cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fonc.2021.680918

Hippo Pathway Core Genes Based Prognostic Signature and Immune Infiltration Patterns in Lung Squamous Cell Carcinoma
Cited by: 26
Author(s): Chang Gu, Jiafei Chen, Xuening Dang, Chunji Chen, Zhenyu Huang, Weidong Shen, Xin Shi, Chenyang Dai, Chang Chen
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-019-0715-5

Active eukaryotes in drinking water distribution systems of ground and surface waterworks
Cited by: 21
Author(s): Jenni Inkinen, Balamuralikrishna Jayaprakash, Sallamaari Siponen, Anna-Maria Hokajärvi, Anna Pursiainen, Jenni Ikonen, Ivan Ryzhikov, Martin Täubel, Ari Kauppinen, Jussi Paananen, Ilkka T. Miettinen, Eila Torvinen, Mikko Kolehmainen, Tarja Pitkänen
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2020.526009

Prediction of Postoperative Ileus in Patients With Colorectal Cancer by Preoperative Gut Microbiota
Cited by: 14
Author(s): Ye Jin, Rui Geng, Yang Liu, Lujia Liu, Xiangren Jin, Fuya Zhao, Jing Feng, Yunwei Wei
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00162

Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry
Cited by: 24
Author(s): Hanna Engqvist, Toshima Z. Parris, Anikó Kovács, Elisabeth Werner Rönnerman, Karin Sundfeldt, Per Karlsson, Khalil Helou
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.517637

The Landscape of Immune Cells Infiltrating in Prostate Cancer
Cited by: 54
Author(s): Zhicong Wu, Hua Chen, Wenyang Luo, Hanyun Zhang, Guihuan Li, Fanning Zeng, Fan Deng
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01048-3

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Cited by: 28
Author(s): Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Masami Matsuda, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama, Atsushi Yamazoe, Yuichi Uchino, Keishi Kameyama, Shingo Arioka, Jiro Kataoka, Takayoshi Hisada, Kazuyuki Fujii, Shunsuke Takahashi, Miho Kuroiwa, Masatomo Rokushima, Mitsue Nishiyama, Yoshiki Tanaka, Takuya Fuchikami, Hitomi Aoki, Satoshi Kira, Ryo Koyanagi, Takeshi Naito, Morie Nishiwaki, Hirotaka Kumagai, Mikiko Konda, Keiji Kasahara, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi, Jun Terauchi
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2021.700489

Comparative Transcriptome Analysis of Milk Somatic Cells During Lactation Between Two Intensively Reared Dairy Sheep Breeds
Cited by: 4
Author(s): Sofia Michailidou, Athanasios Ι. Gelasakis, Georgios Banos, G. Arsenos, Anagnostis Argiriou
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-45237-5

A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells
Cited by: 23
Author(s): Chi Nguyen, Sebastian Malchow, Stefan Reich, Sascha Steltgens, Konstantin V. Shuvaev, Stefan Loroch, Christin Lorenz, Albert Sickmann, Christiane B. Knobbe-Thomsen, Björn Tews, Jan Medenbach, Robert Ahrends
Software Mentions: 4
Published: about 7 years ago

10.1186/s13148-021-01102-9

Blood DNA methylation and COVID-19 outcomes
Cited by: 61
Author(s): Joseph Balnis, Andy Madrid, Kirk Hogan, Lisa A. Drake, Hau Chieng, Anupama Tiwari, Vincent Colot, Amit Chopra, Peter Vincent, Michael D. Robek, Harold A. Singer, Reid S. Alisch, Ariel Jaitovich
Software Mentions: 4
Published: about 5 years ago

10.1186/s13148-020-00854-0

The sperm epigenome does not display recurrent epimutations in patients with severely impaired spermatogenesis
Cited by: 21
Author(s): Elsa Leitão, Sara Di Persio, Sandra Laurentino, Marius Wöste, Martin Dugas, Sabine Kliesch, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 4
Published: about 6 years ago

