cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1155/2021/5598824

A Nomogram Prediction of Length of Hospital Stay in Patients with COVID-19 Pneumonia: A Retrospective Cohort Study
Cited by: 12
Author(s): Kang Li, Chi Zhang, Ling Qin, Chengxi Zang, Ang Li, Jianping Sun, Yan Zhao, Yingmei Feng, Yonghong Zhang
Software Mentions: 4
Published: about 5 years ago

10.1089/phage.2020.0046

Isolation and Characterization of Klebsiella Phages for Phage Therapy
Cited by: 32
Author(s): Eleanor Townsend, L. Kelly, Lucy Gannon, George Muscatt, Rhys A. Dunstan, Slawomir Michniewski, Hari Sapkota, Saija Kiljunen, Anna Kolsi, Mikael Skurnik, Trevor Lithgow, Andrew Millard, Eleanor Jameson
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203352

Development and validation of prognostic model based on the analysis of autophagy-related genes in colon cancer
Cited by: 8
Author(s): Yongfeng Wang, Kaili Lin, Tianchun Xu, Liuli Wang, Liangyin Fu, Guangming Zhang, Jing Ai, Yajun Jiao, Rongrong Zhu, Xiaoyong Han, Hui Cai
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-019-0715-5

Active eukaryotes in drinking water distribution systems of ground and surface waterworks
Cited by: 21
Author(s): Jenni Inkinen, Balamuralikrishna Jayaprakash, Sallamaari Siponen, Anna-Maria Hokajärvi, Anna Pursiainen, Jenni Ikonen, Ivan Ryzhikov, Martin Täubel, Ari Kauppinen, Jussi Paananen, Ilkka T. Miettinen, Eila Torvinen, Mikko Kolehmainen, Tarja Pitkänen
Software Mentions: 4
Published: almost 7 years ago

10.1111/acel.12479

Characterization of the direct targets of <scp>FOXO</scp> transcription factors throughout evolution
Cited by: 158
Author(s): Ashley E. Webb, Anshul Kundaje, Anne Brunet
Software Mentions: 4
Published: about 10 years ago

10.3390/plants10081572

Genome-Environment Association Analysis for Bio-Climatic Variables in Common Bean (Phaseolus vulgaris L.) from Brazil
Cited by: 3
Author(s): Júlio César Ferreira Elias, Maria Celeste Gonçalves‐Vidigal, Andrea Ariani, Giseli Valentini, Maria da Conceição Martiniano-Souza, Mariana Vaz Bisneta, Paul Gepts
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12870-021-03180-6

Identification of genetic loci associated with major agronomic traits of wheat (Triticum aestivum L.) based on genome-wide association analysis
Cited by: 5
Author(s): Woo Joo Jung, Yong Jin Lee, Kang Chen, Yong Weon Seo
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijerph18115968

Nutritional, Cardiovascular Health and Lifestyle Status of ‘Health Conscious’ Adult Vegans and Non-Vegans from Slovenia: A Cross-Sectional Self-Reported Survey
Cited by: 15
Author(s): Boštjan Jakše, Barbara Jakše, Uroš Godnov, Stanislav Pinter
Software Mentions: 4
Published: about 5 years ago

10.1016/j.ebiom.2019.11.046

Prioritization of novel ADPKD drug candidates from disease-stage specific gene expression profiles
Cited by: 15
Author(s): Tareq B. Malas, Wouter N. Leonhard, Hester Bange, Zoraide Granchi, Kristina Hettne, Gerard J. P. van Westen, Leo Price, Peter A C ‘t Hoen, Dorien J.M. Peters
Software Mentions: 4
Published: over 6 years ago

10.1016/j.ebiom.2021.103264

Hyperinsulinemia and insulin resistance in the obese may develop as part of a homeostatic response to elevated free fatty acids: A mechanistic case-control and a population-based cohort study
Cited by: 40
Author(s): Emanuel Fryk, Josefin Olausson, Karin Mossberg, Lena Strindberg, Martin Schmelz, Helén Brogren, Li‐Ming Gan, Silvano Piazza, Alessandro Provenzani, Barbara Becattini, Lars Lind, Giovanni Solinas, Per‐Anders Jansson
Software Mentions: 4
Published: over 5 years ago

