cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1177/0885066618772498

Lower Respiratory Tract Infection and Short-Term Outcome in Patients With Acute Respiratory Distress Syndrome
Cited by: 12
Author(s): Fernando G. Zampieri, Pedro Póvoa, Jorge I. Salluh, Alejandro Rodríguez, Sandrine Valade, José Andrade Gomes, Jean Reignier, Elena Molinos, Jordi Almirall, Nicolas Boussekey, Lorenzo Socías, Paula Ramírez, William N. Viana, Anahita Rouzé, Saad Nseir, Ignacio Martín‐Loeches
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.00129

Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats
Cited by: 8
Author(s): Georgia Thomson‐Laing, Jonathan Puddick, Olivier Laroche, Samantha Fulton, Konstanze Steiner, Mark W. Heath, Susanna A. Wood
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.3001107

Assessment of transparency indicators across the biomedical literature: How open is open?
Cited by: 62
Author(s): Stylianos Serghiou, Despina G. Contopoulos‐Ioannidis, Kevin W. Boyack, Nico Riedel, John R. Wallach, John P. A. Ioannidis
Software Mentions: 4
Published: over 5 years ago

10.1186/s40560-020-00495-8

Linkage of alterations in systemic iron homeostasis to patients’ outcome in sepsis: a prospective study
Cited by: 26
Author(s): Anna Brandtner, Piotr Tymoszuk, Manfred Nairz, Georg Lehner, Gernot Fritsche, Anja Vales, Andreas Falkner, Harald Schennach, Igor Theurl, Michael Joannidis, Günter Weiß, Christa Pfeifhofer-Obermair
Software Mentions: 4
Published: almost 6 years ago

10.3390/antiox10030498

Characterization of NADPH Oxidase Expression and Activity in Acute Myeloid Leukemia Cell Lines: A Correlation with the Differentiation Status
Cited by: 10
Author(s): Hassan Dakik, Maya El Dor, Joan Leclerc, Farah Kouzi, Ali Nehme, Margaux Deynoux, Christelle Debeissat, Georges Khamis, Elfi Ducrocq, Aida Ibrik, Marie‐José Stasia, Houssam Raad, Hamid Reza Rezvani, Fabrice Gouilleux, Kazem Zibara, Olivier Hérault, Frédéric Mazurier
Software Mentions: 4
Published: over 5 years ago

10.1038/s41416-020-01166-z

HOX genes promote cell proliferation and are potential therapeutic targets in adrenocortical tumours
Cited by: 15
Author(s): Jeffrey C. Francis, Jennifer R. Gardiner, Yoan Renaud, Ritika Chauhan, Yacob Weinstein, Celso E. Gómez-Sánchez, Anne‐Marie Lefrançois‐Martinez, Jérôme Bertherat, Pierre Val, Amanda Swain
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-021-07503-7

The molecular signatures of compatible and incompatible pollination in Arabidopsis
Cited by: 9
Author(s): Chie Kodera, Jérémy Just, Martine Da Rocha, Antoine Larrieu, Lucie Riglet, Jonathan Legrand, Frédérique Rozier, Thierry Gaude, Isabelle Fobis-Loisy
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22147699

Impact of Long-Term Enzyme Replacement Therapy on Glucosylsphingosine (Lyso-Gb1) Values in Patients with Type 1 Gaucher Disease: Statistical Models for Comparing Three Enzymatic Formulations
Cited by: 9
Author(s): Tama Dinur, Ulrike Grittner, Shoshana Revel‐Vilk, Michal Becker‐Cohen, Majdolen Istaiti, Claudia Cozma, Arndt Rolfs, Ari Zimran
Software Mentions: 4
Published: about 5 years ago

10.1186/s13020-020-00377-z

Comparison of volatile compounds in different parts of fresh Amomum villosum Lour. from different geographical areas using cryogenic grinding combined HS–SPME–GC–MS
Cited by: 14
Author(s): Lingxiao Chen, Yunfeng Lai, Wei‐Xiong Zhang, Jing Cai, Hao Quan Hu, Ying Wang, Jing Zhao, Shaoping Li
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.5364

Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
Cited by: 218
Author(s): Jacob T. Nearing, Gavin M. Douglas, A. Comeau, Morgan G. I. Langille
Software Mentions: 4
Published: about 8 years ago

10.1038/s41389-020-00245-3

Histoepigenetic analysis of the mesothelin network within pancreatic ductal adenocarcinoma cells reveals regulation of retinoic acid receptor gamma and AKT by mesothelin
Cited by: 6
Author(s): Eugene Lurie, Dongliang Liu, Emily L. LaPlante, Lillian R Thistlethwaite, Qizhi Yao, Aleksandar Milosavljevic
Software Mentions: 4
Published: about 6 years ago

10.1093/molbev/msaa324

Repeated Evolution of Inactive Pseudonucleases in a Fungal Branch of the Dis3/RNase II Family of Nucleases
Cited by: 8
Author(s): Elizabeth R. Ballou, Atlanta G. Cook, Eric Wallace
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203184

The circadian clock is associated with prognosis and immune infiltration in stomach adenocarcinoma
Cited by: 13
Author(s): Zhihao Huang, Aoxiao He, Jiakun Wang, Hongmei Lü, Rongguiyi Zhang, Linquan Wu, Qian Feng
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-79491-9

Effects of climate change and land cover on the distributions of a critical tree family in the Philippines
Cited by: 16
Author(s): Sean E. H. Pang, Jose Don T. De Alban, Edward L. Webb
Software Mentions: 4
Published: over 5 years ago

10.3390/antibiotics9110735

Pathogenic Escherichia coli Possess Elevated Growth Rates under Exposure to Sub-Inhibitory Concentrations of Azithromycin
Cited by: 4
Author(s): Tran Tuan-Anh, Ha Thanh Tuyen, Nguyen Ngoc Minh Chau, Nguyen Duc Toan, Tran Hanh Triet, Le Minh Triet, Nguyen Hoang Thu Trang, Nguyen Thi Nguyen To, Josefin Bartholdson Scott, Duy Pham Thanh, Hannah E. Clapham, Stephen Baker
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12935-020-01238-3

Identification of a m6A RNA methylation regulators-based signature for predicting the prognosis of clear cell renal carcinoma
Cited by: 34
Author(s): Jing Chen, Kun Yu, Guansheng Zhong, Wei Shen
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22147250

Drugs and Epigenetic Molecular Functions. A Pharmacological Data Scientometric Analysis
Cited by: 5
Author(s): Dario Kringel, Sebastian Malkusch, Jörn Lötsch
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-019-6235-7

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
Cited by: 5
Author(s): Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, María Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2021.658988

Rock-Hosted Subsurface Biofilms: Mineral Selectivity Drives Hotspots for Intraterrestrial Life
Cited by: 15
Author(s): Caitlin P. Casar, Brittany R. Kruger, M. R. Osburn
Software Mentions: 4
Published: over 5 years ago

10.1186/s12931-021-01720-0

Lung function trajectories in children with post-prematurity respiratory disease: identifying risk factors for abnormal growth
Cited by: 13
Author(s): Jonathan C. Levin, Catherine A. Sheils, Jonathan M. Gaffin, Craig P. Hersh, Lawrence Rhein, Lystra P. Hayden
Software Mentions: 4
Published: over 5 years ago

10.7150/thno.55645

Deciphering the autophagy regulatory network via single-cell transcriptome analysis reveals a requirement for autophagy homeostasis in spermatogenesis
Cited by: 18
Author(s): Mei Wang, Yanwen Xu, Yuncong Zhang, Yuhan Chen, Gang Chang, Geng An, Xinyan Yang, Caihong Zheng, Jiexiang Zhao, Zhaoting Liu, Dazhuang Wang, Masahiro Kai, Rao S, Meng Dai, Dong Wang, Xiaoyang Zhao
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-021-04787-2

Ecology, seasonality and host preferences of Austrian Phlebotomus (Transphlebotomus) mascittii Grassi, 1908, populations
Cited by: 5
Author(s): Edwin Kniha, Markus Milchram, Vít Dvořák, Petr Halada, Adelheid G. Obwaller, Wolfgang Poeppl, Gerhard Mooseder, Petr Volf, Julia Walochnik
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/9031723

