cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-82362-6

Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet
Cited by: 11
Author(s): Kelsey E. Witt, Karthik Yarlagadda, Julie M. Allen, Alyssa C. Bader, Mary Simon, Seppe Kuehn, Kelly S. Swanson, Tzu Wen L. Cross, Kristin M. Hedman, Stanley H. Ambrose, Ripan S. Malhi
Software Mentions: 4
Published: over 5 years ago

10.1002/eco.1827

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo
Cited by: 55
Author(s): Sarah H. Luke, Holly Barclay, Kawi Bidin, Chey Vun Khen, Robert M. Ewers, William A. Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C. Turner, R. P. D. Walsh, David C. Aldridge
Software Mentions: 4
Published: over 9 years ago

10.1186/s12885-019-5863-2

Long term outcome after 48 Gy stereotactic ablative body radiotherapy for peripheral stage I non-small cell lung cancer
Cited by: 4
Author(s): Emilie Dubaere, M. Goffaux, Marie Wanet, Benoît Bihin, Céline Gheldof, A S Demoulin, A. Bolly, F. Bustin, Fabrice Duplaquet, P. E. Baugnée, M. Gustin, Vincent Hers, F. Maisin, Éric Marchand, Sebahat Ocak, Lionel Pirard, Oswald Vancutsem, Evelyne Van Neck, G Vandermoten, L. Zaharia, Vincent Remouchamps
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.4421

Sex-specific prey partitioning in breeding piscivorous birds examined via a novel, noninvasive approach
Cited by: 10
Author(s): Bettina Thalinger, Johannes Oehm, Christiane Zeisler, Julia Vorhauser, Michael Traugott
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.2863

A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function
Cited by: 21
Author(s): Case M. Prager, Shahid Naeem, Natalie T. Boelman, Jan U. H. Eitel, Heather E. Greaves, Mary A. Heskel, Troy S. Magney, Duncan N. L. Menge, Lee A. Vierling, Kevin L. Griffin
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7916

Testing the relationship between intraspecific competition and individual specialization across both behavior and diet
Cited by: 3
Author(s): Amaryllis K. Adey, Eric R. Larson
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.5464

Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.3063

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to <scp>CO</scp> 2 ‐acidified sea water
Cited by: 40
Author(s): Allison Bailey, Pierre De Wit, Peter Thor, Howard I. Browman, Reidun M. Bjelland, Steven Shema, David M. Fields, Jeffrey A. Runge, Cameron Thompson, Haakon Hop
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.6529

In the foothill zone—Sabanejewia balcanica(Karaman 1922), in the lowland zone—Sabanejewia bulgarica(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.4406

Interactions between two parasites of brown trout (Salmo trutta ): Consequences of preinfection
Cited by: 7
Author(s): Mikhail Gopko, Mridula Chowdhury, Jouni Taskinen
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6946

Genomic analysis of Asian honeybee populations in China reveals evolutionary relationships and adaptation to abiotic stress
Cited by: 6
Author(s): Peng Shi, Jun Zhou, Huali Song, Yujuan Wu, Lan Lan, Xiangyou Tang, Zhengang Ma, Charles R. Vossbrinck, Bettina Vossbrinck, Zeyang Zhou, Jianlong Xu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81269-6

Chronic BDNF simultaneously inhibits and unmasks superficial dorsal horn neuronal activity
Cited by: 4
Author(s): Sascha R.A. Alles, Max A. Odem, Van B. Lu, Ryan M. Cassidy, Peter A. Smith
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81788-2

Relevance of ddRADseq method for species and population delimitation of closely related and widely distributed wolf spiders (Araneae, Lycosidae)
Cited by: 5
Author(s): Vladislav Ivanov, Yuri M. Marusik, Julien Pétillon, Marko Mutanen
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6989

Effects of maternal genotypic identity and genetic diversity of the red mangrove Rhizophora mangle on associated soil bacterial communities: A field‐based experiment
Cited by: 9
Author(s): Hayley Craig, John Paul Kennedy, Donna J. Devlin, Richard D. Bardgett, Jennifer K. Rowntree
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.2794

