cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/cancers13163954

Prognostication of Primary Tumor Location in Early-Stage Nodal Diffuse Large B-Cell Lymphoma: An Analysis of the SEER Database
Cited by: 2
Author(s): Yi Xia, Silan Huang, Yu Wang, Dexin Lei, Yanlou Wang, Hang Yang, Yan Gao, Panpan Li
Software Mentions: 4
Published: about 5 years ago

10.1186/s12986-017-0170-x

High-cholesterol diet does not alter gut microbiota composition in mice
Cited by: 31
Author(s): Lidiya G. Dimova, Nikola Zlatkov, Henkjan J. Verkade, Bernt Eric Uhlin, Uwe J. F. Tietge
Software Mentions: 4
Published: over 9 years ago

10.3390/cancers12071913

The LIM Protein Ajuba Augments Tumor Metastasis in Colon Cancer
Cited by: 10
Author(s): Noëlle Dommann, Daniel Sánchez-Taltavull, Linda Eggs, Fabienne Esther Birrer, Tess M. Brodie, Lilian Salm, Felix Alexander Baier, Michaela Medová, Magali Humbert, Mario P. Tschan, Guido Beldi, Daniel Candinas, Deborah Stroka
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers13102300

Plasma Protein Biomarkers Associated with Higher Ovarian Cancer Risk in BRCA1/2 Carriers
Cited by: 5
Author(s): Hee-Sung Ahn, Jung Ho, Jeesuk Yu, Jeonghun Yeom, Sanha Lee, Soo-Young Hur, Yoon Young Jung, Kyunggon Kim, Youn Jin Choi
Software Mentions: 4
Published: over 5 years ago

10.3390/nu12030790

Human Milk Oligosaccharide Profile Variation Throughout Postpartum in Healthy Women in a Brazilian Cohort
Cited by: 39
Author(s): Ana Paula de Lima Ferreira, Ronaldo Alves, Amanda Faria de Figueiredo, Nadya Helena Alves-Santos, Nathalia Freitas-Costa, Mônica Araújo Batalha, Chloe Yonemitsu, Nadia Manivong, Annalee Fürst, Lars Bode, Gilberto Kac
Software Mentions: 4
Published: over 6 years ago

10.1186/s12866-018-1298-1

RNA interference-based antiviral immune response against the salivary gland hypertrophy virus in Glossina pallidipes
Cited by: 9
Author(s): Irene K. Meki, Henry M. Kariithi, Andrew G. Parker, Marc J. B. Vreysen, V.I.D. Ros, Just M. Vlak, Monique M. van Oers, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.3390/cancers13081979

Risk of Pharmacological or Hospital Treatment for Depression in Patients with Colorectal Cancer–Associations with Pre-Cancer Lifestyle, Comorbidity and Clinical Factors
Cited by: 2
Author(s): Trille Kristina Kjær, Ida Rask Moustsen-Helms, Vanna Albieri, Signe Benzon Larsen, Thea Helene Degett, Anne Tjønneland, Christoffer Johansen, Susanne K. Kjær, Ismail Gögenür, Susanne Oksbjerg Dalton
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.692845

Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici
Cited by: 9
Author(s): Berit Samils, B. Andersson, Eva Edin, Malin Elfstrand, Tilman Rönneburg, Diana Bucur, Fiona Hutton, Thies Marten Heick, Pierre Hellin, Steven Kildea
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0218165

Large-scale probabilistic identification of boreal peatlands using Google Earth Engine, open-access satellite data, and machine learning
Cited by: 38
Author(s): Evan R. DeLancey, Jahan Kariyeva, Jason T. Bried, Jennifer N. Hird
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0223569

Transepithelial transport of P-glycoprotein substrate by the Malpighian tubules of the desert locust
Cited by: 3
Author(s): Marta Rossi, Davide De Battisti, Jeremy E. Niven
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijms21228640

Whole Transcriptome Analysis of Myeloid Dendritic Cells Reveals Distinct Genetic Regulation in Patients with Allergies
Cited by: 5
Author(s): Kijeong Lee, Mi Ryung Han, Ji Yeon, Byoung Jae Kim, Tae Hoon Kim
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0188244

