cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1016/j.mcpro.2021.100065

Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits
Cited by: 5
Author(s): F. Schober, Ilian Atanassov, David Moore, Javier Calvo‐Garrido, Marco F. Moedas, Anna Wedell, Christoph Freyer, Anna Wredenberg
Software Mentions: 4
Published: over 5 years ago

10.1074/mcp.M115.049205

Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula
Cited by: 37
Author(s): David Lyon, María Ángeles Castillejo, Vlora Mehmeti-Tershani, Christiana Staudinger, Christoph Kleemaier, Stefanie Wienkoop
Software Mentions: 4
Published: about 10 years ago

10.1074/mcp.RA119.001392

Cathepsin L Regulates Metabolic Networks Controlling Rapid Cell Growth and Proliferation
Cited by: 7
Author(s): Tommy Weiss-Sadan, Gal Itzhak, Farnusch Kaschani, Zhanru Yu, Mohamed Mahameed, Adi Anaki, Yael Ben-Nun, Emmanuelle Merquiol, Boaz Tirosh, Benedikt M. Kessler, Markus Kaiser, Galia Blum
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.5293

Variation in the leaf and root microbiome of sugar maple (Acer saccharum) at an elevational range limit
Cited by: 37
Author(s): Jessica G. Wallace, Isabelle Laforest‐Lapointe, Steven W. Kembel
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.4088

PlantCV v2: Image analysis software for high-throughput plant phenotyping
Cited by: 191
Author(s): Malia Gehan, Arash Abbasi, Jeffrey C. Berry, Steven T. Callen, Leonardo Chavez, Andrew N. Doust, Max Feldman, Kerrigan B. Gilbert, John G. Hodge, J. Steen Hoyer, Andy Lin, Suxing Liu, César Lizárraga, Argelia Lorence, Michael D. Miller, Éric Platon, Monica Tessman, Tony Sax
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.10140

Spatial modeling could not differentiate early SARS-CoV-2 cases from the distribution of humans on the basis of climate in the United States
Cited by: 6
Author(s): Robert S. Harbert, Seth W. Cunningham, Michael Tessler
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.4512

Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial
Cited by: 16
Author(s): Sergio Nigenda‐Morales, Ryan J. Harrigan, Robert K. Wayne
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.10572

Genomic diversity of Escherichia coli from healthy children in rural Gambia
Cited by: 7
Author(s): Ebenezer Foster-Nyarko, Nabil-Fareed Alikhan, Usman N. Ikumapayi, Golam Sarwar, Catherine Okoi, Peggy-Estelle Tientcheu, Marianne Defernez, Justin O’Grady, Martín Antonio, Mark J. Pallen
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.11948

Quantifying bite force in coexisting tayassuids and feral suids: a comparison between morphometric functional proxies and in vivo measurements
Cited by: 1
Author(s): Fernando Lencastre Sicuro, Luiz Flamarion B. Oliveira, Carla Deonísia Hendges, Carlos Fonseca
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.6377

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis
Cited by: 50
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.11956

Small-scale variation in a pristine montane cloud forest: evidence on high soil fungal diversity and biogeochemical heterogeneity
Cited by: 1
Author(s): Patricia Vélez, Yunuen Tapia-Torres, Felipe Garcı́a-Oliva, Jaime Gasca-Pineda
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8133

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity
Cited by: 19
Author(s): Lauren V. Carruthers, Moses Arinaitwe, Moses Adriko, Christina L. Faust, Edridah M. Tukahebwa, Lindsay J. Hall, Lisa Ranford-Cartwright, Poppy H. L. Lamberton
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.3394

SIX4 promotes metastasis via activation of the PI3K-AKT pathway in colorectal cancer
Cited by: 26
Author(s): Guodong Li, Fang Hu, Xuelai Luo, Jian Hu, Yongzeng Feng
Software Mentions: 4
Published: about 9 years ago

10.7717/peerj.10231

Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture
Cited by: 22
Author(s): John K. Pearman, Nigel Keeley, Susanna A. Wood, Olivier Laroche, Anastasija Zaiko, Georgia Thomson‐Laing, Laura Biessy, Javier Atalah, Xavier Pochon
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.8938

Diffusion tubes: a method for the mass culture of ctenophores and other pelagic marine invertebrates
Cited by: 11
Author(s): Wyatt L. Patry, MacKenzie M Bubel, Cypress Hansen, Thomas Knowles
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.5738

