cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fgene.2014.00293

A bioinformatics workflow for detecting signatures of selection in genomic data
Cited by: 49
Author(s): Murray Cadzow, James Boocock, Hoang Nguyen, Phillip Wilcox, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: almost 12 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01006

Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence
Cited by: 7
Author(s): Beatriz Beamud, María Alma Bracho, Fernando González‐Candelas
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.64283

Reprogramming of translation in yeast cells impaired for ribosome recycling favors short, efficiently translated mRNAs
Cited by: 19
Author(s): Swati Gaikwad, Fardin Ghobakhlou, David J. Young, Jyothsna Visweswaraiah, Hongen Zhang, Alan G. Hinnebusch
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-44547-y

Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure
Cited by: 57
Author(s): Noelle Younge, Christopher B. Newgard, C. Michael Cotten, Ronald N. Goldberg, Michael J. Muehlbauer, James R. Bain, Robert Stevens, Thomas M. O’Connell, John F. Rawls, Patrick C. Seed, Patricia L. Ashley
Software Mentions: 4
Published: about 7 years ago

10.1111/pbi.13260

The pomegranate (Punica granatumL.) draft genome dissects genetic divergence between soft‐ and hard‐seeded cultivars
Cited by: 59
Author(s): Xiang Luo, Haoxian Li, Zhuona Wu, Wen Yao, Peng Zhao, Da Cao, Haiyan Yu, Kaidi Li, Krishna Poudel, Dan Zhao, Fuhong Zhang, Xiaocong Xia, Lina Chen, Qi Wang, Dan Jing, Shangyin Cao
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.684281

A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III–IV Lung Adenocarcinoma
Cited by: 3
Author(s): Hao Zhao, Xuening Zhang, Liting Guo, Songhe Shi, Ciyong Lu
Software Mentions: 4
Published: almost 5 years ago

10.1042/BSR20203020

Network-based approach to identify prognosis-related genes in tamoxifen-treated patients with estrogen receptor-positive breast cancer
Cited by: 4
Author(s): Yanyan Wang, Xiaonan Gong, Yujie Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1038/bjc.2016.363

Aldo-keto reductases are biomarkers of NRF2 activity and are co-ordinately overexpressed in non-small cell lung cancer
Cited by: 31
Author(s): Annette MacLeod, Lourdes Acosta-Jimenez, Philip J. Coates, Michael McMahon, Frank Carey, Tadashi Honda, Colin J. Henderson, C. Roland Wolf
Software Mentions: 4
Published: over 9 years ago

10.1186/s13054-020-2788-8

Dynamic LTR retrotransposon transcriptome landscape in septic shock patients
Cited by: 5
Author(s): Marine Mommert, Olivier Tabone, Audrey Guichard, Guy Oriol, Elisabeth Cerrato, Mélanie Denizot, Valérie Cheynet, Alexandre Pachot, Alain Lepape, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.66186

Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
Cited by: 19
Author(s): Derek S. Lundberg, Pratchaya Pramoj Na Ayutthaya, Annett Strauß, Gautam Shirsekar, Wen‐Sui Lo, Thomas Lahaye, Detlef Weigel
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2020.557188

Bioinformatics Identification of the Expression and Clinical Significance of E2F Family in Endometrial Cancer
Cited by: 8
Author(s): YunZheng Zhang, Zihao Wang, Jian Ma, Jianing Huo, Yibing Li, YuShan Wang, Hao Chen, LuHe Shan, Xiaoxin Ma
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0222486

Are dialects socially learned in marmoset monkeys? Evidence from translocation experiments
Cited by: 20
Author(s): Yvonne Zürcher, Erik P. Willems, Judith M. Burkart
Software Mentions: 4
Published: over 6 years ago

10.1002/pld3.241

Control of translation during the unfolded protein response in maize seedlings: Life without PERKs
Cited by: 9
Author(s): Pulkit Kanodia, Paramasivan Vijayapalani, Renu Srivastava, Ran Bi, Peng Liu, W. Allen Miller, Stephen H. Howell
Software Mentions: 4
Published: almost 6 years ago

