cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.7717/peerj.5364

Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
Cited by: 218
Author(s): Jacob T. Nearing, Gavin M. Douglas, A. Comeau, Morgan G. I. Langille
Software Mentions: 4
Published: about 8 years ago

10.1186/s40168-020-00835-8

Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima
Cited by: 21
Author(s): Isis Guibert, Gaël Lecellier, Gergely Torda, Xavier Pochon, Véronique Berteaux‐Lecellier
Software Mentions: 4
Published: over 6 years ago

10.3390/nu12040999

Effects of Shift Work on the Eating Behavior of Police Officers on Patrol
Cited by: 38
Author(s): Anastasi Kosmadopoulos, Laura Kervezee, Philippe Boudreau, Fernando Gonzales-Aste, Nina Vujović, Frank A.J.L. Scheer, Diane B. Boivin
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-6766-y

Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian
Cited by: 9
Author(s): Whitney B. Leach, Adam M. Reitzel
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-42570-7

Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle
Cited by: 22
Author(s): Shino Tanaka, Mehmet Dayı, Y. Maeda, Isheng Jason Tsai, Ryusei Tanaka, Mark W. Bligh, Yuko Takeuchi-Kaneko, Kenji Fukuda, Natsumi Kanzaki, Taisei Kikuchi
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-020-07141-5

Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii
Cited by: 9
Author(s): Peter M. Henry, Sukhwinder Kaur, Quyen Anh Tran Pham, Radwan Barakat, Samuel Brinker, Hannah Haensel, Oleg Daugovish, Lynn Epstein
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-95739-4

Assessing effectiveness of exclusion fences in protecting threatened plants
Cited by: 6
Author(s): Juan Lorite, Carlos Salazar-Mendías, Roza Pawlak, Eva M. Cañadas
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.01006

Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence
Cited by: 7
Author(s): Beatriz Beamud, María Alma Bracho, Fernando González‐Candelas
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42692-y

Risks of hydroclimatic regime shifts across the western United States
Cited by: 2
Author(s): Subhrendu Gangopadhyay, Gregory J. McCabe, Gregory T. Pederson, Jessica Martin, Jeremy S. Littell
Software Mentions: 4
Published: over 7 years ago

10.1017/S0950268820001247

The basic reproduction number and prediction of the epidemic size of the novel coronavirus (COVID-19) in Shahroud, Iran
Cited by: 17
Author(s): Ahmad Khosravi, Reza Chaman, Marzieh Rohani-Rasaf, Fariba Zare, Shiva Mehravaran, Mohammad Hassan Emamian
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.720513

DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data
Cited by: 8
Author(s): Daniel Loos, Lu Zhang, Christine Beemelmanns, Oliver Kurzai, Gianni Panagiotou
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2021.617151

Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy Season
Cited by: 19
Author(s): Osiris Díaz-Torres, José de Anda, Ofelia Yadira Lugo-Melchor, Adriana Pacheco, Danielle A. Orozco-Nunnelly, Harvey Shear, Carolina Senés‐Guerrero, Misael Sebastian Gradilla‐Hernández
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22042006

Transcriptome Analysis Reveals HgCl2 Induces Apoptotic Cell Death in Human Lung Carcinoma H1299 Cells through Caspase-3-Independent Pathway
Cited by: 2
Author(s): Mi Jin Kim, Jin‐Hong Park, Jin-Ho Kim, Jiyoung Kim, Mi-Jin An, Geun-Seup Shin, Hyun-Min Lee, Chulhong Kim, Jung-Woong Kim
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-32327-z

The allergic response mediated by fire ant venom proteins
Cited by: 13
Author(s): Daniel Zamith-Miranda, Eduardo Gonçalves Paterson Fox, Ana Paula Teixeira Monteiro, Diogo Gama, Luiz E. Poublan, Almair Ferreira de Araújo, Maria Fernanda Carvalho Araujo, Geórgia C. Atella, Ednildo A. Machado, Bruno L. Diaz
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.01636