Identification and Analysis of Estrogen Receptor <i>α</i> Promoting Tamoxifen Resistance-Related lncRNAs
Cited by: 11
Author(s): Xiulei Zhang, Shanjun Gao, Zhen Li, Wei Wang, Guangzhi Liu
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-66601-w

Development of a new ‘ultrametric’ method for assessing spawning progression in female teleost serial spawners
Cited by: 9
Author(s): Kling L. Anderson, Maud Alix, Katerina Charitonidou, Anders Thorsén, Grethe Thorsheim, Konstantinos Ganias, Thassya Christina dos Santos Schmidt, Olav Sigurd Kjesbu
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.615481

Microbial Flow Within an Air-Phyllosphere-Soil Continuum
Cited by: 19
Author(s): Shu‐Yi‐Dan Zhou, Hu Li, Madeline Giles, Roy Neilson, Xiao‐Ru Yang, Jian‐Qiang Su
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-018-3248-z

Patterns of Fasciola hepatica infection in Danish dairy cattle: implications for on-farm control of the parasite based on different diagnostic methods
Cited by: 14
Author(s): Nao Takeuchi-Storm, Matthew Denwood, Heidi Huus Petersen, Heidi L. Enemark, Anna‐Sofie Stensgaard, Mita E. Sengupta, Nicola J. Beesley, Jane E. Hodgkinson, Diana Williams, Stig Milan Thamsborg
Software Mentions: 4
Published: over 7 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.1186/s13148-021-01102-9

Blood DNA methylation and COVID-19 outcomes
Cited by: 61
Author(s): Joseph Balnis, Andy Madrid, Kirk Hogan, Lisa A. Drake, Hau Chieng, Anupama Tiwari, Vincent Colot, Amit Chopra, Peter Vincent, Michael D. Robek, Harold A. Singer, Reid S. Alisch, Ariel Jaitovich
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-65578-w

Social environment modulates investment in sex trait versus lifespan: red deer produce bigger antlers when facing more rivalry
Cited by: 9
Author(s): Juan Carranza, F. Javier Pérez‐Barbería, Concha Mateos Martín, Susana Alarcos, Jerónimo Torres-Porras, Javier Pérez‐González, Cristina B. Sánchez-Prieto, Juliana Valencia, Leticia Castillo, Eva de la Peña, Isabel Barja, José Manuel Seoane, Manuel M. Reglero, Antonio Flores, A. Membrillo
Software Mentions: 4
Published: about 6 years ago

10.1186/s12931-021-01755-3

Dysregulation of COVID-19 related gene expression in the COPD lung
Cited by: 22
Author(s): Alastair Watson, Lisa Öberg, B. Angermann, Cosma Spalluto, Michael Hühn, Hannah Burke, Doriana Cellura, Anna Freeman, Daniel Muthas, Damla Etal, Graham Belfield, Fredrik Karlsson, Karl Nordström, Kris Ostridge, Karl Staples, André Freitas
Software Mentions: 4
Published: about 5 years ago

10.1038/bjc.2016.363

Aldo-keto reductases are biomarkers of NRF2 activity and are co-ordinately overexpressed in non-small cell lung cancer
Cited by: 31
Author(s): Annette MacLeod, Lourdes Acosta-Jimenez, Philip J. Coates, Michael McMahon, Frank Carey, Tadashi Honda, Colin J. Henderson, C. Roland Wolf
Software Mentions: 4
Published: almost 10 years ago

10.3389/fmicb.2017.00138

Feeding a High Concentration Diet Induces Unhealthy Alterations in the Composition and Metabolism of Ruminal Microbiota and Host Response in a Goat Model
Cited by: 71
Author(s): Chenlei Hua, Jing Tian, Ping Tian, Rihua Cong, Yanwen Luo, Geng Yang, Shiyu Tao, Yingdong Ni, Ruqian Zhao
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0187079

