cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s42003-021-01912-w

CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation
Cited by: 10
Author(s): Louise van der Weyden, Victoria Harle, Gemma Turner, Victoria Offord, Vivek Iyer, Alastair P. Droop, A Swiaţkowska, Roy Rabbie, Andrew D. Campbell, Owen J. Sansom, Mercedes Pardo, Jyoti Choudhary, Ingrid Ferreira, Mark Tullett, Mark J. Arends, Anneliese O. Speak, David J. Adams
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-020-1112-0

Higher tree diversity increases soil microbial resistance to drought
Cited by: 20
Author(s): Lauren Gillespie, Nathalie Fromin, Alexandru Milcu, Bruno Buatois, Clovis Pontoizeau, Stephan Hättenschwiler
Software Mentions: 4
Published: almost 6 years ago

10.1038/s42003-021-02189-9

Claudin-2 promotes colorectal cancer liver metastasis and is a biomarker of the replacement type growth pattern
Cited by: 24
Author(s): Sébastien Tabariès, Matthew G. Annis, Anthoula Lazaris, Stephanie Petrillo, Jennifer Huxham, A. Achour, Vincent Palmieri, Jaclyn M. Chabot, Radia Marie Johnson, Steven Van Laere, Cornelis Verhoef, Yasmina Hachem, Sara Yumeen, Nicholas Meti, Atilla Ömeroğlu, Gulbeyaz Altinel, Zu‐Hua Gao, Alan Yu, Dirk J. Grünhagen, Peter B. Vermeulen, Peter Metrakos, Peter M. Siegel
Software Mentions: 4
Published: about 5 years ago

10.1038/s42003-020-01636-3

Single-cell transcriptomics following ischemic injury identifies a role for B2M in cardiac repair
Cited by: 39
Author(s): Bas Molenaar, Louk T. Timmer, Marjolein Droog, Ilaria Perini, Daniëlle Versteeg, Lieneke Kooijman, Jantine Monshouwer-Kloots, Hesther de Ruiter, Monika M Gladka, Eva van Rooij
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-01834-7

High resolution DNA barcode library for European butterflies reveals continental patterns of mitochondrial genetic diversity
Cited by: 51
Author(s): Vlad Dincă, Leonardo Dapporto, Panu Somervuo, Raluca Vodă, Sylvain Cuvelier, Martin Gascoigne‐Pees, Peter Huemer, Marko Mutanen, Paul D. N. Hebert, Roger Vila
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-019-0391-9

Pharmacological systems analysis defines EIF4A3 functions in cell-cycle and RNA stress granule formation
Cited by: 25
Author(s): Alborz Mazloomian, Shinsuke Araki, Momoko Ohori, Amal M. El-Naggar, Damian Yap, Ali Bashashati, Shigetomi Nakao, Poul H. Sorensen, Atsushi Nakanishi, Sohrab P. Shah, Samuel Aparicio
Software Mentions: 4
Published: about 7 years ago

10.1038/s42003-020-01152-4

Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs
Cited by: 23
Author(s): Maxwell J. Scott, Joshua B. Benoit, Rebecca J. Davis, Samuel T. Bailey, Virág Varga, Ellen O. Martinson, Paul V. Hickner, Zainulabeuddin Syed, Gisele Antoniazzi Cardoso, Tatiana Teixeira Torres, Matthew T. Weirauch, Elizabeth H. Scholl, Adam M. Phillippy, Agustin Sagel, Mario Vasquez, Gladys Quintero, S. Skoda
Software Mentions: 4
Published: almost 6 years ago

10.1111/eva.12796

Adaptive variation for growth and resistance to a novel pathogen along climatic gradients in a foundation tree
Cited by: 21
Author(s): Collin W. Ahrens, Richard Mazanec, T. Paap, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 4
Published: about 7 years ago

10.1111/eva.12894

Mate choice, reproductive success and inbreeding in white rhinoceros: New insights for conservation management
Cited by: 13
Author(s): Petra Kretzschmar, Hailie Auld, Peter T. Boag, Udo Gansloßer, C. Scott, Peter J. Van Coeverden de Groot, Alexandre Courtiol
Software Mentions: 4
Published: over 6 years ago

10.1111/eva.12407

Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees
Cited by: 27
Author(s): Victoria L. Pritchard, Jaakko Erkinaro, Matthew Kent, Eero Niemelä, Panu Orell, Sigbjørn Lien, Craig R. Primmer
Software Mentions: 4
Published: almost 10 years ago