10.1128/mBio.02318-20

Adaptation of Arginine Synthesis among Uropathogenic Branches of the Escherichia coli Phylogeny Reveals Adjustment to the Urinary Tract Habitat
Cited by: 11
Author(s): Michael E. Hibbing, Karen W. Dodson, Vasilios Kalas, Swaine L. Chen, Scott J. Hultgren
Software Mentions: 4
Published: over 5 years ago

10.1016/j.eclinm.2021.101101

Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
Cited by: 26
Author(s): Marycelin Baba, Molalegne Bitew, Joseph Fokam, Eric Agola Lelo, A Ahidjo, Kominist Asmamaw, Grâce Beloumou, Wallace Bulimo, Emanuele Buratti, Collins Chenwi, Hailu Dadi, Pierlanfranco D’Agaro, Laura De Conti, Nadine Fainguem, Galadima Gadzama, Paolo Maiuri, Janet Majanja, Wadegu Meshack, Alexis Ndjolo, Céline Nguefeu Nkenfou, Bamidele Soji Oderinde, Silvanos Opanda, Ludovica Segat, Cristiana Stuani, Samwel L. Symekher, Désiré Takou, Kassahun Tesfaye, Gianluca Triolo, Keyru Tuki, Serena Zacchigna, Alessandro Marcello
Software Mentions: 4
Published: over 4 years ago

10.1128/mBio.02254-20

CPSF6-Dependent Targeting of Speckle-Associated Domains Distinguishes Primate from Nonprimate Lentiviral Integration
Cited by: 27
Author(s): Wen Li, Parmit K. Singh, Gregory A. Sowd, Gregory J. Bedwell, Sungwoo Jang, Vasudevan Achuthan, Amarachi V. Oleru, Doris Wong, Hind J. Fadel, Kyeongeun Lee, Vineet N. KewalRamani, Eric M. Poeschla, Alon Herschhorn, Alan Engelman
Software Mentions: 4
Published: over 5 years ago

10.1186/s13550-017-0318-8

Gut microbiota and physiologic bowel 18F-FDG uptake
Cited by: 16
Author(s): Ji Yeon Kang, Han Na Kim, Yoosoo Chang, Yeojun Yun, Seungho Ryu, Hocheol Shin, Hyung Lae Kim
Software Mentions: 4
Published: almost 9 years ago

10.1128/mBio.00766-20

Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation
Cited by: 9
Author(s): José Luis López, Mauricio Javier Lozano, María Laura Fabre, Antonio Lagares
Software Mentions: 4
Published: almost 6 years ago

10.1111/all.14633

Single‐cell molecular profiling provides a high‐resolution map of basophil and mast cell development
Cited by: 29
Author(s): Fiona Hamey, Winnie Lau, Iwo Kuciński, Xiaonan Wang, Evangelia Diamanti, Nicola K. Wilson, Berthold Göttgens, Joakim S. Dahlin
Software Mentions: 4
Published: over 5 years ago

10.1186/s13223-021-00584-9

Expression profiling of ileal mucosa in asthma reveals upregulation of innate immunity and genes characteristic of Paneth and goblet cells
Cited by: 1
Author(s): Jan Krzysztof Nowak, Marzena Dworacka, Nazgul Gubaj, Arystan Dossimov, Zhumabek Dossimov, Jarosław Walkowiak
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-021-01048-3

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Cited by: 28
Author(s): Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Masami Matsuda, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama, Atsushi Yamazoe, Yuichi Uchino, Keishi Kameyama, Shingo Arioka, Jiro Kataoka, Takayoshi Hisada, Kazuyuki Fujii, Shunsuke Takahashi, Miho Kuroiwa, Masatomo Rokushima, Mitsue Nishiyama, Yoshiki Tanaka, Takuya Fuchikami, Hitomi Aoki, Satoshi Kira, Ryo Koyanagi, Takeshi Naito, Morie Nishiwaki, Hirotaka Kumagai, Mikiko Konda, Keiji Kasahara, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi, Jun Terauchi
Software Mentions: 4
Published: about 5 years ago

10.15252/embj.201899559

Phosphoproteomic screening identifies physiological substrates of the <scp>CDKL</scp> 5 kinase
Cited by: 52
Author(s): Iván Muñoz, Michael Morgan, Julien Peltier, Florian Weiland, Mateusz Gregorczyk, Fiona Brown, Thomas Macartney, Rachel Toth, Matthias Trost, John Rouse
Software Mentions: 4
Published: over 7 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