Evidence of Vent-Adaptation in Sponges Living at the Periphery of Hydrothermal Vent Environments: Ecological and Evolutionary Implications
Cited by: 12
Author(s): Magdalena N. Georgieva, Sergi Taboada, Ana Riesgo, Cristina Díez‐Vives, Fabio C. De Leo, Rachel M. Jeffreys, Jonathan T. Copley, Crispin T. S. Little, Pilar Ríos, Javier Cristobo, Jon Thomassen Hestetun, Adrian G. Glover
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-32904-2

Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.)
Cited by: 33
Author(s): Samuel David Gamboa-Tuz, Alejandro Pereira-Santana, Jesús Alejandro Zamora‐Briseño, Enrique Castaño, Francisco Espadas-Gil, Jorge Tonatiuh Ayala-Sumuano, Miguel A. Keb-Llanes, Lorenzo Felipe Sánchez Teyer, Luis Carlos Rodríguez-Zapata
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-95544-z

Seasonal and geographic variation in packed cell volume and selected serum chemistry of platypuses
Cited by: 0
Author(s): J.W.B. Stewart, Gilad Bino, Tahneal Hawke, Richard T. Kingsford
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-33116-4

Cholesterol is Inefficiently Converted to Cholesteryl Esters in the Blood of Cardiovascular Disease Patients
Cited by: 42
Author(s): Mathias J. Gerl, Winchil L.C. Vaz, Neuza Domingues, Christian Klose, Michał A. Surma, Júlio L. Sampaio, Jorge Almeida, G Rodrigues, Pedro Araújo-Gonçalves, Jorge Ferreira, Cláudia Borbinha, João Pedro Marto, Miguel Viana-Baptista, Kai Simons, Otília V. Vieira
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-32930-0

Social and nutritional factors shape larval aggregation, foraging, and body mass in a polyphagous fly
Cited by: 17
Author(s): Juliano Morimoto, Binh Nguyen, Shabnam Tarahi Tabrizi, Fleur Ponton, Phillip W. Taylor
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph17031111

Short-Term Associations of Fine Particulate Matter and Synoptic Weather Types with Cardiovascular Mortality: An Ecological Time-Series Study in Shanghai, China
Cited by: 11
Author(s): Tian Qing, Mei Li, Scott Montgomery, Bo Fang, Chunfang Wang, Tian Xia, Yang Cao
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01242

Prokaryotic Response to Phytodetritus-Derived Organic Material in Epi- and Mesopelagic Antarctic Waters
Cited by: 6
Author(s): Vincenzo Manna, Francesca Malfatti, Elisa Banchi, Federica Cerino, Fabio De Pascale, Annalisa Franzo, Riccardo Schiavon, Alessandro Vezzi, Paola Del Negro, Mauro Celussi
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-42827-1

Contrasting latitudinal patterns in phylogenetic diversity between woody and herbaceous communities
Cited by: 23
Author(s): Jhonny Capichoni Massante, Lars Götzenberger, Krista Takkis, Tiit Hallikma, Ants Kaasik, Lauri Laanisto, Michael J. Hutchings, Pille Gerhold
Software Mentions: 4
Published: over 7 years ago

10.3390/genes11030345

Arabidopsis thaliana MLK3, a Plant-Specific Casein Kinase 1, Negatively Regulates Flowering and Phosphorylates Histone H3 In Vitro
Cited by: 12
Author(s): Junmei Kang, Huiting Cui, Shangang Jia, Wenwen Liu, Renjie Yu, Zhihai Wu, Zhen Wang
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22041811

Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
Cited by: 15
Author(s): Liina Kinkar, Robin B. Gasser, Bonnie L. Webster, David Rollinson, D. Timothy J. Littlewood, Bill C.H. Chang, Andreas J. Stroehlein, Pasi K. Korhonen, Neil D. Young
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12071778

Potential Added Value of PET/CT Radiomics for Survival Prognostication beyond AJCC 8th Edition Staging in Oropharyngeal Squamous Cell Carcinoma
Cited by: 32
Author(s): Stefan P. Haider, Tal Zeevi, Philipp Baumeister, Christoph Reichel, Kariem Sharaf, Reza Forghani, Benjamin H. Kann, Benjamin L. Judson, Manju L. Prasad, Barbara Burtness, Amit Mahajan, Sam Payabvash
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00211-17

Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese
Cited by: 55
Author(s): Andrea S. Bertuzzi, Aaron M. Walsh, Jeremiah J. Sheehan, Paul D. Cotter, Fiona Crispie, P.L.H. McSweeney, Kieran N. Kilcawley, Mary C. Rea
Software Mentions: 4
Published: over 8 years ago

10.1001/jamanetworkopen.2020.16571

Effect of Outpatient Rehabilitation on Functional Mobility After Single Total Knee Arthroplasty
Cited by: 1
Author(s): Ching-Hui Hsieh, Gerben DeJong, Michele T. Vita, Alexander Zeymo, Sameer Desale
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-95284-0

Neonicotinoids can cause arrested pupal ecdysis in Lepidoptera
Cited by: 4
Author(s): Niranjana Krishnan, Russell A. Jurenka, Steven P. Bradbury
Software Mentions: 4
Published: about 5 years ago

10.1038/s42003-019-0442-2

TRAV1-2+ CD8+ T-cells including oligoconal expansions of MAIT cells are enriched in the airways in human tuberculosis
Cited by: 54
Author(s): Emily Wong, Marielle C. Gold, Erin W. Meermeier, Bongiwe Z. Xulu, Sharon Khuzwayo, Zuri A. Sullivan, Eisa Mahyari, Zoe Rogers, Henrik N. Kløverpris, Prabhat Kumar Sharma, Aneta Worley, Umesh Lalloo, Prinita Baijnath, Anish Ambaram, Leon Naidoo, Moosa Suleman, Rajhmun Madansein, James E. McLaren, Kristin Ladell, Kelly L. Miners, David A. Price, Samuel M. Behar, Morten Nielsen, Victoria Kasprowicz, Alasdair Leslie, William R. Bishai, Thumbi Ndung’u, David Lewinsohn
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-33911-z

Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
Cited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: almost 8 years ago

10.1093/cid/ciz1186

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants
Cited by: 33
Author(s): Alaric W. D’Souza, Eshia Moodley-Govender, Bertram M. Berla, Tejas Kelkar, Bin Wang, Xiaoqing Sun, Brodie Daniels, Anna Coutsoudis, Indi Trehan, Gautam Dantas
Software Mentions: 4
Published: over 6 years ago

10.1007/s12035-020-02128-5

Molecular Regulatory Mechanism and Toxicology of Neurodegenerative Processes in MPTP/Probenecid-Induced Progressive Parkinson’s Disease Mice Model Revealed by Transcriptome
Cited by: 12
Author(s): Weiwei Yang, Wenwen Hao, Zhen Meng, Shuizi Ding, Xiaodi Li, Tao Zhang, Weixiao Huang, Liang Xu, Yu Zhang, Jian Yang, Xiaosong Gu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-018-0610-5

The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems
Cited by: 30
Author(s): Guijuan Zhang, Bing Li, Jie Liu, Mingqiang Luan, Yao Long, Xiaotao Jiang, Ke Yu, Yuntao Guan
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-43158-x

An HRM Assay to Differentiate Sheeppox Virus Vaccine Strains from Sheeppox Virus Field Isolates and other Capripoxvirus Species
Cited by: 19
Author(s): Tesfaye Rufael, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Reingard Grabherr, Angelika Loitsch, Eeva Tuppurainen, Nick Nwankpa, K Tounkara, Hafsa Madani, Amel Omani, Mariame Diop, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 4
Published: over 7 years ago

10.1038/s42003-021-01912-w

CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation
Cited by: 10
Author(s): Louise van der Weyden, Victoria Harle, Gemma Turner, Victoria Offord, Vivek Iyer, Alastair P. Droop, A Swiaţkowska, Roy Rabbie, Andrew D. Campbell, Owen J. Sansom, Mercedes Pardo, Jyoti Choudhary, Ingrid Ferreira, Mark Tullett, Mark J. Arends, Anneliese O. Speak, David J. Adams
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.1186/s13072-019-0258-9

Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups
Cited by: 21
Author(s): Katherine A. Giles, Cathryn M. Gould, Qian Du, Ksenia Skvortsova, Jenny Z. Song, Madhavi P. Maddugoda, Joanna Achinger-Kawecka, Clare Stirzaker, Susan J. Clark, Phillippa C. Taberlay
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-34009-2

Increase in prefrontal cortex oxygenation during static muscular endurance performance is modulated by self-regulation strategies
Cited by: 41
Author(s): Wanja Wolff, Maik Bieleke, Anna Hirsch, Christian Wienbruch, Peter M. Gollwitzer, Julia Schüler
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-019-0695-5

Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area
Cited by: 27
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Julian Gordon, Prasanthi Gandhi, Rachel Reboulet, Jarrad Hampton-Marcell
Software Mentions: 4
Published: about 7 years ago

10.1001/jamanetworkopen.2020.37748

Use of Mechanical Circulatory Support Devices Among Patients With Acute Myocardial Infarction Complicated by Cardiogenic Shock
Cited by: 45
Author(s): Sanket S. Dhruva, Joseph S. Ross, Bobak J. Mortazavi, Nathan C. Hurley, Harlan M. Krumholz, Jeptha P. Curtis, Alyssa Berkowitz, Frederick A. Masoudi, John C. Messenger, Craig S. Parzynski, Che Ngufor, Saket Girotra, Amit P. Amin, Nilay D. Shah, Nihar R. Desai
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.652631

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images
Cited by: 19
Author(s): Yunhao Bai, Bokai Zhu, Xavier Rovira-Clavé, Han Chen, Maxim Markovic, Chi N. Chan, Tung–Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.583028

CCR7 Has Potential to Be a Prognosis Marker for Cervical Squamous Cell Carcinoma and an Index for Tumor Microenvironment Change
Cited by: 4
Author(s): Weijie Tian, Penghui Feng, Jun Wang, Ting Yan, Qing-Feng Qin, Donglin Li, Wei Liang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-34858-x

SEPROGADIC – serum protein-based gastric cancer prediction model for prognosis and selection of proper adjuvant therapy
Cited by: 7
Author(s): Hee-Sung Ahn, Tae Sung Sohn, Mi Jeong Kim, Byoung-Kyu Cho, Su Mi Kim, Seung Tae Kim, Eugene C. Yi, Cheolju Lee
Software Mentions: 4
Published: almost 8 years ago

10.1099/mgen.0.000266

Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors
Cited by: 18
Author(s): Eva Heinz, Richard Brindle, Andrina Morgan-McCalla, Keisha Peters, Nicholas R. Thomson
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-35578-y

Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage
Cited by: 1
Author(s): Puleng Letuma, Yasir Arafat, Muhammad Mohsin Waqas, Feifan Lin, Wenxiong Lin, Yiyang Zhang, Mamello Masita, Kai Fan, Zhaowei Li
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21239331

Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower (Helianthus annuus L.)
Cited by: 13
Author(s): Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya, Elizaveta Kolganova, Р. А. Комахин, Г. И. Карлов, A. A. Soloviev
Software Mentions: 4
Published: over 5 years ago

10.1111/mmi.14417

BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data
Cited by: 23
Author(s): Renske van Raaphorst, Morten Kjos, Jan‐Willem Veening
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12936-018-2203-y

Insecticide resistance evolution with mixtures and sequences: a model-based explanation
Cited by: 31
Author(s): Andy South, Ian M. Hastings
Software Mentions: 4
Published: over 8 years ago

10.3389/fmolb.2021.671309

Cancer-Associated circRNA–miRNA–mRNA Regulatory Networks: A Meta-Analysis
Cited by: 21
Author(s): Shaheerah Khan, Atimukta Jha, Amaresh C. Panda, Anshuman Dixit
Software Mentions: 4
Published: over 5 years ago

10.1186/s13072-021-00395-7

Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina
Cited by: 13
Author(s): Florian Carlier, M. Li, Laetitia Maroc, Robert Debuchy, Charbel Souaid, Daan Noordermeer, Pierre Grognet, Fabienne Malagnac
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms21228640

