Jean‐Yves Coppée, Marie‐Agnès Dillies, Nancy Guillén
Software Mentions: 3
Published: over 5 years ago

10.1083/jcb.201702099

BAIAP3, a C2 domain–containing Munc13 protein, controls the fate of dense-core vesicles in neuroendocrine cells
Cited by: 44
Author(s): Xingmin Zhang, Shan Jiang, Kelly A. Mitok, Lingjun Li, Alan D. Attie, Thomas F.J. Martin
Software Mentions: 3
Published: about 9 years ago

10.1083/jcb.201704102

Loss of E-cadherin provides tolerance to centrosome amplification in epithelial cancer cells
Cited by: 57
Author(s): Alexander D. Rhys, Pedro T. Monteiro, Christopher M. Smith, Malti Vaghela, Teresa Arnandis, Takuya Kato, Birgit Leitinger, Erik Sahai, Andrew D. McAinsh, Guillaume Charras, Susana A. Godinho
Software Mentions: 3
Published: over 8 years ago

10.3390/plants10071291

A Transcriptional Analysis of the Genes Involved in the Ascorbic Acid Pathways Based on a Comparison of the Juice and Leaves of Navel and Anthocyanin-Rich Sweet Orange Varieties
Cited by: 7
Author(s): P. Caruso, Mario Russo, Marco Caruso, Mario Di Guardo, Giuseppe Russo, Simona Fabroni, Nicolina Timpanaro, Concetta Licciardello
Software Mentions: 3
Published: about 5 years ago

10.3390/vaccines9030300

Factors Associated with COVID-19 Vaccine Hesitancy
Cited by: 404
Author(s): Patrícia Soares, Jorge Luiz da Rocha, Marta Moniz, Ana Gama, P.A. Laires, Ana Rita Pedro, Sónia Dias, Andreia Leite, Carla Nunes
Software Mentions: 3
Published: over 5 years ago

10.3390/bios11050159

Comparison of Leading Biosensor Technologies to Detect Changes in Human Endothelial Barrier Properties in Response to Pro-Inflammatory TNFα and IL1β in Real-Time
Cited by: 6
Author(s): James Hucklesby, Akshata Anchan, Simon J. O’Carroll, Charles P. Unsworth, Euan Graham, Catherine E. Angel
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-76229-5

Effects of set cathode potentials on microbial electrosynthesis system performance and biocathode methanogen function at a metatranscriptional level
Cited by: 8
Author(s): Ala’a Ragab, Dario Rangel Shaw, Krishna P. Katuri, Pascal E. Saikaly
Software Mentions: 3
Published: over 5 years ago

10.1111/jcmm.15957

Prediction of a competing endogenous RNA co‐expression network as a prognostic marker in glioblastoma
Cited by: 13
Author(s): Qing Peng, Runmin Li, Ying Liu, Xianghong Xu, Wensi Ni, Huiran Lin, Ning Liang
Software Mentions: 3
Published: over 5 years ago

10.1111/jcmm.15973

Integrative analysis provides multi‐omics evidence for the pathogenesis of placenta percreta
Cited by: 6
Author(s): Qingyuan Jiang, Lei Dai, Na Chen, Junshu Li, Y Gao, Jing Zhao, Ding Li, Chengbin Xie, Xiaolian Yi, Hongxin Deng, Xiaodong Wang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-76533-0

High definition transcranial direct current stimulation modulates abnormal neurophysiological activity in post-stroke aphasia
Cited by: 16
Author(s): Priyanka P. Shah-Basak, Gayatri Sivaratnam, Selina Teti, Alexander Francois-Nienaber, Maryam Yossofzai, Sabrina E M Armstrong, Sumiti Nayar, Regina Jokel, Jed A. Meltzer
Software Mentions: 3
Published: over 5 years ago

10.1186/s12882-020-01828-3

The association between serum chloride levels and chronic kidney disease progression: a cohort study
Cited by: 13
Author(s): Minesh Khatri, Joshua P. Zitovsky, Dale Lee, Kamal Nayyar, Melissa Fazzari, Candace D. Grant
Software Mentions: 3
Published: about 6 years ago

