cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-30099-0

Spinal arthritis in cane toads across the Australian landscape
Cited by: 3
Author(s): Deborah S. Bower, Kiyomi Yasumiba, Daryl R. Trumbo, Ross A. Alford, Lin Schwarzkopf
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-31168-0

Marchantia liverworts as a proxy to plants’ basal microbiomes
Cited by: 41
Author(s): Luis David Alcaraz, Mariana Peimbert, Hugo R. Barajas, Ana Elena Dorantes-Acosta, John L. Bowman, Mario Arteaga-Vázquez
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-31640-x

Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
Cited by: 28
Author(s): Jennifer Kyle, Gérémy Clair, Gautam Bandyopadhyay, Ravi S. Misra, Erika Zink, Kent Bloodsworth, Anil Shukla, Yina Du, Jacquelyn Lillis, Jason Myers, John M. Ashton, Timothy Bushnell, Matthew Cochran, Gail H. Deutsch, Erin Baker, James P. Carson, Thomas J. Mariani, Yan Xu, Jeffrey A. Whitsett, Gloria S. Pryhuber, Charles Ansong
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-31545-9

Barcoding of Chrysomelidae of Euro-Mediterranean area: efficiency and problematic species
Cited by: 21
Author(s): Giulia Magoga, D. Coral Şahin, Diego Fontaneto, Matteo Montagna
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-32361-x

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model
Cited by: 12
Author(s): Stefan Rupf, Cédric Christian Laczny, Valentina Galata, Christina Backes, Andreas Keller, Natalia Umanskaya, Arzu Erol, Sascha Tierling, Christina Lo Porto, Jörn Walter, Jasmin Kirsch, Matthias Hannig, Christian Hannig
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-32327-z

The allergic response mediated by fire ant venom proteins
Cited by: 13
Author(s): Daniel Zamith-Miranda, Eduardo Gonçalves Paterson Fox, Ana Paula Teixeira Monteiro, Diogo Gama, Luiz E. Poublan, Almair Ferreira de Araújo, Maria Fernanda Carvalho Araujo, Geórgia C. Atella, Ednildo A. Machado, Bruno L. Diaz
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-32904-2

Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.)
Cited by: 33
Author(s): Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Jesús Alejandro Zamora‐Briseño, Enrique Castaño, Francisco Espadas-Gil, Jorge Tonatiuh Ayala-Sumuano, Miguel A. Keb-Llanes, Lorenzo Felipe Sánchez Teyer, Luis Carlos Rodríguez-Zapata
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33116-4

Cholesterol is Inefficiently Converted to Cholesteryl Esters in the Blood of Cardiovascular Disease Patients
Cited by: 42
Author(s): Mathias J. Gerl, Winchil L.C. Vaz, Neuza Domingues, Christian Klose, Michał A. Surma, Júlio L. Sampaio, Jorge Almeida, G Rodrigues, Pedro Araújo-Gonçalves, Jorge Ferreira, Cláudia Borbinha, João Pedro Marto, Miguel Viana-Baptista, Kai Simons, Otília V. Vieira
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-32930-0

Social and nutritional factors shape larval aggregation, foraging, and body mass in a polyphagous fly
Cited by: 17
Author(s): Juliano Morimoto, Binh Nguyen, Shabnam Tarahi Tabrizi, Fleur Ponton, Phillip W. Taylor
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33911-z

Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
Cited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-34858-x

SEPROGADIC – serum protein-based gastric cancer prediction model for prognosis and selection of proper adjuvant therapy
Cited by: 7
Author(s): Hee-Sung Ahn, Tae Sung Sohn, Mi Jeong Kim, Byoung-Kyu Cho, Su Mi Kim, Seung Tae Kim, Eugene C. Yi, Cheolju Lee
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-35578-y

Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage
Cited by: 1
Author(s): Puleng Letuma, Yasir Arafat, Muhammad Mohsin Waqas, Feifan Lin, Wenxiong Lin, Yiyang Zhang, Mamello Masita, Kai Fan, Zhaowei Li
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-36984-y