The relationship between social rank and spatial learning in pheasants, Phasianus colchicus: cause or consequence?
Cited by: 15
Author(s): Ellis J. G. Langley, Jayden O. van Horik, Mark Whiteside, Christine E. Beardsworth, Joah R. Madden
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.9883

Mayfly emergence production and body length response to hydrology in a tropical lowland stream
Cited by: 4
Author(s): Pablo E. Gutiérrez‐Fonseca, Alonso Ramírez
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.5583

Assessment of the bacterial community structure in shallow and deep sediments of the Perdido Fold Belt region in the Gulf of Mexico
Cited by: 22
Author(s): Ma. Fernanda Sánchez-Soto Jiménez, Daniel Cerqueda‐García, Jorge L. Montero-Muñoz, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.3766

The Plasmodium berghei RC strain is highly diverged and harbors putatively novel drug resistance variants
Cited by: 0
Author(s): Warangkhana Songsungthong, Supasak Kulawonganunchai, Alisa Wilantho, Sissades Tongsima, Pongpisid Koonyosying, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Philip Shaw
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.11421

nCov2019: an R package for studying the COVID-19 coronavirus pandemic
Cited by: 9
Author(s): Tianzhi Wu, Erqiang Hu, Xijin Ge, Yu Guo
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.2643

Seasonal regulation of herbivory and nutrient effects on macroalgal recruitment and succession in a Florida coral reef
Cited by: 16
Author(s): Alain Durán, Ligia Collado‐Vides, Deron E. Burkepile
Software Mentions: 4
Published: almost 10 years ago

10.7717/peerj.8541

Rhizosphere bacterial and fungal communities during the growth of Angelica sinensis seedlings cultivated in an Alpine uncultivated meadow soil
Cited by: 12
Author(s): An Zhigang, Fengjing Guo, Yuan Chen, Gang Bai, Zhengjun Chen
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.7844

Effects of research disturbance on nest survival in a mixed colony of waterbirds
Cited by: 4
Author(s): Matthieu Guillemain, Hugo Carré, Lisa Gili
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.5022

Relationship betweenAcropora milleporajuvenile fluorescence and composition of newly establishedSymbiodiniumassemblage
Cited by: 4
Author(s): Kate M. Quigley, Marie E. Strader, Mikhail V. Matz
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pntd.0004636

Zika Virus Outbreak in Rio de Janeiro, Brazil: Clinical Characterization, Epidemiological and Virological Aspects
Cited by: 239
Author(s): Patrícia Brasil, Guilherme Amaral Calvet, André Machado Siqueira, Mayumi Duarte Wakimoto, Patrícia Carvalho de Sequeira, Aline Araújo Nobre, Marcel de Souza Borges Quintana, Marco Cesar Lima de Mendonça, Otília Lupi, Rogério Valls de Souza, Carolina Romero, Heruza Einsfeld Zogbi, Clarisse da Silveira Bressan, Simone Sampaio Alves, Ricardo Lourenço‐de‐Oliveira, Rita Maria Ribeiro Nogueira, Marília Sá Carvalho, Ana María Bispo de Filippis, Thomas Jaenisch
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pntd.0009425

Profound downregulation of neural transcription factor Npas4 and Nr4a family in fetal mice neurons infected with Zika virus
Cited by: 3
Author(s): Sergio P. Alpuche-Lazcano, James Saliba, Vivian Vasconcelos Costa, Gabriel Henrique Campolina-Silva, Fernanda Martins Marim, Lucas S. Ribeiro, Volker Blank, Andrew J. Mouland, Mauro M. Teixeira, Anne Gatignol
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008407

Linking longitudinal and cross-sectional biomarker data to understand host-pathogen dynamics: Leptospira in California sea lions (Zalophus californianus) as a case study
Cited by: 9
Author(s): Katherine C. Prager, Michael Buhnerkempe, Denise J. Greig, Anthony J. Orr, Eric D. Jensen, Forrest M. Gomez, Renee L. Galloway, Qingzhong Wu, Frances M. D. Gulland, James O. Lloyd‐Smith
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0002880