Immune related gene expression in worker honey bee (Apis mellifera carnica) pupae exposed to neonicotinoid thiamethoxam and Varroa mites (Varroa destructor)
Cited by: 36
Author(s): Tanja Tesovnik, Ivanka Cizelj, Minja Zorc, Manuela Čitar, Janko Božič, Gordana Glavan, Mojca Narat
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-90226-2

Refinement of 16S rRNA gene analysis for low biomass biospecimens
Cited by: 8
Author(s): Remy Villette, Gaëlle Autaa, Sophie Hind, Johanna B. Holm, Alicia Moreno-Sabater, Martin Larsen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.718297

Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales
Cited by: 14
Author(s): Ashley Isaac, Ben Francis, Rudolf Amann, Shady A. Amin
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-6544-x

Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France
Cited by: 51
Author(s): Federica Di Palma, Thomas Brauge, Nicolas Radomski, Ludovic Mallet, Arnaud Felten, Michel‐Yves Mistou, Anne Brisabois, Laurent Guillier, Graziella Midelet-Bourdin
Software Mentions: 4
Published: over 6 years ago

10.1186/s13041-020-00685-3

Neuronal activity regulates alternative exon usage
Cited by: 5
Author(s): Johanna Denkena, Andrea Zaisser, Barbara Merz, Bertram Klinger, Dietmar Kuhl, Nils Blüthgen, Guido Hermey
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-020-6483-6

Virus expression detection reveals RNA-sequencing contamination in TCGA
Cited by: 21
Author(s): Sara R. Selitsky, David Marron, Daniel P. Hollern, Lisle E. Mose, Katherine A. Hoadley, Corbin D. Jones, Joel S. Parker, Dirk P. Dittmer, Charles M. Perou
Software Mentions: 4
Published: over 6 years ago

10.1038/s41388-019-1047-4

Targeting chemoresistant colorectal cancer via systemic administration of a BMP7 variant
Cited by: 23
Author(s): Veronica Veschi, Laura Rosa Mangiapane, Antonietta Nicotra, Simone Di Franco, Emanuela Scavo, Tiziana Apuzzo, Davide Stefano Sardina, Micol Eleonora Fiori, Antonina Benfante, Maria Luisa Colorito, Gianfranco Cocorullo, Felice Giuliante, Calogero Cipolla, Giuseppe Pistone, Maria Rita Bongiorno, Aroldo Rizzo, Courtney M. Tate, Xiaohua Wu, Scott W. Rowlinson, Louis F. Stancato, Matilde Todaro, Ruggero De Maria, Giorgio Stassi
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0230566

Genetic compensation in a stable slc25a46 mutant zebrafish: A case for using F0 CRISPR mutagenesis to study phenotypes caused by inherited disease
Cited by: 35
Author(s): Elena Buglo, Evan Sarmiento, Nicole Belliard Martuscelli, David W. Sant, Matt C. Danzi, A. Jeanine Abrams, Julia E. Dallman, Stephan Züchner
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-65952-8

Effects of nitrogen deposition and litter layer management on soil CO2, N2O, and CH4 emissions in a subtropical pine forestland
Cited by: 11
Author(s): Jianling Fan, Xueyong Pang, B.G. McConkey, Noura Ziadi
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.37927

Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
Cited by: 36
Author(s): Julien Bischerour, Simran Bhullar, Cyril Denby Wilkes, Vinciane Régnier, Nathalie Mathy, Emeline Dubois, Aditi Singh, Estienne C. Swart, Olivier Arnaiz, Linda Sperling, Mariusz Nowacki, Mireille Bétermier
Software Mentions: 4
Published: almost 8 years ago

10.1017/S0031182020001018

Cross-infectivity of honey and bumble bee-associated parasites across three bee families
Cited by: 29
Author(s): Lyna Ngor, Evan C. Palmer‐Young, Rodrigo Burciaga Nevarez, Kaleigh A. Russell, Laura Leger, Sara June Giacomini, Mario S Pinilla-Gallego, Rebecca E. Irwin, Quinn S. McFrederick
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-06461-z