10.1111/eva.13234

Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its host
Cited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: about 5 years ago

10.1111/eva.13049

Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens
Cited by: 9
Author(s): Kaylee A. Byers, Tom R Booker, Matthew Combs, Chelsea G. Himsworth, Jason Munshi‐South, David M. Patrick, Michael C. Whitlock
Software Mentions: 4
Published: almost 6 years ago

10.1111/eva.12825

Signatures of adaptive divergence among populations of an avian species of conservation concern
Cited by: 10
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Kevin P. Oh, Robert S. Cornman, Sara J. Oyler‐McCance
Software Mentions: 4
Published: almost 7 years ago

10.1002/evl3.243

Larger cells have relatively smaller nuclei across the Tree of Life
Cited by: 11
Author(s): Martino E. Malerba, Dustin J. Marshall
Software Mentions: 4
Published: almost 5 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution of<i>Heliconius</i>wings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: over 6 years ago

10.1007/s10493-018-0320-5

Life-history consequences of bidirectional selection for male morph in a male-dimorphic bulb mite
Cited by: 4
Author(s): Tom P. G. Van den Beuken, Isabel M. Smallegange
Software Mentions: 4
Published: over 7 years ago

10.1186/s40164-020-00181-3

The global, regional, and national burden of kidney cancer and attributable risk factor analysis from 1990 to 2017
Cited by: 23
Author(s): Xia Bai, Ming Yi, Bing Dong, Xinhua Zheng, Kongming Wu
Software Mentions: 4
Published: over 5 years ago

10.1038/s12276-021-00627-6

Gut microbiota restoration through fecal microbiota transplantation: a new atopic dermatitis therapy
Cited by: 36
Author(s): Jong-Hwa Kim, Ki‐Young Kim, Wonyong Kim
Software Mentions: 4
Published: about 5 years ago

10.12688/f1000research.6925.1

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
Cited by: 71
Author(s): Raivo Kolde, Jaak Vilo
Software Mentions: 4
Published: almost 11 years ago

10.12688/f1000research.10016.1

Environmental volunteer well-being: Managers’ perception and actual well-being of volunteers
Cited by: 9
Author(s): Gitte Kragh, Richard Stafford, Susanna Curtin, Anita Díaz
Software Mentions: 4
Published: over 9 years ago

10.12688/f1000research.15789.2

TRGAted: A web tool for survival analysis using protein data in the Cancer Genome Atlas.
Cited by: 18
Author(s): Nicholas Borcherding, Nicholas L. Bormann, Andrew P. Voigt, Weizhou Zhang
Software Mentions: 4
Published: over 7 years ago

10.12688/f1000research.27284.2

What are the long-term symptoms and complications of COVID-19: a protocol for a living systematic review
Cited by: 3
Author(s): Melina Michelen, Hung-Yuan Cheng, Lakshmi Manoharan, Natalie Elkheir, Andrew Dagens, Claire Hastie, Margaret O’Hara, Jake Suett, Dania Dahmash, Paulina Bugaeva, Ishmeala Rigby, Daniel Munblit, Eli Harriss, Amanda Burls, Carol Foote, Janet T. Scott, Gail Carson, Piero Olliaro, Louise Sigfrid, Charitini Stavropoulou
Software Mentions: 4
Published: almost 5 years ago

10.12688/f1000research.4510.2

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
Cited by: 38
Author(s): Keiichiro Ono, Barry Demchak, Trey Ideker
Software Mentions: 4
Published: over 11 years ago

10.1002/2211-5463.13130

<i>CCR7</i> and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: about 5 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: over 8 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2021.606065

Identification of Hub Genes and Immune Infiltration in Psoriasis by Bioinformatics Method
Cited by: 8
Author(s): Wenxing Su, Yuqian Wei, Biao Huang, Jiang Ji
Software Mentions: 4
Published: over 5 years ago

10.3389/fnhum.2021.684950

Electrophysiological and Transcriptomic Features Reveal a Circular Taxonomy of Cortical Neurons
Cited by: 5
Author(s): Alejandro Rodríguez-Collado, Cristina Rueda
Software Mentions: 4
Published: almost 5 years ago

10.3389/fnhum.2020.00352

Awareness and Stimulus-Driven Spatial Attention as Independent Processes
Cited by: 3
Author(s): Diane Baier, Florian Goller, Ulrich Ansorge
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnhum.2019.00022

