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Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README
Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.7150/jca.51173
Identification of a Prognostic Signature Model with Tumor Microenvironment for predicting Disease-free Survival after Radical Prostatectomy
Cited by: 6
Author(s): Hao Zhao, Xuening Zhang, Zhan Shi, Bingxin Guo, Wenli Zhang, Kun He, Xueqi Hu, Songhe Shi
Software Mentions: 4
Published: over 5 years ago
10.1007/s00432-019-03078-9
Transcriptome analysis reveals overlap in fusion genes in a phase I clinical cohort of TNBC and HGSOC patients treated with buparlisib and olaparib
Cited by: 4
Author(s): Julia Eismann, Yujing J. Heng, Johannes M. Waldschmidt, Ioannis S. Vlachos, Kathryn P. Gray, Ursula A. Matulonis, Panagiotis A. Konstantinopoulos, Charles J. Murphy, Sheida Nabavi, Gerburg M. Wulf
Software Mentions: 4
Published: almost 7 years ago
10.1007/s00432-021-03557-y
Are there sex differences among colorectal cancer patients in treatment and survival? A Swiss cohort study
Cited by: 1
Author(s): Manuela Limam, Katarina L. Matthes, Giulia Pestoni, Eleftheria Michalopoulou, Leonhard Held, Silvia Dehler, Dimitri Korol, Sabine Rohrmann
Software Mentions: 4
Published: over 5 years ago
10.1186/s12968-017-0387-x
A novel multiparametric imaging approach to acute myocarditis using T2-mapping and CMR feature tracking
Cited by: 30
Author(s): Bettina Baeßler, Melanie Treutlein, Frank Schaarschmidt, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 4
Published: almost 9 years ago
10.1083/jcb.201711048
A timer for analyzing temporally dynamic changes in transcription during differentiation in vivo
Cited by: 54
Author(s): David Bending, Paz Prieto Martín, Alina Paduraru, Catherine Ducker, Erik Marzaganov, Marie Laviron, Satsuki Kitano, Hitoshi Miyachi, Tessa Crompton, M. Ono
Software Mentions: 4
Published: about 8 years ago
10.1038/s41597-019-0088-4
Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity
Cited by: 7
Author(s): Julia H. Chariker, Cynthia Gomes, Fiona Brabazon, Kathryn A. Harman, Sujata Saraswat Ohri, David S.K. Magnuson, Scott R. Whittemore, Jeffrey C. Petruska, Eric C. Rouchka
Software Mentions: 4
Published: about 7 years ago
10.1007/s12079-020-00575-2
Spermatozoa induce transcriptomic alterations in bovine oviductal epithelial cells prior to initial contact
Cited by: 7
Author(s): Qurat Ul Ain Reshi, Janeli Viil, James Ord, Freddy Lättekivi, Kasun Godakumara, Mohammad Mehedi Hasan, Monika Nõmm, Kersti Jääger, Agne Velthut-Meikas, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 4
Published: almost 6 years ago
10.1111/jcmm.14045
Inhibition of miR-148a-3p resists hepatocellular carcinoma progress of hepatitis C virus infection through suppressing<i>c-Jun</i>and MAPK pathway
Cited by: 27
Author(s): Yibin Deng, Jianchu Wang, Meijin Huang, Guidan Xu, Wujun Wei, Houji Qin
Software Mentions: 4
Published: over 7 years ago
10.1111/jcmm.15505
Asiaticoside might attenuate bleomycin‐induced pulmonary fibrosis by activating cAMP and Rap1 signalling pathway assisted by A2AR
Cited by: 18
Author(s): Jing Luo, Ting Zhang, Ce Zhu, Junwei Sun, Wenjing Zhu, Wenxiu Ai, Xiaoying Huang, Xiaobing Wang
Software Mentions: 4
Published: about 6 years ago
10.1038/sdata.2018.245
Brain metastasis DNA methylomes, a novel resource for the identification of biological and clinical features
Cited by: 18
Author(s): Matthew P. Salomon, Javier I. J. Orozco, James S. Wilmott, Parvinder Hothi, Ayla O. Manughian-Peter, Charles S. Cobbs, Richard A. Scolyer, Dave S.B. Hoon, Diego M. Marzese
Software Mentions: 4
Published: almost 8 years ago
10.1111/jcmm.16133
Identification of Smad3‐related transcriptomes in type‐2 diabetic nephropathy by whole transcriptome RNA sequencing
Cited by: 3
Author(s): Qin Zhou, Hong-Hong Guo, Chaolun Yu, Xiao‐Ru Huang, Lijun Liang, Puhua Zhang, Jia-Kuo Yu, Jizhou Zhang, Ting‐Fung Chan, Rong Ma, Hui‐Yao Lan
Software Mentions: 4
Published: over 5 years ago
10.18632/aging.203168
Cell landscape atlas for patients with chronic thromboembolic pulmonary hypertension after pulmonary endarterectomy constructed using single-cell RNA sequencing
Cited by: 8
Author(s): Ran Miao, Xingbei Dong, Juanni Gong, Yidan Li, Xiaojuan Guo, Jianfeng Wang, Qiang Huang, Ying Wang, Jifeng Li, Suqiao Yang, Tuguang Kuang, Jun Wan, Min Liu, Zhenguo Zhai, Jiuchang Zhong, Yuanhua Yang