Comparative transcriptome analysis reveals relationship of three major domesticated varieties of Auricularia auricula-judae
Cited by: 15
Author(s): Yuhui Zhao, Liang Wang, Dongshan Zhang, Rong Li, Tianyou Cheng, Yibi Zhang, Liu Xue-ju, Gary Wong, Yuguo Tang, Hui Wang, Shan Gao
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-36292-5

Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial
Cited by: 39
Author(s): Xuan He, Mariana Parenti, Tove Grip, Magnus Domellöf, Bo Lönnerdal, Olle Hernell, Niklas Timby, Carolyn M. Slupsky
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-37269-0

Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions
Cited by: 67
Author(s): Narinder Singh, Shuangye Wu, W. J. Raupp, Sunish K. Sehgal, Sanu Arora, Vijay K. Tiwari, Prashant Vikram, Sukhwinder Singh, Parveen Chhuneja, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-38049-6

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-40495-9

Differential gene expression induced by Verteporfin in endometrial cancer cells
Cited by: 8
Author(s): Lisa Bang, Venkata Ramesh Dasari, Dokyoon Kim, Radhika Gogoi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-40737-w

A study of the relationship between the level of anxiety declared by MRI patients in the STAI questionnaire and their respiratory rate acquired by a fibre-optic sensor system
Cited by: 26
Author(s): Łukasz Dziuda, Piotr Zieliński, Paulina Baran, Mariusz Krej, Lech Kopka
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-41804-y

Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis
Cited by: 56
Author(s): Francisco J. Ruiz Gómez, Rafael M. Navarro-Cerrillo, Alejandro Pérez‐de‐Luque, W. Oβwald, Andrea Vannini, Carmen Morales‐Rodríguez
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42308-5

Gene Expression Profiles Associated with Brain Aging are Altered in Schizophrenia
Cited by: 12
Author(s): Sarven Sabunciyan
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42190-1

Changes in the Canine Plasma Lipidome after Short- and Long-Term Excess Glucocorticoid Exposure
Cited by: 15
Author(s): Nadja S Sieber-Ruckstuhl, Bo Burla, Susanne Spoerel, Florence Daniela Schmid, Claudio Venzin, Amaury Cazenave-Gassiot, Anne K. Bendt, Federico Torta, Markus R. Wenk, Felicitas S Boretti
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42570-7

Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle
Cited by: 22
Author(s): Shino Tanaka, Mehmet Dayı, Y. Maeda, Isheng Jason Tsai, Ryusei Tanaka, Mark W. Bligh, Yuko Takeuchi-Kaneko, Kenji Fukuda, Natsumi Kanzaki, Taisei Kikuchi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42560-9

De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats
Cited by: 22
Author(s): Diana D. Moreno-Santillán, Carlos Machaín-Williams, Georgina Hernández-Montes, Jorge Ortega
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42733-6

Right hemisphere occipital rTMS impairs working memory in visualizers but not in verbalizers
Cited by: 16
Author(s): Sven Hilbert, Michaela McAssey, Markus Bühner, Patrick Schwaferts, Monika Gruber, Stephan Goerigk, Paul C.J. Taylor
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42692-y

Risks of hydroclimatic regime shifts across the western United States
Cited by: 2
Author(s): Subhrendu Gangopadhyay, Gregory J. McCabe, Gregory T. Pederson, Jessica Martin, Jeremy S. Littell
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42827-1

Contrasting latitudinal patterns in phylogenetic diversity between woody and herbaceous communities
Cited by: 23
Author(s): Jhonny Capichoni Massante, Lars Götzenberger, Krista Takkis, Tiit Hallikma, Ants Kaasik, Lauri Laanisto, Michael J. Hutchings, Pille Gerhold
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-43158-x