10.1016/j.jalz.2019.03.007

Inflammatory biomarkers in Alzheimer's disease plasma
Cited by: 118
Author(s): Angharad R. Morgan, Samuel Touchard, Claire Leckey, Caroline O’Hagan, Alejo J. Nevado‐Holgado, Frederik Barkhof, Lars Bertram, Olivier Blin, Isabelle Bos, Valerija Dobričić, Sebastiaan Engelborghs, Giovanni B. Frisoni, Lutz Frölich, Silvey Gabel, Peter Johannsen, Petronella Kettunen, Iwona Kłoszewska, Cristina Legido‐Quigley, Alberto Lleó, Pablo Martínez-Lage, Patrizia Mecocci, Karen Meersmans, José Luís Molinuevo, Gwendoline Peyratout, Julius Popp, Jill C. Richardson, Isabel Sala, Philip Scheltens, Johannes Streffer, Hikka Soininen, Mikel Tainta, Charlotte E. Teunissen, Magda Tsolaki, Rik Vandenberghe, Pieter Jelle Visser, Stephanie J.B. Vos, Lars‐Olof Wahlund, Anders Wallin, Sarah Westwood, Henrik Zetterberg, Simon Lovestone, B. Paul Morgan, Alzheimer’s Disease
Software Mentions: 4
Published: about 7 years ago

10.18632/aging.202765

Pan-cancer analysis identifies ITIH1 as a novel prognostic indicator for hepatocellular carcinoma
Cited by: 7
Author(s): Q Q Chang, Ting Mao, Tao Yan, Tao Dong, Xuan-xuan Tang, Ge Gao, Zi‐jun Xu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1007978

Fast and flexible linear mixed models for genome-wide genetics
Cited by: 46
Author(s): Daniel E. Runcie, Lorin Crawford
Software Mentions: 4
Published: over 7 years ago

10.1186/s12870-019-2055-9

Metabolite profiling during graft union formation reveals the reprogramming of primary metabolism and the induction of stilbene synthesis at the graft interface in grapevine
Cited by: 25
Author(s): Duyên Prodhomme, Josep Valls, Cyril Hévin, Céline Franc, Ghislaine Hilbert, Gilles de Revel, Tristan Richard, Nathalie Ollat, Sarah Jane Cookson
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms8010030

Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines
Cited by: 20
Author(s): Susanne Jacksch, Dominik Kaiser, Severin Weis, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-89366-2

Comparative transcriptomics between Drosophila mojavensis and D. arizonae reveals transgressive gene expression and underexpression of spermatogenesis-related genes in hybrid testes
Cited by: 9
Author(s): Cecília Ártico Banho, Vincent Mérel, Thiago Y. Oliveira, Claudia M. A. Carareto, Cristina Vieira
Software Mentions: 4
Published: about 5 years ago

10.1186/s13195-021-00871-y

Short leukocyte telomeres predict 25-year Alzheimer's disease incidence in non-APOE ε4-carriers
Cited by: 17
Author(s): Fernanda Schäfer Hackenhaar, Maria Josefsson, Annelie Nordin Adolfsson, Mattias Landfors, Karolina Kauppi, Magnus Hultdin, Rolf Adolfsson, Sofie Degerman, Sara Pudas
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0009357

Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program
Cited by: 10
Author(s): Brendan J Trewin, Dan Pagendam, Brian J. Johnson, Chris Paton, Nigel Snoad, Scott A. Ritchie, Kyran M. Staunton, Bradley J. White, Sara N. Mitchell, Nigel W. Beebe
Software Mentions: 4
Published: about 5 years ago

10.1002/eco.1827

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo
Cited by: 55
Author(s): Sarah H. Luke, Holly Barclay, Kawi Bidin, Chey Vun Khen, Robert M. Ewers, William A. Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C. Turner, R. P. D. Walsh, David C. Aldridge
Software Mentions: 4
Published: over 9 years ago

10.1186/s12870-014-0254-y

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
Cited by: 77
Author(s): Dharani Dhar Burra, Oliver Berkowitz, Pete E. Hedley, Jenny Morris, Svante Resjö, Fredrik Levander, Erland Liljeroth, Erik Andréasson, Erik Alexandersson
Software Mentions: 4
Published: over 11 years ago