Software Mentions: 4
Published: about 5 years ago
10.1111/jcmm.16818
The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
Cited by: 16
Author(s): Chiyuan Zhang, Cuishan Guo, Yan Li, Liang Ouyang, Qi Zhao, Kuiran Liu
Software Mentions: 4
Published: about 5 years ago
10.1242/jcs.215822
The adaptor proteins HAP1a and GRIP1 collaborate to activate kinesin-1 isoform KIF5C
Cited by: 36
Author(s): Alison E. Twelvetrees, Flavie Lesept, Erika L.F. Holzbaur, Josef T. Kittler
Software Mentions: 4
Published: over 7 years ago
10.1098/rsos.160900
Prediction limits of mobile phone activity modelling
Cited by: 4
Author(s): Dániel Kondor, Sébastian Grauwin, Zsófia Kallus, István Gódor, Stanislav Sobolevsky, Carlo Ratti
Software Mentions: 4
Published: over 9 years ago
10.1098/rsos.170210
Climate change, transgenic corn adoption and field-evolved resistance in corn earworm
Cited by: 12
Author(s): P. Dilip Venugopal, Galen P. Dively
Software Mentions: 4
Published: about 9 years ago
10.1098/rsos.171571
Testing social learning of anti-predator responses in juvenile jackdaws: the importance of accounting for levels of agitation
Cited by: 17
Author(s): Guillam E. McIvor, Victoria E. Lee, Alex Thornton
Software Mentions: 4
Published: over 8 years ago
10.1167/jov.20.7.18
How familiarity warps representation in the face space
Cited by: 6
Author(s): Vassiki Chauhan, Ilona Kotlewska, Sunny Tang, M. Ida Gobbini
Software Mentions: 4
Published: about 6 years ago
10.1098/rsos.191024
Variation in life-history traits among <i>Daphnia</i> and its relationship to species-level responses to phosphorus limitation
Cited by: 8
Author(s): Rachel Hartnett
Software Mentions: 4
Published: about 7 years ago
10.1098/rsos.190744
Species-specific effects of passive warming in an Antarctic moss system
Cited by: 14
Author(s): Hannah Prather, Angélica Casanova-Katny, Andrew Clements, Matthew W. Chmielewski, Mehmet Ali Balkan, Erin E. Shortlidge, Todd N. Rosenstiel, Sarah M. Eppley
Software Mentions: 4
Published: almost 7 years ago
10.1098/rsos.191705
Pathogen avoidance and prey discrimination in ants
Cited by: 14
Author(s): Hugo Pereira, Claire Detrain
Software Mentions: 4
Published: over 6 years ago
10.1098/rsos.200419
Genetic analysis of<i>Boletus edulis</i>suggests that intra-specific competition may reduce local genetic diversity as a woodland ages
Cited by: 0
Author(s): Joseph I. Hoffman, Rebecca Nagel, Vivienne Litzke, David A. Wells, William Amos
Software Mentions: 4
Published: about 6 years ago
10.1098/rsos.201797
Seasonal shifts in the competitive ability of macroalgae influence the outcomes of coral–algal competition
Cited by: 6
Author(s): Kristen T. Brown, Dorothea Bender-Champ, Ove Hoegh‐Guldberg, Sophie Dove
Software Mentions: 4
Published: over 5 years ago
10.1098/rsos.210391
Polar bears are inefficient predators of seabird eggs
Cited by: 10
Author(s): Patrick M. Jagielski, Cody J. Dey, H. Grant Gilchrist, Evan S. Richardson, Oliver P. Love, Christina A.D. Semeniuk
Software Mentions: 4
Published: over 5 years ago
10.1098/rsos.201385
The relationship between mental well-being and dysregulated gaming: a specification curve analysis of core and peripheral criteria in five gaming disorder scales
Cited by: 4
Author(s): Nick Ballou, Antonius J. van Rooij
Software Mentions: 4
Published: over 5 years ago
10.1186/s13014-018-1072-4
Real-time intra-fraction motion management in breast cancer radiotherapy: analysis of 2028 treatment sessions
Cited by: 42
Author(s): D. Reitz, Carl Ganter, S. Schönecker, Montserrat Pazos, P. Freislederer, Maximilian Niyazi, Ute Ganswindt, Filippo Alongi, M. J. Reiner, Claus Belka, Stefanie Corradini
Software Mentions: 4
Published: about 8 years ago
10.1186/s13014-020-01572-w
Stability and reproducibility of 6013 deep inspiration breath-holds in left-sided breast cancer
Cited by: 24
Author(s): D. Reitz, Franziska Walter, S. Schönecker, P. Freislederer, Montserrat Pazos, Maximilian Niyazi, Guillaume Landry, Filippo Alongi, Edwin Bölke, Christiane Matuschek, M. J. Reiner, Claus Belka, Stefanie Corradini
Software Mentions: 4
Published: over 6 years ago
10.1186/s12284-020-00404-5
Phenotyping Root Systems in a Set of Japonica Rice Accessions: Can Structural Traits Predict the Response to Drought?