10.1186/s13148-021-01090-w

Identification of prognosis-related molecular subgroups based on DNA methylation in pancreatic cancer
Cited by: 6
Author(s): Xiaoli Yin, Lingming Kong, Peng Liu
Software Mentions: 4
Published: about 5 years ago

10.1186/s13020-020-00377-z

Comparison of volatile compounds in different parts of fresh Amomum villosum Lour. from different geographical areas using cryogenic grinding combined HS–SPME–GC–MS
Cited by: 14
Author(s): Lingxiao Chen, Yunfeng Lai, Wei‐Xiong Zhang, Jing Cai, Hao Quan Hu, Ying Wang, Jing Zhao, Shaoping Li
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-45364-z

Disease-free monoculture farming by fungus-growing termites
Cited by: 31
Author(s): Saria Otani, Victoria L. Challinor, Nina B. Kreuzenbeck, Sara Kildgaard, Søren Krath Christensen, Louise Lee Munk Larsen, Duur K. Aanen, Silas Anselm Rasmussen, Christine Beemelmanns, Michael Poulsen
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-46018-w

Changes in the composition and function of bacterial communities during vermicomposting may explain beneficial properties of vermicompost
Cited by: 66
Author(s): Jorge Domínguez, Manuel Aira, Allison R. Kolbe, María Gómez-Brandòn, Marcos Pérez‐Losada
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-45432-4

Neighbourhood socioeconomic deprivation and allostatic load: a multi-cohort study
Cited by: 28
Author(s): Ana Isabel Ribeiro, Sílvia Fraga, Michelle Kelly-Irving, Cyrille Delpierre, Silvia Stringhini, Mika Kivimäki, Stéphane Joost, Idris Guessous, Martina Gandini, Paolo Víneis, Henrique Barros
Software Mentions: 4
Published: about 7 years ago

10.3390/cancers12071816

Characterization of Class-3 Semaphorin Receptors, Neuropilins and Plexins, as Therapeutic Targets in a Pan-Cancer Study
Cited by: 16
Author(s): Xiaoli Zhang, Shuai Shao, Lang Li
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.baae.2020.09.009

Nutrient status not secondary metabolites drives herbivory and pathogen infestation across differently mycorrhized tree monocultures and mixtures
Cited by: 5
Author(s): Olga Ferlian, Esther-Marie Lintzel, Helge Bruelheide, Carlos A. Guerra, Heike Heklau, Stephanie D. Jurburg, Paul Kühn, Ainhoa Martínez‐Medina, Sybille B. Unsicker, Nico Eisenhauer, Martin Schädler
Software Mentions: 4
Published: almost 5 years ago

10.3390/cancers13123054

Myeloid-Specific Acly Deletion Alters Macrophage Phenotype In Vitro and In Vivo without Affecting Tumor Growth
Cited by: 6
Author(s): Kyra E. de Goede, Sanne G.S. Verberk, Jeroen Baardman, Karl J. Harber, Yvette van Kooyk, Menno P.J. de Winther, Sjoerd Schetters, Jan Van den Bossche
Software Mentions: 4
Published: about 5 years ago

10.1093/cid/ciz1186

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants
Cited by: 33
Author(s): Alaric W. D’Souza, Eshia Moodley-Govender, Bertram M. Berla, Tejas Kelkar, Bin Wang, Xiaoqing Sun, Brodie Daniels, Anna Coutsoudis, Indi Trehan, Gautam Dantas
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-47089-5

Quantitative Mass Spectrometry Imaging Reveals Mutation Status-independent Lack of Imatinib in Liver Metastases of Gastrointestinal Stromal Tumors
Cited by: 33
Author(s): Denis A. Sammour, Christian Marsching, Alexander Geisel, Katrin Erich, Sandra Schulz, Carina Ramallo Guevara, Jan Rabe, Alexander Marx, Peter Findeisen, Peter Hohenberger, Carsten Hopf
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnut.2020.00126

Seed Composition and Amino Acid Profiles for Quinoa Grown in Washington State
Cited by: 23
Author(s): Evan B. Craine, Kevin M. Murphy
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-47533-6