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Cited by: 274
Author(s): Soo Ching Lee, Mei Tang, Yvonne A. L. Lim, Seow Huey Choy, Zachary Kurtz, Laura M. Cox, Uma Mahesh Gundra, Ilseung Cho, Richard Bonneau, Martin J. Blaser, Kek Heng Chua, P’ng Loke
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0179458

Concurrent development of facial identity and expression discrimination
Cited by: 6
Author(s): Kirsten A. Dalrymple, Matteo Visconti di Oleggio Castello, Jed T. Elison, M. Ida Gobbini
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0242008

Measuring adverse events following hip arthroplasty surgery using administrative data without relying on ICD-codes
Cited by: 5
Author(s): Martin Magnéli, Maria Unbeck, Cecilia Rogmark, Olof Sköldenberg, Max Gordon
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0199818

Divide and conquer! Data-mining tools and sequential multivariate analysis to search for diagnostic morphological characters within a plant polyploid complex (Veronica subsect. Pentasepalae, Plantaginaceae)
Cited by: 1
Author(s): Noemí López-González, Santiago Andrés‐Sánchez, Blanca M. Rojas‐Andrés, M. Montserrat Martínez‐Ortega
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0240706

Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius)
Cited by: 3
Author(s): Ethan A. Brem, Alyssa D. McNulty, William J. Israelsen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0250514

Insights into the microbial diversity and structure in a full-scale municipal wastewater treatment plant with particular regard to Archaea
Cited by: 8
Author(s): Grażyna Płaza, Łukasz Jałowiecki, Dominika Głowacka, Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228514

Innate immune gene expression in Acropora palmata is consistent despite variance in yearly disease events
Cited by: 12
Author(s): Benjamin Young, Xaymara M. Serrano, Stephanie M. Rosales, Margaret W. Miller, Dana E. Williams, Nikki Traylor-Knowles
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0237179

Upper extremity prosthetic selection influences loading of transhumeral osseointegrated systems
Cited by: 3
Author(s): Craig Taylor, Alex J. Drew, Yue Zhang, Yuqing Qiu, Kent N. Bachus, K. Bo Foreman, Heath B. Henninger
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0212544

Genetic improvement of hip-extended scores in 3 breeds of guide dogs using estimated breeding values: Notable progress but more improvement is needed
Cited by: 16
Author(s): Eldin A. Leighton, Dolores M. Holle, Darryl N. Biery, Thomas P. Gregor, Mischa B. McDonald-Lynch, Mandy L. Wallace, Jennifer K. Reagan, Gail K. Smith
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0085097

Bacterial Communities in Malagasy Soils with Differing Levels of Disturbance Affecting Botanical Diversity
Cited by: 7
Author(s): Leah C. Blasiak, Alex W. Schmidt, Honoré Andriamiarinoro, Temesgen Belayneh Mulaw, Rado Rasolomampianina, Wendy L. Applequist, Chris Birkinshaw, Félicitée Rejo-Fienena, Porter P. Lowry, Thomas M. Schmidt, Russell T. Hill
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0150402

Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
Cited by: 51
Author(s): Christof Bigler
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0253037

A meta-analysis of transcriptomic profiles of Huntington’s disease patients
Cited by: 14
Author(s): Manuel Seefelder, Stefan Kochanek
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0240037

Changes in root-associated fungal communities in Triticum aestivum ssp. spelta L. and Triticum aestivum ssp. vulgare L. under drought stress and in various soil processing
Cited by: 12
Author(s): Sylwia Salamon, Katarzyna Mikołajczak, Lidia Błaszczyk, Karolina Ratajczak, H. Sulewska
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0232372

Clinical feasibility of ultrafast intracranial vessel imaging with non-Cartesian spiral 3D time-of-flight MR angiography at 1.5T: An intra-individual comparison study
Cited by: 10
Author(s): Thomas Sartoretti, Elisabeth Sartoretti, Árpád Schwenk, Luuk van Smoorenburg, Manoj Mannil, André Euler, Anton S. Becker, Alex Alfieri, Arash Najafi, Christoph A. Binkert, Michael Wyss, Sabine Sartoretti‐Schefer
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0249540

Water sprinkling as a tool for heat abatement in farmed Iberian red deer: Effects on calf growth and behaviour
Cited by: 2
Author(s): F. Javier Pérez‐Barbería, I Arroyo-González, Andrés J. García, Martina Pérez Serrano, Laureano Gallego, Tomás Landete‐Castillejos
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255738