Cited by: 15
Author(s): P. H. R. Guimarães, Isabela Pereira de Lima, Adriano Pereira de Castro, Anna Cristina Lanna, P. G. S. Melo, Marcel De Raı̈ssac
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12977-020-00544-y
Comparative analysis of human microglial models for studies of HIV replication and pathogenesis
Cited by: 34
Author(s): Ammara Mohammad, J. Hammonds, Mario Pujato, Christopher N. Mayhew, Krishna M. Roskin, Paul Spearman
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12958-021-00818-w
Single-cell transcriptome and cell-specific network analysis reveal the reparative effect of neurotrophin-4 in preantral follicles grown in vitro
Cited by: 4
Author(s): Yingchun Guo, Peigen Chen, Tingting Li, Jia Lu, Yi Zhou, Jiana Huang, Xiaoyan Liang, Chuanchuan Zhou, Cong Fang
Software Mentions: 4
Published: almost 5 years ago
10.21203/rs.3.rs-916427/v1
Functional antibody and T-cell immunity following SARS-CoV-2 infection, including by variants of concern, in patients with cancer: the CAPTURE study
Cited by: 0
Author(s): Annika Fendler, Lewis Au, Scott T.C. Shepherd, Fiona Byrne, Maddalena Cerrone, Laura Amanda Boos, Karolina Rzeniewicz, William Gordon, Benjamin Shum, Camille L. Gérard, Barry Ward, Wenyi Xie, Andreas M. Schmitt, Nalinie Joharatnam‐Hogan, Georgina H. Cornish, Martin Pulé, Leila Mekkaoui, Kevin W. Ng, Eleanor Carlyle, Kim Edmonds, Lyra Del Rosario, Sarah Sarker, Karla Lingard, Mary Mangwende, Lucy Holt, Hamid Ahmod, Richard Stone, Camila Gomes, Helen Flynn, Ana Água-Doce, Philip Hobson, Simon Caidan, Michael Howell, Mary Wu, Robert Goldstone, Margaret Crawford, Laura Cubitt, Harshil Patel, Mike Gavrielides, Emma Nye, Ambrosius P. Snijders, James I. MacRae, Jérôme Nicod, Firza Alexander Gronthoud, Robyn Shea, Christina Messiou, David Cunningham, Ian Chau, Naureen Starling, Nicholas Turner, Liam Welsh, Nicholas van As, Robin L. Jones, Joanne Droney, Susana Banerjee, Kate Tatham, Shaman Jhanji, Mary O’Brien, Olivia Curtis, Kevin J. Harrington, Shreerang A. Bhide, Jessica Bazin, Anna Robinson, Clemency Stephenson, Tim Slattery, Yasir Khan, Zayd Tippu, Isla Leslie, Spyridon Gennatas, Alicia Okines, Alison Reid, Kate Young, Andrew J.S. Furness, Lisa Pickering, Sonia Gandhi, Steve Gamblin, Charles Swanton, Emma Nicholson, Sacheen Kumar, Nadia Yousaf, Katalin A. Wilkinson, Anthony J. Swerdlow, Ruth Harvey, George Kassiotis, James Larkin, Robert J. Wilkinson, Samra Turajlic
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12931-021-01755-3
Dysregulation of COVID-19 related gene expression in the COPD lung
Cited by: 22
Author(s): Alastair Watson, Lisa Öberg, B. Angermann, Cosma Spalluto, Michael Hühn, Hannah Burke, Doriana Cellura, Anna Freeman, Daniel Muthas, Damla Etal, Graham Belfield, Fredrik Karlsson, Karl Nordström, Kris Ostridge, Karl Staples, André Freitas
Software Mentions: 4
Published: about 5 years ago
10.1186/s12931-021-01720-0
Lung function trajectories in children with post-prematurity respiratory disease: identifying risk factors for abnormal growth
Cited by: 13
Author(s): Jonathan C. Levin, Catherine A. Sheils, Jonathan M. Gaffin, Craig P. Hersh, Lawrence Rhein, Lystra P. Hayden
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-018-5213-9
Transcriptome analysis of human heart failure reveals dysregulated cell adhesion in dilated cardiomyopathy and activated immune pathways in ischemic heart failure
Cited by: 136
Author(s): Mary E. Sweet, Andrea Cocciolo, Dobromir Slavov, Kenneth L. Jones, Joseph R. Sweet, Sharon Graw, T. Brett Reece, Amrut V. Ambardekar, Michael R. Bristow, Luisa Mestroni, Matthew R.G. Taylor
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12864-019-6043-0
Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird
Cited by: 12
Author(s): Veronika N. Laine, Irene Verhagen, A. Christa Mateman, Agata Pijl, Tony Williams, Phillip Gienapp, Kees van Oers, Marcel E. Visser
Software Mentions: 4