10.1002/ece3.4421

Sex-specific prey partitioning in breeding piscivorous birds examined via a novel, noninvasive approach
Cited by: 10
Author(s): Bettina Thalinger, Johannes Oehm, Christiane Zeisler, Julia Vorhauser, Michael Traugott
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.2863

A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function
Cited by: 21
Author(s): Case M. Prager, Shahid Naeem, Natalie T. Boelman, Jan U. H. Eitel, Heather E. Greaves, Mary A. Heskel, Troy S. Magney, Duncan N. L. Menge, Lee A. Vierling, Kevin L. Griffin
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7916

Testing the relationship between intraspecific competition and individual specialization across both behavior and diet
Cited by: 3
Author(s): Amaryllis K. Adey, Eric R. Larson
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.5464

Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.3063

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to <scp>CO</scp> 2 ‐acidified sea water
Cited by: 40
Author(s): Allison Bailey, Pierre De Wit, Peter Thor, Howard I. Browman, Reidun M. Bjelland, Steven Shema, David M. Fields, Jeffrey A. Runge, Cameron Thompson, Haakon Hop
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.10799

The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies
Cited by: 23
Author(s): Daniel Marquina, Mateusz Buczek, Fredrik Ronquist, Piotr Łukasik
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-020-02518-w

Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
Cited by: 27
Author(s): Xu Zhang, Yanxia Sun, Jacob B. Landis, Zhenyu Lv, Jun Shen, Huajie Zhang, Nan Lin, Lijuan Li, Jiao Sun, Tao Deng, Hang Sun, Hengchang Wang
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-88363-9

Transcriptional signatures in prefrontal cortex confer vulnerability versus resilience to food and cocaine addiction-like behavior
Cited by: 11
Author(s): Mohit Navandar, Elena Martín‐García, Rafaël Maldonado, Beat Lutz, Susanne Gerber, Iñigo Ruı́z de Azúa
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.6529

In the foothill zone—Sabanejewia balcanica(Karaman 1922), in the lowland zone—Sabanejewia bulgarica(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13195-021-00892-7

Leukotriene receptor antagonist use and cognitive decline in normal cognition, mild cognitive impairment, and Alzheimer’s dementia
Cited by: 10
Author(s): Lisa Y. Xiong, Michael Ouk, Che‐Yuan Wu, Jennifer S. Rabin, Krista L. Lanctôt, Nathan Herrmann, Sandra E. Black, Jodi D. Edwards, Walter Swardfager
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12887-020-02272-w

Breastfeeding patterns in cohort infants at a high-risk fetal, neonatal and child referral center in Brazil: a correspondence analysis
Cited by: 4
Author(s): Maíra Domingues Bernardes Silva, Raquel de Vasconcellos Carvalhaes de Oliveira, José Ueleres Braga, João Aprígio Guerra de Almeida, Enirtes Caetano Prates Melo
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-88516-w

Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB
Cited by: 11
Author(s): Roza Berhanu Lemma, Marit Ledsaak, Bettina M. Fuglerud, Geir Kjetil Sandve, Ragnhild Eskeland, Odd S. Gabrielsen
Software Mentions: 4
Published: about 5 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago

10.1155/2019/1785042

Low GAS5 Levels as a Predictor of Poor Survival in Patients with Lower-Grade Gliomas
Cited by: 18
Author(s): Yanfang Wang, Xin Shan, Kai Zhang, Run Shi, Xuanwen Bao
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0091783

From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System
Cited by: 22
Author(s): Kenna D. S. Lehmann, Brian W. Goldman, Ian Dworkin, David M. Bryson, A. Wagner
Software Mentions: 4
Published: over 12 years ago

10.1002/ece3.4406

Interactions between two parasites of brown trout (Salmo trutta ): Consequences of preinfection
Cited by: 7
Author(s): Mikhail Gopko, Mridula Chowdhury, Jouni Taskinen
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6946

Genomic analysis of Asian honeybee populations in China reveals evolutionary relationships and adaptation to abiotic stress
Cited by: 6
Author(s): Peng Shi, Jun Zhou, Huali Song, Yujuan Wu, Lan Lan, Xiangyou Tang, Zhengang Ma, Charles R. Vossbrinck, Bettina Vossbrinck, Zeyang Zhou, Jianlong Xu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: over 6 years ago