Synergistic effects of floral phytochemicals against a bumble bee parasite
Cited by: 46
Author(s): Evan C. Palmer‐Young, Ben M. Sadd, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.4837

The integrative effects of behavior and morphology on amphibian movement
Cited by: 10
Author(s): Evan M. Bredeweg, Anita T. Morzillo, Lindsey L. Thurman, Tiffany S. Garcia
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-80982-6

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants
Cited by: 34
Author(s): Jordan T. Russell, J. Lauren Ruoss, Diomel de la Cruz, Nan Li, Catalina Bazacliu, Laura Patton, Kelley Lobean McKinley, Timothy J. Garrett, Richard A. Polin, Eric W. Triplett, Josef Neu
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12796

Adaptive variation for growth and resistance to a novel pathogen along climatic gradients in a foundation tree
Cited by: 21
Author(s): Collin W. Ahrens, Richard Mazanec, T. Paap, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 4
Published: about 7 years ago

10.1111/eva.12894

Mate choice, reproductive success and inbreeding in white rhinoceros: New insights for conservation management
Cited by: 13
Author(s): Petra Kretzschmar, Hailie Auld, Peter T. Boag, Udo Gansloßer, C. Scott, Peter J. Van Coeverden de Groot, Alexandre Courtiol
Software Mentions: 4
Published: over 6 years ago

10.1111/eva.12407

Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees
Cited by: 27
Author(s): Victoria L. Pritchard, Jaakko Erkinaro, Matthew Kent, Eero Niemelä, Panu Orell, Sigbjørn Lien, Craig R. Primmer
Software Mentions: 4
Published: almost 10 years ago

10.1111/eva.13234

Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its host
Cited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: about 5 years ago

10.1111/eva.13049

Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens
Cited by: 9
Author(s): Kaylee A. Byers, Tom R Booker, Matthew Combs, Chelsea G. Himsworth, Jason Munshi‐South, David M. Patrick, Michael C. Whitlock
Software Mentions: 4
Published: almost 6 years ago

10.1111/eva.12825

Signatures of adaptive divergence among populations of an avian species of conservation concern
Cited by: 10
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Kevin P. Oh, Robert S. Cornman, Sara J. Oyler‐McCance
Software Mentions: 4
Published: almost 7 years ago

10.1002/evl3.243

Larger cells have relatively smaller nuclei across the Tree of Life
Cited by: 11
Author(s): Martino E. Malerba, Dustin J. Marshall
Software Mentions: 4
Published: almost 5 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution ofHeliconiuswings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: over 6 years ago

10.1007/s10493-018-0320-5

Life-history consequences of bidirectional selection for male morph in a male-dimorphic bulb mite
Cited by: 4
Author(s): Tom P. G. Van den Beuken, Isabel M. Smallegange
Software Mentions: 4
Published: over 7 years ago

10.1186/s40164-020-00181-3

The global, regional, and national burden of kidney cancer and attributable risk factor analysis from 1990 to 2017
Cited by: 23
Author(s): Xia Bai, Ming Yi, Bing Dong, Xinhua Zheng, Kongming Wu
Software Mentions: 4
Published: over 5 years ago

10.1038/s12276-021-00627-6

Gut microbiota restoration through fecal microbiota transplantation: a new atopic dermatitis therapy
Cited by: 36
Author(s): Jong-Hwa Kim, Ki‐Young Kim, Wonyong Kim
Software Mentions: 4
Published: about 5 years ago

10.12688/f1000research.6925.1

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
Cited by: 71
Author(s): Raivo Kolde, Jaak Vilo
Software Mentions: 4
Published: almost 11 years ago

10.12688/f1000research.10016.1

Environmental volunteer well-being: Managers’ perception and actual well-being of volunteers
Cited by: 9
Author(s): Gitte Kragh, Richard Stafford, Susanna Curtin, Anita Díaz
Software Mentions: 4
Published: over 9 years ago

10.12688/f1000research.15789.2

TRGAted: A web tool for survival analysis using protein data in the Cancer Genome Atlas.
Cited by: 18
Author(s): Nicholas Borcherding, Nicholas L. Bormann, Andrew P. Voigt, Weizhou Zhang
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-79491-9