Published: almost 7 years ago
10.1186/1471-2164-14-675
Efficient and accurate whole genome assembly and methylome profiling of E. coli
Cited by: 40
Author(s): Jason Powers, Victor Weigman, Jenny Shu, John Pufky, Donald Cox, Patrick Hurban
Software Mentions: 4
Published: over 13 years ago
10.1186/s12864-018-5255-z
Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole
Cited by: 23
Author(s): Margriet W.J. Hokken, Jan Zoll, Jordy P. M. Coolen, Bas J. Zwaan, Paul E. Verweij, Willem J. G. Melchers
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-021-07417-4
Identification of novel genes involved in neutral lipid storage by quantitative trait loci analysis of Saccharomyces cerevisiae
Cited by: 3
Author(s): Klavdija Pačnik, Mojca Ogrizović, Matthias Diepold, Tobias Eisenberg, Mia Žganjar, Gašper Žun, Beti Kužnik, Cene Gostinčar, Tomaž Curk, Uroš Petrovič, Klaus Natter
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-020-6483-6
Virus expression detection reveals RNA-sequencing contamination in TCGA
Cited by: 21
Author(s): Sara R. Selitsky, David Marron, Daniel P. Hollern, Lisle E. Mose, Katherine A. Hoadley, Corbin D. Jones, Joel S. Parker, Dirk P. Dittmer, Charles M. Perou
Software Mentions: 4
Published: over 6 years ago
10.18632/aging.203352
Development and validation of prognostic model based on the analysis of autophagy-related genes in colon cancer
Cited by: 8
Author(s): Yongfeng Wang, Kaili Lin, Tianchun Xu, Liuli Wang, Liangyin Fu, Guangming Zhang, Jing Ai, Yajun Jiao, Rongrong Zhu, Xiaoyong Han, Hui Cai
Software Mentions: 4
Published: about 5 years ago
10.3390/ijms22042006
Transcriptome Analysis Reveals HgCl2 Induces Apoptotic Cell Death in Human Lung Carcinoma H1299 Cells through Caspase-3-Independent Pathway
Cited by: 2
Author(s): Mi Jin Kim, Jin‐Hong Park, Jin-Ho Kim, Jiyoung Kim, Mi-Jin An, Geun-Seup Shin, Hyun-Min Lee, Chulhong Kim, Jung-Woong Kim
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-021-07646-7
Transcriptomic analysis reveals pronounced changes in gene expression due to sub-lethal pyrethroid exposure and ageing in insecticide resistance Anopheles coluzzii
Cited by: 18
Author(s): Victoria A. Ingham, Faye Brown, Hilary Ranson
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-020-6544-x
Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France
Cited by: 51
Author(s): Federica Di Palma, Thomas Brauge, Nicolas Radomski, Ludovic Mallet, Arnaud Felten, Michel‐Yves Mistou, Anne Brisabois, Laurent Guillier, Graziella Midelet-Bourdin
Software Mentions: 4
Published: over 6 years ago
10.1111/acel.12479
Characterization of the direct targets of <scp>FOXO</scp> transcription factors throughout evolution
Cited by: 158
Author(s): Ashley E. Webb, Anshul Kundaje, Anne Brunet
Software Mentions: 4
Published: over 10 years ago
10.1186/s12864-019-6235-7
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
Cited by: 5
Author(s): Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, María Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12864-021-07503-7
The molecular signatures of compatible and incompatible pollination in Arabidopsis
Cited by: 9
Author(s): Chie Kodera, Jérémy Just, Martine Da Rocha, Antoine Larrieu, Lucie Riglet, Jonathan Legrand, Frédérique Rozier, Thierry Gaude, Isabelle Fobis-Loisy
Software Mentions: 4
Published: over 5 years ago
10.3390/ijms22041912
Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago
10.3390/ijms22041811
Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
Cited by: 15
Author(s): Liina Kinkar, Robin B. Gasser, Bonnie L. Webster, David Rollinson, D. Timothy J. Littlewood, Bill C.H. Chang, Andreas J. Stroehlein, Pasi K. Korhonen, Neil D. Young
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-016-3230-0
Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling
Cited by: 47
Author(s): Beatriz Rosón-Burgo, Fermín Sánchez‐Guijo, Consuelo del Cañizo, Javier De Las Rivas