10.1002/ajh.25994

The prognostic value of additional copies of <scp>1q21</scp> in multiple myeloma depends on the primary genetic event
Cited by: 20
Author(s): Maurus Locher, Michael Steurer, Emina Jukic, Markus A. Keller, Friedrich Fresser, Carmen Ruepp, Ewald Wöll, Irmgard Verdorfer, Günther Gastl, Wolfgang Willenbacher, Roman Weger, David Nachbaur, Dominik Wolf, Eberhard Gunsilius, Johannes Zschocke, Normann Steiner
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-86821-y

Prediction of single-cell mechanisms for disease progression in hypertrophic remodelling by a trans-omics approach
Cited by: 3
Author(s): Momoko Hamano, Seitaro Nomura, Midori Iida, Issei Komuro, Yoshihiro Yamanishi
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-87588-y

In situ novel environment assay reveals acoustic exploration as a repeatable behavioral response in migratory bats
Cited by: 3
Author(s): Theresa Schabacker, Oliver Lindecke, Sofia Rizzi, Lara Marggraf, Gunārs Pētersons, Christian C. Voigt, Lysanne Snijders
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.6989

Effects of maternal genotypic identity and genetic diversity of the red mangrove Rhizophora mangle on associated soil bacterial communities: A field‐based experiment
Cited by: 9
Author(s): Hayley Craig, John Paul Kennedy, Donna J. Devlin, Richard D. Bardgett, Jennifer K. Rowntree
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-87069-2

White matter abnormalities in adults with bipolar disorder type-II and unipolar depression
Cited by: 6
Author(s): Anna Manelis, Adriane M. Soehner, Yaroslav Halchenko, Skye Satz, Rachel Ragozzino, Mora M. Lucero, Holly A. Swartz, Mary L. Phillips, Amelia Versace
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.2794

Synergistic effects of floral phytochemicals against a bumble bee parasite
Cited by: 46
Author(s): Evan C. Palmer‐Young, Ben M. Sadd, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: over 9 years ago

10.1186/s12879-020-05600-8

Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10010011

Mechanistic Insight of Allantoin in Protecting Tomato Plants Against Ultraviolet C Stress
Cited by: 23
Author(s): Mona F. A. Dawood, Md. Tahjib‐Ul‐Arif, Abdullah Al Mamun Sohag, Arafat Abdel Hamed Abdel Latef, Marwa M. Ragaey
Software Mentions: 4
Published: over 5 years ago

10.1038/s41388-019-1047-4

Targeting chemoresistant colorectal cancer via systemic administration of a BMP7 variant
Cited by: 23
Author(s): Veronica Veschi, Laura Rosa Mangiapane, Antonietta Nicotra, Simone Di Franco, Emanuela Scavo, Tiziana Apuzzo, Davide Stefano Sardina, Micol Eleonora Fiori, Antonina Benfante, Maria Luisa Colorito, Gianfranco Cocorullo, Felice Giuliante, Calogero Cipolla, Giuseppe Pistone, Maria Rita Bongiorno, Aroldo Rizzo, Courtney M. Tate, Xiaohua Wu, Scott W. Rowlinson, Louis F. Stancato, Matilde Todaro, Ruggero De Maria, Giorgio Stassi
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4837

The integrative effects of behavior and morphology on amphibian movement
Cited by: 10
Author(s): Evan M. Bredeweg, Anita T. Morzillo, Lindsey L. Thurman, Tiffany S. Garcia
Software Mentions: 4
Published: over 7 years ago

10.3390/foods10071572

Characterization of Nutritional Quality Traits of a Common Bean Germplasm Collection
Cited by: 15
Author(s): Ester Murube, Romina Beleggia, Deborah Pacetti, Ancuta Nartea, Giulia Frascarelli, Giovanna Lanzavecchia, Elisa Bellucci, Laura Nanni, Tania Gioia, Ugo Marciello, Stefania Esposito, Giacomo Foresi, Giuseppina Logozzo, Giuseppe Natale Frega, Elena Bitocchi, Roberto Papa
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250665