10.3390/insects11090645

Diet Breadth Affects Bacterial Identity but Not Diversity in the Pollen Provisions of Closely Related Polylectic and Oligolectic Bees
Cited by: 10
Author(s): Jason A. Rothman, Diana Cox-Foster, Corey J. Andrikopoulos, Quinn S. McFrederick
Software Mentions: 4
Published: almost 6 years ago

10.1155/2018/1264697

Identification of 170 New Long Noncoding RNAs in Schistosoma mansoni
Cited by: 17
Author(s): Victor Fernandes de Oliveira, Lauro A. G. Moares, Ester Alves Mota, Liana K. Jannotti-Passos, Paulo Marcos Zech Coelho, Ana Carolina Alves de Mattos, Flávia Fernanda Búbula Couto, Brian E. Caffrey, Annalisa Marsico, Renata Guerra‐Sá
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0251121

Melanocytes determine angiogenesis gene expression across human tissues
Cited by: 3
Author(s): Shirly Freilikhman, Marianna Halasi, Alal Eran, Irit Adini
Software Mentions: 4
Published: about 5 years ago

10.1186/s13054-017-1800-4

Early troponin I in critical illness and its association with hospital mortality: a cohort study
Cited by: 22
Author(s): Annemarie B Docherty, Malcolm Sim, João Diogo Oliveira, Michael Adlam, Marlies Ostermann, Timothy Walsh, John Kinsella, Nazir Lone
Software Mentions: 4
Published: almost 9 years ago

10.3390/insects11070441

Genetic Diversity in Invasive Populations of Argentine Stem Weevil Associated with Adaptation to Biocontrol
Cited by: 11
Author(s): Thomas W. R. Harrop, Marissa F. Le Lec, Ruy Jáuregui, Shannon E. Taylor, Sarah N Inwood, Tracey Van Stijn, Hannah M. Henry, John Skelly, Siva Ganesh, Rachael Ashby, Jeanne M. E. Jacobs, S. L. Goldson, Peter K. Dearden
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.mcpro.2021.100065

Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits
Cited by: 5
Author(s): F. Schober, Ilian Atanassov, David Moore, Javier Calvo‐Garrido, Marco F. Moedas, Anna Wedell, Christoph Freyer, Anna Wredenberg
Software Mentions: 4
Published: over 5 years ago

10.1186/s12974-020-01797-2

Glioblastoma hijacks microglial gene expression to support tumor growth
Cited by: 63
Author(s): Sybren L. N. Maas, Erik R. Abels, Lieke L van de Haar, Xuan Zhang, Liza M. Morsett, Srinjoy Sil, Joana Guedes, Pritha Sen, Shilpa Prabhakar, Suzanne E. Hickman, Charles P. Lai, David T. Ting, Xandra O. Breakefield, Marike L. D. Broekman, Joseph El Khoury
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers12020381

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models
Cited by: 16
Author(s): J. Tyson McDonald, R. Stainforth, Jack Miller, Thomas J. Cahill, Willian A. da Silveira, Komal S. Rathi, Gary Hardiman, Deanne Taylor, Sylvain V. Costes, Vinita Chauhan, Robert Meller, Afshin Beheshti
Software Mentions: 4
Published: over 6 years ago

10.3390/cancers13051079

EphB6 Regulates TFEB-Lysosomal Pathway and Survival of Disseminated Indolent Breast Cancer Cells
Cited by: 10
Author(s): Manuela Zangrossi, Patrizia Romani, Probir Chakravarty, Colin D.H. Ratcliffe, Steven Hooper, Martina Dori, Mattia Forcato, Silvio Bicciato, Sirio Dupont, Erik Sahai, Marco Montagner
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-44230-2

Genetic structure and forensic characteristics of Tibeto-Burman-speaking Ü-Tsang and Kham Tibetan Highlanders revealed by 27 Y-chromosomal STRs
Cited by: 16
Author(s): Guanglin He, Zheng Wang, Yongdong Su, Xing Zou, Mengge Wang, Xu Chen, Bo Gao, Jing Liu, Shouyu Wang, Yiping Hou
Software Mentions: 4
Published: about 7 years ago

10.1093/molbev/msaa324

Repeated Evolution of Inactive Pseudonucleases in a Fungal Branch of the Dis3/RNase II Family of Nucleases
Cited by: 8
Author(s): Elizabeth R. Ballou, Atlanta G. Cook, Eric Wallace
Software Mentions: 4
Published: over 5 years ago