Adenomatous Polyposis Coli loss controls cell cycle regulators and response to paclitaxel in MDA-MB-157 metaplastic breast cancer cells
Cited by: 3
Author(s): Emily Astarita, Sara Maloney, Camden A. Hoover, Bronwyn J. Berkeley, Monica K. VanKlompenberg, T. Murlidharan Nair, Jenifer R. Prosperi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0201657

“In a tree by the brook, there’s a songbird who sings”: Woodlands in an agricultural matrix maintain functionality of a wintering bird community
Cited by: 5
Author(s): Biang La Nam Syiem, Varun R. Goswami, Divya Vasudev
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0185087

A novel molecular toolkit for rapid detection of the pathogen and primary vector of thousand cankers disease
Cited by: 20
Author(s): Emel Ören, William E. Klingeman, Romina Gazis, John K. Moulton, Paris Lambdin, Mark V. Coggeshall, Jiří Hulcr, Steven J. Seybold, Ðenita Hadziabdic
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0229873

Development of a methodology to make individual estimates of the precision of liquid chromatography-tandem mass spectrometry drug assay results for use in population pharmacokinetic modeling and the optimization of dosage regimens
Cited by: 7
Author(s): Gellért Balázs Karvaly, Michael Neely, K Kovács, István Vincze, Barna Vásárhelyi, Roger W. Jelliffe
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0251121

Melanocytes determine angiogenesis gene expression across human tissues
Cited by: 3
Author(s): Shirly Freilikhman, Marianna Halasi, Alal Eran, Irit Adini
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237741

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits
Cited by: 17
Author(s): Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, D. Kostova
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0060997

Principal Networks
Cited by: 8
Author(s): Jonathan D. Clayden, Michael Dayan, Chris A. Clark
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0236619

Enacting national social distancing policies corresponds with dramatic reduction in COVID19 infection rates
Cited by: 101
Author(s): Daniel J. McGrail, Jianli Dai, Kathleen M. McAndrews, Raghu Kalluri
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0240322

Evaluating socio-economic and conservation impacts of management: A case study of time-area closures on Georges Bank
Cited by: 5
Author(s): David M. Keith, Jessica A. Sameoto, Freya Keyser, Christine A. Ward-Paige
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0234860

BiomMiner: An advanced exploratory microbiome analysis and visualization pipeline
Cited by: 18
Author(s): Amirhossein Shamsaddini, Kimia Dadkhah, Patrick M. Gillevet
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0186973

Monthly variations in aneurysmal subarachnoid hemorrhage incidence and mortality: Correlation with weather and pollution
Cited by: 11
Author(s): Myung Hoon Han, Jinhee Kim, Kyu Sun Choi, Choong Hyun Kim, Jae Min Kim, Jin Hwan Cheong, Hyeong Joong Yi, Seon Heui Lee
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0252628

Serological profiles of pan-coronavirus-specific responses in COVID-19 patients using a multiplexed electro-chemiluminescence-based testing platform
Cited by: 10
Author(s): Sidhartha Chaudhury, Jack Hutter, Jessica Bolton, Shilpa Hakre, Evelyn Mose, Amy I Wooten, William O'Connell, Joseph Hudak, Shelly J. Krebs, Janice M. Darden, Jason A. Regules, Clinton K. Murray, Kayvon Modjarrad, Paul T. Scott, Sheila A. Peel, Elke S. Bergmann‐Leitner
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0252026

Differential association between inflammatory cytokines and multiorgan dysfunction in COVID-19 patients with obesity
Cited by: 8
Author(s): Marie-Agnès Dragon-Durey, Xiaoyi Chen, Amos Kirilovsky, Nadine Benhamouda, Carine El Sissy, Jules Russick, Etienne Charpentier, Yannick Binois, Florence Marliot, Maxime Meylan, Clémence Granier, Hélène Péré, Antonin Saldmann, Bastien Rance, Anne Sophie Jannot, Stéphanie Baron, M. Chebbi, Antoine Fayol, Nathalie Josseaume, Claire Rives‐Lange, Pierre‐Louis Tharaux, Bernard Cholley, Jean‐Luc Diehl, Jean‐Benoît Arlet, Michel Azizi, Alexandre Karras, Sébastien Czernichow, David Smadja, Jean‐Sébastien Hulot, Isabelle Cremer, Éric Tartour, Élie Mousseaux, Franck Pagès
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0172423