An HRM Assay to Differentiate Sheeppox Virus Vaccine Strains from Sheeppox Virus Field Isolates and other Capripoxvirus Species
Cited by: 19
Author(s): Tesfaye Rufael, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Reingard Grabherr, Angelika Loitsch, Eeva Tuppurainen, Nick Nwankpa, K Tounkara, Hafsa Madani, Amel Omani, Mariame Diop, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-43483-1

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection
Cited by: 6
Author(s): Megan A. Schilling, Sahar Memari, Meredith Cavanaugh, Robab Katani, Melissa S. Deist, Jessica Radzio‐Basu, Susan J. Lamont, Joram Buza, Vivek Kapur
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-44230-2

Genetic structure and forensic characteristics of Tibeto-Burman-speaking Ü-Tsang and Kham Tibetan Highlanders revealed by 27 Y-chromosomal STRs
Cited by: 16
Author(s): Guanglin He, Zheng Wang, Yongdong Su, Xing Zou, Mengge Wang, Xu Chen, Bo Gao, Jing Liu, Shouyu Wang, Yiping Hou
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-44547-y

Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure
Cited by: 57
Author(s): Noelle Younge, Christopher B. Newgard, C. Michael Cotten, Ronald N. Goldberg, Michael J. Muehlbauer, James R. Bain, Robert Stevens, Thomas M. O’Connell, John F. Rawls, Patrick C. Seed, Patricia L. Ashley
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-54309-5

Root exudate composition of grass and forb species in natural grasslands
Cited by: 38
Author(s): Sophie Dietz, Katharina Herz, Karin Gorzolka, Ute Jandt, Helge Bruelheide, Dierk Scheel
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-68136-6

Effects of substratum and depth on benthic harmful dinoflagellate assemblages
Cited by: 13
Author(s): Li Keat Lee, Zhen Fei Lim, Haifeng Gu, Leo Lai Chan, R. Wayne Litaker, Patricia A. Tester, Chui Pin Leaw, Po Teen Lim
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-67717-9

Diversity of a bacterial community associated with Cliona lobata Hancock and Gelliodes pumila (Lendenfeld, 1887) sponges on the South-East coast of India
Cited by: 5
Author(s): R. Meenatchi, Pownraj Brindangnanam, Saqib Hassan, Rathna Kumarasamy, George Seghal Kiran, Joseph Selvin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-68450-z

Clinical significance of miR-1180-3p in hepatocellular carcinoma: a study based on bioinformatics analysis and RT-qPCR validation
Cited by: 9
Author(s): Zihan Zhou, Xiaoting Zhou, Yanji Jiang, Moqin Qiu, Xinmiao Liang, Qiuling Lin, Qin Guo, Cunli Nong, Rong‐Rui Huo, Qian Chen, Haizhou Liu, Yingchun Liu, Shao‐Liang Zhu, Mengyun Wang, Hongping Yu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-69218-1

Validity of dynamical analysis to characterize heart rate and oxygen consumption during effort tests
Cited by: 5
Author(s): Denis Mongin, C. Chabert, Adriana Uribe Caparros, Aurélie Collado, Éric Hermand, Olivier Hue, José Ramón Alvero Cruz, Delphine S. Courvoisier
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-69830-1

Clinical outcomes and prognostic factors of robotic assisted rectal cancer resection alone versus robotic rectal cancer resection with natural orifice extraction: a matched analysis
Cited by: 7
Author(s): Dongning Liu, Rui Luo, Zhikai Wan, Weiquan Zhu, Peng He, Shanping Ye, Cheng Tang, Lei Xiong, Taiyuan Li
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-70026-w

Synergistic drug combinations and machine learning for drug repurposing in chordoma
Cited by: 25
Author(s): Edward E. Anderson, Tammy M. Havener, Kimberley M. Zorn, Daniel H. Foil, Thomas R. Lane, Stephen J. Capuzzi, D. F. C. Morris, Anthony Hickey, David H. Drewry, Sean Ekins
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-69856-5