Translating statistical species-habitat models to interactive decision support tools
Cited by: 9
Author(s): Lyndsie S. Wszola, Victoria L. Simonsen, Erica F. Stuber, Caitlyn R. Gillespie, Lindsey N. Messinger, Karie L. Decker, Jeffrey J. Lusk, Christopher F. Jorgensen, Andy Bishop, Joseph J. Fontaine
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSphere.00558-19

Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia
Cited by: 41
Author(s): Lu Wu, Tiansheng Zeng, Massimo Deligios, Luciano Milanesi, Morgan G. I. Langille, Angelo Zinellu, Salvatore Rubino, Ciriaco Carru, David J. Kelvin
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-79491-9

Effects of climate change and land cover on the distributions of a critical tree family in the Philippines
Cited by: 16
Author(s): Sean E. H. Pang, Jose Don T. De Alban, Edward L. Webb
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.586614

Deciphering Microbial Community Dynamics and Biochemical Changes During Nyons Black Olive Natural Fermentations
Cited by: 18
Author(s): Marine Penland, Stéphanie-Marie Deutsch, Hélène Falentin, Audrey Pawtowski, Elisabeth Poirier, Giorgia Visenti, Christophe Le Meur, Marie-Bernadette Maillard, Anne Thierry, Jérôme Mounier, Monika Coton
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-018-1276-7

Impact of Glossina pallidipes salivary gland hypertrophy virus (GpSGHV) on a heterologous tsetse fly host, Glossina fuscipes fuscipes
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Andrew G. Parker, Marc J. B. Vreysen, Robert L. Mach, Jérémy Bouyer, Peter Takáč, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0255370

Inclusion of photoautotrophic cultivated diatom biomass in salmon feed can deter lice
Cited by: 2
Author(s): Hans Christian Eilertsen, Edel O. Elvevoll, Ingeborg Hulda Giæver, Jon Brage Svenning, Lars Dalheim, Ragnhild Aven Svalheim, Birthe Vang, Sten Ivar Siikavuopio, Ragnhild Dragøy, Richard Andre Ingebrigtsen, Espen Hansen, Anette Hustad, Karl‐Erik Eilertsen
Software Mentions: 4
Published: about 5 years ago

10.1038/s41419-017-0173-6

Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation
Cited by: 22
Author(s): Yanjian Li, Yi He, Zhengyu Liang, Yang Wang, Fengling Chen, Mohamed Nadhir Djekidel, Guipeng Li, Xu Zhang, Shuqin Xiang, Zejun Wang, Juntao Gao, Michael Q. Zhang, Chen Yang
Software Mentions: 4
Published: over 8 years ago

10.1128/mSphere.00451-20

Assessing the Variation within the Oral Microbiome of Healthy Adults
Cited by: 43
Author(s): Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, Morgan G. I. Langille
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.01641

Enhanced Killing and Antibiofilm Activity of Encapsulated Cinnamaldehyde against Candida albicans
Cited by: 57
Author(s): Shahper N. Khan, Shakir Khan, Jawaid Iqbal, Rosina Khan, Asad Khan
Software Mentions: 4
Published: almost 9 years ago

10.3390/life11080835

Identification of Autophagy- and Ferroptosis-Related lncRNAs Functioned through Immune-Related Pathways in Head and Neck Squamous Carcinoma
Cited by: 9
Author(s): Qi Guo, Xuehan Zhang, Tao Shen, Xiangting Wang
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: over 5 years ago

10.1038/s41419-021-04144-2

LncRNA PCBP1-AS1-mediated AR/AR-V7 deubiquitination enhances prostate cancer enzalutamide resistance
Cited by: 19
Author(s): Boya Zhang, Mingpeng Zhang, Chunyi Shen, Guancong Liu, Fan Zhang, Jingyu Hou, Weitao Yao
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-79924-5