Generalist dispersers promote germination of an alien fleshy-fruited tree invading natural grasslands
Cited by: 14
Author(s): Martín Raúl Amodeo, María Belén Vázquez, Sergio Martín Zalba
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0256048

Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet
Cited by: 14
Author(s): P. K. Malik, Shraddha Trivedi, A. Mohapatra, Atul P. Kolte, Veerasamy Sejian, Raghavendra Bhatta, Husna Abdul Rahman
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0257829

The level of postoperative care influences mortality prediction by the POSPOM score: A retrospective cohort analysis
Cited by: 4
Author(s): Jan Menzenbach, Yannik C. Layer, Yonah L. Layer, Andreas Mayr, Mark Coburn, Maria Wittmann, Tobias Hilbert
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0251820

Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III
Cited by: 5
Author(s): Cora Chalar, Graciela Clivio, Jimena Montagne, Alicia Costábile, Analı́a Lima, Nicolás Papa, Nora Berois, María José Arezo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0219135

The menu varies with metabarcoding practices: A case study with the bat Plecotus auritus
Cited by: 28
Author(s): Tommy Andriollo, François Gillet, Johan Michaux, Manuel Rüedi
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0033575

Genetic Dissection of Acute Ethanol Responsive Gene Networks in Prefrontal Cortex: Functional and Mechanistic Implications
Cited by: 78
Author(s): Aaron R. Wolen, Charles Phillips, Michael A. Langston, Alex H. Putman, Paul J. Vorster, Nathan A. Bruce, Timothy P. York, Robert W. Williams, Michael F. Miles
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0193752

Diversity of terrestrial mammal seed dispersers along a lowland Amazon forest regrowth gradient
Cited by: 16
Author(s): Alexander Roldán Arévalo-Sandi, Paulo Estefano Dineli Bobrowiec, Victor Juan Ulises Rodriguez Chuma, D. Ryan Norris
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0236548

Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe
Cited by: 16
Author(s): Davide Delpiano, Thorsten Uthmeier
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0241374

The dark ventral patch: A bimodal flexible trait related to male competition in red deer
Cited by: 5
Author(s): Juan Carranza, Eva de la Peña, Concha Mateos Martín, Javier Pérez‐González, Susana Alarcos, Jerónimo Torres-Porras, Juliana Valencia, Cristina B. Sánchez-Prieto, Leticia Castillo
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0045007

Genetic Diversity and Ecosystem Functioning in the Face of Multiple Stressors
Cited by: 44
Author(s): Fabian Roger, Anna Godhe, Lars Gamfeldt
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.pone.0146385

Assessment of the Potential Impacts of Wheat Plant Traits across Environments by Combining Crop Modeling and Global Sensitivity Analysis
Cited by: 66
Author(s): Pierre Casadebaig, Bangyou Zheng, Scott C. Chapman, Neil Huth, Robert Faivre, Karine Chenu
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0066798

An Experimental Test of Competition among Mice, Chipmunks, and Squirrels in Deciduous Forest Fragments
Cited by: 17
Author(s): Jesse L. Brunner, Shannon Duerr, Felicia Keesing, Mary Killilea, Holly B. Vuong, Richard S. Ostfeld
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0220384

Dehydration constrains thermoregulation and space use in lizards
Cited by: 34
Author(s): Marco Sannolo, Miguel Á. Carretero
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0251502

“Know your epidemic, know your response”: Epidemiological assessment of the substance use disorder crisis in the United States
Cited by: 8
Author(s): Andrés Hernández, Minxuan Lan, Neil J. MacKinnon, Adam J. Branscum, Diego F. Cuadros
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0248213

De novo identification and targeted sequencing of SSRs efficiently fingerprints Sorghum bicolor sub-population identity
Cited by: 2
Author(s): John P. Baggett, Richard L. Tillett, Elizabeth A. Cooper, Melinda K. Yerka
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0243748

Diversity and functional prediction of microbial communities involved in the first aerobic bioreactor of coking wastewater treatment system
Cited by: 14
Author(s): Jinsi Deng, Baoshan Zhang, Junting Xie, Haixia Wu, Zemin Li, Guanglei Qiu, Chaohai Wei, Shuang Zhu
Software Mentions: 4
Published: over 5 years ago