Whole Transcriptome Analysis of Myeloid Dendritic Cells Reveals Distinct Genetic Regulation in Patients with Allergies
Cited by: 5
Author(s): Kijeong Lee, Mi Ryung Han, Ji Yeon, Byoung Jae Kim, Tae Hoon Kim
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmolb.2021.708127

Glucotoxicity Activation of IL6 and IL11 and Subsequent Induction of Fibrosis May Be Involved in the Pathogenesis of Islet Dysfunction
Cited by: 6
Author(s): Laiwei Lu, Lili Zhuang, Xiaodong Shen, Liyong Yang
Software Mentions: 4
Published: about 5 years ago

10.1111/mmi.12977

<scp>K</scp>dm<scp>A</scp>, a histone<scp>H</scp>3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in<scp>A</scp>spergillus nidulans
Cited by: 41
Author(s): Agnieszka Gacek‐Matthews, Luke M. Noble, Clemens Gruber, Harald Berger, Michael Sulyok, Ana T. Marcos, Joseph Strauss, Alex Andrianopoulos
Software Mentions: 4
Published: over 11 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms21176060

Sperm Proteome after Interaction with Reproductive Fluids in Porcine: From the Ejaculation to the Fertilization Site
Cited by: 12
Author(s): Chiara Luongo, Leopoldo González-Brusi, Paula Cots-Rodríguez, M. J. Izquierdo-Rico, Manuel A. Bueno Sánchez, Francisco Alberto García–Vázquez
Software Mentions: 4
Published: about 6 years ago

10.3390/molecules26185543

Pyrethroid and Etofenprox Resistance in Anopheles gambiae and Anopheles coluzzii from Vegetable Farms in Yaoundé, Cameroon: Dynamics, Intensity and Molecular Basis
Cited by: 13
Author(s): Michael Piameu, Philippe Nwane, Wilson Toussile, Konstantinos Mavridis, Nadja Wipf, Lili Ranaise Mbakop, Stanislas Mandeng, Wolfgang Eyisap Ekoko, Jean-Claude Toto, Kelly Lionelle Ngaffo, Petronile Klorane Ngo Etounde, Arthur Titcho Ngantchou, Mouhamadou Chouaïbou, Pie Müller, Parfait Awono-Ambene, John Vontas, Josiane Etang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-36984-y

Comparative transcriptome analysis reveals relationship of three major domesticated varieties of Auricularia auricula-judae
Cited by: 15
Author(s): Yuhui Zhao, Liang Wang, Dongshan Zhang, Rong Li, Tianyou Cheng, Yibi Zhang, Liu Xue-ju, Gary Wong, Yuguo Tang, Hui Wang, Shan Gao
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-40737-w

A study of the relationship between the level of anxiety declared by MRI patients in the STAI questionnaire and their respiratory rate acquired by a fibre-optic sensor system
Cited by: 26
Author(s): Łukasz Dziuda, Piotr Zieliński, Paulina Baran, Mariusz Krej, Lech Kopka
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21175990

Peripheral Cytokine Levels Differ by HPV Status and Change Treatment-Dependently in Patients with Head and Neck Squamous Cell Carcinoma
Cited by: 14
Author(s): D Mytilineos, Jasmin Ezić, Adrian von Witzleben, Joannis Mytilineos, Ramin Lotfi, Daniel E. Fürst, Chrysanthi Tsamadou, Marie‐Nicole Theodoraki, Angelika Oster, Gunnar Völkel, Hans A. Kestler, Cornelia Brunner, Patrick J. Schuler, Johannes Doescher, Thomas Hoffmann, Simon Laban
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2021.628957

Comparative RNA-Seq Transcriptome Analysis on Pulmonary Inflammation in a Mouse Model of Asthma–COPD Overlap Syndrome
Cited by: 6
Author(s): Pei Ma, Shuyi Li, Hui Yang, Jing Yuan, Ziqian Zhang, Xuyu Li, Nan Fang, Mingbao Lin, Qi Hou
Software Mentions: 4
Published: over 5 years ago