10.1186/s12883-018-1149-6

Comorbidity of migraine with ADHD in adults
Cited by: 24
Author(s): Thomas Folkmann Hansen, Louise K. Hoeffding, Lisette J. A. Kogelman, Thilde Marie Haspang, Henrik Ullum, Erik Sørensen, Christian Erikstrup, Ole Birger Pedersen, Kaspar René Nielsen, Henrik Hjalgrim, Helene M. Paarup, Thomas Werge, Kristoffer Sølvsten Burgdorf
Software Mentions: 3
Published: over 7 years ago

10.1111/jcmm.16323

Construction of a robust prognostic model for adult adrenocortical carcinoma: Results from bioinformatics and real‐world data
Cited by: 8
Author(s): Xi Tian, Wenhao Xu, Aihetaimujiang Anwaier, Hongkai Wang, Fangning Wan, Dalong Cao, Wenjie Luo, Guohai Shi, Yuanyuan Qu, Hai-Liang Zhang, Dingwei Ye
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007892

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans
Cited by: 2
Author(s): Chadi M. Saad-Roy, Nimalan Arinaminpathy, Ned S. Wingreen, Simon A. Levin, Joshua M. Akey, Bryan T. Grenfell
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0230106

In RRP, serologic response to HPV is frequently absent and slow to develop
Cited by: 8
Author(s): Farrel J. Buchinsky, Nicole Ruszkay, William L. Valentino, Craig S. Derkay, John E. McClay, Robert W. Bastian, Charles M. Myer, Kevin W. Lollar, Dalya Güriş
Software Mentions: 3
Published: over 6 years ago

10.1111/jcmm.16594

Single‐cell transcriptome analysis of human oocyte ageing
Cited by: 16
Author(s): Lihua Yuan, Ping Yin, Yan Hua, Xiufang Zhong, Chun‐Xia Ren, Kai Li, Boon Chin Heng, Wuwen Zhang, Guoqing Tong
Software Mentions: 3
Published: about 5 years ago

10.1111/jcmm.16769

Axl‐inhibitor bemcentinib alleviates mitochondrial dysfunction in the unilateral ureter obstruction murine model
Cited by: 8
Author(s): August Hoel, Tarig Al-Hadi Osman, Fredrik Hoel, Hassan Osman Alhassan Elsaid, Tony Chen, Lea Landolt, Janka Bábíčková, Karl Johan Tronstad, James B. Lorens, Gro Gausdal, Hanspeter Marti, Jessica Furriol
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-75513-8

Integration of metabolomics and transcriptomics reveals novel biomarkers in the blood for tuberculosis diagnosis in children
Cited by: 19
Author(s): Noton K. Dutta, Jeffrey A. Tornheim, Kiyoshi F. Fukutani, Mandar Paradkar, Rafael Tibúrcio, Aarti Kinikar, Chhaya Valvi, Vandana Kulkarni, Neeta Pradhan, Shri Vijay Bala Yogendra Shivakumar, Anju Kagal, Akshay Gupte, Nikhil Gupte, Vidya Mave, Amita Gupta, Bruno B. Andrade, Petros C. Karakousis
Software Mentions: 3
Published: over 5 years ago

10.1242/jcs.247957

BCAT1 affects mitochondrial metabolism independently of leucine transamination in activated human macrophages
Cited by: 25
Author(s): Jeong‐Hun Ko, Antoni Olona, Adonia E. Papathanassiu, Norzawani Buang, Kwon-Sik Park, Ana S.H. Costa, Claudio Mauro, Christian Frezza, Jacques Behmoaras
Software Mentions: 3
Published: over 6 years ago

10.3390/molecules22101609

Comparison of Dilution, Filtration, and Microwave Digestion Sample Pretreatments in Elemental Profiling of Wine by ICP-MS
Cited by: 14
Author(s): Joshua Godshaw, Helene Hopfer, Jenny Nelson, Susan E. Ebeler
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0152370

Foraging Behavior of Subantarctic Fur Seals Supports Efficiency of a Marine Reserve’s Design
Cited by: 19
Author(s): Stephen P. Kirkman, Dawit Yemane, Tarron Lamont, Michael A. Meÿer, Pierre A. Pistorius
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0256328