Intracellular and tissue specific expression of FTO protein in pig: changes with age, energy intake and metabolic status
Cited by: 6
Author(s): Karolina Ferenc, Tomaš Pilžys, Damian Garbicz, Michał Marcinkowski, Oleksandr Skorobogatov, Małgorzata Dylewska, Zdzisław Gajewski, Elżbieta Grzesiuk, R. Zabielski
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-70641-7

Surgical procedures in the pilonidal sinus disease: a systematic review and network meta-analysis
Cited by: 32
Author(s): Siwei Bi, Kaibo Sun, Shanshan Chen, Jun Gu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-70582-1

Morphological and genome-wide evidence for natural hybridisation within the genus Stipa (Poaceae)
Cited by: 17
Author(s): Evgenii Baiakhmetov, Arkadiusz Nowak, Polina D. Gudkova, Marcin Nobis
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-69442-9

Detection of genomic regions associated with tiller number in Iranian bread wheat under different water regimes using genome-wide association study
Cited by: 33
Author(s): Sayedeh Saba Bilgrami, Hadi Darzi Ramandi, Vahid Shariati, Khadijeh Razavi, Elahe Tavakol, Barat Ali Fakheri, Nafiseh Mahdi Nezhad, Mostafa Ghaderian
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-71592-9

Long-term effects of western diet consumption in male and female mice
Cited by: 23
Author(s): Yu Hasegawa, Shin-Yu Chen, Lili Sheng, Prasant Kumar Jena, Karen M. Kalanetra, David A. Mills, Yu Wan, Carolyn M. Slupsky
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-73146-5

Ancestral function of Inhibitors-of-kappaB regulates Caenorhabditis elegans development
Cited by: 9
Author(s): David Brena, Joan Bertran, Montserrat Porta-de-la-Riva, Yolanda Guillén, Eric Cornes, Dmytro Kukhtar, Lluís Campos-Vicens, Lierni Fernández, Irene Pecharromán, Albert García-López, Abul B.M.M.K. Islam, Laura Marruecos, Anna Bigas, Julián Cerón, Lluís Espinosa
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-73515-0

Preliminary insights into the impact of primary radiochemotherapy on the salivary microbiome in head and neck squamous cell carcinoma
Cited by: 15
Author(s): Christina Kumpitsch, Christine Moissl-Eichinger, Jakob Pock, Dietmar Thurnher, Axel Wolf
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-73987-0

The SensorOverlord predicts the accuracy of measurements with ratiometric biosensors
Cited by: 4
Author(s): Julian A Stanley, Sean B Johnsen, Javier Apfeld
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-89607-4

Viral load, not food availability or temperature, predicts colony longevity in an invasive eusocial wasp with plastic life history
Cited by: 7
Author(s): Kevin J. Loope, Erin E. Wilson Rankin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90088-8

Targeted neuromodulation of pelvic floor nerves in aging and multiparous rabbits improves continence
Cited by: 3
Author(s): Ana G. Hernández-Reynoso, Dora Luz Corona‐Quintanilla, Kenia López-García, Ana A. Horbovetz, Francisco Castelán, Philippe E. Zimmern, Margarita Martı́nez–Gómez, Mario I. Romero-Ortega
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90226-2

Refinement of 16S rRNA gene analysis for low biomass biospecimens
Cited by: 8
Author(s): Remy Villette, Gaëlle Autaa, Sophie Hind, Johanna B. Holm, Alicia Moreno-Sabater, Martin Larsen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90416-y

Machine learning prediction of sleep stages in dairy cows from heart rate and muscle activity measures
Cited by: 4
Author(s): Laura B. Hunter, Abdul Baten, Marie J. Haskell, Fritha M. Langford, C. E. O'Connor, James R. Webster, Kevin J. Stafford
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90863-7