Software Mentions: 4
Published: almost 10 years ago
10.1186/s12864-017-3884-2
Identification of long non-coding RNA in the horse transcriptome
Cited by: 16
Author(s): Elaine P. Scott, Tamer Mansour, Rebecca R. Bellone, C. Titus Brown, Michael J. Mienaltowski, M. C. T. Penedo, Pablo J. Ross, Stephanie J. Valberg, James D. Murray, Carrie J. Finno
Software Mentions: 4
Published: about 9 years ago
10.1111/all.14633
Single‐cell molecular profiling provides a high‐resolution map of basophil and mast cell development
Cited by: 29
Author(s): Fiona Hamey, Winnie Lau, Iwo Kuciński, Xiaonan Wang, Evangelia Diamanti, Nicola K. Wilson, Berthold Göttgens, Joakim S. Dahlin
Software Mentions: 4
Published: almost 6 years ago
10.1186/s13223-021-00584-9
Expression profiling of ileal mucosa in asthma reveals upregulation of innate immunity and genes characteristic of Paneth and goblet cells
Cited by: 1
Author(s): Jan Krzysztof Nowak, Marzena Dworacka, Nazgul Gubaj, Arystan Dossimov, Zhumabek Dossimov, Jarosław Walkowiak
Software Mentions: 4
Published: about 5 years ago
10.1016/j.jalz.2019.03.007
Inflammatory biomarkers in Alzheimer's disease plasma
Cited by: 118
Author(s): Angharad R. Morgan, Samuel Touchard, Claire Leckey, Caroline O’Hagan, Alejo J. Nevado‐Holgado, Frederik Barkhof, Lars Bertram, Olivier Blin, Isabelle Bos, Valerija Dobričić, Sebastiaan Engelborghs, Giovanni B. Frisoni, Lutz Frölich, Silvey Gabel, Peter Johannsen, Petronella Kettunen, Iwona Kłoszewska, Cristina Legido‐Quigley, Alberto Lleó, Pablo Martínez-Lage, Patrizia Mecocci, Karen Meersmans, José Luís Molinuevo, Gwendoline Peyratout, Julius Popp, Jill C. Richardson, Isabel Sala, Philip Scheltens, Johannes Streffer, Hikka Soininen, Mikel Tainta, Charlotte E. Teunissen, Magda Tsolaki, Rik Vandenberghe, Pieter Jelle Visser, Stephanie J.B. Vos, Lars‐Olof Wahlund, Anders Wallin, Sarah Westwood, Henrik Zetterberg, Simon Lovestone, B. Paul Morgan, Alzheimer’s Disease
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-019-5444-4
The plastid and mitochondrial genomes of Eucalyptus grandis
Cited by: 31
Author(s): Desré Pinard, Alexander Andrew Myburg, Eshchar Mizrachi
Software Mentions: 4
Published: over 7 years ago
10.1186/s13195-021-00871-y
Short leukocyte telomeres predict 25-year Alzheimer's disease incidence in non-APOE ε4-carriers
Cited by: 17
Author(s): Fernanda Schäfer Hackenhaar, Maria Josefsson, Annelie Nordin Adolfsson, Mattias Landfors, Karolina Kauppi, Magnus Hultdin, Rolf Adolfsson, Sofie Degerman, Sara Pudas
Software Mentions: 4
Published: about 5 years ago
10.1186/1471-2164-14-87
The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus
Cited by: 8
Author(s): Emanuel Heitlinger, Stephen Bridgett, Anna Montazam, Horst Taraschewski, Mark Blaxter
Software Mentions: 4
Published: over 13 years ago
10.1186/s12864-020-07240-3
Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions
Cited by: 11
Author(s): Anna Hawliczek, Leszek Bolibok, Katarzyna Tofil, Ewa Borzęcka, Joanna Jankowicz-Cieślak, Piotr Gawroński, Adam Kral, Bradley J. Till, Hanna Bolibok-Brągoszewska
Software Mentions: 4
Published: over 5 years ago
10.1186/1471-2164-14-665
Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
Cited by: 23
Author(s): Matthias Harbers, Sachi Kato, Michiel de Hoon, Yoshihide Hayashizaki, Piero Carninci, Charles Plessy
Software Mentions: 4
Published: almost 13 years ago
10.1186/s12864-017-4411-1
A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of​ ​​Populus​​ ​trees
Cited by: 22
Author(s): Ogonna Obudulu, Niklas Mähler, Tomas Skotare, Joakim Bygdell, Ilka Nacif Abreu, Maria Ahnlund, Madhavi Latha Gandla, Anna Petterle, Thomas Moritz, Torgeir R. Hvidsten, Leif J. Jönsson, Gunnar Wingsle, Johan Trygg, Hannele Tuominen
Software Mentions: 4
Published: over 8 years ago
10.1186/s40478-020-01111-4
Dysfunction in nonsense-mediated decay, protein homeostasis, mitochondrial function, and brain connectivity in ALS-FUS mice with cognitive deficits