Identifying fungal-host associations in an amphibian host system
Cited by: 4
Author(s): Alexandra Alexiev, Melissa Y. Chen, Valerie J. McKenzie
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-76474-8

Gut microbiota and metabolic health among overweight and obese individuals
Cited by: 60
Author(s): Mi‐Hyun Kim, Kyung Eun Yun, Jimin Kim, Eunkyo Park, Yoosoo Chang, Seungho Ryu, Hyung Lae Kim, Han Na Kim
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0200049

Variation and diversification of the microbiome of Schlechtendalia chinensis on two alternate host plants
Cited by: 8
Author(s): Haixia Wu, Xiaoming Chen, Hang Chen, Qin Lu, Zixiang Yang, Weibin Ren, Juan Liu, Shihe Shao, Chao Wang, Kirst King-Jones, Ming‐Shun Chen
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-74110-z

Modelling and manufacturing of 3D-printed, patient-specific, and anthropomorphic gastric phantoms: a pilot study
Cited by: 9
Author(s): Jinhee Kwon, Joonmyeong Choi, Sangwook Lee, Min-Kyeong Kim, Yoon Kyung Park, Do Hyun Park, Namkug Kim
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0200527

Modulation of the honey bee queen microbiota: Effects of early social contact
Cited by: 36
Author(s): J. Elijah Powell, Daren M. Eiri, Nancy A. Moran, Juliana Rangel
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-017-14487-6

New method for the identification of arbuscular mycorrhizal fungi by proteomic-based biotyping of spores using MALDI-TOF-MS
Cited by: 16
Author(s): Thomas Crossay, Cyril Antheaume, Dirk Redecker, Lucie Bon, Nicolas Chedri, Clément Richert, Linda Guentas, Yvon Cavaloc, Hamid Amir
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-75904-x

Diverse and abundant resistome in terrestrial and aquatic vertebrates revealed by transcriptional analysis
Cited by: 13
Author(s): Yanmei Chen, Edward C. Holmes, Chen Xiao, Jiaxin Tian, Xian-Dan Lin, Xin-Cheng Qin, Wen-Hua Gao, Jing Liu, Zhongdao Wu, Yongzhen Zhang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-76024-2

An in-silico method leads to recognition of hub genes and crucial pathways in survival of patients with breast cancer
Cited by: 17
Author(s): Sepideh Dashti, Mohammad Taheri, Soudeh Ghafouri‐Fard
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-75637-x

Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails
Cited by: 25
Author(s): Maria Kornienko, Nikita Kuptsov, Roman Gorodnichev, Dmitry Bespiatykh, Andrei Guliaev, Maria A. Letarova, Eugene E. Kulikov, Vladimir A. Veselovsky, М В Малахова, Andrey V. Letarov, Elena N. Ilina, Egor Shitikov
Software Mentions: 3
Published: over 5 years ago

10.1042/BSR20202463

Explore prognostic biomarker of bladder cancer based on competing endogenous network
Cited by: 6
Author(s): Faping Li, Hui Guo, Bin Liu, Nian Liu, Zhixiang Xu, Yishu Wang, Honglan Zhou
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2415-13-40

Tear fluid proteomics multimarkers for diabetic retinopathy screening
Cited by: 46
Author(s): Zsuzsa Török, Tünde Pető, Éva Csősz, Edit Tukacs, Ágnes Molnár, Zsuzsanna Maros-Szabó, András Berta, József Tőzsér, András Hajdú, Valéria Nagy, Bálint Domokos, Adrienne Csutak
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41598-020-75163-w

A systematic investigation of human DNA preservation in medieval skeletons
Cited by: 30
Author(s): Cody Parker, Adam Ben Rohrlach, Susanne Friederich, Sarah Nagel, Matthias Meyer, Johannes Krause, Kirsten I. Bos, Wolfgang Haak
Software Mentions: 3
Published: over 5 years ago