Effects of climate change and land cover on the distributions of a critical tree family in the Philippines
Cited by: 16
Author(s): Sean E. H. Pang, Jose Don T. De Alban, Edward L. Webb
Software Mentions: 4
Published: over 5 years ago

10.1186/s12885-016-2652-z

A nomogram for predicting pathological complete response in patients with human epidermal growth factor receptor 2 negative breast cancer
Cited by: 9
Author(s): Xi Jin, Yi Jiang, Sheng Chen, Ke Yu, Ding Ma, Wei Sun, Zhi Min Shao, Gen Hong Di
Software Mentions: 4
Published: almost 10 years ago

10.12688/f1000research.27284.2

What are the long-term symptoms and complications of COVID-19: a protocol for a living systematic review
Cited by: 3
Author(s): Melina Michelen, Hung-Yuan Cheng, Lakshmi Manoharan, Natalie Elkheir, Andrew Dagens, Claire Hastie, Margaret O’Hara, Jake Suett, Dania Dahmash, Paulina Bugaeva, Ishmeala Rigby, Daniel Munblit, Eli Harriss, Amanda Burls, Carol Foote, Janet T. Scott, Gail Carson, Piero Olliaro, Louise Sigfrid, Charitini Stavropoulou
Software Mentions: 4
Published: almost 5 years ago

10.12688/f1000research.4510.2

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
Cited by: 38
Author(s): Keiichiro Ono, Barry Demchak, Trey Ideker
Software Mentions: 4
Published: over 11 years ago

10.1002/2211-5463.13130

CCR7 and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.202781

One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
Cited by: 3
Author(s): Baoquan Han, Lu Wang, Shuai Yu, Wei Ge, Yaqi Li, Hui Jiang, Wei Shen, Zhongyi Sun
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203049

Construction of a novel mRNA-miRNA-lncRNA network and identification of potential regulatory axis associated with prognosis in colorectal cancer liver metastases
Cited by: 8
Author(s): Lu Chen, Xiaochun Luo, Xing Cheng, Yonghuan Mao, Yuting Xu, Wenjie Gao, Wulin Wang, Tian Zhan, Guoguang Wang, Zhengxia Liu, Chang-Feng Yu
Software Mentions: 4
Published: about 5 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-79924-5

Urban street tree biodiversity and antidepressant prescriptions
Cited by: 74
Author(s): Melissa R. Marselle, Diana E. Bowler, Jan Watzema, David Eichenberg, Toralf Kirsten, Aletta Bonn
Software Mentions: 4
Published: over 5 years ago

10.3390/foods10071572

Characterization of Nutritional Quality Traits of a Common Bean Germplasm Collection
Cited by: 15
Author(s): Ester Murube, Romina Beleggia, Deborah Pacetti, Ancuta Nartea, Giulia Frascarelli, Giovanna Lanzavecchia, Elisa Bellucci, Laura Nanni, Tania Gioia, Ugo Marciello, Stefania Esposito, Giacomo Foresi, Giuseppina Logozzo, Giuseppe Natale Frega, Elena Bitocchi, Roberto Papa
Software Mentions: 4
Published: almost 5 years ago

10.1155/2019/1785042

Low GAS5 Levels as a Predictor of Poor Survival in Patients with Lower-Grade Gliomas
Cited by: 18
Author(s): Yanfang Wang, Xin Shan, Kai Zhang, Run Shi, Xuanwen Bao
Software Mentions: 4
Published: over 7 years ago

10.3390/foods10071670

Chemical Elements and the Quality of Mānuka (Leptospermum scoparium) Honey
Cited by: 7
Author(s): Alexandra Meister, María Jesús Gutiérrez-Ginés, Aydin Maxfield, Sally Gaw, Nicholas Dickinson, Jacqui Horswell, Brett Robinson
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-78983-y