Human Sensory LTP Predicts Memory Performance and Is Modulated by the BDNF Val66Met Polymorphism
Cited by: 21
Author(s): Meg J. Spriggs, Christopher Thompson, David Moreau, Nicolas A. McNair, C. Carolyn Wu, Yvette N. Lamb, Nicole S. McKay, Rohan O. C. King, Ushtana Antia, Andrew N. Shelling, Jeff P. Hamm, Timothy J. Teyler, Bruce Russell, Karen E. Waldie, Ian J. Kirk
Software Mentions: 4
Published: over 7 years ago

10.3389/fnhum.2019.00448

Cross-Situational Statistical Learning of New Words Despite Bilateral Hippocampal Damage and Severe Amnesia
Cited by: 7
Author(s): David E. Warren, Tanja C. Roembke, Natalie V. Covington, Bob McMurray, Melissa C. Duff
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2019.02403

Adaptive Features of Natural Killer Cells in Multiple Sclerosis
Cited by: 15
Author(s): Antía Moreira, Elisenda Alari-Pahissa, Elvira Munteis, Antonio Vera, Ana Zabalza, Mireia Llop, Noelia Villarrubia, Marcel Costa‐García, Roberto Álvarez‐Lafuente, Luisa María Villar, Miguel López‐Botet, José Enrique Martínez-Rodríguez
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.670777

Decidual NR2F2-Expressing CD4+ T Cells Promote TH2 Transcriptional Program During Early Pregnancy
Cited by: 2
Author(s): Yan Lin, Di Zhang, Yangyang Li, Yunyun Li, Bin Li, Meirong Du
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.598152

Gut Microbiome of Children and Adolescents With Primary Sclerosing Cholangitis in Association With Ulcerative Colitis
Cited by: 16
Author(s): Ramon V. Cortez, Luana Moreira, Marina Padilha, Mariana D Bibas, Ricardo Katsuya Toma, Gilda Porta, Carla Romano Taddei
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.645770

IFNγ Modulates the Immunopeptidome of Triple Negative Breast Cancer Cells by Enhancing and Diversifying Antigen Processing and Presentation
Cited by: 21
Author(s): Gabriel Gonçalves, Kerry A Mullan, Divya Duscharla, Rochelle Ayala, Nathan P. Croft, Pouya Faridi, Anthony W. Purcell
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.652631

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images
Cited by: 19
Author(s): Yunhao Bai, Bokai Zhu, Xavier Rovira-Clavé, Han Chen, Maxim Markovic, Chi N. Chan, Tung–Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2019.00795

Elevated CCL19/CCR7 Expression During the Disease Process of Primary Sjögren's Syndrome
Cited by: 18
Author(s): Zhenwei Liu, Fengxia Li, Axiao Pan, Huangqi Xue, Shan Jiang, Ce Zhu, Mengmeng Jin, Jinxia Fang, Xiongzhao Zhu, Matthew A. Brown, Xiaobing Wang
Software Mentions: 4
Published: about 7 years ago

10.3389/fimmu.2021.686691

Dynamics of the Magnitude, Breadth and Depth of the Antibody Response at Epitope Level Following Dengue Infection
Cited by: 5
Author(s): Francesca Falconi-Agapito, Karen Kerkhof, Xiomara Merino, Johan Míchiels, Marjan Van Esbroeck, Koen Bartholomeeusen, Michael Talledo, Kevin K. Ariën
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.685742

Antibiotic Intervention Affects Maternal Immunity During Gestation in Mice
Cited by: 6
Author(s): Marilen Benner, Alejandro Lopez-Rincon, Suzan Thijssen, Johan Garssen, Gerben Ferwerda, Irma Joosten, Renate G. van der Molen, Astrid Hogenkamp
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.679458

Comparative Proteomic Analysis Reveals Varying Impact on Immune Responses in Phorbol 12-Myristate-13-Acetate-Mediated THP-1 Monocyte-to-Macrophage Differentiation
Cited by: 21
Author(s): Sneha M. Pinto, Hera Kim, Yashwanth Subbannayya, Miriam S. Giambelluca, Korbinian Bösl, Liv Ryan, Animesh Sharma, Richard K. Kandasamy
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2019.00555