10.1074/mcp.M115.049205

Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula
Cited by: 37
Author(s): David Lyon, María Ángeles Castillejo, Vlora Mehmeti-Tershani, Christiana Staudinger, Christoph Kleemaier, Stefanie Wienkoop
Software Mentions: 4
Published: about 10 years ago

10.1111/irv.12574

Primary care influenza-like illness surveillance in Ho Chi Minh City, Vietnam 2013-2015
Cited by: 8
Author(s): Stacy Todd, Nguyễn Thị Cẩm Hường, Nguyen Thi Le Thanh, Nguyen Ha Thao Vy, Nguyễn Thành Hưng, Tran Thi Nhu Thao, Huynh Thi Phuong, H. Rogier van Doorn, Vu Thi Ty Hang, Nguyễn Văn Vĩnh Châu, Jonathan M. Read, David G. Lalloo, Maciej F. Boni
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.605015

RNA-Seq Profiling of Circular RNAs During Development of Hindgut in Rat Embryos With Ethylenethiourea-Induced Anorectal Malformations
Cited by: 5
Author(s): Si Ying Li, Chen Yi Wang, Yun Xiao, Xiao Tang, Zheng Wei Yuan, Yu Bai
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.616149

Prognostic Impact of Radiological Consolidation Tumor Ratio in Clinical Stage IA Pulmonary Ground Glass Opacities
Cited by: 21
Author(s): Junjie Xi, Jiacheng Yin, Jiaqi Liang, Cheng Zhan, Wei Jiang, Lin Zhang, Songtao Xu, Qun Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.14814/phy2.13133

Hypothalamic transcriptomic alterations in male and female California mice (Peromyscus californicus) developmentally exposed to bisphenol A or ethinyl estradiol
Cited by: 25
Author(s): Sarah A. Johnson, William G. Spollen, Lindsey K. Manshack, Nathan J. Bivens, Scott A. Givan, Cheryl S. Rosenfeld
Software Mentions: 4
Published: over 9 years ago

10.1155/2017/8038460

Utilisation of Intermediate Care Units: A Systematic Review
Cited by: 40
Author(s): Joost D J Plate, Luke P. H. Leenen, Marijn Houwert, Falco Hietbrink
Software Mentions: 4
Published: over 9 years ago

10.1074/mcp.RA119.001392

Cathepsin L Regulates Metabolic Networks Controlling Rapid Cell Growth and Proliferation
Cited by: 7
Author(s): Tommy Weiss-Sadan, Gal Itzhak, Farnusch Kaschani, Zhanru Yu, Mohamed Mahameed, Adi Anaki, Yael Ben-Nun, Emmanuelle Merquiol, Boaz Tirosh, Benedikt M. Kessler, Markus Kaiser, Galia Blum
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12284-020-00404-5

Phenotyping Root Systems in a Set of Japonica Rice Accessions: Can Structural Traits Predict the Response to Drought?
Cited by: 15
Author(s): P. H. R. Guimarães, Isabela Pereira de Lima, Adriano Pereira de Castro, Anna Cristina Lanna, P. G. S. Melo, Marcel De Raı̈ssac
Software Mentions: 4
Published: almost 6 years ago

10.2135/cropsci2018.01.0060

Genetic Variation and Trait Correlations in an East African Cassava Breeding Population for Genomic Selection
Cited by: 14
Author(s): Alfred Ozimati, R. Kawuki, Williams Esuma, Siraj Ismail Kayondo, Anthony Pariyo, Marnin D. Wolfe, Jean‐Luc Jannink
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2017.02379

Responses of Microbial Community Composition to Temperature Gradient and Carbon Steel Corrosion in Production Water of Petroleum Reservoir
Cited by: 35
Author(s): Xiaoxiao Li, Tao Yang, Serge Maurice Mbadinga, Jinfeng Liu, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2020.01658

Circulating Tumor Cells Expressing the Prostate Specific Membrane Antigen (PSMA) Indicate Worse Outcome in Primary, Non-Metastatic Triple-Negative Breast Cancer
Cited by: 14
Author(s): Sabine Kasimir‐Bauer, Corinna Keup, Oliver Hoffmann, Siegfried Hauch, Rainer Kimmig, Ann‐Kathrin Bittner
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.716921