Cited by: 12
Author(s): Wan Yun Ho, Ira Agrawal, Sheue-Houy Tyan, Emma Sanford, Wei-Tang Chang, Kenneth Teck Kiat Lim, Jolynn Zu Lin Ong, Bernice Siu Yan Tan, Aung Aung Kywe Moe, Regina Yu, Peiyan Wong, Greg Tucker‐Kellogg, Edward H. Koo, Kai‐Hsiang Chuang, Shuo-Chien Ling
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-019-6188-x
Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale
Cited by: 26
Author(s): Meryl Vila Nova, Kévin Durimel, Kévin La, Arnaud Felten, Philippe Bessières, Michel‐Yves Mistou, Mahendra Mariadassou, Nicolas Radomski
Software Mentions: 4
Published: almost 7 years ago
10.1186/1471-2164-15-884
A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: over 12 years ago
10.3390/ijms21239331
Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower (Helianthus annuus L.)
Cited by: 13
Author(s): Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya, Elizaveta Kolganova, Р. А. Комахин, Г. И. Карлов, A. A. Soloviev
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-020-07260-z
Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum
Cited by: 18
Author(s): Delong Wang, Xuke Lu, Xiugui Chen, Shuai Wang, Junjuan Wang, Lixue Guo, Zujun Yin, Quanjia Chen, Wuwei Ye
Software Mentions: 4
Published: over 5 years ago
10.1186/s12865-020-00344-1
Identification of differentially expressed circulating exosomal lncRNAs in IgA nephropathy patients
Cited by: 17
Author(s): Na Guo, Qin Zhou, Xiang Huang, Jia-Kuo Yu, Qianqian Han, Baoting Nong, Yuanyan Xiong, Peifeng Liang, Jiajia Li, Min Feng, Jun Lv, Qiongqiong Yang
Software Mentions: 4
Published: over 6 years ago
10.1186/s12865-014-0040-5
Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
Cited by: 53
Author(s): Victor Greiff, Ulrike Menzel, Ulrike Haessler, Skylar C. Cook, Simon Friedensohn, Tarik A. Khan, Mark Pogson, Ina Hellmann, Sai T. Reddy
Software Mentions: 4
Published: almost 12 years ago
10.3390/ijms21228640
Whole Transcriptome Analysis of Myeloid Dendritic Cells Reveals Distinct Genetic Regulation in Patients with Allergies
Cited by: 5
Author(s): Kijeong Lee, Mi Ryung Han, Ji Yeon, Byoung Jae Kim, Tae Hoon Kim
Software Mentions: 4
Published: almost 6 years ago
10.1186/s13195-018-0394-7
Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago
10.1186/s12879-020-05600-8
Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: over 5 years ago
10.3390/ijms21176060
Sperm Proteome after Interaction with Reproductive Fluids in Porcine: From the Ejaculation to the Fertilization Site
Cited by: 12
Author(s): Chiara Luongo, Leopoldo González-Brusi, Paula Cots-Rodríguez, M. J. Izquierdo-Rico, Manuel A. Bueno Sánchez, Francisco Alberto García–Vázquez
Software Mentions: 4
Published: about 6 years ago
10.1186/s13195-021-00892-7
Leukotriene receptor antagonist use and cognitive decline in normal cognition, mild cognitive impairment, and Alzheimer’s dementia
Cited by: 10
Author(s): Lisa Y. Xiong, Michael Ouk, Che‐Yuan Wu, Jennifer S. Rabin, Krista L. Lanctôt, Nathan Herrmann, Sandra E. Black, Jodi D. Edwards, Walter Swardfager
Software Mentions: 4
Published: almost 5 years ago
10.3390/ijms21175990
Peripheral Cytokine Levels Differ by HPV Status and Change Treatment-Dependently in Patients with Head and Neck Squamous Cell Carcinoma
Cited by: 14
Author(s): D Mytilineos, Jasmin Ezić, Adrian von Witzleben, Joannis Mytilineos, Ramin Lotfi, Daniel E. Fürst, Chrysanthi Tsamadou, Marie‐Nicole Theodoraki, Angelika Oster, Gunnar Völkel, Hans A. Kestler, Cornelia Brunner, Patrick J. Schuler, Johannes Doescher, Thomas Hoffmann, Simon Laban
Software Mentions: 4
Published: about 6 years ago
10.1016/j.ahj.2016.10.020
Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago
10.3390/ijms21155359
Small Extracellular Vesicles Isolated from Serum May Serve as Signal-Enhancers for the Monitoring of CNS Tumors
Cited by: 17