Preferential Infiltration of Unique Vγ9Jγ2-Vδ2 T Cells Into Glioblastoma Multiforme
Cited by: 21
Author(s): Mijeong Lee, Chanho Park, Jeongmin Woo, Jin-Ho Kim, Inseong Kho, Do‐Hyun Nam, Woong-Yang Park, Yeonsoo Kim, Doo‐Sik Kong, Hye Won Lee, Tae Jin Kim
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2018.01829

Human Bone Marrow-Resident Natural Killer Cells Have a Unique Transcriptional Profile and Resemble Resident Memory CD8+ T Cells
Cited by: 28
Author(s): Janine Melsen, Gertjan Lugthart, Carly Vervat, Szymon M. Kiełbasa, Sander A.J. van der Zeeuw, Henk P.J. Buermans, Monique M. van Ostaijen-ten Dam, Arjan C. Lankester, Marco W. Schilham
Software Mentions: 4
Published: almost 8 years ago

10.3389/fimmu.2021.691725

Severe COVID-19 Recovery Is Associated with Timely Acquisition of a Myeloid Cell Immune-Regulatory Phenotype
Cited by: 29
Author(s): A.C. Trombetta, Guilherme B. Farias, André M. C. Gomes, Ana Godinho‐Santos, Pedro Rosmaninho, Carolina M. Conceição, Joel Laia, Diana Santos, Afonso R. M. Almeida, Catarina Mota, Andréia Gomes, María Luisa Madueño Serrano, Marc Veldhoen, Ana E. Sousa, S. Fernandes
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.01982

Human Regulatory Dendritic Cells Develop From Monocytes in Response to Signals From Regulatory and Helper T Cells
Cited by: 10
Author(s): Xiangyue Zhang, Pingping Zheng, Tyler R. Prestwood, Hong Zhang, Yaron Carmi, Lorna Tolentino, Nancy Wu, Okmi Choi, Daniel A. Winer, Samuel Strober, Eun‐Suk Kang, Michael N. Alonso, Edgar G. Engleman
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2021.547333

The Immune Heterogeneity Between Pulmonary Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Analysis Based on lncRNA Model
Cited by: 11
Author(s): Tao Yan, Guoyuan Ma, Kai Wang, Weidong Liu, W. L. Zhong, Jiajun Du
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.663736

MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients
Cited by: 8
Author(s): Fatima Heinicke, Xiao Zhong, Siri Tennebø Flåm, Johannes Breidenbach, Magnus Leithaug, Marthe Thoresen Mæhlen, Siri Lillegraven, Anna‐Birgitte Aga, Ellen Sauar Norli, Maria D Mjaavatten, Espen A. Haavardsholm, Manuela Zucknick, Simon Rayner, Benedicte A. Lie
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2018.02523

Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice
Cited by: 4
Author(s): Wendi Bacon, Russell S. Hamilton, Ziyi Yu, Jens Kieckbusch, Dean Hawkes, Ada Maria Krzak, Chris Abell, Francesco Colucci, D. Stephen Charnock-Jones
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2019.01253

Signal Integration of IFN-I and IFN-II With TLR4 Involves Sequential Recruitment of STAT1-Complexes and NFκB to Enhance Pro-inflammatory Transcription
Cited by: 32
Author(s): Anna Piaszyk-Borychowska, Lajos Széles, Attila Csermely, Hsüch‐Ching Chiang, Joanna Wesoły, Chien‐Kuo Lee, László Nagy, Hans A.R. Bluyssen
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2019.02302

Exploring the Link Between the Geographical Origin of European Fermented Foods and the Diversity of Their Bacterial Communities: The Case of Fermented Meats
Cited by: 35
Author(s): Emiel Niels Van Reckem, Wim Geeraerts, Christina Charmpi, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.00348

Mycobiome Diversity in Traditionally Prepared Starters for Alcoholic Beverages in India by High-Throughput Sequencing Method
Cited by: 21
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Jyoti Prakash Tamang
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.01002

Water Masses and Depth Structure Prokaryotic and T4-Like Viral Communities Around Hydrothermal Systems of the Nordic Seas
Cited by: 6
Author(s): Sven Le Moine Bauer, Anne Stensland, Frida Lise Daae, Ruth‐Anne Sandaa, Ingunn H. Thorseth, Ida Helene Steen, Helge K. Dahle
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2017.00548

Transcriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa
Cited by: 26
Author(s): Xia Zhao, Mengyu Shen, Xingyu Jiang, Wei Shen, Qian Zhong, Yuhui Yang, Yinling Tan, Melissa Agnello, Xuesong He, Fuquan Hu, Shuai Le
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.00737