Artificial neural network analysis of microbial diversity in the central and southern Adriatic Sea
Cited by: 12
Author(s): Danijela Šantić, Kasia Piwosz, Frano Matić, Ana Vrdoljak Tomaš, Jasna Arapov, Jason Dean, Mladen Šolić, Michal Koblížek, Grozdan Kušpilić, Stefanija Šestanović
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-90607-7

Defining the combined stress response in wild Arachis
Cited by: 12
Author(s): Ana Paula Zotta Mota, Ana Cristina Miranda Brasileiro, Bruna Vidigal, Thais Nicolini Oliveira, Andressa da Cunha Quintana Martins, Mario Alfredo de Passos Saraiva, Ana Cláudia Guerra Araújo, Roberto Coiti Togawa, Maria Fátima Grossi-de-Sá, P. M. Guimarães
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-90720-7

Benthic estuarine communities' contribution to bioturbation under the experimental effect of marine heatwaves
Cited by: 3
Author(s): Marina Dolbeth, O. Babe, Dimitri Araujo Costa, Ana P. Mucha, P.G. Cardoso, Francisco Arenas
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-91198-z

The epidemiological landscape of anemia in women of reproductive age in sub-Saharan Africa
Cited by: 10
Author(s): Esteban Correa-Agudelo, Hae Young Kim, Godfrey Musuka, Zindoga Mukandavire, Freeman D. Miller, Frank Tanser, Diego F. Cuadros
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-91864-2

Meta-analysis of gene signatures and key pathways indicates suppression of JNK pathway as a regulator of chemo-resistance in AML
Cited by: 2
Author(s): Parastoo Modarres, Farzaneh Mohamadi Farsani, Amir Abas Nekouie, Sadeq Vallian
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-92507-2

The in-utero experience of piglets born from sows with lameness shapes their life trajectory
Cited by: 8
Author(s): Marisol Parada Sarmiento, Thiago Bernardino, Patrícia Tatemoto, Gina Polo, Adroaldo José Zanella
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-92912-7

MYD88, NFKB1, and IL6 transcripts overexpression are associated with poor outcomes and short survival in neonatal sepsis
Cited by: 12
Author(s): Nouran B. AbdAllah, Eman A. Toraih, Essam Al Ageeli, Hala F. Elhagrasy, Nawal S. Gouda, Manal S. Fawzy, Ghada M. Helal
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-93855-9

Sex and age bias viral burden and interferon responses during SARS-CoV-2 infection in ferrets
Cited by: 10
Author(s): Magen E. Francis, Brian Richardson, Una Goncin, Mara McNeil, Melissa Rioux, Mary K. Foley, Anni Ge, Roger D. Pechous, Jason Kindrachuk, Cheryl M. Cameron, Christopher T. Richardson, J. Lew, Steven Machtaler, Mark J. Cameron, Volker Gerdts, Darryl Falzarano, Alyson A. Kelvin
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-93552-7

Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-94045-3

Landscape transformations produce favorable roosting conditions for turkey vultures and black vultures
Cited by: 9
Author(s): J. E. Hill, Kenneth F. Kellner, Bryan M. Kluever, Michael L. Avery, John S. Humphrey, Eric A. Tillman, Travis L. DeVault, Jerrold L. Belant
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-94541-6

Identification of tumor microenvironment-related prognostic genes in colorectal cancer based on bioinformatic methods
Cited by: 15
Author(s): Yi Liu, Long Cheng, Chao Li, Chen Zhang, Lei Wang, Jiantao Zhang
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95284-0

Neonicotinoids can cause arrested pupal ecdysis in Lepidoptera
Cited by: 4
Author(s): Niranjana Krishnan, Russell A. Jurenka, Steven P. Bradbury
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95544-z

Seasonal and geographic variation in packed cell volume and selected serum chemistry of platypuses
Cited by: 0
Author(s): J.W.B. Stewart, Gilad Bino, Tahneal Hawke, Richard T. Kingsford
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-95739-4