Status, Stress and Performance in Track and Field Athletes during the European Games in Baku (Azerbaijan)
Cited by: 13
Author(s): Benjamin Siart, Alfred Nimmerichter, Claudia Vidotto, Bernard Wallner
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-06373-y

Ecologically relevant levels of multiple, common marine stressors suggest antagonistic effects
Cited by: 18
Author(s): Rolanda Lange, Dustin J. Marshall
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: over 5 years ago

10.1099/mgen.0.000338

Coinfinder: detecting significant associations and dissociations in pangenomes
Cited by: 33
Author(s): Fiona Whelan, Martin Rusilowicz, James O. McInerney
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.586614

Deciphering Microbial Community Dynamics and Biochemical Changes During Nyons Black Olive Natural Fermentations
Cited by: 18
Author(s): Marine Penland, Stéphanie-Marie Deutsch, Hélène Falentin, Audrey Pawtowski, Elisabeth Poirier, Giorgia Visenti, Christophe Le Meur, Marie-Bernadette Maillard, Anne Thierry, Jérôme Mounier, Monika Coton
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.01641

Enhanced Killing and Antibiofilm Activity of Encapsulated Cinnamaldehyde against Candida albicans
Cited by: 57
Author(s): Shahper N. Khan, Shakir Khan, Jawaid Iqbal, Rosina Khan, Asad Khan
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13148-020-00854-0

The sperm epigenome does not display recurrent epimutations in patients with severely impaired spermatogenesis
Cited by: 21
Author(s): Elsa Leitão, Sara Di Persio, Sandra Laurentino, Marius Wöste, Martin Dugas, Sabine Kliesch, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0238420

Construction and analysis of a competing endogenous RNA network to reveal potential prognostic biomarkers for Oral Floor Squamous Cell Carcinoma
Cited by: 1
Author(s): Wenjing Zhang, Shuai Xu, Laner Shi, Zhangzhi Zhu, Xinying Xie
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13148-021-01090-w

Identification of prognosis-related molecular subgroups based on DNA methylation in pancreatic cancer
Cited by: 6
Author(s): Xiaoli Yin, Lingming Kong, Peng Liu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41416-019-0468-8

Risk of cardiovascular events in men treated for prostate cancer compared with prostate cancer-free men
Cited by: 8
Author(s): Ida Rask Moustsen-Helms, Signe Benzon Larsen, Anne Katrine Duun‐Henriksen, Anne Tjønneland, Susanne K. Kjær, Klaus Brasso, Christoffer Johansen, Susanne Oksbjerg Dalton
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-021-07646-7

Transcriptomic analysis reveals pronounced changes in gene expression due to sub-lethal pyrethroid exposure and ageing in insecticide resistance Anopheles coluzzii
Cited by: 18
Author(s): Victoria A. Ingham, Faye Brown, Hilary Ranson
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.01249

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration
Cited by: 12
Author(s): Laura Zinke, Brandi Kiel Reese, James McManus, C. G. Wheat, Beth N. Orcutt, Jan P. Amend
Software Mentions: 4
Published: about 8 years ago

10.1186/s13195-021-00892-7

Leukotriene receptor antagonist use and cognitive decline in normal cognition, mild cognitive impairment, and Alzheimer’s dementia
Cited by: 10
Author(s): Lisa Y. Xiong, Michael Ouk, Che‐Yuan Wu, Jennifer S. Rabin, Krista L. Lanctôt, Nathan Herrmann, Sandra E. Black, Jodi D. Edwards, Walter Swardfager
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0142707

State-Space Modelling of the Drivers of Movement Behaviour in Sympatric Species
Cited by: 12
Author(s): F. Javier Pérez‐Barbería, Michael Small, R. J. Hooper, A. Aldezábal, Ramón C. Soriguer-Escofet, George S. Bakken, Iain J. Gordon
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12977-020-00544-y

Comparative analysis of human microglial models for studies of HIV replication and pathogenesis
Cited by: 34
Author(s): Ammara Mohammad, J. Hammonds, Mario Pujato, Christopher N. Mayhew, Krishna M. Roskin, Paul Spearman
Software Mentions: 4
Published: almost 6 years ago