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Cited by: 27
Author(s): Jasna Kovač, Kevin J. Cummings, Lorraine D. Rodriguez‐Rivera, Laura M. Carroll, Anil J. Thachil
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2021.718727

Soil Fungal Community in Grazed Inner Mongolian Grassland Adjacent to Coal-Mining Activity
Cited by: 2
Author(s): Liji Xie, Yinli Bi, Xianglei Li, Kun Wang, Peter Christie
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.679409

Zetaproteobacteria Pan-Genome Reveals Candidate Gene Cluster for Twisted Stalk Biosynthesis and Export
Cited by: 5
Author(s): Elif Koeksoy, Oliver Bezuidt, Timm Bayer, Clara S. Chan, David Emerson
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2017.02379

Responses of Microbial Community Composition to Temperature Gradient and Carbon Steel Corrosion in Production Water of Petroleum Reservoir
Cited by: 35
Author(s): Xiaoxiao Li, Tao Yang, Serge Maurice Mbadinga, Jinfeng Liu, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00715

Response of Lactobacillus plantarum WCFS1 to the Gram-Negative Pathogen-Associated Quorum Sensing Molecule N-3-Oxododecanoyl Homoserine Lactone
Cited by: 16
Author(s): Joseph R. Spangler, Scott N. Dean, Dagmar H. Leary, Scott A. Walper
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.620002

AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
Cited by: 24
Author(s): Alexey Yu. Kuzmenkov, Ivan V. Trushin, Alina G. Vinogradova, Andrey A. Avramenko, М В Сухорукова, Surbhi Malhotra-Kumar, А В Дехнич, Mikhail V. Edelstein, Roman Kozlov
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.554105

Diverse Bacterial Communities From Qaidam Basin of the Qinghai–Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions
Cited by: 6
Author(s): Wei Zhang, Ali Bahadur, Gaosen Zhang, Binglin Zhang, Xiukun Wu, Tuo Chen, Guangxiu Lu
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2018.01657

Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains
Cited by: 29
Author(s): Hinda Doucouré, Pérez-Quintero Al, Ganna Reshetnyak, C. Tekete, Florence Auguy, Emilie Thomas, Ralf Koebnik, Boris Szurek, Ousmane Koïta, Verdier, Sébastien Cunnac
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2021.641141

Gut Structure and Microbial Communities in Sirex noctilio (Hymenoptera: Siricidae) and Their Predicted Contribution to Larval Nutrition
Cited by: 9
Author(s): Jiale Li, Chengcheng Li, Ming Wang, Lixiang Wang, Xiaobo Liu, Chenglong Gao, Lili Ren, Luo YouQing
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2017.01787

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T–A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae
Cited by: 11
Author(s): Pascal Bartling, Henner Brinkmann, Boyke Bunk, Jörg Overmann, Markus Göker, Jörn Petersen
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2020.616875

Curing of Cocoa Beans: Fine-Scale Monitoring of the Starter Cultures Applied and Metabolomics of the Fermentation and Drying Steps
Cited by: 19
Author(s): Cristian Díaz-Muñoz, Dario Van de Voorde, Andrea Comasio, Marko Verce, Carlos Eduardo Hernandez, Stefan Weckx, Luc De Vuyst
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.604964

Diversity and Structure of the Endophytic Bacterial Communities Associated With Three Terrestrial Orchid Species as Revealed by 16S rRNA Gene Metabarcoding
Cited by: 24
Author(s): Pasquale Alibrandi, Sylvia Schnell, Silvia Perotto, Massimiliano Cardinale
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01359

Host Gender and Androgen Levels Regulate Gut Bacterial Taxa in Pigs Leading to Sex-Biased Serum Metabolite Profiles
Cited by: 26
Author(s): Maozhang He, Jun Gao, Jinyuan Wu, Yunyan Zhou, Hao Fu, Shanlin Ke, Hui Yang, Congying Chen, Lusheng Huang
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2019.01006

Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence
Cited by: 7
Author(s): Beatriz Beamud, María Alma Bracho, Fernando González‐Candelas
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.720513

DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data
Cited by: 8
Author(s): Daniel Loos, Lu Zhang, Christine Beemelmanns, Oliver Kurzai, Gianni Panagiotou
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.617151