Stoichiogenomics reveal oxygen usage bias, key proteins and pathways associated with stomach cancer
Cited by: 6
Author(s): Xiaoyan Zuo, Bo Li, Chengxu Zhu, Yan Zeng, Miao Li, Xinyi Wang, Yujuan Zhang
Software Mentions: 4
Published: almost 7 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2019.01862

Catabolism of Alkylphenols in Rhodococcus via a Meta-Cleavage Pathway Associated With Genomic Islands
Cited by: 14
Author(s): David J. Levy‐Booth, Morgan M. Fetherolf, Gordon R. Stewart, Jiu Liu, Lindsay D. Eltis, William W. Mohn
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-48166-5

Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis
Cited by: 12
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 4
Published: almost 7 years ago

10.3390/cancers12123639

Single-Cell RNA Sequencing of a Postmenopausal Normal Breast Tissue Identifies Multiple Cell Types That Contribute to Breast Cancer
Cited by: 13
Author(s): Sen Peng, Lora L. Hebert, Jennifer Eschbacher, Suwon Kim
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12071778

Potential Added Value of PET/CT Radiomics for Survival Prognostication beyond AJCC 8th Edition Staging in Oropharyngeal Squamous Cell Carcinoma
Cited by: 32
Author(s): Stefan P. Haider, Tal Zeevi, Philipp Baumeister, Christoph Reichel, Kariem Sharaf, Reza Forghani, Benjamin H. Kann, Benjamin L. Judson, Manju L. Prasad, Barbara Burtness, Amit Mahajan, Sam Payabvash
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-48665-5

Near-future ocean acidification does not alter the lipid content and fatty acid composition of adult Antarctic krill
Cited by: 11
Author(s): Jessica A. Ericson, Nicole Hellessey, So Kawaguchi, Peter D. Nichols, Stephen Nicol, Nils Hoem, Patti Virtue
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-50046-x

Autoregulation assessment by direct visualisation of pial arterial blood flow in the piglet brain
Cited by: 13
Author(s): Samuel Patrick Klein, Veerle De Sloovere, Geert Meyfroidt, Bart Depreitere
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-017-06373-y

Ecologically relevant levels of multiple, common marine stressors suggest antagonistic effects
Cited by: 18
Author(s): Rolanda Lange, Dustin J. Marshall
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-06461-z

Status, Stress and Performance in Track and Field Athletes during the European Games in Baku (Azerbaijan)
Cited by: 13
Author(s): Benjamin Siart, Alfred Nimmerichter, Claudia Vidotto, Bernard Wallner
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-49952-x

The polymorphic variant rs1800734 influences methylation acquisition and allele-specific TFAP4 binding in the MLH1 promoter leading to differential mRNA expression
Cited by: 6
Author(s): Russell J. Thomas, Davide Trapani, Lily Goodyer-Sait, Markéta Tomková, Ceres Fernández–Rozadilla, Nora Sahnane, Connor Woolley, Hayley L. Belnoue-Davis, Laura Chegwidden, Skirmantas Kriaucionis, Tim Maughan, Simon J. Leedham, Claire Palles, Daniela Furlan, Ian Tomlinson, Annabelle Lewis
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2019.00232

Central and Peripheral Changes in FOS Expression in Schizophrenia Based on Genome-Wide Gene Expression
Cited by: 10
Author(s): Jing Huang, Fangkun Liu, Bolun Wang, Hui Tang, Ziwei Teng, Lehua Li, Yan Qiu, Haishan Wu, Jindong Chen
Software Mentions: 4
Published: over 7 years ago

10.3390/nu12113450

Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
Cited by: 7
Author(s): Natalie Shenker, Alvaro Perdones‐Montero, Adam Burke, Sarah Stickland, Julie A. K. McDonald, Kate Alexander-Hardiman, James M. Flanagan, Zoltan Takáts, Simon Cameron
Software Mentions: 4
Published: over 5 years ago