10.18632/aging.202781

One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
Cited by: 3
Author(s): Baoquan Han, Lu Wang, Shuai Yu, Wei Ge, Yaqi Li, Hui Jiang, Wei Shen, Zhongyi Sun
Software Mentions: 4
Published: over 5 years ago

10.1186/s12941-021-00428-9

The impact of urine microbiota in patients with lower urinary tract symptoms
Cited by: 15
Author(s): Hsiang Ying Lee, Jiunn‐Wei ‐W Wang, Yung Shun Juan, Ching Chia Li, Chung‐Jung Liu, Sung Yong Cho, Hsin Chih Yeh, Kuang Shun Chueh, Wen Jeng Wu, Deng‐Chyang Wu
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: about 5 years ago

10.7150/thno.35573

Genome-wide discovery and validation of diagnostic DNA methylation-based biomarkers for hepatocellular cancer detection in circulating cell free DNA
Cited by: 54
Author(s): Ryan A. Hlady, Zhao Xiao, Xiaoyu Pan, Ju Dong Yang, Fowsiyo Ahmed, Samuel O. Antwi, Nasra H. Giama, Tushar Patel, Lewis R. Roberts, Chen Liu, Keith D. Robertson
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.00982

Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies
Cited by: 27
Author(s): Carla Perez-Mon, Beat Frey, Aline Frossard
Software Mentions: 4
Published: over 6 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago

10.18632/aging.103083

Nudix hydrolase 1 is a prognostic biomarker in hepatocellular carcinoma
Cited by: 6
Author(s): Qifeng Ou, Ning Ma, Zhenzhen Yu, Rongchang Wang, Yucheng Hou, Ziming Wang, Fan Chen, Wen Li, Jiong Bi, Jiachi Ma, Longjuan Zhang, Shan Qiao, Xiaohui Huang
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.703014

Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds
Cited by: 14
Author(s): Flavia Tarquinio, Océane Attlan, Mathew A. Vanderklift, Oliver Berry, Andrew Bissett
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.67305

ZC3H4 restricts non-coding transcription in human cells
Cited by: 24
Author(s): Chris Estell, Lee Davidson, Pieter C. Steketee, Adam Monier, Steven West
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.62927

Cancer immunotherapy by NC410, a LAIR-2 Fc protein blocking human LAIR-collagen interaction
Cited by: 30
Author(s): M I Ramos, Linjie Tian, Emma J. de Ruiter, Chang Song, Ana Paucarmayta, Akashdip Singh, Eline Elshof, Saskia V. Vijver, Jahangheer Shaik, Jason Bosiacki, Zachary Cusumano, Christina Jensen, Nicholas Willumsen, Morten A. Karsdal, Linda Liu, Sol Langermann, Stefan M. Willems, Dallas B. Flies, Linde Meyaard
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95739-4

Assessing effectiveness of exclusion fences in protecting threatened plants
Cited by: 6
Author(s): Juan Lorite, Carlos Salazar-Mendías, Roza Pawlak, Eva M. Cañadas
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01048-3

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Cited by: 28
Author(s): Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Masami Matsuda, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama, Atsushi Yamazoe, Yuichi Uchino, Keishi Kameyama, Shingo Arioka, Jiro Kataoka, Takayoshi Hisada, Kazuyuki Fujii, Shunsuke Takahashi, Miho Kuroiwa, Masatomo Rokushima, Mitsue Nishiyama, Yoshiki Tanaka, Takuya Fuchikami, Hitomi Aoki, Satoshi Kira, Ryo Koyanagi, Takeshi Naito, Morie Nishiwaki, Hirotaka Kumagai, Mikiko Konda, Keiji Kasahara, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi, Jun Terauchi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0245243

Potential role of the skin and gut microbiota in premenarchal vulvar lichen sclerosus: A pilot case-control study
Cited by: 13
Author(s): Suhana Chattopadhyay, Justin D. Arnold, Leena Malayil, Lauren E. Hittle, Emmanuel F. Mongodin, Kalyani Marathe, Veronica Gómez-Lobo, Amy R. Sapkota
Software Mentions: 4
Published: over 5 years ago