10.3390/nu12123599

Se Status Prediction by Food Intake as Compared to Circulating Biomarkers in a West Algerian Population
Cited by: 9
Author(s): Moussa Belhadj, Latifa Sarra Kazi Tani, Nouria Dennouni-Medjati, Yahia Harek, Majda Dali Sahi, Qian Sun, Raban Arved Heller, Ammaria Behar, Laurent Charlet, Lutz Schomburg
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.molmet.2020.101078

Wnt/β-catenin signaling regulates adipose tissue lipogenesis and adipocyte-specific loss is rigorously defended by neighboring stromal-vascular cells
Cited by: 44
Author(s): Devika P. Bagchi, Akira Nishii, Ziru Li, Jennifer B. DelProposto, Callie A.S. Corsa, Hiroyuki Mori, Julie Hardij, Brian S. Learman, Carey N. Lumeng, Ormond A. MacDougald
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.6190

Forest floor temperature and greenness link significantly to canopy attributes in South Africa’s fragmented coastal forests
Cited by: 10
Author(s): Marion Pfeifer, Michael J. W. Boyle, Stuart Dunning, Pieter I. Olivier
Software Mentions: 4
Published: over 7 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: about 8 years ago

10.1128/mSystems.00133-16

SSUnique: Detecting Sequence Novelty in Microbiome Surveys
Cited by: 4
Author(s): Michael D. J. Lynch, Josh D. Neufeld
Software Mentions: 4
Published: over 9 years ago

10.1186/s40168-017-0370-7

The Inuit gut microbiome is dynamic over time and shaped by traditional foods
Cited by: 43
Author(s): Geneviève Dubois, Catherine Girard, François‐Joseph Lapointe, B. Jesse Shapiro
Software Mentions: 4
Published: almost 9 years ago

10.1002/cam4.3977

Identification of prognostic and bone metastasis‐related alternative splicing signatures in mesothelioma
Cited by: 1
Author(s): Runzhi Huang, Zixuan Zheng, Sijia Liu, Penghui Yan, Dianwen Song, Huabin Yin, Peng Hu, Xiaolong Zhu, Zhengyan Chang, Yihan Liu, Juanwei Zhuang, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-36292-5

Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial
Cited by: 39
Author(s): Xuan He, Mariana Parenti, Tove Grip, Magnus Domellöf, Bo Lönnerdal, Olle Hernell, Niklas Timby, Carolyn M. Slupsky
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-54309-5

Root exudate composition of grass and forb species in natural grasslands
Cited by: 38
Author(s): Sophie Dietz, Katharina Herz, Karin Gorzolka, Ute Jandt, Helge Bruelheide, Dierk Scheel
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-37269-0

Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions
Cited by: 67
Author(s): Narinder Singh, Shuangye Wu, W. J. Raupp, Sunish K. Sehgal, Sanu Arora, Vijay K. Tiwari, Prashant Vikram, Sukhwinder Singh, Parveen Chhuneja, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21155359

Small Extracellular Vesicles Isolated from Serum May Serve as Signal-Enhancers for the Monitoring of CNS Tumors
Cited by: 17
Author(s): Gabriella Dobra, Mátyás Bukva, Z. G. Szabó, Bella Bruszel, Mária Harmati, Edina Gyukity-Sebestyén, Adrienn Jenei, Mónika Szűcs, Péter Horváth, Tamás Bı́ró, Álmos Klekner, Krisztina Buzás
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2021.686886

Platelet-Derived Growth Factor-D Activates Complement System to Propagate Macrophage Polarization and Neovascularization
Cited by: 5
Author(s): Ze Xiong, Qianqian Wang, Wanhong Li, Lijuan Huang, Jianing Zhang, Juanhua Zhu, Bingbing Xie, Shasha Wang, Haiqing Kuang, Xianchai Lin, Chunsik Lee, Anil Kumar, Xuri Li
Software Mentions: 4
Published: about 5 years ago