HNRNPA2B1, as a m6A Reader, Promotes Tumorigenesis and Metastasis of Oral Squamous Cell Carcinoma
Cited by: 22
Author(s): Feiya Zhu, Tianru Yang, Meiling Yao, Ting Shen, Changyun Fang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41438-019-0214-7

Minor alleles are associated with white rust (Albugo occidentalis) susceptibility in spinach (Spinacia oleracea)
Cited by: 4
Author(s): Henry O. Awika, Thiago G. Marconi, Renesh Bedre, Kranthi K. Mandadi, Carlos A. Avila
Software Mentions: 4
Published: over 6 years ago

10.3390/plants10071311

Brassinolide Enhances the Level of Brassinosteroids, Protein, Pigments, and Monosaccharides in Wolffia arrhiza Treated with Brassinazole
Cited by: 8
Author(s): Magdalena Chmur, Andrzej Bajguz
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250665

Application of machine learning and genetic optimization algorithms for modeling and optimizing soybean yield using its component traits
Cited by: 28
Author(s): Mohsen Yoosefzadeh-Najafabadi, Dan Tulpan, Milad Eskandari
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.65130

Collateral sensitivity associated with antibiotic resistance plasmids
Cited by: 14
Author(s): Cristina Herencias, Jerónimo Rodríguez-Beltrán, Ricardo León‐Sampedro, Aída Alonso-del Valle, Jana Palkovičová, Rafael Cantón, Álvaro San Millán
Software Mentions: 4
Published: over 5 years ago

10.1186/s12977-020-00544-y

Comparative analysis of human microglial models for studies of HIV replication and pathogenesis
Cited by: 34
Author(s): Ammara Mohammad, J. Hammonds, Mario Pujato, Christopher N. Mayhew, Krishna M. Roskin, Paul Spearman
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.620200

Methylation Regulation of TLR3 on Immune Parameters in Lung Adenocarcinoma
Cited by: 3
Author(s): Ang Li, Hongjiao Wu, Quan Tian, Yi Zhang, Zhi Zhang, Xuemei Zhang
Software Mentions: 4
Published: about 5 years ago

10.7759/cureus.12518

Validity of TIMI Score for Predicting 14-Day Mortality of Non-ST Elevation Myocardial Infarction Patients
Cited by: 0
Author(s): Dileep Kumar, Tahir Saghir, Maham Zahid, Arti Ashok, Mukesh Kumar, Asad Hussain Shah, Izza Shahid, Sajjad Ali, Ayema Haque, Musa Karim
Software Mentions: 4
Published: over 5 years ago

10.2196/jmir.6342

Methods for Evaluating Respondent Attrition in Web-Based Surveys
Cited by: 61
Author(s): Camille J. Hochheimer, Roy Sabo, Alex H. Krist, Teresa Day, John Cyrus, Steven H. Woolf
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.28306

Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq
Cited by: 94
Author(s): Jason G Dumelie, Samie R. Jaffrey
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: over 6 years ago

10.14814/phy2.14012

Fecal transplant modifies urine chemistry risk factors for urinary stone disease
Cited by: 18
Author(s): Joshua M. Stern, Marcia Urban‐Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin P. Davies, Ilir Agalliu, John R. Asplin, Robert D. Burk, Sylvia O. Suadicani
Software Mentions: 4
Published: over 7 years ago

10.3390/microorganisms8010030

Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines
Cited by: 20
Author(s): Susanne Jacksch, Dominik Kaiser, Severin Weis, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 4
Published: over 6 years ago

10.1186/s12974-021-02264-2

Systemic inflammation alters the neuroinflammatory response: a prospective clinical trial in traumatic brain injury
Cited by: 11
Author(s): Philipp Lassarén, Caroline Lindblad, Arvid Frostell, Keri L. H. Carpenter, Mathew R. Guilfoyle, Peter J. Hutchinson, Adel Helmy, Eric Peter Thelin
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2020.600248

Caspase 4 Overexpression as a Prognostic Marker in Clear Cell Renal Cell Carcinoma: A Study Based on the Cancer Genome Atlas Data Mining
Cited by: 12
Author(s): Lingfeng Meng, Zijian Tian, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Wei Zhang, Yaoguang Zhang, Qianqian Wang, Yuhui He
Software Mentions: 4
Published: over 5 years ago