10.1038/celldisc.2017.13

Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation
Cited by: 7
Author(s): Miriam Landfors, Jostein Johansen, Jan Magnus Aronsen, Cathrine Broberg Vågbø, Louis C. Doré, Chuan He, Ivar Sjaastad, Pål Sætrom, Péter Fedorcsák, John Arne Dahl, Håvard Aanes, Markus Fußer, Arne Klungland
Software Mentions: 4
Published: over 9 years ago

10.1111/cpr.12885

NUP98‐HOXA10hd fusion protein sustains multi‐lineage haematopoiesis of lineage‐committed progenitors in transplant setting
Cited by: 2
Author(s): Yong Dong, Kaitao Wang, Qitong Weng, Tongjie Wang, Pingwei Zhou, Xiaofei Liu, Geng Yang, Lijuan Liu, Hongling Wu, Jinyong Wang, Juan Du
Software Mentions: 4
Published: about 6 years ago

10.1016/j.celrep.2017.08.010

Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells
Cited by: 92
Author(s): Theodoros I. Roumeliotis, Steven P. Williams, Emanuel Gonçalvès, Clara Alsinet, Martín Del Castillo Velasco-Herrera, Nanne Aben, Fatemeh Zamanzad Ghavidel, Magali Michaut, Michaël Schubert, Stacey Price, James C. Wright, Lu Yu, Meizhu Yang, Rodrigo Dienstmann, Justin Guinney, Pedro Beltrão, Alvis Brāzma, Mercedes Pardo, Oliver Stegle, David J. Adams, Lodewyk Wessels, Julio Sáez-Rodríguez, Ultan McDermott, Jyoti S. Choudhary
Software Mentions: 4
Published: about 9 years ago

10.1016/j.celrep.2021.108860

COX2 regulates senescence secretome composition and senescence surveillance through PGE2
Cited by: 30
Author(s): S. Goncalves, Kai Yin, Yoko Itō, Adelyne Chan, Ioana Olan, Sarah Gough, Liam Cassidy, Eva M. Serrao, Stephen Smith, Andrew Young, Masashi Narita, Matthew Hoare
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2020.02.021

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome
Cited by: 49
Author(s): Michael R. Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A. Sanford, Livia S. Zaramela, Shadi Khalil, A. Butcher, Karsten Zengler, Alexander R. Horswill, Christopher L. Dupont, Alain Hovnanian, Richard L. Gallo
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.12.034

Mouse Ovarian Cancer Models Recapitulate the Human Tumor Microenvironment and Patient Response to Treatment
Cited by: 56
Author(s): Eleni Maniati, Chiara Berlato, Ganga Gopinathan, Owen Heath, Panoraia Kotantaki, Anissa Lakhani, Jacqueline McDermott, Colin Pegrum, Robin Delaine-Smith, Oliver M.T. Pearce, Priyanka Hirani, Joash D. Joy, Ludmila Szabova, Ruth Perets, Owen J. Sansom, Ronny Drapkin, Peter J. Bailey, Frances R. Balkwill
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.12.049

Trypanosoma brucei ATR Links DNA Damage Signaling during Antigenic Variation with Regulation of RNA Polymerase I-Transcribed Surface Antigens
Cited by: 21
Author(s): Jennifer Ann Black, Kathryn Crouch, Leandro Lemgruber, Craig Lapsley, Nicholas J. Dickens, Luíz Ricardo Orsini Tosi, Jeremy C. Mottram, Richard McCulloch
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.11.093

Dysregulation of RNA Splicing in Tauopathies
Cited by: 49
Author(s): Daniel J. Apicco, Cheng Zhang, Brandon F. Maziuk, Lulu Jiang, Heather Ballance, Samantha Boudeau, Choong Yong Ung, Hu Li, Benjamin Wolozin
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2020.107857

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation
Cited by: 65
Author(s): Tomas Castro‐Dopico, Aaron Fleming, Thomas W. Dennison, John R. Ferdinand, Katherine Harcourt, Benjamin J Stewart, M Zaeem Cader, Zewen Kelvin Tuong, Chenzhi Jing, Laurence S.C. Lok, Rebeccah J. Mathews, Anaïs Portet, Arthur Kaser, Simon Clare, Menna R. Clatworthy
Software Mentions: 4
Published: about 6 years ago