10.1093/cid/ciz1186

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants
Cited by: 33
Author(s): Alaric W. D’Souza, Eshia Moodley-Govender, Bertram M. Berla, Tejas Kelkar, Bin Wang, Xiaoqing Sun, Brodie Daniels, Anna Coutsoudis, Indi Trehan, Gautam Dantas
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0230276

suddengains: An R package to identify sudden gains in longitudinal data
Cited by: 9
Author(s): Milan Wiedemann, Graham R. Thew, Richard Stott, Anke Ehlers
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-95544-z

Seasonal and geographic variation in packed cell volume and selected serum chemistry of platypuses
Cited by: 0
Author(s): J.W.B. Stewart, Gilad Bino, Tahneal Hawke, Richard T. Kingsford
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.01092

Detecting Introgression Between Members of the Fusarium fujikuroi and F. oxysporum Species Complexes by Comparative Mitogenomics
Cited by: 8
Author(s): Balázs Brankovics, A.D. van Diepeningen, G. Sybren de Hoog, Theo A. J. van der Lee, C. Waalwijk
Software Mentions: 4
Published: about 6 years ago

10.1136/jitc-2020-001610

Neoadjuvant chemoradiation alters biomarkers of anticancer immunotherapy responses in locally advanced rectal cancer
Cited by: 17
Author(s): Incheol Seo, Hye Won Lee, Sang Jun Byun, Jee Young Park, Hyeonji Min, Sung Hwan Lee, Ju-Seog Lee, Shin Kim, Sung Uk Bae
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22157804

Skin Wound Healing Rate in Fish Depends on Species and Microbiota
Cited by: 9
Author(s): Tery Yun, Soeun Shin, Kyungwon Bang, Mugeun Lee, Jung-Ah Cho, Min Won Baek
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95284-0

Neonicotinoids can cause arrested pupal ecdysis in Lepidoptera
Cited by: 4
Author(s): Niranjana Krishnan, Russell A. Jurenka, Steven P. Bradbury
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000358

Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen
Cited by: 30
Author(s): Teresa R. O’Meara, Matthew J. O’Meara, Elizabeth J. Polvi, Mohammad Reza Pourhaghighi, Sean D. Liston, Zhen‐Yuan Lin, Amanda O. Veri, Andrew Emili, Anne‐Claude Gingras, Leah E. Cowen
Software Mentions: 4
Published: about 7 years ago

10.1016/j.molcel.2018.10.018

Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor
Cited by: 32
Author(s): Andrew Wu, Harshil Patel, Minghao Chia, Fabien Moretto, David Frith, Ambrosius P. Snijders, Folkert J. van Werven
Software Mentions: 4
Published: over 7 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0176762

Indexical and linguistic processing by 12-month-olds: Discrimination of speaker, accent and vowel differences
Cited by: 12
Author(s): Karen E. Mulak, Cory D. Bonn, Kateřina Chládková, Richard Ν. Aslin, Paola Escudero
Software Mentions: 4
Published: over 9 years ago

10.1007/s00404-019-05336-0

Changes in intestinal microflora in digestive tract diseases during pregnancy
Cited by: 20
Author(s): Min Jin, Dong Li, Rui Ji, Wen Li, Xiaofei Xu, Yanqing Li
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.700152

Single-Cell Transcriptomic Profiling of MAIT Cells in Patients With COVID-19
Cited by: 16
Author(s): Jiandang Shi, Jianglin Zhou, Xiaochang Zhang, Wei Hu, Jinfang Zhao, Shengqi Wang, Fusheng Wang, Jiyuan Zhang
Software Mentions: 3
Published: about 5 years ago

10.3906/biy-2005-21

Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence
Cited by: 4
Author(s): Gökhan Karakülah, Cihangir Yandım
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5313-6

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Cited by: 70
Author(s): Cormac Brian Fitzgerald, Andrey N. Shkoporov, Thomas D.S. Sutton, Andrei V. Chaplin, Vimalkumar Velayudhan, R. Paul Ross, Colin Hill
Software Mentions: 3
Published: over 7 years ago