Author(s): Gabriella Dobra, Mátyás Bukva, Z. G. Szabó, Bella Bruszel, Mária Harmati, Edina Gyukity-Sebestyén, Adrienn Jenei, Mónika Szűcs, Péter Horváth, Tamás Bı́ró, Álmos Klekner, Krisztina Buzás
Software Mentions: 4
Published: about 6 years ago
10.3390/ijms21155265
New Methodology for the Identification of Metabolites of Saccharides and Cyclitols by Off-Line EC-MALDI-TOF-MS
Cited by: 3
Author(s): Gulyaim Sagandykova, Justyna Walczak-Skierska, Fernanda Monedeiro, Paweł Pomastowski
Software Mentions: 4
Published: about 6 years ago
10.1002/ajh.25994
The prognostic value of additional copies of <scp>1q21</scp> in multiple myeloma depends on the primary genetic event
Cited by: 20
Author(s): Maurus Locher, Michael Steurer, Emina Jukic, Markus A. Keller, Friedrich Fresser, Carmen Ruepp, Ewald Wöll, Irmgard Verdorfer, Günther Gastl, Wolfgang Willenbacher, Roman Weger, David Nachbaur, Dominik Wolf, Eberhard Gunsilius, Johannes Zschocke, Normann Steiner
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12920-020-0682-5
A pan-cancer study of class-3 semaphorins as therapeutic targets in cancer
Cited by: 37
Author(s): Xiaoli Zhang, Brett Klamer, Jin Li, Soledad Fernández, Lang Li
Software Mentions: 4
Published: over 6 years ago
10.1186/s12920-021-00954-7
Identification of genes and pathways involved in malignant pleural mesothelioma using bioinformatics methods
Cited by: 3
Author(s): Xingsheng Liu, Kun Qian, Gaojun Lu, Peng Chen, Yi Zhang
Software Mentions: 4
Published: over 5 years ago
10.1186/s12920-020-00757-2
Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma
Cited by: 40
Author(s): Arash Poursheikhani, Mohammad Reza Abbaszadegan, Negin Nokhandani, Mohammad Amin Kerachian
Software Mentions: 4
Published: about 6 years ago
10.1186/1472-6947-11-31
PKreport: report generation for checking population pharmacokinetic model assumptions
Cited by: 6
Author(s): Xiaoyong Sun, Jun Li
Software Mentions: 4
Published: over 15 years ago
10.1186/s12866-020-01771-1
Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia
Cited by: 6
Author(s): Leah J Radeke, Michael A. Herman
Software Mentions: 4
Published: about 6 years ago
10.1186/s12866-017-1132-1
First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts
Cited by: 24
Author(s): Arnaud Felten, Meryl Vila Nova, Kévin Durimel, Laurent Guillier, Michel‐Yves Mistou, Nicolas Radomski
Software Mentions: 4
Published: over 8 years ago
10.1186/s12866-018-1333-2
Low recovery of bacterial community after an extreme salinization-desalinization cycle
Cited by: 4
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12866-018-1154-3
A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
Cited by: 108
Author(s): Rachael Lappan, Kara Imbrogno, Chisha Sikazwe, Denise Anderson, D. Mok, Harvey Coates, Shyan Vijayasekaran, Paul Bumbak, Christopher C Blyth, Sarra E. Jamieson, Christopher Peacock
Software Mentions: 4
Published: over 8 years ago
10.1186/s12866-018-1283-8
Combining paratransgenesis with SIT: impact of ionizing radiation on the DNA copy number of Sodalis glossinidius in tsetse flies
Cited by: 20
Author(s): Güler Demirbaş-Uzel, Linda De Vooght, Andrew G. Parker, Marc J. B. Vreysen, Robert L. Mach, Jan Van Den Abbeele, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12866-015-0351-6
The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
Cited by: 365
Author(s): J. Paul Brooks, D.J. Edwards, Michael Harwich, Maria C. Rivera, Jennifer M. Fettweis, Myrna G. Serrano, Robert Reris, Nihar U. Sheth, Bernice Huang, Philippe H. Girerd, Jerome F. Strauss, Kimberly K. Jefferson, Gregory A. Buck
Software Mentions: 4
Published: over 11 years ago
10.1186/s12866-018-1276-7
Impact of Glossina pallidipes salivary gland hypertrophy virus (GpSGHV) on a heterologous tsetse fly host, Glossina fuscipes fuscipes
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Andrew G. Parker, Marc J. B. Vreysen, Robert L. Mach, Jérémy Bouyer, Peter Takáč, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12866-018-1298-1