10.1002/cti2.1190

BDCA1 + cDC2s, BDCA2 + pDCs and BDCA3 + cDC1s reveal distinct pathophysiologic features and impact on clinical outcomes in melanoma patients
Cited by: 11
Author(s): Eleonora Sosa Cuevas, Laurissa Ouaguia, Stéphane Mouret, J. Charles, Florence de Fraipont, Olivier Manches, Jenny Valladeau‐Guilemond, Nathalie Bendriss‐Vermare, Laurence Chaperot, Caroline Aspord
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-48963-y

Daylight affects human thermal perception
Cited by: 64
Author(s): Giorgia Chinazzo, Jan Wienold, Marilyne Andersen
Software Mentions: 4
Published: almost 7 years ago

10.1099/mgen.0.000484

Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia
Cited by: 14
Author(s): Ebenezer Foster-Nyarko, Nabil-Fareed Alikhan, Anuradha Ray, Nicholas M. Thomson, Sheikh Jarju, Brenda Kwambana-Adams, Arss Secka, Justin O’Grady, Martín Antonio, Mark J. Pallen
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0209449

Lexical category acquisition is facilitated by uncertainty in distributional co-occurrences
Cited by: 5
Author(s): Giovanni Cassani, Robert Grimm, Walter Daelemans, Steven Gillis
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms19082186

The Small Yeast GTPase Rho5 and Its Dimeric GEF Dck1/Lmo1 Respond to Glucose Starvation
Cited by: 13
Author(s): Hans‐Peter Schmitz, Arne Jendretzki, Carolin Sterk, Jürgen J. Heinisch
Software Mentions: 4
Published: almost 8 years ago

10.1264/jsme2.ME18107

Deciphering the Assembly Processes of the Key Ecological Assemblages of Microbial Communities in Thirteen Full-Scale Wastewater Treatment Plants
Cited by: 13
Author(s): Liyuan Hou, Anyi Hu, Shaohua Chen, Kaisong Zhang, Sandi Orlić, Abbas Rashid, Chang-Ping Yu
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-02193-2

Multitrophic Effects of Belowground Parasitoid Learning
Cited by: 17
Author(s): Denis S. Willett, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 4
Published: about 9 years ago

10.3390/ijms19102894

Inhibitory Effect of Methotrexate on Rheumatoid Arthritis Inflammation and Comprehensive Metabolomics Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole Time of Flight-Mass Spectrometry (UPLC-Q/TOF-MS)
Cited by: 30
Author(s): Zhiqiang Pang, Guoqiang Wang, Nan Ran, Hongqiang Lin, Ziyan Wang, Xuewa Guan, Yuze Yuan, Keyong Fang, Jinping Liu, Fang Wang
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-01126-3

Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments
Cited by: 106
Author(s): Arghya Mukherjee, Bobby Chettri, James S. Langpoklakpam, Pijush Basak, Aravind Prasad, Ashis K. Mukherjee, Maitree Bhattacharyya, Arvind Singh, Dhrubajyoti Chattopadhyay
Software Mentions: 4
Published: about 9 years ago

10.3389/fnut.2020.00083

Vitamin B12 Deficiency Alters the Gut Microbiota in a Murine Model of Colitis
Cited by: 37
Author(s): Eberhard Lurz, Rachael Horne, Pekka Määttänen, Richard Wu, Steven R. Botts, Bo Li, Laura Rossi, Kathene C. Johnson‐Henry, Agostino Pierro, Michael G. Surette, Philip M. Sherman
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0192133

Extrinsic grouping factors in motion-induced blindness
Cited by: 3
Author(s): Dina Devyatko, Alexander Pastukhov
Software Mentions: 4
Published: over 8 years ago

10.1186/s41235-021-00277-2

Searching in CCTV: effects of organisation in the multiplex
Cited by: 0
Author(s): Benjamin W. Tatler
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-50885-8