Application of machine learning and genetic optimization algorithms for modeling and optimizing soybean yield using its component traits
Cited by: 28
Author(s): Mohsen Yoosefzadeh-Najafabadi, Dan Tulpan, Milad Eskandari
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008076

Heterogeneous pathway activation and drug response modelled in colorectal-tumor-derived 3D cultures
Cited by: 57
Author(s): Dirk Schumacher, Geoffroy Andrieux, Karsten Boehnke, Marlen Keil, Alessandra Silvestri, Maxine Silvestrov, Ulrich Keilholz, Johannes Haybaeck, Gerrit Erdmann, Christoph Sachse, Markus F. Templin, Jens Hoffmann, Melanie Boerries, Reinhold Schäfer, Christian Regenbrecht
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-86504-8

Identification and external validation of a prognostic signature associated with DNA repair genes in gastric cancer
Cited by: 5
Author(s): Shimin Chen, Wenbo Liu, Haojun Yu
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0222486

Are dialects socially learned in marmoset monkeys? Evidence from translocation experiments
Cited by: 20
Author(s): Yvonne Zürcher, Erik P. Willems, Judith M. Burkart
Software Mentions: 4
Published: over 6 years ago

10.3390/foods10071670

Chemical Elements and the Quality of Mānuka (Leptospermum scoparium) Honey
Cited by: 7
Author(s): Alexandra Meister, María Jesús Gutiérrez-Ginés, Aydin Maxfield, Sally Gaw, Nicholas Dickinson, Jacqui Horswell, Brett Robinson
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/5550116

An Immune Checkpoint-Related Gene Signature for Predicting Survival of Pediatric Acute Myeloid Leukemia
Cited by: 17
Author(s): Feng Jiang, Xinyu Wang, Mingyan Wang, Yan Ping Mao, Xiaolin Miao, Chuyan Wu, Guoping Zhou
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-021-01082-1

Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
Cited by: 10
Author(s): David E. Wilkins, Xinzhao Tong, Marcus H. Y. Leung, Christopher E. Mason, Patrick K. H. Lee
Software Mentions: 4
Published: about 5 years ago

10.3390/foods8110534

A Comparison of Two Sensory Panels Trained with Different Feedback Calibration Range Specifications via Sensory Description of Five Beers
Cited by: 5
Author(s): Line Elgaard, Line Holler Mielby, Helene Hopfer, Derek V. Byrne
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph17072361

A Systematic Review and Meta-Analysis Investigating the Relationship between Exposures to Chemical and Non-Chemical Stressors during Prenatal Development and Childhood Externalizing Behaviors
Cited by: 6
Author(s): Frances M. Nilsen, Jessica J. Frank, Nicolle S. Tulve
Software Mentions: 4
Published: about 6 years ago

10.3389/fnagi.2017.00383

Hippocampal Transcriptomic Profiles: Subfield Vulnerability to Age and Cognitive Impairment
Cited by: 38
Author(s): Lara Ianov, Matt De Both, Monica K. Chawla, Asha Rani, Andrew Kennedy, Ignazio S. Piras, Jeremy J. Day, Ashley L. Siniard, Ashok Kumar, J. David Sweatt, Carol A. Barnes, Matthew J. Huentelman, Thomas C. Foster
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-84691-y

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress
Cited by: 12
Author(s): Renée L. Eriksen, Lillian K. Padgitt-Cobb, M. Shaun Townsend, Jimmy C. Henning
Software Mentions: 4
Published: over 5 years ago

10.1093/molbev/msaa328

Fast and Robust Identity-by-Descent Inference with the Templated Positional Burrows–Wheeler Transform
Cited by: 19
Author(s): William A. Freyman, Kimberly F. McManus, Suyash Shringarpure, Ethan M. Jewett, Katarzyna Bryc, Adam Auton
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212544

Genetic improvement of hip-extended scores in 3 breeds of guide dogs using estimated breeding values: Notable progress but more improvement is needed
Cited by: 16
Author(s): Eldin A. Leighton, Dolores M. Holle, Darryl N. Biery, Thomas P. Gregor, Mischa B. McDonald-Lynch, Mandy L. Wallace, Jennifer K. Reagan, Gail K. Smith
Software Mentions: 4
Published: over 7 years ago