10.1038/s41422-020-00465-7

The m6A methylome of SARS-CoV-2 in host cells
Cited by: 87
Author(s): June Liu, Yixin Xu, Kai Li, Qing Ye, Hang Zhou, Hai Sun, Xiaoyu Li, Yu Liu, Yong Qiang Deng, Rui Ting Li, Miao Cheng, Bo He, Jia Zhou, Xiao Feng Li, Aiping Wu, Chengqi Yi, Qi Cheng
Software Mentions: 4
Published: over 5 years ago

10.1038/s41422-019-0251-7

Guiding T lymphopoiesis from pluripotent stem cells by defined transcription factors
Cited by: 39
Author(s): Rong Guo, Fang Hu, Qitong Weng, Chen Lv, Hongling Wu, Lijuan Liu, Zongcheng Li, Yang Zeng, Zhijie Bai, Mengyun Zhang, Yuting Liu, Xiaofei Liu, Chengxiang Xia, Tongjie Wang, Pingwei Zhou, Kaitao Wang, Yong Dong, Yuxuan Luo, Xiangzhong Zhang, Yuxian Guan, Geng Yang, Juan Du, Yangqiu Li, Yu Lan, Jiekai Chen, Bing Liu, Jinyong Wang
Software Mentions: 4
Published: almost 7 years ago

10.3390/cells9020387

Separated Siamese Twins: Intronic Small Nucleolar RNAs and Matched Host Genes May be Altered in Conjunction or Separately in Multiple Cancer Types
Cited by: 7
Author(s): Marianna Penzo, Rosanna Clima, Davide Treré, Lorenzo Montanaro
Software Mentions: 4
Published: over 6 years ago

10.3390/cells10051163

Anthracyclins Increase PUFAs: Potential Implications in ER Stress and Cell Death
Cited by: 9
Author(s): David Balgoma, Fredrik Kullenberg, Carlemi Calitz, Maria Kopsida, Femke Heindryckx, Hans Lennernäs, Mikael Hedeland
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9102320

Single Cell ADNP Predictive of Human Muscle Disorders: Mouse Knockdown Results in Muscle Wasting
Cited by: 7
Author(s): Oxana Kapitansky, Gidon Karmon, Shlomo Sragovich, Adva Hadar, Meishar Shahoha, Iman Jaljuli, Lior Bikovski, Eliezer Giladi, Róbert Pálovics, Tal Iram, Illana Gozes
Software Mentions: 4
Published: almost 6 years ago

10.3390/cells9061523

Potential Prognostic Role of SPARC Methylation in Non-Small-Cell Lung Cancer
Cited by: 9
Author(s): Federico Pio Fabrizio, Angelo Sparaneo, Andrea Fontana, Tommaso Mazza, Paolo Graziano, Angela Pantalone, Paola Parente, Flavia Centra, Natalizia Orlando, Domenico Trombetta, Annamaria la Torre, Gian Maria Ferretti, Marco Taurchini, Concetta Martina Di Micco, Evaristo Maiello, Vito Michele Fazio, Antonio Rossi, Lucia Anna Muscarella
Software Mentions: 4
Published: about 6 years ago

10.3390/cells10092279

Apical Sperm Hook Morphology Is Linked to Sperm Swimming Performance and Sperm Aggregation in Peromyscus Mice
Cited by: 10
Author(s): Kristin A. Hook, Lauren M Wilke, Heidi S. Fisher
Software Mentions: 4
Published: almost 5 years ago

10.3390/cells10010185

Beneficial Effects of Akkermansia muciniphila Are Not Associated with Major Changes in the Circulating Endocannabinoidome but Linked to Higher Mono-Palmitoyl-Glycerol Levels as New PPARα Agonists
Cited by: 39
Author(s): Clara Depommier, Rosa Maria Vitale, Fabio Arturo Iannotti, Cristoforo Silvestri, Nicolas Flamand, Céline Druart, Amandine Everard, Rudy Pelicaen, Dominique Maiter, Jean‐Paul Thissen, Audrey Loumaye, Michel P. Hermans, Nathalie M. Delzenne, Willem M. de Vos, Vincenzo Di Marzo, Patrice D. Cani
Software Mentions: 4
Published: over 5 years ago