Urban street tree biodiversity and antidepressant prescriptions
Cited by: 74
Author(s): Melissa R. Marselle, Diana E. Bowler, Jan Watzema, David Eichenberg, Toralf Kirsten, Aletta Bonn
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0131548

Genotoxic Evaluation of Mexican Welders Occupationally Exposed to Welding-Fumes Using the Micronucleus Test on Exfoliated Oral Mucosa Cells: A Cross-Sectional, Case-Control Study
Cited by: 14
Author(s): Ana Cecilia Jara-Ettinger, Juan C. López-Tavera, María Guadalupe Zavala-Cerna, Olivia Torres-Bugarı́n
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-78983-y

Local injections of β-NGF accelerates endochondral fracture repair by promoting cartilage to bone conversion
Cited by: 13
Author(s): Kevin O. Rivera, Fabrizio Russo, Ryan M. Boileau, Ryan E. Tomlinson, Theodore Miclau, Ralph Marcucio, Tejal A. Desai, Chelsea S. Bahney
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78366-3

Human kidney clonal proliferation disclose lineage-restricted precursor characteristics
Cited by: 7
Author(s): Osnat Cohen-Zontag, Rotem Gershon, Orit Harari‐Steinberg, Itamar Kanter, Dorit Omer, Oren Pleniceanu, Gal Tam, Sarit Oriel, H Ben-Hur, Guy Katz, Zohar Dotan, Tomer Kalisky, Benjamin Dekel, Naomi Pode‐Shakked
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78841-x

Gravettian cranial morphology and human group affinities during the European Upper Palaeolithic
Cited by: 6
Author(s): Aurélien Mounier, Yann Heuzé, Mathilde Samsel, Sergey Vasilyev, Laurent Klaric, Sébastien Villotte
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1038/s41419-020-2289-3

Oncogene-dependent function of BRG1 in hepatocarcinogenesis
Cited by: 21
Author(s): Pan Wang, Xinhua Song, Dan Cao, Kairong Cui, Jingxiao Wang, Kirsten Utpatel, Runze Shang, Haichuan Wang, Li Che, Matthias Evert, Keji Zhao, Diego F. Calvisi, Xin Chen
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-021-01939-3

Identification of an immune-related signature indicating the dedifferentiation of thyroid cells
Cited by: 10
Author(s): Xuemin Wang, Wen Peng, Chunyan Li, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 4
Published: over 5 years ago

10.1128/mSphere.00009-21

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality
Cited by: 16
Author(s): Scott Black Pollara, Jamie W. Becker, Brook L. Nunn, Rene Boiteau, Daniel J. Repeta, Miranda C. Mudge, Grayton Downing, Davis Chase, Elizabeth L. Harvey, Kristen E. Whalen
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0254254

Seasonal and diel activity patterns of the endangered taiga bean goose (Anser fabalis fabalis) during the breeding season, monitored with camera traps
Cited by: 2
Author(s): Milaja Nykänen, Hannu Pöysä, Sari Hakkarainen, Tiina Rajala, Juho Matala, Mervi Kunnasranta
Software Mentions: 4
Published: about 5 years ago

10.1186/s12866-015-0351-6

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
Cited by: 365
Author(s): J. Paul Brooks, D.J. Edwards, Michael Harwich, Maria C. Rivera, Jennifer M. Fettweis, Myrna G. Serrano, Robert Reris, Nihar U. Sheth, Bernice Huang, Philippe H. Girerd, Jerome F. Strauss, Kimberly K. Jefferson, Gregory A. Buck
Software Mentions: 4
Published: over 11 years ago

10.3389/fmicb.2018.01249

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration
Cited by: 12
Author(s): Laura Zinke, Brandi Kiel Reese, James McManus, C. G. Wheat, Beth N. Orcutt, Jan P. Amend
Software Mentions: 4
Published: about 8 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: about 5 years ago

10.1038/s41420-021-00473-5

The role of ferroptosis in breast cancer patients: a comprehensive analysis
Cited by: 54
Author(s): Zeng-Hong Wu, Yun Tang, Hong Yu, Huadong Li
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-019-1705-4