10.3389/fnagi.2021.733388

Aging Increases Cross-Modal Distraction by Unexpected Sounds: Controlling for Response Speed
Cited by: 0
Author(s): Alicia Leiva, Pilar Andrés, Fabrice B. R. Parmentier
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12865-014-0040-5

Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
Cited by: 53
Author(s): Victor Greiff, Ulrike Menzel, Ulrike Haessler, Skylar C. Cook, Simon Friedensohn, Tarik A. Khan, Mark Pogson, Ina Hellmann, Sai T. Reddy
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-021-84126-8

Trumpet sounds emitted by male sperm whales in the Mediterranean Sea
Cited by: 4
Author(s): Daniela Silvia Pace, Caterina Lanfredi, Sabina Airoldi, Giancarlo Giacomini, Margherita Silvestri, Gianni Pavan, D. Ardizzone
Software Mentions: 4
Published: over 5 years ago

10.1186/s12865-020-00344-1

Identification of differentially expressed circulating exosomal lncRNAs in IgA nephropathy patients
Cited by: 17
Author(s): Na Guo, Qin Zhou, Xiang Huang, Jia-Kuo Yu, Qianqian Han, Baoting Nong, Yuanyan Xiong, Peifeng Liang, Jiajia Li, Min Feng, Jun Lv, Qiongqiong Yang
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-84173-1

Predictive values, uncertainty, and interpretation of serology tests for the novel coronavirus
Cited by: 19
Author(s): Naomi C. Brownstein, Yian Ann Chen
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-018-0537-x

Root exudates drive the soil-borne legacy of aboveground pathogen infection
Cited by: 294
Author(s): Jun Yuan, Jun Zhao, Teng Wen, Mingwen Zhao, Rong Li, Pim Goossens, Qiwei Huang, Yang Bai, Jorge M. Vivanco, George A. Kowalchuk, Roeland L. Berendsen
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.8486

Patterns of biodiversity response along a gradient of forest use in Eastern Amazonia, Brazil
Cited by: 7
Author(s): Sérgio Milheiras, Marcelino Carneiro Guedes, Fernando A. B. Silva, Perseu Silva Aparicio, Georgina M. Mace
Software Mentions: 4
Published: over 6 years ago

10.3389/fnbeh.2020.618180

PsyCoP – A Platform for Systematic Semi-Automated Behavioral and Cognitive Profiling Reveals Gene and Environment Dependent Impairments of Tcf4 Transgenic Mice Subjected to Social Defeat
Cited by: 8
Author(s): Paul Volkmann, Marius Stephan, Sven Krackow, Niels Rosendal Jensen, Moritz J. Rossner
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84774-w

Culture and differentiation of rabbit intestinal organoids and organoid-derived cell monolayers
Cited by: 8
Author(s): Egi Kardia, Michael Frese, Elena Smertina, Tanja Strive, Xi‐Lei Zeng, Mary K. Estes, Robyn N. Hall
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0085097

Bacterial Communities in Malagasy Soils with Differing Levels of Disturbance Affecting Botanical Diversity
Cited by: 7
Author(s): Leah C. Blasiak, Alex W. Schmidt, Honoré Andriamiarinoro, Temesgen Belayneh Mulaw, Rado Rasolomampianina, Wendy L. Applequist, Chris Birkinshaw, Félicitée Rejo-Fienena, Porter P. Lowry, Thomas M. Schmidt, Russell T. Hill
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-021-84886-3

Listener’s personality traits predict changes in pupil size during auditory language comprehension
Cited by: 6
Author(s): Isabell Hubert Lyall, Juhani Järvikivi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008385

Distinct genetic variation and heterogeneity of the Iranian population
Cited by: 30
Author(s): Zohreh Mehrjoo, Zohreh Fattahi, Maryam Beheshtian, Marzieh Mohseni, Hossein Poustchi, Fariba Ardalani, Khadijeh Jalalvand, Sanaz Arzhangi, Zahra Mohammadi, Shahrouz Khoshbakht, Farid Najafi, Pooneh Nikuei, Mohammad Haddadi, Elham Zohrehvand, Morteza Oladnabi, Akbar Mohammadzadeh, Mandana Hadi Jafari, Tara Akhtarkhavari, Ehsan Shamsi Gooshki, Ali-Akbar Haghdoost, Reza Najafipour, Lisa‐Marie Niestroj, Barbara Helwing, Yasmina Gossmann, Mohammad Reza Toliat, Reza Malekzadeh, Peter Nürnberg, Kimia Kahrizi, Hossein Najmabadi, Michael Nothnagel
Software Mentions: 4
Published: almost 7 years ago