Improved gene co-expression network quality through expression dataset down-sampling and network aggregation
Cited by: 25
Author(s): Franziska Liesecke, Johan-Owen De Craene, Sébastien Besseau, Vincent Courdavault, Marc Clastre, Valentin Vergès, Nicolas Papon, Nathalie Giglioli-Guivarc’h, Gaëlle Glévarec, Olivier Pichon, Thomas Dugé de Bernonville
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51211-y

Long-term efficacy of imatinib mesylate in patients with advanced Tenosynovial Giant Cell Tumor
Cited by: 38
Author(s): Floortje G M Verspoor, Monique J L Mastboom, Gerjon Hannink, Robert G. Maki, Andrew J. Wagner, Emmanuelle Bompas, Jayesh Desai, Antoîne Italiano, Beatrice Seddon, Winette T.A. van der Graaf, Jean‐Yves Blay, Mehdi Brahmi, Lauriane Eberst, Silvia Stacchiotti, Olivier Mir, Michiel A.J. van de Sande, Hans Gelderblom, P. A. Cassier
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51118-8

Extensive vegetation browning and drying in forests of India’s Tiger Reserves
Cited by: 7
Author(s): Pradeep Koulgi, Nicholas Clinton, Krithi K. Karanth
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms19103265

Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites
Cited by: 19
Author(s): Bernardus C. J. Schimmel, Juan M. Alba, Nicky Wybouw, Joris J. Glas, Tomas Meijer, Robert C. Schuurink, Merijn R. Kant
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-54983-5

Plasma metabolomics in tuberculosis patients with and without concurrent type 2 diabetes at diagnosis and during antibiotic treatment
Cited by: 36
Author(s): Frank Vrieling, Bachti Alisjahbana, Edhyana Sahiratmadja, Reinout van Crevel, Amy C. Harms, Thomas Hankemeier, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-55632-7

Error associated with estimates of Minimum Infection Rate for Endemic West Nile Virus in areas of low mosquito trap density
Cited by: 9
Author(s): Sulagna Chakraborty, Rebecca L. Smith
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.46149

Identification of potential biomarkers of vaccine inflammation in mice
Cited by: 23
Author(s): Paul F. McKay, Deniz Cizmeci, Yoann Aldon, Jeroen Maertzdorf, January Weiner, Stefan H. E. Kaufmann, David Lewis, Robert A. van den Berg, Giuseppe Del Giudice, Robin J. Shattock
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0161168

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil)
Cited by: 20
Author(s): Juline M. Walter, Diogo A. Tschoeke, Pedro Milet Meirelles, Luciana de Oliveira, Luciana Leomil, Márcio Murilo Barboza Tenório, Rogério Valle, Paulo S. Salomon, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0220228

Being accurate about accuracy in verbal deception detection
Cited by: 18
Author(s): Bennett Kleinberg, Arnoud Arntz, Bruno Verschuere
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnut.2021.640100

Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome
Cited by: 7
Author(s): Jason W. Arnold, Hunter D. Whittington, Sue F. Dagher, Jeffery Roach, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0150568

Within-Host Models of High and Low Pathogenic Influenza Virus Infections: The Role of Macrophages
Cited by: 32
Author(s): Kasia A. Pawelek, Daniel Dor, Cristian Salmeron, Andreas Handel
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2020.00129

Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats
Cited by: 8
Author(s): Georgia Thomson‐Laing, Jonathan Puddick, Olivier Laroche, Samantha Fulton, Konstanze Steiner, Mark W. Heath, Susanna A. Wood
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-74753-y

Alcohol use in severely injured trauma patients
Cited by: 20
Author(s): Antti Riuttanen, Saara Jäntti, Ville M. Mattila
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0103417

Non-Additive Increases in Sediment Stability Are Generated by Macroinvertebrate Species Interactions in Laboratory Streams
Cited by: 26
Author(s): Lindsey K. Albertson, Bradley J. Cardinale, L. S. Sklar
Software Mentions: 4
Published: almost 12 years ago

10.1038/s42003-018-0195-3

Adult Antarctic krill proves resilient in a simulated high CO2 ocean
Cited by: 19
Author(s): Jessica A. Ericson, Nicole Hellessey, So Kawaguchi, Stephen Nicol, Peter D. Nichols, Nils Hoem, Patti Virtue
Software Mentions: 4
Published: over 7 years ago