10.3390/plants9070829

Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population
Cited by: 8
Author(s): Tally I C Wright, Angela C. Burnett, Howard Griffiths, Maxime Kadner, James S. Powell, Hugo R. Oliveira, Fiona Leigh
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2019.00555

Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media
Cited by: 14
Author(s): Silvio D. Brugger, Julia G. Kraemer, Weihong Qi, Lindsey Bomar, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-43483-1

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection
Cited by: 6
Author(s): Megan A. Schilling, Sahar Memari, Meredith Cavanaugh, Robab Katani, Melissa S. Deist, Jessica Radzio‐Basu, Susan J. Lamont, Joram Buza, Vivek Kapur
Software Mentions: 4
Published: about 7 years ago

10.1186/s13068-015-0248-5

Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase production in Neurospora crassa
Cited by: 52
Author(s): Fan Feng, Guoli Ma, Jingen Li, Qian Liu, J. Philipp Benz, Chaoguang Tian, Yanhe Ma
Software Mentions: 4
Published: about 11 years ago

10.1038/s41438-021-00566-3

Sex-biased genes and metabolites explain morphologically sexual dimorphism and reproductive costs in Salix paraplesia catkins
Cited by: 8
Author(s): Zeyu Cai, Congcong Yang, Jianchun Liao, Haifeng Song, Sheng Zhang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.616875

Curing of Cocoa Beans: Fine-Scale Monitoring of the Starter Cultures Applied and Metabolomics of the Fermentation and Drying Steps
Cited by: 19
Author(s): Cristian Díaz-Muñoz, Dario Van de Voorde, Andrea Comasio, Marko Verce, Carlos Eduardo Hernandez, Stefan Weckx, Luc De Vuyst
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-43158-x

An HRM Assay to Differentiate Sheeppox Virus Vaccine Strains from Sheeppox Virus Field Isolates and other Capripoxvirus Species
Cited by: 19
Author(s): Tesfaye Rufael, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Reingard Grabherr, Angelika Loitsch, Eeva Tuppurainen, Nick Nwankpa, K Tounkara, Hafsa Madani, Amel Omani, Mariame Diop, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 4
Published: about 7 years ago

10.3389/fgene.2020.556267

Genome Complexity Reduction High-Throughput Genome Sequencing of Green Iguana (Iguana iguana) Reveal a Paradigm Shift in Understanding Sex-Chromosomal Linkages on Homomorphic X and Y Sex Chromosomes
Cited by: 13
Author(s): Tassika Koomgun, Nararat Laopichienpong, Worapong Singchat, Thitipong Panthum, Rattanin Phatcharakullawarawat, Ekaphan Kraichak, Siwapech Sillapaprayoon, Syed Farhan Ahmad, Narongrit Muangmai, Surin Peyachoknagul, Prateep Duengkae, Tariq Ezaz, Kornsorn Srikulnath
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.594569

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks
Cited by: 6
Author(s): Isaiah Catalino M. Pabuayon, Ai Kitazumi, Glenn B. Gregorio, Rakesh Kumar Singh, Benildo G. de los Reyes
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.117.300550

Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)
Cited by: 8
Author(s): Rachel F. Begheyn, Steven Yates, Timothy Sykes, Bruno Studer
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-019-42827-1

Contrasting latitudinal patterns in phylogenetic diversity between woody and herbaceous communities
Cited by: 23
Author(s): Jhonny Capichoni Massante, Lars Götzenberger, Krista Takkis, Tiit Hallikma, Ants Kaasik, Lauri Laanisto, Michael J. Hutchings, Pille Gerhold
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.118.200127

Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability
Cited by: 23
Author(s): Emma Sofie Timm Aller, Lea Møller Jagd, Daniel J. Kliebenstein, Meike Burow
Software Mentions: 4
Published: about 8 years ago

10.1534/g3.117.300245

Genome-Wide Screen forSaccharomyces cerevisiaeGenes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host
Cited by: 7
Author(s): Sujal Phadke, Calum J. Maclean, Serena Zhao, Emmi A. Mueller, Lucas A. Michelotti, Kaitlyn L. Norman, Anuj Kumar, Timothy Y. James
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00715