10.3390/ani11092549

Data Collection for the Fourth Multicentre Confidential Enquiry into Perioperative Equine Fatalities (CEPEF4) Study: New Technology and Preliminary Results
Cited by: 13
Author(s): Miguel Gozalo‐Marcilla, Regula Bettschart‐Wolfensberger, Mark Johnston, Polly Taylor, J. I. Redondo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13071-017-2075-y

Serological evidence of exposure to Rickettsia felis and Rickettsia typhi in Australian veterinarians
Cited by: 21
Author(s): Yen Thon Teoh, Sze Fui Hii, Mark Stevenson, Stephen Graves, Robert Rees, John Stenos, Rebecca J. Traub
Software Mentions: 3
Published: over 9 years ago

10.1186/s40168-017-0373-4

The gut mycobiome of the Human Microbiome Project healthy cohort
Cited by: 526
Author(s): Andrea K. Nash, Thomas A. Auchtung, Matthew C. Wong, Daniel P. Smith, Jonathan R. Gesell, Matthew C. Ross, Christopher J. Stewart, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Nadim J. Ajami, Joseph F. Petrosino
Software Mentions: 3
Published: almost 9 years ago

10.3389/fimmu.2021.677169

ERO1L Is a Novel and Potential Biomarker in Lung Adenocarcinoma and Shapes the Immune-Suppressive Tumor Microenvironment
Cited by: 9
Author(s): L. Liu, Chao Wang, Sini Li, Yan Qu, Ping Xue, Zixiao Ma, Xue Zhang, Hua Bai, Jie Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s13063-021-05482-4

The implications of outcome truncation in reproductive medicine RCTs: a simulation platform for trialists and simulation study
Cited by: 4
Author(s): Jack Wilkinson, Jonathan Huang, Antonia Marsden, Michael O. Harhay, Andy Vail, Stephen A Roberts
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2164-15-597

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera
Cited by: 73
Author(s): Nai-Yong Liu, Wei Xü, Alexie Papanicolaou, Shuang-Lin Dong, Alisha Anderson
Software Mentions: 3
Published: about 12 years ago

10.1080/21623945.2021.1889815

Effects of non-vascularized adipose tissue transplantation on its genetic profile
Cited by: 1
Author(s): Jeannine Susanne Schreiter, Olga Kurow, Stefan Langer, M. Steinert, Lucas Massier
Software Mentions: 3
Published: over 5 years ago

10.1186/s13063-018-2681-9

Evaluation of the clinical effectiveness of bioactive glass (S53P4) in the treatment of non-unions of the tibia and femur: study protocol of a randomized controlled non-inferiority trial
Cited by: 11
Author(s): Michael C. Tanner, Raban Arved Heller, Fabian Westhauser, Matthias Miska, Thomas Ferbert, Christian Fischer, Simone Gantz, Gerhard Schmidmaier, Patrick Haubruck
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2017.00543

Horses in Denmark Are a Reservoir of Diverse Clones of Methicillin-Resistant and -Susceptible Staphylococcus aureus
Cited by: 52
Author(s): Zohorul Islam, Carmen Espinosa-Gongora, Peter Damborg, Raphael N. Sieber, Rikke Munk, Louise Husted, Arshnee Moodley, Robert Skov, Jesper Larsen, Luca Guardabassi
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms22136673

Loss of Wnt16 Leads to Skeletal Deformities and Downregulation of Bone Developmental Pathway in Zebrafish
Cited by: 7
Author(s): Xiaochao Qu, Mei Liao, Weiwei Liu, Yisheng Cai, Qiao-Rong Yi, Long Jiang, Lijun Tan, Yuan Deng, Hong‐Wen Deng, Xiang‐Ding Chen
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.01603

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription
Cited by: 14
Author(s): Felix Grünberger, Robert Reichelt, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Reinhard Rachel, Dina Grohmann, Winfried Hausner
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.574815

The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity Regimes
Cited by: 5
Author(s): João P. Santos, António G G Sousa, Hugo Leonardo Coelho Ribeiro, Catarina Magalhães
Software Mentions: 3
Published: over 5 years ago

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