Assessing effectiveness of exclusion fences in protecting threatened plants
Cited by: 6
Author(s): Juan Lorite, Carlos Salazar-Mendías, Roza Pawlak, Eva M. Cañadas
Software Mentions: 4
Published: about 5 years ago

10.1128/mBio.00766-20

Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation
Cited by: 9
Author(s): José Luis López, Mauricio Javier Lozano, María Laura Fabre, Antonio Lagares
Software Mentions: 4
Published: about 6 years ago

10.1128/mBio.02254-20

CPSF6-Dependent Targeting of Speckle-Associated Domains Distinguishes Primate from Nonprimate Lentiviral Integration
Cited by: 27
Author(s): Wen Li, Parmit K. Singh, Gregory A. Sowd, Gregory J. Bedwell, Sungwoo Jang, Vasudevan Achuthan, Amarachi V. Oleru, Doris Wong, Hind J. Fadel, Kyeongeun Lee, Vineet N. KewalRamani, Eric M. Poeschla, Alon Herschhorn, Alan Engelman
Software Mentions: 4
Published: almost 6 years ago

10.1128/mBio.02318-20

Adaptation of Arginine Synthesis among Uropathogenic Branches of the Escherichia coli Phylogeny Reveals Adjustment to the Urinary Tract Habitat
Cited by: 11
Author(s): Michael E. Hibbing, Karen W. Dodson, Vasilios Kalas, Swaine L. Chen, Scott J. Hultgren
Software Mentions: 4
Published: almost 6 years ago

10.1128/mBio.01229-21

Diverse Humoral Immune Responses in Younger and Older Adult COVID-19 Patients
Cited by: 18
Author(s): Jennifer Sasson, Joseph J. Campo, Rebecca Carpenter, Mary K. Young, Arlo Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, Andy Teng, Jozelyn Pablo, Xiaowu Liang, Angela Yee, William A. Petri, David Camerini
Software Mentions: 4
Published: about 5 years ago

10.1128/mBio.01937-21

Mucosal Bacteria Modulate Candida albicans Virulence in Oropharyngeal Candidiasis
Cited by: 16
Author(s): Martinna Bertolini, Roberto Vázquez-Muñoz, Linda Archambault, Siddharth Shah, João Gabriel Silva Souza, Raphael Cavalcante Costa, Angela Thompson, Yanjiao Zhou, Takanori Sobue, Anna Dongari-Bagtzoglou
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSphere.00226-16

Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City
Cited by: 22
Author(s): Holly M. Bik, Julia M. Maritz, Albert Luong, Hakdong Shin, Maria Gloria Domínguez-Bello, Jane M. Carlton
Software Mentions: 4
Published: over 9 years ago

10.1128/mSphereDirect.00283-18

Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture
Cited by: 46
Author(s): Alexander L. Greninger, Pavitra Roychoudhury, Hong Xie, Amanda M. Casto, Anne Cent, Gregory Pepper, David M. Koelle, Meei‐Li Huang, Anna Wald, Christine Johnston, Keith R. Jerome
Software Mentions: 4
Published: about 8 years ago

10.1128/mSphere.00626-18

Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity
Cited by: 15
Author(s): Sarahi L. Garcia, Anna J. Székely, Christoffer Bergvall, Martha Schattenhofer, Sari Peura
Software Mentions: 4
Published: over 7 years ago

10.1128/mSphere.00088-19

Native and Invading Yellow Starthistle (Centaurea solstitialis) Microbiomes Differ in Composition and Diversity of Bacteria
Cited by: 18
Author(s): Patricia Lu‐Irving, Julia G. Harenčár, Hailey Sounart, Shana R. Welles, Sarah M. Swope, David A. Baltrus, Katrina M. Dlugosch
Software Mentions: 4
Published: over 7 years ago