Response of Lactobacillus plantarum WCFS1 to the Gram-Negative Pathogen-Associated Quorum Sensing Molecule N-3-Oxododecanoyl Homoserine Lactone
Cited by: 16
Author(s): Joseph R. Spangler, Scott N. Dean, Dagmar H. Leary, Scott A. Walper
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.117.042531

Genome-Wide Exome Analysis of Cmv5-Disparate Mouse Strains that Differ in Host Resistance to Murine Cytomegalovirus Infection
Cited by: 3
Author(s): Alyssa Gillespie, Heather Lee, Catherine Robertson, Maya Cabot, Michael G. Brown
Software Mentions: 4
Published: about 9 years ago

10.1098/rstb.2015.0040

Loss of neurogenesis inHydraleads to compensatory regulation of neurogenic and neurotransmission genes in epithelial cells
Cited by: 42
Author(s): Yvan Wenger, Wanda Christa Buzgariu, Brigitte Galliot
Software Mentions: 4
Published: over 10 years ago

10.3389/fonc.2018.00095

CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
Cited by: 35
Author(s): William S. Chen, Ranjit S. Bindra, Allen Mo, Thomas J. Hayman, Zain Husain, Joseph N. Contessa, Stephen G. Gaffney, Jeffrey P. Townsend, James B. Yu
Software Mentions: 4
Published: about 8 years ago

10.1534/g3.113.009514

Genomics of CpG Methylation in Developing and Developed Zebrafish
Cited by: 40
Author(s): David McGaughey, Hatice Özel Abaan, Ryan M. Miller, Peter Kropp, Lawrence C. Brody
Software Mentions: 4
Published: about 12 years ago

10.1038/s41598-019-42692-y

Risks of hydroclimatic regime shifts across the western United States
Cited by: 2
Author(s): Subhrendu Gangopadhyay, Gregory J. McCabe, Gregory T. Pederson, Jessica Martin, Jeremy S. Littell
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.113.009431

gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
Cited by: 99
Author(s): Omar Wagih, Leopold Parts
Software Mentions: 4
Published: over 12 years ago

10.18632/oncotarget.12818

Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21
Cited by: 32
Author(s): Yosr Hamdi, Penny Soucy, Véronique Adoue, Kyriaki Michailidou, Sander Canisius, Audrey Lemaçon, Arnaud Droit, Irene L. Andrulis, Hoda Anton‐Culver, Volker Arndt, Caroline Baynes, Carl Blomqvist, Natalia Bogdanova, Stig E. Bojesen, Manjeet K. Bolla, Bernardo Bonanni, Anne‐Lise Børresen‐Dale, Judith S. Brand, Hiltrud Brauch, Hermann Brenner, Annegien Broeks, Barbara Burwinkel, Jenny Chang–Claude, Fergus J. Couch, Angela Cox, Simon S. Cross, Kamila Czene, Hatef Darabi, Joe Dennis, Peter Devilee, Thilo Dörk, Isabel dos‐Santos‐Silva, Mikael Eriksson, Peter A. Fasching, Jonine D. Figueroa, Henrik Flyger, Montserrat García‐Closas, Graham G. Giles, Mark S. Goldberg, Anna González‐Neira, Grethe Irene Grenaker-Alnæs, Pascal Guénel, Lothar Haeberle, Christopher A. Haiman, Ute Hamann, Emily Hallberg, Maartje J. Hooning, John L. Hopper, Anna Jakubowska, Michael E. Jones, Maria Kabisch, Vesa Kataja, Diether Lambrechts, Loı̈c Le Marchand, Annika Lindblom, Jan Lubiński, Arto Mannermaa, Mel Maranian, Sara Margolin, Frederik Marmé, Roger L. Milne, Susan L. Neuhausen, Heli Nevanlinna, Patrick Neven, Curtis Olswold, Julian Peto, Dijana Plaseska‐Karanfilska, Katri Pylkäs, Paolo Radice, Anja Rudolph, Elinor J. Sawyer, Marjanka K. Schmidt, Xiao‐Ou Shu, Melissa C. Southey, Anthony Swerdlow, Rob A.E.M. Tollenaar, Ian Tomlinson, Diana Torres, Thérèse Truong, Celine M. Vachon, Ans M.W. van den Ouweland, Qin Wang, Robert Winqvist, _ kConFab, Aocs Investigators, Wei Zheng, Javier Benı́tez, Georgia Chenevix-Trench, Alison M. Dunning, Paul D.P. Pharoah, Vessela N. Kristensen, Per Hall, Douglas F. Easton, Tomi Pastinen, Silje Nord, Jacques Simard
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2021.633899