10.3390/cells10051091

Vascular Calcification Progression Modulates the Risk Associated with Vascular Calcification Burden in Incident to Dialysis Patients
Cited by: 4
Author(s): Antonio Bellasi, Luca Di Lullo, Domenico Russo, Roberto Ciarcia, Michele Magnocavallo, Carlo Lavalle, Carlo Ratti, Mario Cozzolino, Biagio Di Iorio
Software Mentions: 4
Published: over 5 years ago

10.1039/c9sc04090k

Is there a gender gap in chemical sciences scholarly communication?
Cited by: 34
Author(s): Aileen Day, Peter Corbett, J. Boyle
Software Mentions: 4
Published: over 6 years ago

10.3390/diagnostics11091622

Alteration in Nasopharyngeal Microbiota Profile in Aged Patients with COVID-19
Cited by: 9
Author(s): Ravindra Kolhe, Nikhil Sahajpal, Sagar Vyavahare, Akhilesh S. Dhanani, Satish Adusumilli, Sudha Ananth, Ashis Mondal, Gregory Taylor Patterson, Sandeep Kumar, Amyn M. Rojiani, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/5598824

A Nomogram Prediction of Length of Hospital Stay in Patients with COVID-19 Pneumonia: A Retrospective Cohort Study
Cited by: 12
Author(s): Kang Li, Chi Zhang, Ling Qin, Chengxi Zang, Ang Li, Jianping Sun, Yan Zhao, Yingmei Feng, Yonghong Zhang
Software Mentions: 4
Published: about 5 years ago

10.1016/j.ebiom.2019.11.046

Prioritization of novel ADPKD drug candidates from disease-stage specific gene expression profiles
Cited by: 15
Author(s): Tareq B. Malas, Wouter N. Leonhard, Hester Bange, Zoraide Granchi, Kristina Hettne, Gerard J. P. van Westen, Leo Price, Peter A C ‘t Hoen, Dorien J.M. Peters
Software Mentions: 4
Published: over 6 years ago

10.1016/j.ebiom.2021.103264

Hyperinsulinemia and insulin resistance in the obese may develop as part of a homeostatic response to elevated free fatty acids: A mechanistic case-control and a population-based cohort study
Cited by: 40
Author(s): Emanuel Fryk, Josefin Olausson, Karin Mossberg, Lena Strindberg, Martin Schmelz, Helén Brogren, Li‐Ming Gan, Silvano Piazza, Alessandro Provenzani, Barbara Becattini, Lars Lind, Giovanni Solinas, Per‐Anders Jansson
Software Mentions: 4
Published: over 5 years ago

10.1016/j.eclinm.2021.101101

Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
Cited by: 26
Author(s): Marycelin Baba, Molalegne Bitew, Joseph Fokam, Eric Agola Lelo, A Ahidjo, Kominist Asmamaw, Grâce Beloumou, Wallace Bulimo, Emanuele Buratti, Collins Chenwi, Hailu Dadi, Pierlanfranco D’Agaro, Laura De Conti, Nadine Fainguem, Galadima Gadzama, Paolo Maiuri, Janet Majanja, Wadegu Meshack, Alexis Ndjolo, Céline Nguefeu Nkenfou, Bamidele Soji Oderinde, Silvanos Opanda, Ludovica Segat, Cristiana Stuani, Samwel L. Symekher, Désiré Takou, Kassahun Tesfaye, Gianluca Triolo, Keyru Tuki, Serena Zacchigna, Alessandro Marcello
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13550-017-0318-8

Gut microbiota and physiologic bowel 18F-FDG uptake
Cited by: 16
Author(s): Ji Yeon Kang, Han Na Kim, Yoosoo Chang, Yeojun Yun, Seungho Ryu, Hocheol Shin, Hyung Lae Kim
Software Mentions: 4
Published: almost 9 years ago

10.15252/embj.201899559

Phosphoproteomic screening identifies physiological substrates of the <scp>CDKL</scp> 5 kinase
Cited by: 52
Author(s): Iván Muñoz, Michael Morgan, Julien Peltier, Florian Weiland, Mateusz Gregorczyk, Fiona Brown, Thomas Macartney, Rachel Toth, Matthias Trost, John Rouse
Software Mentions: 4
Published: almost 8 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

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