10.1128/mSphere.00528-19

Antibody-Dependent Dengue Virus Entry Modulates Cell Intrinsic Responses for Enhanced Infection
Cited by: 19
Author(s): Chee-Yong Chan, John Z.H. Low, Esther S. Gan, Eugenia Z. Ong, Summer L. Zhang, Hwee Cheng Tan, Xiaoran Chai, Sujoy Ghosh, Eng Eong Ooi, Kap Luk Chan
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSphere.00558-19

Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia
Cited by: 41
Author(s): Lu Wu, Tiansheng Zeng, Massimo Deligios, Luciano Milanesi, Morgan G. I. Langille, Angelo Zinellu, Salvatore Rubino, Ciriaco Carru, David J. Kelvin
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00451-20

Assessing the Variation within the Oral Microbiome of Healthy Adults
Cited by: 43
Author(s): Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, Morgan G. I. Langille
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSphere.00009-21

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality
Cited by: 16
Author(s): Scott Black Pollara, Jamie W. Becker, Brook L. Nunn, Rene Boiteau, Daniel J. Repeta, Miranda C. Mudge, Grayton Downing, Davis Chase, Elizabeth L. Harvey, Kristen E. Whalen
Software Mentions: 4
Published: about 5 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00133-16

SSUnique: Detecting Sequence Novelty in Microbiome Surveys
Cited by: 4
Author(s): Michael D. J. Lynch, Josh D. Neufeld
Software Mentions: 4
Published: over 9 years ago

10.1128/mSystems.00211-17

Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese
Cited by: 55
Author(s): Andrea S. Bertuzzi, Aaron M. Walsh, Jeremiah J. Sheehan, Paul D. Cotter, Fiona Crispie, P.L.H. McSweeney, Kieran N. Kilcawley, Mary C. Rea
Software Mentions: 4
Published: over 8 years ago

10.1128/mSystems.00150-18

Marine Sponges as Chloroflexi Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade
Cited by: 61
Author(s): Kristina Bayer, Martin T. Jahn, Beate M. Slaby, Lucas Moitinho‐Silva, Ute Hentschel
Software Mentions: 4
Published: almost 8 years ago

10.1128/mSystems.00029-19

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
Cited by: 82
Author(s): Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 4
Published: over 7 years ago

10.1128/mSystems.00177-19

A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis
Cited by: 12
Author(s): Holly L. Lutz, Shamayim T. Ramírez-Puebla, Lisa Abbo, Amber Durand, Cathleen Schlundt, Neil Gottel, Alexandra K. Sjaarda, Roger T. Hanlon, Jack A. Gilbert, Jessica L. Mark Welch
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00290-19

Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments
Cited by: 149
Author(s): Lisa Karstens, Mark Asquith, Sean Davin, Damien A. Fair, W. Thomas Gregory, Alan J. Wolfe, Jonathan Braun, Shannon K. McWeeney
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00327-19

Longitudinal Comparison of Bacterial Diversity and Antibiotic Resistance Genes in New York City Sewage
Cited by: 19
Author(s): Susan Joseph, Thomas Battaglia, Julia M. Maritz, Jane M. Carlton, Martin J. Blaser
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00484-19

Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia
Cited by: 21
Author(s): Feargal J. Ryan, Damian Paul Drew, Chloe A. Douglas, Lex E. X. Leong, Max Moldovan, Miriam A. Lynn, Naomi Fink, Anastasia Sribnaia, Irmeli A. Penttila, Andrew J McPhee, Carmel T Collins, Maria Makrides, Robert Gibson, Geraint B. Rogers, David J. Lynn
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00547-19

Toward Standards in Clinical Microbiota Studies: Comparison of Three DNA Extraction Methods and Two Bioinformatic Pipelines
Cited by: 31
Author(s): Quinten R Ducarmon, Bastian Hornung, A. R. Geelen, E. Kuijper, Romy D. Zwittink
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00783-19

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale
Cited by: 61
Author(s): Kaoping Zhang, Manuel Delgado‐Baquerizo, Yong‐Guan Zhu, Haiyan Chu
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00334-20