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination
Cited by: 31
Author(s): Anne-Sophie Fiorucci, Clara Bourbousse, Lorenzo Concia, Martin Rougée, Anne-Flore Deton-Cabanillas, Gérald Zabulon, Elodie Layat, David Latrasse, Soon Kap Kim, Nicole Chaumont, Bérangère Lombard, David Stroebel, Sophie Lemoine, Ammara Mohammad, Corinne Blugeon, Damarys Loew, Christophe Bailly, Chris Bowler, Moussa Benhamed, Frédy Barneche
Software Mentions: 4
Published: over 7 years ago

10.1038/s41420-021-00462-8

NR5A2 transcriptional activation by BRD4 promotes pancreatic cancer progression by upregulating GDF15
Cited by: 10
Author(s): Feng Guo, Yingke Zhou, Hui Guo, Dianyun Ren, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0147924

Semantic Factors Predict the Rate of Lexical Replacement of Content Words
Cited by: 23
Author(s): Susanne Vejdemo, Thomas Hörberg
Software Mentions: 4
Published: over 10 years ago

10.1186/s40880-019-0369-5

Dual prognostic role of 2‐oxoglutarate‐dependent oxygenases in ten cancer types: implications for cell cycle regulation and cell adhesion maintenance
Cited by: 43
Author(s): Wai Hoong Chang, Dónall Forde, Alvina G. Lai
Software Mentions: 4
Published: over 7 years ago

10.1128/mSystems.00133-16

SSUnique: Detecting Sequence Novelty in Microbiome Surveys
Cited by: 4
Author(s): Michael D. J. Lynch, Josh D. Neufeld
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2021.650828

Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-77033-x

Moving targets in drug discovery
Cited by: 20
Author(s): Barbara Zdrazil, Lars Richter, Nathan Brown, Rajarshi Guha
Software Mentions: 4
Published: almost 6 years ago

10.1038/s42003-019-0606-0

Divergent evolutionary trajectories following speciation in two ectoparasitic honey bee mites
Cited by: 49
Author(s): Maéva Angélique Techer, Rahul Rane, Miguel L. Grau, John M. K. Roberts, Shawn Sullivan, Ivan Liachko, Anna K. Childers, Jay D. Evans, Alexander S. Mikheyev
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00211-17

Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese
Cited by: 55
Author(s): Andrea S. Bertuzzi, Aaron M. Walsh, Jeremiah J. Sheehan, Paul D. Cotter, Fiona Crispie, P.L.H. McSweeney, Kieran N. Kilcawley, Mary C. Rea
Software Mentions: 4
Published: over 8 years ago

10.3390/nu13020619

Serum Selenium Status as a Diagnostic Marker for the Prognosis of Liver Transplantation
Cited by: 11
Author(s): Safak Gül‐Klein, Deana Haxhiraj, Julian Seelig, Anika Kästner, Julian Hackler, Qian Sun, Raban Arved Heller, Nils Lachmann, Johann Pratschke, Moritz Schmelzle, Lutz Schomburg
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22157939

Comparative Transcriptome Analysis of Human Adipose-Derived Stem Cells Undergoing Osteogenesis in 2D and 3D Culture Conditions
Cited by: 5
Author(s): Byung Chul Kim, Kyu Hwan Kwack, Jeewan Chun, Jae Hyung Lee
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1003031

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
Cited by: 255
Author(s): Lauren M. Bragg, Graham N. Stone, Margaret K. Butler, Philip Hugenholtz, Gene W. Tyson
Software Mentions: 4
Published: over 13 years ago

10.3390/ijms22157804

Skin Wound Healing Rate in Fish Depends on Species and Microbiota
Cited by: 9
Author(s): Tery Yun, Soeun Shin, Kyungwon Bang, Mugeun Lee, Jung-Ah Cho, Min Won Baek
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22147250

Drugs and Epigenetic Molecular Functions. A Pharmacological Data Scientometric Analysis
Cited by: 5
Author(s): Dario Kringel, Sebastian Malkusch, Jörn Lötsch
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22147699