10.3389/fbioe.2020.00266

Characterization of lncRNA-Associated ceRNA Network to Reveal Potential Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 8
Author(s): Yang Wang, Ruyi He, Lixin Ma
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.9326

Microbial community analysis in the gills of abalones suggested possible dominance of epsilonproteobacterium in Haliotis gigantea
Cited by: 2
Author(s): Yukino Mizutani, Tetsushi Mori, Taeko Miyazaki, Satoshi Fukuzaki, Reiji Tanaka
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-84308-4

Elucidating the genetics of grain yield and stress-resilience in bread wheat using a large-scale genome-wide association mapping study with 55,568 lines
Cited by: 11
Author(s): Philomin Juliana, Ravi P. Singh, Jesse Poland, Sandesh Shrestha, Julio Huerta‐Espino, Velu Govindan, Suchismita Mondal, Leonardo Crespo‐Herrera, Uttam Kumar, Arun Kumar Joshi, Thomas Payne, Pradeep Kumar Bhati, Vipin Tomar, Franjel Consolacion, Jaime Amador Campos Serna
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-020-07260-z

Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum
Cited by: 18
Author(s): Delong Wang, Xuke Lu, Xiugui Chen, Shuai Wang, Junjuan Wang, Lixue Guo, Zujun Yin, Quanjia Chen, Wuwei Ye
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84044-9

Identification of candidate repurposable drugs to combat COVID-19 using a signature-based approach
Cited by: 18
Author(s): Sinead M. O’Donovan, Ali Sajid Imami, Hunter M. Eby, Nicholas Henkel, Justin Creeden, Sophie Asah, Xiaolu Zhang, Xiaojun Wu, Rawan Alnafisah, R. Travis Taylor, James Reigle, Alexander W. Thorman, Behrouz Shamsaei, Jarek Meller, Robert E. McCullumsmith
Software Mentions: 4
Published: over 5 years ago

10.1007/s10071-020-01435-7

Object manufacture based on a memorized template: Goffin’s cockatoos attend to different model features
Cited by: 1
Author(s): I. B. Laumer, Sarah A. Jelbert, Alex H. Taylor, Theresa Rößler, Alice M. I. Auersperg
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83886-7

Using protein turnover to expand the applications of transcriptomics
Cited by: 2
Author(s): Marissa A. Smail, James Reigle, Robert E. McCullumsmith
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1002604

Gene Reactivation by 5-Aza-2′-Deoxycytidine–Induced Demethylation Requires SRCAP–Mediated H2A.Z Insertion to Establish Nucleosome Depleted Regions
Cited by: 52
Author(s): Xiaojing Yang, Houtan Noushmehr, Han Han, Claudia Andreu-Vieyra, Gangning Liang, Peter A. Jones
Software Mentions: 4
Published: over 14 years ago

10.3389/fbioe.2021.666582

nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates
Cited by: 6
Author(s): Carlos A. Contreras-Dávila, Johan Esveld, Cees J.N. Buisman, D.P.B.T.B. Strik
Software Mentions: 4
Published: about 5 years ago

10.1007/s10071-020-01345-8

Why do dogs look back at the human in an impossible task? Looking back behaviour may be over-interpreted
Cited by: 31
Author(s): Martina Lazzaroni, Sarah Marshall-Pescini, Helena Manzenreiter, Sarah Gosch, Lucy Přibilová, Larissa Darc, Jim McGetrick, Friederike Range
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2164-15-884

A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: over 12 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-83153-9

Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0007921

Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection
Cited by: 18
Author(s): Amin Addetia, Lauren C. Tantalo, Michelle J. Lin, Hong Xie, Meei‐Li Huang, Christina M. Marra, Alexander L. Greninger
Software Mentions: 4
Published: about 6 years ago

10.3389/fcvm.2018.00186

Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation
Cited by: 15
Author(s): Douglas J. Chapski, Manuel Rosa‐Garrido, Haiyang Nan, Frank Alber, Thomas M. Vondriska
Software Mentions: 4
Published: over 7 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441