High BLM Expression Predicts Poor Clinical Outcome and Contributes to Malignant Progression in Human Cholangiocarcinoma
Cited by: 7
Author(s): Xiaoqiang Du, Chen Zhang, Chuanzheng Yin, Wenjie Wang, Xueke Yan, Dawei Xie, Xichuan Zheng, Qi Zheng, Min Li, Zifang Song
Software Mentions: 4
Published: over 5 years ago

10.2217/fvl-2020-0256

Epidemiologic features and clinical course of COVID-19: a retrospective analysis of 19 patients in Germany
Cited by: 1
Author(s): Sara Elgamasy, Eman El-Sayed Sakr, Mohamed Gomaa Kamel, Sherief Ghozy, Ghadeer Gamal Elsayed, Mostafa Mahmoud Fahmy, Ahmed Ghazy, Mohamed M. Ibrahim, Mostafa Ebraheem Morra
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: about 6 years ago

10.1186/s12983-021-00388-y

Density-dependence of nestling immune function and physiological condition in semi-precocial colonial bird: a cross-fostering experiment
Cited by: 5
Author(s): Maciej Kamiński, Tomasz Janiszewski, Piotr Indykiewicz, Jacek J. Nowakowski, Jarosław Kowalski, Beata Dulisz, Piotr Minias
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/6950530

Characteristics of Slovenian Adults in Community-Based Whole-Food Plant-Based Lifestyle Program
Cited by: 5
Author(s): Boštjan Jakše, Barbara Jakše, Stanislav Pinter, Jernej Pajek, Nataša Fidler Mis
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12983-021-00416-x

Lack of impact of radiation on blood physiology biomarkers of Chernobyl tree frogs
Cited by: 5
Author(s): Pablo Burraco, Jean‐Marc Bonzom, Clément Car, K. Beaugelin-Seiller, Sergey Gashchak, Germán Orizaola
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12983-019-0327-8

Small-scale phenotypic differentiation along complex stream gradients in a non-native amphipod
Cited by: 13
Author(s): Jonas Jourdan, Kathrin Piro, Alexander Weigand, Martin Plath
Software Mentions: 4
Published: almost 7 years ago

10.3390/cancers12092466

Expression Profiling of Extracellular Matrix Genes Reveals Global and Entity-Specific Characteristics in Adenoid Cystic, Mucoepidermoid and Salivary Duct Carcinomas
Cited by: 16
Author(s): Christoph Arolt, Moritz Meyer, Franziska Hoffmann, Svenja Wagener‐Ryczek, David Schwarz, Lisa Nachtsheim, Dirk Beutner, Margarete Odenthal, Orlando Guntinas‐Lichius, Reinhard Buettner, Ferdinand von Eggeling, Jens Peter Klußmann, Alexander Quaas
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-42733-6

Right hemisphere occipital rTMS impairs working memory in visualizers but not in verbalizers
Cited by: 16
Author(s): Sven Hilbert, Michaela McAssey, Markus Bühner, Patrick Schwaferts, Monika Gruber, Stephan Goerigk, Paul C.J. Taylor
Software Mentions: 4
Published: about 7 years ago

10.1002/pld3.28

Divergent leaf shapes among Passiflora species arise from a shared juvenile morphology
Cited by: 24
Author(s): Daniel H. Chitwood, Wagner Campos Otoni
Software Mentions: 4
Published: over 8 years ago

10.1186/s12984-021-00820-8

Brain–computer interface robotics for hand rehabilitation after stroke: a systematic review
Cited by: 76
Author(s): Paul Dominick E. Baniqued, Emily C. Stanyer, Muhammad Awais, Ali Alazmani, Andrew Jackson, Mark Mon-Williams, Faisal Mushtaq, R. Glynn Holt
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-42560-9