Human Milk Oligosaccharides Modulate the Risk for Preterm Birth in a Microbiome-Dependent and -Independent Manner
Cited by: 9
Author(s): Manuela-Raluca Pausan, V Kolovetsiou-Kreiner, Gesa Richter, Tobias Madl, Elisabeth Giselbrecht, Barbara Obermayer‐Pietsch, Eva-Christine Weiss, Evelyn Jantscher-Krenn, Christine Moissl-Eichinger
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00098-20

Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
Cited by: 12
Author(s): Robert Danczak, Rebecca A. Daly, Mikayla A. Borton, James C. Stegen, Simon Roux, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: about 7 years ago

10.3390/ijerph16132334

Validation of a Short-Form Version of the Danish Need for Recovery Scale against the Full Scale
Cited by: 7
Author(s): Matthew L Stevens, Patrick Crowley, Anne Helene Garde, Ole Steen Mortensen, Clas‐Håkan Nygård, Andreas Holtermann
Software Mentions: 4
Published: about 7 years ago

10.3390/ijerph17010256

Salivary Microbiome and Cigarette Smoking: A First of Its Kind Investigation in Jordan
Cited by: 32
Author(s): Walid Al-Zyoud, Rima Hajjo, Ahmed Abu-Siniyeh, Sarah Hajjaj
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph17031111

Short-Term Associations of Fine Particulate Matter and Synoptic Weather Types with Cardiovascular Mortality: An Ecological Time-Series Study in Shanghai, China
Cited by: 11
Author(s): Tian Qing, Mei Li, Scott Montgomery, Bo Fang, Chunfang Wang, Tian Xia, Yang Cao
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph17072361

A Systematic Review and Meta-Analysis Investigating the Relationship between Exposures to Chemical and Non-Chemical Stressors during Prenatal Development and Childhood Externalizing Behaviors
Cited by: 6
Author(s): Frances M. Nilsen, Jessica J. Frank, Nicolle S. Tulve
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph17155451

A Meta-Analysis of Stressors from the Total Environment Associated with Children’s General Cognitive Ability
Cited by: 16
Author(s): Frances M. Nilsen, Jazmin Del Carmen Ruiz, Nicolle S. Tulve
Software Mentions: 4
Published: about 6 years ago

10.3390/ijerph17197277

How the Lagged and Accumulated Effects of Stress, Coping, and Tasks Affect Mood and Fatigue during Nurses’ Shifts
Cited by: 4
Author(s): Fermín Martínez-Zaragoza, Jordi Fernández Castro, Gemma Benavides-Gil, Rosa García-Sierra
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijerph18042019

Body Composition, Training Volume/Pattern and Injury Status of Slovenian Adolescent Female High-Performance Gymnasts
Cited by: 4
Author(s): Boštjan Jakše, Barbara Jakše, Ivan Čuk, Dorica Šajber
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18073742

Do Rural Second Homes Shape Commensal Microbiota of Urban Dwellers? A Pilot Study among Urban Elderly in Finland
Cited by: 4
Author(s): Mika Saarenpää, Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Nan Hui, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Ondřej Cinek, Aki Sinkkonen
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18115968

Nutritional, Cardiovascular Health and Lifestyle Status of ‘Health Conscious’ Adult Vegans and Non-Vegans from Slovenia: A Cross-Sectional Self-Reported Survey
Cited by: 15
Author(s): Boštjan Jakše, Barbara Jakše, Uroš Godnov, Stanislav Pinter
Software Mentions: 4
Published: about 5 years ago

10.2196/16113

Deep Learning Approach for Imputation of Missing Values in Actigraphy Data: Algorithm Development Study
Cited by: 14
Author(s): Jong-Hwan Jang, Junggu Choi, Hyun Woong Roh, Sang Joon Son, Chang Hyung Hong, Eun Young Kim, Tae Young Kim, Dukyong Yoon
Software Mentions: 4
Published: about 6 years ago

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