10.1155/2020/3641231

Immune-Related Four-lncRNA Signature for Patients with Cervical Cancer
Cited by: 19
Author(s): Jianfeng Zheng, Benben Cao, Xia Zhang, Zhenbin Niu, Jinyi Tong
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0061736

Gene Expression Signatures of Energetic Acclimatisation in the Reef Building Coral Acropora millepora
Cited by: 30
Author(s): Line K. Bay, Aurélie Guérécheau, Nikos Andreakis, Karin E. Ulstrup, Mikhail V. Matz
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0229745

Changes in the gut microbiota of mice orally exposed to methylimidazolium ionic liquids
Cited by: 9
Author(s): Gregory R. Young, Tarek M. Abdelghany, Alistair C. Leitch, Michael Dunn, Peter G. Blain, Clare Lanyon, Matthew C. Wright
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms20030510

Molecular Insights into the Classification of Luminal Breast Cancers: The Genomic Heterogeneity of Progesterone-Negative Tumors
Cited by: 23
Author(s): Gianluca Lopez, Jole Costanza, M. Colleoni, Laura Fontana, Stefano Ferrero, Monica Miozzo, Nicola Fusco
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0230276

suddengains: An R package to identify sudden gains in longitudinal data
Cited by: 9
Author(s): Milan Wiedemann, Graham R. Thew, Richard Stott, Anke Ehlers
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-021-02524-0

Pulmonary immune cell trafficking promotes host defense against alcohol-associated Klebsiella pneumonia
Cited by: 10
Author(s): Derrick R. Samuelson, Min Gu, Judd E. Shellito, Patricia E. Molina, Christopher M. Taylor, Meng Luo, David A. Welsh
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0238420

Construction and analysis of a competing endogenous RNA network to reveal potential prognostic biomarkers for Oral Floor Squamous Cell Carcinoma
Cited by: 1
Author(s): Wenjing Zhang, Shuai Xu, Laner Shi, Zhangzhi Zhu, Xinying Xie
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0230566

Genetic compensation in a stable slc25a46 mutant zebrafish: A case for using F0 CRISPR mutagenesis to study phenotypes caused by inherited disease
Cited by: 35
Author(s): Elena Buglo, Evan Sarmiento, Nicole Belliard Martuscelli, David W. Sant, Matt C. Danzi, A. Jeanine Abrams, Julia E. Dallman, Stephan Züchner
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0249860

The successful reintroduction of African wild dogs (Lycaon pictus) to Gorongosa National Park, Mozambique
Cited by: 15
Author(s): Paola Bouley, António Paulo, Mercia Angela, Cole du Plessis, David G. Marneweck
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-77033-x

Moving targets in drug discovery
Cited by: 20
Author(s): Barbara Zdrazil, Lars Richter, Nathan Brown, Rajarshi Guha
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0244408

Genome-wide association study and pathway analysis identify NTRK2 as a novel candidate gene for litter size in sheep
Cited by: 13
Author(s): Seyed Mehdi Esmaeili-Fard, Mohsen Gholizadeh, Seyed Hasan Hafezian, Rostam Abdollahi-Arpanahi
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-01828-5

Hyperthermophilic methanogenic archaea act as high-pressure CH4 cell factories
Cited by: 26
Author(s): Lisa‐Maria Mauerhofer, Sara Zwirtmayr, Patricia Pappenreiter, Sébastien Bernacchi, Arne H. Seifert, Barbara Reischl, Tilman Schmider, Ruth-Sophie Taubner, Christian Paulik, Simon K.-M. R. Rittmann
Software Mentions: 4
Published: over 5 years ago