De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats
Cited by: 22
Author(s): Diana D. Moreno-Santillán, Carlos Machaín-Williams, Georgina Hernández-Montes, Jorge Ortega
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.9326

Microbial community analysis in the gills of abalones suggested possible dominance of epsilonproteobacterium in Haliotis gigantea
Cited by: 2
Author(s): Yukino Mizutani, Tetsushi Mori, Taeko Miyazaki, Satoshi Fukuzaki, Reiji Tanaka
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-42570-7

Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle
Cited by: 22
Author(s): Shino Tanaka, Mehmet Dayı, Y. Maeda, Isheng Jason Tsai, Ryusei Tanaka, Mark W. Bligh, Yuko Takeuchi-Kaneko, Kenji Fukuda, Natsumi Kanzaki, Taisei Kikuchi
Software Mentions: 4
Published: about 7 years ago

10.3390/plants10061246

Genetic Variability of Mineral Content in Different Grain Structures of Bean Cultivars from Mesoamerican and Andean Gene Pools
Cited by: 2
Author(s): Douglas Mariani Zeffa, Alexandre Simões Nogueira, Juliana Sawada Buratto, Raquel Barboza Reis de Oliveira, José dos Santos Neto, Vânia Moda-Cirino
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2017.00244

Drivers of Live Cattle Price in the Livestock Trading System of Central Cameroon
Cited by: 3
Author(s): Paolo Carlo Motta, Ian Handel, Gustaf Rydevik, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Barend M. deC. Bronsvoort, Thibaud Porphyre
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2020.00750

Incidence, Prognostic Factors and Survival Outcome in Patients With Primary Hepatic Lymphoma
Cited by: 8
Author(s): Shilong Zhang, Chen Chen, Qianwen Rao, Zhe Guo, Xin Wang, Zhiming Wang, Li‐Shun Wang
Software Mentions: 4
Published: about 6 years ago

10.1093/cdn/nzaa165

Pomegranate Metabolites Impact Tryptophan Metabolism in Humans and Mice
Cited by: 10
Author(s): Jieping Yang, Yuanqiang Guo, Ru-Po Lee, Susanne M. Henning, Jing Wang, Yajing Pan, Tianyu Qing, Mark Hsu, Alex Nguyen, Prabha Siddarth, Rashi Ojha, Gary W. Small, David Heber, Zhaoping Li
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.673192

Immune and Metabolic Dysregulated Coding and Non-coding RNAs Reveal Survival Association in Uterine Corpus Endometrial Carcinoma
Cited by: 1
Author(s): Da Liu, Min Qiu
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2021.714143

Providing Humans With Practical, Best Practice Handling Guidelines During Human-Cat Interactions Increases Cats' Affiliative Behaviour and Reduces Aggression and Signs of Conflict
Cited by: 9
Author(s): Camilla Haywood, Lucia Ripari, Jo Puzzo, Rachel Foreman-Worsley, Lauren Finka
Software Mentions: 4
Published: almost 5 years ago

10.3390/microorganisms9081673

Variation in Sodic Soil Bacterial Communities Associated with Different Alkali Vegetation Types
Cited by: 2
Author(s): Andrea K. Borsodi, Márton Mucsi, Gergely Krett, Attila Szabó, Tamás Felföldi, Tibor Szili‐Kovács
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2021.688882

MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0223524

Trends in NBA and Euroleague basketball: Analysis and comparison of statistical data from 2000 to 2017
Cited by: 24
Author(s): Radivoj Mandić, Saša Jakovljević, Frane Erčulj, Erik Štrumbelj
Software Mentions: 4
Published: over 6 years ago

10.1002/pld3.296

Developmental plasticity of Brachypodium distachyon in response to P deficiency: Modulation by inoculation with phosphate‐solubilizing bacteria
Cited by: 2
Author(s): Caroline Baudson, Benjamin Delory, Stijn Spaepen, Patrick du Jardin, Pierre Delaplace
Software Mentions: 4
Published: over 5 years ago

10.1038/s41420-021-00473-5

The role of ferroptosis in breast cancer patients: a comprehensive analysis
Cited by: 54
Author(s): Zeng-Hong Wu, Yun Tang, Hong Yu, Huadong Li
Software Mentions: 4
Published: about 5 years ago

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Papers Mentioning ggplot2 11,441