Local injections of β-NGF accelerates endochondral fracture repair by promoting cartilage to bone conversion
Cited by: 13
Author(s): Kevin O. Rivera, Fabrizio Russo, Ryan M. Boileau, Ryan E. Tomlinson, Theodore Miclau, Ralph Marcucio, Tejal A. Desai, Chelsea S. Bahney
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78366-3

Human kidney clonal proliferation disclose lineage-restricted precursor characteristics
Cited by: 7
Author(s): Osnat Cohen-Zontag, Rotem Gershon, Orit Harari‐Steinberg, Itamar Kanter, Dorit Omer, Oren Pleniceanu, Gal Tam, Sarit Oriel, H Ben-Hur, Guy Katz, Zohar Dotan, Tomer Kalisky, Benjamin Dekel, Naomi Pode‐Shakked
Software Mentions: 4
Published: over 5 years ago

10.3390/foods8110534

A Comparison of Two Sensory Panels Trained with Different Feedback Calibration Range Specifications via Sensory Description of Five Beers
Cited by: 5
Author(s): Line Elgaard, Line Holler Mielby, Helene Hopfer, Derek V. Byrne
Software Mentions: 4
Published: over 6 years ago

10.3389/fnagi.2017.00383

Hippocampal Transcriptomic Profiles: Subfield Vulnerability to Age and Cognitive Impairment
Cited by: 38
Author(s): Lara Ianov, Matt De Both, Monica K. Chawla, Asha Rani, Andrew Kennedy, Ignazio S. Piras, Jeremy J. Day, Ashley L. Siniard, Ashok Kumar, J. David Sweatt, Carol A. Barnes, Matthew J. Huentelman, Thomas C. Foster
Software Mentions: 4
Published: over 8 years ago

10.1155/2021/5550116

An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: about 5 years ago

10.3389/fnagi.2021.733388

Aging Increases Cross-Modal Distraction by Unexpected Sounds: Controlling for Response Speed
Cited by: 0
Author(s): Alicia Leiva, Pilar Andrés, Fabrice B. R. Parmentier
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12885-020-07702-7

The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma
Cited by: 35
Author(s): Fangshi Xu, Yawen Guan, Li Xue, Sheng‐Li Huang, Ke Gao, Zhen Yang, Tie Chong
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78841-x

Gravettian cranial morphology and human group affinities during the European Upper Palaeolithic
Cited by: 6
Author(s): Aurélien Mounier, Yann Heuzé, Mathilde Samsel, Sergey Vasilyev, Laurent Klaric, Sébastien Villotte
Software Mentions: 4
Published: over 5 years ago

10.3389/fnbeh.2020.618180

PsyCoP – A Platform for Systematic Semi-Automated Behavioral and Cognitive Profiling Reveals Gene and Environment Dependent Impairments of Tcf4 Transgenic Mice Subjected to Social Defeat
Cited by: 8
Author(s): Paul Volkmann, Marius Stephan, Sven Krackow, Niels Rosendal Jensen, Moritz J. Rossner
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1186/s12885-021-08536-7

SERPINE1 associated with remodeling of the tumor microenvironment in colon cancer progression: a novel therapeutic target
Cited by: 26
Author(s): Shaokun Wang, Li Pang, Zuolong Liu, Xiangchuan Meng
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: over 5 years ago

10.3389/fbioe.2020.00266

Characterization of lncRNA-Associated ceRNA Network to Reveal Potential Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 8
Author(s): Yang Wang, Ruyi He, Lixin Ma
Software Mentions: 4
Published: about 6 years ago

10.1186/s12861-015-0085-6

Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species
Cited by: 6
Author(s): Christian Larney, Timothy L. Bailey, Peter Koopman
Software Mentions: 4
Published: over 10 years ago

10.3389/fbioe.2021.666582

nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates
Cited by: 6
Author(s): Carlos A. Contreras-Dávila, Johan Esveld, Cees J.N. Buisman, D.P.B.T.B. Strik
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.101847

Integrated DNA methylation and gene expression analysis in the pathogenesis of coronary artery disease
Cited by: 30
Author(s): Miao Liu, Rong Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: over 7 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: over 9 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcvm.2018.00186

Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation
Cited by: 15
Author(s): Douglas J. Chapski, Manuel Rosa‐Garrido, Haiyang Nan, Frank Alber, Thomas M. Vondriska
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2021.668833

Detection of Hematopoietic Stem Cell Transcriptome in Human Fetal Kidneys and Kidney Organoids Derived From Human Induced Pluripotent Stem Cells
Cited by: 3
Author(s): Jin Wook Hwang, Christophe Desterke, Julien Loisel‐Duwattez, Frank Griscelli, Annelise Bennaceur‐Griscelli, Ali G Turhan
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2020.584604

Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage
Cited by: 16
Author(s): Yeliz Demırcı, Gokhan Cucun, Yusuf Kaan Poyraz, Suhaib Mohammed, Guillaume Heger, Irene Papatheodorou, Günes Özhan
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2020.562662

Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel
Cited by: 6
Author(s): Amy R. Dunn, Niran Hadad, Sarah M. Neuner, Jigang Zhang, Vivek Philip, Logan Dumitrescu, Timothy J. Hohman, Jeremy H. Herskowitz, Kathryn A O’Connell, Catherine C. Kaczorowski
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcell.2021.709241

Characterization of Immune-Related Long Non-coding RNAs to Construct a Novel Signature and Predict the Prognosis and Immune Landscape of Soft Tissue Sarcoma
Cited by: 1
Author(s): Zhengjun Lin, Ke Pang, Hongli Liu, Xianghong Zhang, Jia Wan, Tao Zheng, Tang Liu, Weijun Peng
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2021.688855

Transcriptomics Profiling Identifies Cisplatin-Inducible Death Receptor 5 Antisense Long Non-coding RNA as a Modulator of Proliferation and Metastasis in HeLa Cells
Cited by: 7
Author(s): Dilek Cansu Gürer, İpek Erdoğan, Ulvi Ahmadov, Merve Başol, Osama Sweef, Gulcin Cakan-Akdogan, Bünyamin Akgül
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2021.714718

Opposite Roles of Tumor Cell Proliferation and Immune Cell Infiltration in Postoperative Liver Metastasis of PDAC
Cited by: 0
Author(s): Guangfu Wang, Shangnan Dai, Hao Gao, Yong Gao, Lingdi Yin, Kai Zhang, Xumin Huang, Zipeng Lu, Yi Miao
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2021.628957

Comparative RNA-Seq Transcriptome Analysis on Pulmonary Inflammation in a Mouse Model of Asthma–COPD Overlap Syndrome
Cited by: 6
Author(s): Pei Ma, Shuyi Li, Hui Yang, Jing Yuan, Ziqian Zhang, Xuyu Li, Nan Fang, Mingbao Lin, Qi Hou
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.686886

Platelet-Derived Growth Factor-D Activates Complement System to Propagate Macrophage Polarization and Neovascularization
Cited by: 5
Author(s): Ze Xiong, Qianqian Wang, Wanhong Li, Lijuan Huang, Jianing Zhang, Juanhua Zhu, Bingbing Xie, Shasha Wang, Haiqing Kuang, Xianchai Lin, Chunsik Lee, Anil Kumar, Xuri Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.606065

Identification of Hub Genes and Immune Infiltration in Psoriasis by Bioinformatics Method
Cited by: 8
Author(s): Wenxing Su, Yuqian Wei, Biao Huang, Jiang Ji
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-77033-x

Moving targets in drug discovery
Cited by: 20
Author(s): Barbara Zdrazil, Lars Richter, Nathan Brown, Rajarshi Guha
Software Mentions: 4
Published: over 5 years ago

10.3389/fnhum.2021.684950

Electrophysiological and Transcriptomic Features Reveal a Circular Taxonomy of Cortical Neurons
Cited by: 5
Author(s): Alejandro Rodríguez-Collado, Cristina Rueda
Software Mentions: 4
Published: almost 5 years ago

10.3389/fnhum.2020.00352

Awareness and Stimulus-Driven Spatial Attention as Independent Processes
Cited by: 3
Author(s): Diane Baier, Florian Goller, Ulrich Ansorge
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnhum.2019.00022