10.1007/s00395-021-00862-y

Fibroblast GATA-4 and GATA-6 promote myocardial adaptation to pressure overload by enhancing cardiac angiogenesis
Cited by: 29
Author(s): Gesine M. Dittrich, Natali Froese, Xue Wang, Hannah Kröger, Honghui Wang, Malgorzata Szaroszyk, Mona Malek Mohammadi, Julio Cordero, Merve Keles, Mortimer Korf‐Klingebiel, Kai C. Wollert, Robert Geffers, Manuel Mayr, Simon J. Conway, Gergana Dobreva, Johann Bauersachs, Joerg Heineke
Software Mentions: 4
Published: about 5 years ago

10.1099/mgen.0.000266

Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors
Cited by: 18
Author(s): Eva Heinz, Richard Brindle, Andrina Morgan-McCalla, Keisha Peters, Nicholas R. Thomson
Software Mentions: 4
Published: about 7 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0188568

Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits
Cited by: 22
Author(s): Jessica A. Conlan, Craig Humphrey, Andrea Severati, David S. Francis
Software Mentions: 4
Published: over 8 years ago

10.1038/s42003-020-0837-0

Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells
Cited by: 39
Author(s): Jackson A. Hoffman, Brian N. Papas, Kevin W. Trotter, Trevor Archer
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0164121

Abundance and Diversity of Crypto- and Necto-Benthic Coastal Fish Are Higher in Marine Forests than in Structurally Less Complex Macroalgal Assemblages
Cited by: 38
Author(s): Pierre Thiriet, Antonio Franco, Adrien Cheminée, Paolo Guidetti, Olivier Bianchimani, Solène Basthard‐Bogain, Jean-Michel Cottalorda, Hazel O. Arceo, Joan Moranta, Pierre Lejeune, Patrice Francour, Luisa Mangialajo
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0194032

Persistence of Coffea arabica and its relationship with the structure, species diversity and composition of a secondary forest in Brazil
Cited by: 8
Author(s): Diego Raymundo, Jamir Prado-Júnior, Norberto Emídio de Oliveira‐Neto, Lucas Dezidério Santana, Vagner Santiago do Vale, Tamiel Khan Baiocchi Jacobson, Paulo Eugênio Oliveira, Fabrício Alvim Carvalho
Software Mentions: 4
Published: over 8 years ago

10.3390/nu11092241

Generation of the Antioxidant Hydroxytyrosol from Tyrosol Present in Beer and Red Wine in a Randomized Clinical Trial
Cited by: 14
Author(s): Natalia Soldevila‐Domenech, Anna Boronat, Julián Mateus, Patrícia Diaz-Pellicer, Iris Matilla, Marta Pérez-Otero, Ana Aldea-Perona, Rafael de la Torre
Software Mentions: 3
Published: almost 7 years ago

10.1136/bmj.k452

Maternal thyroid function and child educational attainment: prospective cohort study
Cited by: 30
Author(s): Scott M. Nelson, Caroline Haig, Alex McConnachie, Naveed Sattar, Susan M. Ring, George Davey Smith, Debbie A. Lawlor, Robert Lindsay
Software Mentions: 3
Published: over 8 years ago

10.1136/bmj.k5222

Common conditions associated with hereditary haemochromatosis genetic variants: cohort study in UK Biobank
Cited by: 103
Author(s): Luke C. Pilling, Jone Tamosauskaite, Garan Jones, Andrew R. Wood, Lindsay Jones, Chai-Ling Kuo, George A. Kuchel, Luigi Ferrucci, David Melzer
Software Mentions: 3
Published: over 7 years ago

10.1136/bmjopen-2013-004521

Impact of lifetime opioid exposure on arterial stiffness and vascular age: cross-sectional and longitudinal studies in men and women
Cited by: 40
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 3
Published: about 12 years ago

10.1136/bmjopen-2018-022543

Do frailty measures improve prediction of mortality and morbidity following transcatheter aortic valve implantation? An analysis of the UK TAVI registry
Cited by: 39
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark deBelder, Mark Gunning, Jonathan N. Townend, Simon Redwood, Umesh Kadam, Iain Buchan, Mamas A. Mamas
Software Mentions: 3
Published: about 8 years ago