10.3390/vaccines9040332

Awareness, Attitudes and Clinical Practices Regarding Human Papillomavirus Vaccination among General Practitioners and Pediatricians in Switzerland
Cited by: 2
Author(s): Levy Jäger, Oliver Senn, Thomas Rosemann, Andreas Plate
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-16633-6

A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
Cited by: 45
Author(s): Jakob Herschend, Zacharias Brimnes Visby Damholt, Andrea Marion Marquard, Birte Svensson, Søren J. Sørensen, Per Hägglund, Mette Burmølle
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-17127-1

A PLAG1 mutation contributed to stature recovery in modern cattle
Cited by: 38
Author(s): Yuri Tani Utsunomiya, Marco Milanesi, Adam Taiti Harth Utsunomiya, Rafaela Beatriz Pintor Torrecilha, Eui-Soo Kim, M. S. Costa, Tamíris Sayuri Aguiar, Steven G. Schroeder, Adriana Santana do Carmo, Roberto Carvalheiro, Haroldo Henrique Rezende Neves, Romulo Cláudio Morozini Padula, Thayla Souza Sussai, Ludmilla Balbo Zavarez, Rafael Silva Cipriano, Maria Margareth Theodoro Caminhas, George Hambrecht, Licia Colli, Elisa Eufemi, Paolo Ajmone‐Marsan, Deneb Cesana, Marco Sannazaro, Maurizio Buora, Michèle Morgante, George E. Liu, Derek M. Bickhart, Curtis P. Van Tassell, Johann Sölkner, Tad S. Sonstegard, José Fernando Garcia
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-17730-2

Constitutively elevated levels of SOCS1 suppress innate responses in DF-1 immortalised chicken fibroblast cells
Cited by: 28
Author(s): Efstathios S. Giotis, CS Ross, RC Robey, Axel Nohturfft, Stephen Goodbourn, Michael A. Skinner
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-74863-7

Biomarker-estimated flavan-3-ol intake is associated with lower blood pressure in cross-sectional analysis in EPIC Norfolk
Cited by: 27
Author(s): Javier I. Ottaviani, Abigail Britten, Debora Lucarelli, Robert Luben, Angela A. Mulligan, Marleen Lentjes, Reedmond Y. Fong, Nicola Gray, Philip B. Grace, Deborah H. Mawson, Amy Tym, Antonia Wierzbicki, Nita G. Forouhi, Kay‐Tee Khaw, Hagen Schroeter, Gunter Georg Kuhnle
Software Mentions: 3
Published: over 5 years ago

10.3390/plants9050592

From Genome to Field—Observation of the Multimodal Nematicidal and Plant Growth-Promoting Effects of Bacillus firmus I-1582 on Tomatoes Using Hyperspectral Remote Sensing
Cited by: 16
Author(s): Nik Susič, Uroš Žibrat, Lovro Sinkovič, Andrej Vončina, Jaka Razinger, M. Knapič, Aleš Sedlar, Saša Širca, Barbara Gerič Stare
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-74651-3

Fecal microbiota transplantation from warthog to pig confirms the influence of the gut microbiota on African swine fever susceptibility
Cited by: 14
Author(s): Jinya Zhang, Fernando Rodrı́guez, María Jesús Navas, Mar Costa-Hurtado, Vanessa Almagro, Laia Bosch-Camós, Elisabeth López, R. Cuadrado, Francesc Accensi, Sonia Pina-Pedrero, Jorge Martínez, Florencia Correa‐Fiz
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-18656-5

Phenology Information Contributes to Reduce Temporal Basis Risk in Agricultural Weather Index Insurance
Cited by: 65
Author(s): Tobias Dalhaus, Oliver Mußhoff, Robert Finger
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-19269-2

Efficient isolation on Vero.DogSLAMtag cells and full genome characterization of Dolphin Morbillivirus (DMV) by next generation sequencing
Cited by: 10
Author(s): Simone Peletto, Claudio Caruso, Francesco Cerutti, Paola Modesto, Cristina Biolatti, Alessandra Pautasso, Carla Grattarola, Federica Giorda, Sandro Mazzariol, Walter Mignone, Loretta Masoero, Cristina Casalone, Pier Luigi Acutis
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms20020401

Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic Profiles
Cited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: over 7 years ago

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