Human Sensory LTP Predicts Memory Performance and Is Modulated by the BDNF Val66Met Polymorphism
Cited by: 21
Author(s): Meg J. Spriggs, Christopher Thompson, David Moreau, Nicolas A. McNair, C. Carolyn Wu, Yvette N. Lamb, Nicole S. McKay, Rohan O. C. King, Ushtana Antia, Andrew N. Shelling, Jeff P. Hamm, Timothy J. Teyler, Bruce Russell, Karen E. Waldie, Ian J. Kirk
Software Mentions: 4
Published: over 7 years ago

10.3389/fnhum.2019.00448

Cross-Situational Statistical Learning of New Words Despite Bilateral Hippocampal Damage and Severe Amnesia
Cited by: 7
Author(s): David E. Warren, Tanja C. Roembke, Natalie V. Covington, Bob McMurray, Melissa C. Duff
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2019.02403

Adaptive Features of Natural Killer Cells in Multiple Sclerosis
Cited by: 15
Author(s): Antía Moreira, Elisenda Alari-Pahissa, Elvira Munteis, Antonio Vera, Ana Zabalza, Mireia Llop, Noelia Villarrubia, Marcel Costa‐García, Roberto Álvarez‐Lafuente, Luisa María Villar, Miguel López‐Botet, José Enrique Martínez-Rodríguez
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.670777

Decidual NR2F2-Expressing CD4+ T Cells Promote TH2 Transcriptional Program During Early Pregnancy
Cited by: 2
Author(s): Yan Lin, Di Zhang, Yangyang Li, Yunyun Li, Bin Li, Meirong Du
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.598152

Gut Microbiome of Children and Adolescents With Primary Sclerosing Cholangitis in Association With Ulcerative Colitis
Cited by: 16
Author(s): Ramon V. Cortez, Luana Moreira, Marina Padilha, Mariana D Bibas, Ricardo Katsuya Toma, Gilda Porta, Carla Romano Taddei
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.645770

IFNγ Modulates the Immunopeptidome of Triple Negative Breast Cancer Cells by Enhancing and Diversifying Antigen Processing and Presentation
Cited by: 21
Author(s): Gabriel Gonçalves, Kerry A Mullan, Divya Duscharla, Rochelle Ayala, Nathan P. Croft, Pouya Faridi, Anthony W. Purcell
Software Mentions: 4
Published: about 5 years ago

10.1186/s12902-021-00709-6

Identification of hub genes related to the progression of type 1 diabetes by computational analysis
Cited by: 10
Author(s): G Prashanth, Basavaraj Vastrad, Anandkumar Tengli, Chanabasayya Vastrad, Iranna Kotturshetti
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.652631

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images
Cited by: 19
Author(s): Yunhao Bai, Bokai Zhu, Xavier Rovira-Clavé, Han Chen, Maxim Markovic, Chi N. Chan, Tung–Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2019.00795

Elevated CCL19/CCR7 Expression During the Disease Process of Primary Sjögren's Syndrome
Cited by: 18
Author(s): Zhenwei Liu, Fengxia Li, Axiao Pan, Huangqi Xue, Shan Jiang, Ce Zhu, Mengmeng Jin, Jinxia Fang, Xiongzhao Zhu, Matthew A. Brown, Xiaobing Wang
Software Mentions: 4
Published: about 7 years ago

10.3389/fimmu.2021.686691

Dynamics of the Magnitude, Breadth and Depth of the Antibody Response at Epitope Level Following Dengue Infection
Cited by: 5
Author(s): Francesca Falconi-Agapito, Karen Kerkhof, Xiomara Merino, Johan Míchiels, Marjan Van Esbroeck, Koen Bartholomeeusen, Michael Talledo, Kevin K. Ariën
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.685742

Antibiotic Intervention Affects Maternal Immunity During Gestation in Mice
Cited by: 6
Author(s): Marilen Benner, Alejandro Lopez-Rincon, Suzan Thijssen, Johan Garssen, Gerben Ferwerda, Irma Joosten, Renate G. van der Molen, Astrid Hogenkamp
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.679458