Impact of Long-Term Enzyme Replacement Therapy on Glucosylsphingosine (Lyso-Gb1) Values in Patients with Type 1 Gaucher Disease: Statistical Models for Comparing Three Enzymatic Formulations
Cited by: 9
Author(s): Tama Dinur, Ulrike Grittner, Shoshana Revel‐Vilk, Michal Becker‐Cohen, Majdolen Istaiti, Claudia Cozma, Arndt Rolfs, Ari Zimran
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/5549298

Bioinformatic Analysis of Prognostic and Immune-Related Genes in Pancreatic Cancer
Cited by: 2
Author(s): Ziang Li, Chang Hu, Zhiqiang Yang, Minlan Yang, Jiayu Fang, Xuhong Zhou
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00150-18

Marine Sponges as Chloroflexi Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade
Cited by: 61
Author(s): Kristina Bayer, Martin T. Jahn, Beate M. Slaby, Lucas Moitinho‐Silva, Ute Hentschel
Software Mentions: 4
Published: almost 8 years ago

10.1016/j.csbj.2020.12.011

Active phase prebiotic feeding alters gut microbiota, induces weight-independent alleviation of hepatic steatosis and serum cholesterol in high-fat diet-fed mice
Cited by: 11
Author(s): Shreya Ghosh, Yifan Yang, Linghua Wang, Chenhong Zhang, Liping Zhao
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00029-19

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
Cited by: 82
Author(s): Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1009144

PEDF, a pleiotropic WTC-LI biomarker: Machine learning biomarker identification and validation
Cited by: 5
Author(s): George Crowley, James Kim, Sophia Kwon, Rachel Lam, David J. Prezant, Mengling Liu, Anna Nolan
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00177-19

A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis
Cited by: 12
Author(s): Holly L. Lutz, Shamayim T. Ramírez-Puebla, Lisa Abbo, Amber Durand, Cathleen Schlundt, Neil Gottel, Alexandra K. Sjaarda, Roger T. Hanlon, Jack A. Gilbert, Jessica L. Mark Welch
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00290-19

Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments
Cited by: 149
Author(s): Lisa Karstens, Mark Asquith, Sean Davin, Damien A. Fair, W. Thomas Gregory, Alan J. Wolfe, Jonathan Braun, Shannon K. McWeeney
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1002533

Quality of Computationally Inferred Gene Ontology Annotations
Cited by: 107
Author(s): Nives Škunca, Adrian M. Altenhoff, Christophe Dessimoz
Software Mentions: 4
Published: about 14 years ago

10.3389/fmicb.2020.00982

Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies
Cited by: 27
Author(s): Carla Perez-Mon, Beat Frey, Aline Frossard
Software Mentions: 4
Published: over 6 years ago

10.1093/conphys/cox032

The quantification of reproductive hormones in the hair of captive adult brown bears and their application as indicators of sex and reproductive state
Cited by: 30
Author(s): Marc Cattet, Gordon B. Stenhouse, David M. Janz, Luciene Kapronczai, Joy A. Erlenbach, Heiko T. Jansen, O. Lynne Nelson, Charles T. Robbins, John Boulanger
Software Mentions: 4
Published: over 9 years ago

10.1128/mSystems.00327-19

Longitudinal Comparison of Bacterial Diversity and Antibiotic Resistance Genes in New York City Sewage
Cited by: 19
Author(s): Susan Joseph, Thomas Battaglia, Julia M. Maritz, Jane M. Carlton, Martin J. Blaser
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00484-19

Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia
Cited by: 21
Author(s): Feargal J. Ryan, Damian Paul Drew, Chloe A. Douglas, Lex E. X. Leong, Max Moldovan, Miriam A. Lynn, Naomi Fink, Anastasia Sribnaia, Irmeli A. Penttila, Andrew J McPhee, Carmel T Collins, Maria Makrides, Robert Gibson, Geraint B. Rogers, David J. Lynn
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.01287

Quorum Sensing Signals Alter in vitro Soil Virus Abundance and Bacterial Community Composition
Cited by: 12
Author(s): Xiaolong Liang, Regan E. Wagner, Bingxue Li, Ning Zhang, Mark Radosevich
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2016.01078