10.1186/s40170-021-00257-6

High-resolution spatiotemporal pHe and pO2 imaging in head and neck and oesophageal carcinoma cells
Cited by: 2
Author(s): Alexandra Blancke Soares, Robert J. Meier, Gregor Liebsch, Sabina Schwenk‐Zieger, Martin E. Kirmaier, Sebastian Theurich, Magdalena Widmann, Martin Canis, Olivier Gires, Frank Haubner
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms21155265

New Methodology for the Identification of Metabolites of Saccharides and Cyclitols by Off-Line EC-MALDI-TOF-MS
Cited by: 3
Author(s): Gulyaim Sagandykova, Justyna Walczak-Skierska, Fernanda Monedeiro, Paweł Pomastowski
Software Mentions: 4
Published: about 6 years ago

10.1186/s13072-018-0252-7

Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia
Cited by: 14
Author(s): Sara Wernig-Zorc, Mukesh Yadav, Pradeep Kumar Kopparapu, Mats Bemark, Hallgerður Lind Kristjánsdóttir, Per‐Ola Andersson, Chandrasekhar Kanduri, Meena Kanduri
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.10877

The role of gender and academic degree on preference for smooth curvature of abstract shapes
Cited by: 4
Author(s): Letizia Palumbo, Giulia Rampone, Marco Bertamini
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-91198-z

The epidemiological landscape of anemia in women of reproductive age in sub-Saharan Africa
Cited by: 10
Author(s): Esteban Correa-Agudelo, Hae Young Kim, Godfrey Musuka, Zindoga Mukandavire, Freeman D. Miller, Frank Tanser, Diego F. Cuadros
Software Mentions: 4
Published: about 5 years ago

10.1099/mgen.0.000338

Coinfinder: detecting significant associations and dissociations in pangenomes
Cited by: 33
Author(s): Fiona Whelan, Martin Rusilowicz, James O. McInerney
Software Mentions: 4
Published: over 6 years ago

10.3390/molecules25102353

Sexual Dimorphism in Energy Metabolism of Wistar Rats Using Data Analysis
Cited by: 12
Author(s): Andrea Leškaničová, Olga Chovancova, Marián Babinčák, Ľudmila Verbóová, Zuzana Benetinová, Denisa Maceková, Jozef Kostolny, B Smajda, Terézia Kisková
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-42308-5

Gene Expression Profiles Associated with Brain Aging are Altered in Schizophrenia
Cited by: 12
Author(s): Sarven Sabunciyan
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2020.00331

Evidence of a Recessively Inherited CCN3 Mutation as a Rare Cause of Early-Onset Parkinsonism
Cited by: 1
Author(s): Steven Bentley, Suliman Khan, Marco Öchsner, Susitha Premarathne, Zain Aslam, Javed Fowdar, Jamila Iqbal, Muhammad Naeem, Christopher Love, Stephen A. Wood, George D. Mellick, Alex M. Sykes
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0091783

From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System
Cited by: 22
Author(s): Kenna D. S. Lehmann, Brian W. Goldman, Ian Dworkin, David M. Bryson, A. Wagner
Software Mentions: 4
Published: over 12 years ago

10.1002/jbm4.10496

Single‐Cell <scp>RNA</scp>‐Sequencing Reveals the Breadth of Osteoblast Heterogeneity
Cited by: 11
Author(s): Hirotaka Yoshioka, Saki Okita, Masashi Nakano, Takeshi Minamizaki, Asako Nubukiyo, Yusuke Sotomaru, Edith Bonnelye, Katsuyuki Kozai, Kotaro Tanimoto, Jane E. Aubin, Yuji Yoshiko
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2021.682535

New-Onset Postoperative Seizures in Patients With Diffuse Gliomas: A Risk Assessment Analysis
Cited by: 3
Author(s): Lianwang Li, Guanzhang Li, Fang Sun, Kenan Zhang, Ruoyu Huang, Yinyan Wang, Chuanbao Zhang, Yiming Li, Wei Zhang, Zhong Zhang, Jin Wei Qiang, Dabiao Zhou, Xing Fan, Tao Jiang
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.11995