Comparative Proteomic Analysis Reveals Varying Impact on Immune Responses in Phorbol 12-Myristate-13-Acetate-Mediated THP-1 Monocyte-to-Macrophage Differentiation
Cited by: 21
Author(s): Sneha M. Pinto, Hera Kim, Yashwanth Subbannayya, Miriam S. Giambelluca, Korbinian Bösl, Liv Ryan, Animesh Sharma, Richard K. Kandasamy
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2019.00555

Preferential Infiltration of Unique Vγ9Jγ2-Vδ2 T Cells Into Glioblastoma Multiforme
Cited by: 21
Author(s): Mijeong Lee, Chanho Park, Jeongmin Woo, Jin-Ho Kim, Inseong Kho, Do‐Hyun Nam, Woong-Yang Park, Yeonsoo Kim, Doo‐Sik Kong, Hye Won Lee, Tae Jin Kim
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2018.01829

Human Bone Marrow-Resident Natural Killer Cells Have a Unique Transcriptional Profile and Resemble Resident Memory CD8+ T Cells
Cited by: 28
Author(s): Janine Melsen, Gertjan Lugthart, Carly Vervat, Szymon M. Kiełbasa, Sander A.J. van der Zeeuw, Henk P.J. Buermans, Monique M. van Ostaijen-ten Dam, Arjan C. Lankester, Marco W. Schilham
Software Mentions: 4
Published: almost 8 years ago

10.3389/fimmu.2021.691725

Severe COVID-19 Recovery Is Associated with Timely Acquisition of a Myeloid Cell Immune-Regulatory Phenotype
Cited by: 29
Author(s): A.C. Trombetta, Guilherme B. Farias, André M. C. Gomes, Ana Godinho‐Santos, Pedro Rosmaninho, Carolina M. Conceição, Joel Laia, Diana Santos, Afonso R. M. Almeida, Catarina Mota, Andréia Gomes, María Luisa Madueño Serrano, Marc Veldhoen, Ana E. Sousa, S. Fernandes
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.01982

Human Regulatory Dendritic Cells Develop From Monocytes in Response to Signals From Regulatory and Helper T Cells
Cited by: 10
Author(s): Xiangyue Zhang, Pingping Zheng, Tyler R. Prestwood, Hong Zhang, Yaron Carmi, Lorna Tolentino, Nancy Wu, Okmi Choi, Daniel A. Winer, Samuel Strober, Eun‐Suk Kang, Michael N. Alonso, Edgar G. Engleman
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2021.547333

The Immune Heterogeneity Between Pulmonary Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Analysis Based on lncRNA Model
Cited by: 11
Author(s): Tao Yan, Guoyuan Ma, Kai Wang, Weidong Liu, W. L. Zhong, Jiajun Du
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.663736

MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients
Cited by: 8
Author(s): Fatima Heinicke, Xiao Zhong, Siri Tennebø Flåm, Johannes Breidenbach, Magnus Leithaug, Marthe Thoresen Mæhlen, Siri Lillegraven, Anna‐Birgitte Aga, Ellen Sauar Norli, Maria D Mjaavatten, Espen A. Haavardsholm, Manuela Zucknick, Simon Rayner, Benedicte A. Lie
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2018.02523

Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice
Cited by: 4
Author(s): Wendi Bacon, Russell S. Hamilton, Ziyi Yu, Jens Kieckbusch, Dean Hawkes, Ada Maria Krzak, Chris Abell, Francesco Colucci, D. Stephen Charnock-Jones
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2019.01253

Signal Integration of IFN-I and IFN-II With TLR4 Involves Sequential Recruitment of STAT1-Complexes and NFκB to Enhance Pro-inflammatory Transcription
Cited by: 32
Author(s): Anna Piaszyk-Borychowska, Lajos Széles, Attila Csermely, Hsüch‐Ching Chiang, Joanna Wesoły, Chien‐Kuo Lee, László Nagy, Hans A.R. Bluyssen
Software Mentions: 4
Published: about 7 years ago

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Papers Mentioning ggplot2 11,441