10.1136/bmjresp-2021-001029

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study
Cited by: 19
Author(s): Oliver Stirrup, Florencia A.T. Boshier, Cristina Venturini, José Afonso Guerra-Assunção, Adela Alcolea-Medina, Angela H. Beckett, Themoula Charalampous, Ana da Silva Filipe, Sharon Glaysher, Tabassum Khan, Raghavendran Kulasegaran‐Shylini, Beatrix Kele, Irene Monahan, Guy Mollett, Matthew Parker, Emanuela Pelosi, Paul Randell, Sunando Roy, Joshua F. Taylor, Sophie Joanne Weller, Eleri Wilson-Davies, Phillip Wade, Rachel Williams, Andrew Copas, Maria-Teresa Cutino-Moguel, Nick Freemantle, Andrew Hayward, Alison Holmes, Joseph Hughes, Tabitha Mahungu, Gaia Nebbia, David G Partridge, Cassie F. Pope, James R. Price, Samuel Robson, Kordo Saeed, Thushan I. de Silva, Luke B Snell, Emma C. Thomson, Adam A. Witney, Judith Breuer
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.bbr.2017.08.048

Automated dissection of permanent effects of hippocampal or prefrontal lesions on performance at spatial, working memory and circadian timing tasks of C57BL/6 mice in IntelliCage
Cited by: 37
Author(s): Vootele Võikar, Sven Krackow, Hans‐Peter Lipp, Anton Rau, Giovanni Colacicco, David P Wolfer
Software Mentions: 3
Published: over 7 years ago

10.1093/beheco/ary106

Navigating infection risk during oviposition and cannibalistic foraging in a holometabolous insect
Cited by: 12
Author(s): Jonathon A. Siva-Jothy, Katy M. Monteith, Pedro F. Vale
Software Mentions: 3
Published: almost 8 years ago

10.1093/beheco/araa085

Heat wave effects on the behavior and life-history traits of sedentary antlions
Cited by: 12
Author(s): Krzysztof Miler, Daniel Stec, Marcin Czarnołęski
Software Mentions: 3
Published: almost 6 years ago

10.1155/2018/2976014

The Effect of Gentle Handling on Depressive-Like Behavior in Adult Male Mice: Considerations for Human and Rodent Interactions in the Laboratory
Cited by: 25
Author(s): Caroline L.C. Neely, Christina Lane, Julio Rodríguez Torres, Jane M. Flinn
Software Mentions: 3
Published: over 8 years ago

10.3758/s13428-018-1163-z

RegularizedSCA: Regularized simultaneous component analysis of multiblock data in R
Cited by: 8
Author(s): Zhengguo Gu, Katrijn Van Deun
Software Mentions: 3
Published: over 7 years ago

10.3390/bs11060083

Men’s Psychotherapy Use, Male Role Norms, and Male-Typical Depression Symptoms: Examining 716 Men and Women Experiencing Psychological Distress
Cited by: 14
Author(s): Lukas Eggenberger, Callia Fordschmid, Claudio Ludwig, Seraina Weber, Jessica Grub, Nikola Komlenac, Andreas Walther
Software Mentions: 3
Published: about 5 years ago

10.1080/21655979.2021.1911557

Identification and validation of the prognostic value of cyclic GMP-AMP synthase-stimulator of interferon (cGAS-STING) related genes in gastric cancer
Cited by: 10
Author(s): Kui-Sheng Yang, Changqing Xu, Jian Lv
Software Mentions: 3
Published: over 5 years ago

10.1007/s10522-016-9638-8

The functional consequences of age-related changes in microRNA expression in skeletal muscle
Cited by: 49
Author(s): Ana Soriano‐Arroquia, Louise House, Luke Tregilgas, Elizabeth G. Canty‐Laird, Katarzyna Goljanek‐Whysall
Software Mentions: 3
Published: over 10 years ago

10.1093/bioinformatics/btw127

SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data
Cited by: 3
Author(s): Christian Arnold, Pooja Bhat, Judith B. Zaugg
Software Mentions: 3
Published: over 10 years ago

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