RNA interference-based antiviral immune response against the salivary gland hypertrophy virus in Glossina pallidipes
Cited by: 9
Author(s): Irene K. Meki, Henry M. Kariithi, Andrew G. Parker, Marc J. B. Vreysen, V.I.D. Ros, Just M. Vlak, Monique M. van Oers, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago
10.3390/ijms21093187
Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field
Cited by: 18
Author(s): Stephanie Schaarschmidt, Lovely Mae F Lawas, Ulrike Glaubitz, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Dirk K. Hincha, Ellen Zuther
Software Mentions: 4
Published: over 6 years ago
10.3390/ijms21093318
Epigenetic Patterns and Geographical Parthenogenesis in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 7
Author(s): Christoph C. F. Schinkel, Eleni Syngelaki, Bernhard Kirchheimer, Stefan Dullinger, Simone Klatt, Elvira Hörandl
Software Mentions: 4
Published: over 6 years ago
10.1186/s12866-019-1500-0
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Cited by: 101
Author(s): Vincent Somerville, Stefanie Lutz, Michael Schmid, Daniel Frei, Aline Moser, Stefan Irmler, Jürg E. Frey, Christian H. Ahrens
Software Mentions: 4
Published: about 7 years ago
10.1186/s12866-020-01990-6
The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)
Cited by: 17
Author(s): Chenchen Ma, Hongyang Guo, Haibo Chang, Shi Huang, Shuaiming Jiang, Dongxue Huo, Jiachao Zhang, Xiaopeng Zhu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12866-016-0801-9
PCR detection of Burkholderia multivorans in water and soil samples
Cited by: 6
Author(s): Charlotte Peeters, Stijn Daenekindt, Peter Vandamme
Software Mentions: 4
Published: about 10 years ago
10.3390/ijms21062249
AHR Signaling Dampens Inflammatory Signature in Neonatal Skin γδ T Cells
Cited by: 11
Author(s): Katja Merches, Alfonso Schiavi, Heike Weighardt, Swantje Steinwachs, Nadine Teichweyde, Irmgard Förster, K Hochrath, Beatrix Schumak, Natascia Ventura, Patrick Petzsch, Karl Köhrer, Charlotte Esser
Software Mentions: 4
Published: over 6 years ago
10.1186/s12866-020-02002-3
Lifestyle modifications result in alterations in the gut microbiota in obese children
Cited by: 21
Author(s): Ky Young Cho
Software Mentions: 4
Published: over 5 years ago
10.1186/s12866-020-02026-9
A longitudinal study on morpho-genetic diversity of pathogenic Rhizoctonia solani from sugar beet and dry beans of western Nebraska
Cited by: 4
Author(s): Saurav Das, T. Plyler-Harveson, Dipak K. Santra, Bijesh Maharjan, Kathy A. Nielson, Robert M. Harveson
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12891-018-2006-x
No difference in the functional improvements between unilateral and bilateral total knee replacements
Cited by: 16
Author(s): Yao-Ming Huang, Chin Lin, Jung-Mou Yang, Leou-Chyr Lin, Chih-Yuan Mou, Kwo-Tsao Chiang, Man-Gang Lee, Hsin‐An Chang, Hsueh-Lu Chang, Wan‐Fu Su, Shih-Jen Yeh, Hung Chang, Chih‐Chien Wang, Sui-Lung Su
Software Mentions: 4
Published: over 8 years ago
10.1186/s12891-021-04109-8
Major ceRNA regulation and key metabolic signature analysis of intervertebral disc degeneration
Cited by: 7
Author(s): Shuai Cao, Jie Li, Kai Yang, Haopeng Li
Software Mentions: 4
Published: over 5 years ago
10.1186/s12891-020-03705-4
Range of abduction in patients with Legg-Calvé-Perthes disease – a nationwide register-based cohort study
Cited by: 2
Author(s): Ahmad El-Harbiti, Yasmin D. Hailer
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12887-020-02272-w
Breastfeeding patterns in cohort infants at a high-risk fetal, neonatal and child referral center in Brazil: a correspondence analysis
Cited by: 4
Author(s): Maíra Domingues Bernardes Silva, Raquel de Vasconcellos Carvalhaes de Oliveira, José Ueleres Braga, João Aprígio Guerra de Almeida, Enirtes Caetano Prates Melo
Software Mentions: 4
Published: about 6 years ago