The modulatory properties of Astragalus membranaceus treatment on endometrial cancer: an integrated pharmacological method
Cited by: 4
Author(s): Qianqian Zhang, Xianghua Huang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-021-07412-9

Investigation of ancestral alleles in the Bovinae subfamily
Cited by: 2
Author(s): Maulana M. Naji, Yuri Tani Utsunomiya, Johann Sölkner, Benjamin D. Rosen, Gábor Mészáros
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-92507-2

The in-utero experience of piglets born from sows with lameness shapes their life trajectory
Cited by: 8
Author(s): Marisol Parada Sarmiento, Thiago Bernardino, Patrícia Tatemoto, Gina Polo, Adroaldo José Zanella
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-38049-6

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: over 7 years ago

10.1038/s42003-020-0837-0

Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells
Cited by: 39
Author(s): Jackson A. Hoffman, Brian N. Papas, Kevin W. Trotter, Trevor Archer
Software Mentions: 4
Published: over 6 years ago

10.3390/genes11060651

Transcription Analysis of the Chemerin Impact on Gene Expression Profile in the Luteal Cells of Gilts
Cited by: 7
Author(s): Karol G Makowczenko, J Jastrzebski, Karol Szeszko, Nina Smolińska, Łukasz Paukszto, Marta Kieżun, Edyta Rytelewska, Barbara Kamińska, Tadeusz Kamiński
Software Mentions: 4
Published: about 6 years ago

10.1186/s12862-018-1322-y

Measurements of hybrid fertility and a test of mate preference for two house mouse races with massive chromosomal divergence
Cited by: 8
Author(s): Sofia A. Grize, Elodie Wilwert, Jeremy B. Searle, Anna K. Lindholm
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2021.576382

Potential Molecular Mechanism of TNF Superfamily-Related Genes in Glioblastoma Multiforme Based on Transcriptome and Epigenome
Cited by: 6
Author(s): Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Wei-Cheng Lu
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.668833

Detection of Hematopoietic Stem Cell Transcriptome in Human Fetal Kidneys and Kidney Organoids Derived From Human Induced Pluripotent Stem Cells
Cited by: 3
Author(s): Jin Wook Hwang, Christophe Desterke, Julien Loisel‐Duwattez, Frank Griscelli, Annelise Bennaceur‐Griscelli, Ali G Turhan
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2019.00450

Cross-Sectional and Longitudinal MRI Brain Scans Reveal Accelerated Brain Aging in Multiple Sclerosis
Cited by: 61
Author(s): Einar August Høgestøl, Tobias Kaufmann, Gro Owren Nygaard, Mona K. Beyer, Piotr Sowa, Jan Egil Nordvik, Knut-Kristian Kolskår, Geneviève Richard, Ole A. Andreassen, Hanne F. Harbo, Lars T. Westlye
Software Mentions: 4
Published: over 7 years ago

10.1016/j.molmet.2018.09.011

Regulation of glucose uptake and inflammation markers by FOXO1 and FOXO3 in skeletal muscle
Cited by: 35
Author(s): Lars Lundell, Julie Massart, Ali Altıntaş, Anna Krook, Juleen R. Zierath
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-90416-y

Machine learning prediction of sleep stages in dairy cows from heart rate and muscle activity measures
Cited by: 4
Author(s): Laura B. Hunter, Abdul Baten, Marie J. Haskell, Fritha M. Langford, C. E. O'Connor, James R. Webster, Kevin J. Stafford
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2020.582767

Added Prognostic Value of Hemorrhagic Transformation Quantification in Patients With Acute Ischemic Stroke
Cited by: 8
Author(s): Katinka R. van Kranendonk, Kilian M. Treurniet, Anna M. M. Boers, Olvert A. Berkhemer, Jonathan M. Coutinho, Hester F. Lingsma, Wim H. van Zwam, Aad van der Lugt, Robert J. van Oostenbrugge, Diederik W.J. Dippel, Yvo B.W.E.M. Roos, Henk A. Marquering, Charles B. L. M. Majoie, Clean Registry Investigators
Software Mentions: 4
Published: almost 6 years ago

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Papers Mentioning ggplot2 11,441