Region 4 of Rhizobium etli Primary Sigma Factor (SigA) Confers Transcriptional Laxity in Escherichia coli
Cited by: 1
Author(s): Orlando Santillán, Miguel A. Ramı́rez-Romero, Luis Lozano, Alberto Checa, Sergio Encarnación, Guillermo Dávila
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2021.703014

Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds
Cited by: 14
Author(s): Flavia Tarquinio, Océane Attlan, Mathew A. Vanderklift, Oliver Berry, Andrew Bissett
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pbio.3000358

Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen
Cited by: 30
Author(s): Teresa R. O’Meara, Matthew J. O’Meara, Elizabeth J. Polvi, Mohammad Reza Pourhaghighi, Sean D. Liston, Zhen‐Yuan Lin, Amanda O. Veri, Andrew Emili, Anne‐Claude Gingras, Leah E. Cowen
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pbio.3001230

Adipose triglyceride lipase protects renal cell endocytosis in a Drosophila dietary model of chronic kidney disease
Cited by: 23
Author(s): Aleksandra Lubojemska, M. Irina Stefana, Sebastian Sorge, Andrew P. Bailey, Lena Lampe, Azumi Yoshimura, Alana Burrell, Lucy Collinson, Alex P. Gould
Software Mentions: 4
Published: over 5 years ago

10.1186/s13054-020-2788-8

Dynamic LTR retrotransposon transcriptome landscape in septic shock patients
Cited by: 5
Author(s): Marine Mommert, Olivier Tabone, Audrey Guichard, Guy Oriol, Elisabeth Cerrato, Mélanie Denizot, Valérie Cheynet, Alexandre Pachot, Alain Lepape, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00547-19

Toward Standards in Clinical Microbiota Studies: Comparison of Three DNA Extraction Methods and Two Bioinformatic Pipelines
Cited by: 31
Author(s): Quinten R Ducarmon, Bastian Hornung, A. R. Geelen, E. Kuijper, Romy D. Zwittink
Software Mentions: 4
Published: over 6 years ago

10.3390/nu13072180

Impact of Glucosamine Supplementation on Gut Health
Cited by: 3
Author(s): Jessica M. Moon, Peter Finnegan, Richard A. Stecker, Hanna Lee, Kayla M. Ratliff, Ralf Jäger, Martin Purpura, Carolyn M. Slupsky, Maria L. Marco, Craig J. Wissent, Jason Theodosakis, Chad M. Kerksick
Software Mentions: 4
Published: about 5 years ago

10.1186/s13054-017-1800-4

Early troponin I in critical illness and its association with hospital mortality: a cohort study
Cited by: 22
Author(s): Annemarie B Docherty, Malcolm Sim, João Diogo Oliveira, Michael Adlam, Marlies Ostermann, Timothy Walsh, John Kinsella, Nazir Lone
Software Mentions: 4
Published: about 9 years ago

10.1128/mSystems.00783-19

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale
Cited by: 61
Author(s): Kaoping Zhang, Manuel Delgado‐Baquerizo, Yong‐Guan Zhu, Haiyan Chu
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00334-20

Human Milk Oligosaccharides Modulate the Risk for Preterm Birth in a Microbiome-Dependent and -Independent Manner
Cited by: 9
Author(s): Manuela-Raluca Pausan, V Kolovetsiou-Kreiner, Gesa Richter, Tobias Madl, Elisabeth Giselbrecht, Barbara Obermayer‐Pietsch, Eva-Christine Weiss, Evelyn Jantscher-Krenn, Christine Moissl-Eichinger
Software Mentions: 4
Published: about 6 years ago

10.1155/2017/8038460

Utilisation of Intermediate Care Units: A Systematic Review
Cited by: 40
Author(s): Joost D J Plate, Luke P. H. Leenen, Marijn Houwert, Falco Hietbrink
Software Mentions: 4
Published: over 9 years ago

10.2135/cropsci2018.01.0060

Genetic Variation and Trait Correlations in an East African Cassava Breeding Population for Genomic Selection
Cited by: 14
Author(s): Alfred Ozimati, R. Kawuki, Williams Esuma, Siraj Ismail Kayondo, Anthony Pariyo, Marnin D. Wolfe, Jean‐Luc Jannink
Software Mentions: 4
Published: over 7 years ago

10.1186/s12866-018-1283-8

Combining paratransgenesis with SIT: impact of ionizing radiation on the DNA copy number of Sodalis glossinidius in tsetse flies
Cited by: 20
Author(s): Güler Demirbaş-Uzel, Linda De Vooght, Andrew G. Parker, Marc J. B. Vreysen, Robert L. Mach, Jan Van Den Abbeele, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pbio.3000214

Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana
Cited by: 31
Author(s): François Vasseur, Louise Fouqueau, Dominique de Vienne, Thibault Nidelet, Cyrille Violle, Detlef Weigel
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-74753-y

Alcohol use in severely injured trauma patients
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Author(s): Antti Riuttanen, Saara Jäntti, Ville M. Mattila
Software Mentions: 4
Published: almost 6 years ago

10.7759/cureus.12518

Validity of TIMI Score for Predicting 14-Day Mortality of Non-ST Elevation Myocardial Infarction Patients
Cited by: 0
Author(s): Dileep Kumar, Tahir Saghir, Maham Zahid, Arti Ashok, Mukesh Kumar, Asad Hussain Shah, Izza Shahid, Sajjad Ali, Ayema Haque, Musa Karim
Software Mentions: 4
Published: over 5 years ago

10.1002/cam4.1666

The TERT promoter mutation status and MGMT promoter methylation status, combined with dichotomized MRI-derived and clinical features, predict adult primary glioblastoma survival
Cited by: 20
Author(s): Chang Shu, Qiong Wang, Xiaoqian Yan, Jinhuan Wang
Software Mentions: 4
Published: about 8 years ago

10.1093/gbe/evz158

Geography Shapes the Population Genomics of Salmonella enterica Dublin
Cited by: 19
Author(s): Gavin Fenske, Anil J. Thachil, Patrick L. McDonough, Amy L. Glaser, Joy Scaria
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-55632-7

Error associated with estimates of Minimum Infection Rate for Endemic West Nile Virus in areas of low mosquito trap density
Cited by: 9
Author(s): Sulagna Chakraborty, Rebecca L. Smith
Software Mentions: 4
Published: over 6 years ago

10.1093/cdn/nzaa165

Pomegranate Metabolites Impact Tryptophan Metabolism in Humans and Mice
Cited by: 10
Author(s): Jieping Yang, Yuanqiang Guo, Ru-Po Lee, Susanne M. Henning, Jing Wang, Yajing Pan, Tianyu Qing, Mark Hsu, Alex Nguyen, Prabha Siddarth, Rashi Ojha, Gary W. Small, David Heber, Zhaoping Li
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.3000849

In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age
Cited by: 203
Author(s): Nicole A P Lieberman, Vikas Peddu, Hong Xie, Lasata Shrestha, Meei Li Huang, Megan Mears, Maria N.B. Cajimat, Dennis A. Bente, Pei Yong Shi, Francesca T. Bovier, Pavitra Roychoudhury, Keith R. Jerome, Anne Moscona, Matteo Porotto, Alexander L. Greninger
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSystems.00098-20

Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
Cited by: 12
Author(s): Robert Danczak, Rebecca A. Daly, Mikayla A. Borton, James C. Stegen, Simon Roux, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: about 7 years ago

10.3390/life11050367

Activation of Blood Vessel Development in Endometrial Stromal Cells In Vitro Cocultured with Human Peri-Implantation Embryos Revealed by Single-Cell RNA-Seq
Cited by: 4
Author(s): Bo Lv, Xiaoyu Xu, Xunyi Zhang, Lingbin Qi, He We, Lu Wang, Xian Chen, Luying Peng, Jinfeng Xue, Yao Ji, Zhigang Xue
Software Mentions: 4
Published: over 5 years ago

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