Rapid Changes in the Phytoplankton Community of a Subtropical, Shallow, Hypereutrophic Lake During the Rainy Season
Cited by: 19
Author(s): Osiris Díaz-Torres, José de Anda, Ofelia Yadira Lugo-Melchor, Adriana Pacheco, Danielle A. Orozco-Nunnelly, Harvey Shear, Carolina Senés‐Guerrero, Misael Sebastian Gradilla‐Hernández
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01636

Evidence of Vent-Adaptation in Sponges Living at the Periphery of Hydrothermal Vent Environments: Ecological and Evolutionary Implications
Cited by: 12
Author(s): Magdalena N. Georgieva, Sergi Taboada, Ana Riesgo, Cristina Díez‐Vives, Fabio C. De Leo, Rachel M. Jeffreys, Jonathan T. Copley, Crispin T. S. Little, Pilar Ríos, Javier Cristobo, Jon Thomassen Hestetun, Adrian G. Glover
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.01242

Prokaryotic Response to Phytodetritus-Derived Organic Material in Epi- and Mesopelagic Antarctic Waters
Cited by: 6
Author(s): Vincenzo Manna, Francesca Malfatti, Elisa Banchi, Federica Cerino, Fabio De Pascale, Annalisa Franzo, Riccardo Schiavon, Alessandro Vezzi, Paola Del Negro, Mauro Celussi
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.650828

Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.616149

Prognostic Impact of Radiological Consolidation Tumor Ratio in Clinical Stage IA Pulmonary Ground Glass Opacities
Cited by: 21
Author(s): Junjie Xi, Jiacheng Yin, Jiaqi Liang, Cheng Zhan, Wei Jiang, Lin Zhang, Songtao Xu, Qun Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.01658

Circulating Tumor Cells Expressing the Prostate Specific Membrane Antigen (PSMA) Indicate Worse Outcome in Primary, Non-Metastatic Triple-Negative Breast Cancer
Cited by: 14
Author(s): Sabine Kasimir‐Bauer, Corinna Keup, Oliver Hoffmann, Siegfried Hauch, Rainer Kimmig, Ann‐Kathrin Bittner
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.716921

HNRNPA2B1, as a m6A Reader, Promotes Tumorigenesis and Metastasis of Oral Squamous Cell Carcinoma
Cited by: 22
Author(s): Feiya Zhu, Tianru Yang, Meiling Yao, Ting Shen, Changyun Fang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2021.620200

Methylation Regulation of TLR3 on Immune Parameters in Lung Adenocarcinoma
Cited by: 3
Author(s): Ang Li, Hongjiao Wu, Quan Tian, Yi Zhang, Zhi Zhang, Xuemei Zhang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2018.00095

CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
Cited by: 35
Author(s): William S. Chen, Ranjit S. Bindra, Allen Mo, Thomas J. Hayman, Zain Husain, Joseph N. Contessa, Stephen G. Gaffney, Jeffrey P. Townsend, James B. Yu
Software Mentions: 4
Published: about 8 years ago

10.3389/fonc.2021.633899

High BLM Expression Predicts Poor Clinical Outcome and Contributes to Malignant Progression in Human Cholangiocarcinoma
Cited by: 7
Author(s): Xiaoqiang Du, Chen Zhang, Chuanzheng Yin, Wenjie Wang, Xueke Yan, Dawei Xie, Xichuan Zheng, Qi Zheng, Min Li, Zifang Song
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.00750

Incidence, Prognostic Factors and Survival Outcome in Patients With Primary Hepatic Lymphoma
Cited by: 8
Author(s): Shilong Zhang, Chen Chen, Qianwen Rao, Zhe Guo, Xin Wang, Zhiming Wang, Li‐Shun Wang
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.688882

MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2021.720125

Identification of the Prognosis Value and Potential Mechanism of Immune Checkpoints in Renal Clear Cell Carcinoma Microenvironment
Cited by: 18
Author(s): Guodong Liao, Ping Wang, Yuyong Wang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.569985

Diverse Macrophage Populations Contribute to the Inflammatory Microenvironment in Premalignant Lesions During Localized Invasion
Cited by: 16
Author(s): Ayman Ibrahim, Matthew Moss, Zane Gray, Michelle D. Rojo, Caitlin M. Burke, Kathryn L. Schwertfeger, Camila O. dos Santos, Heather L. Machado
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.636632

Long Noncoding RNA NONHSAT079852.2 Contributes to GBM Recurrence by Functioning as a ceRNA for has-mir-10401-3p to Facilitate HSPA1A Upregulation
Cited by: 3
Author(s): Ningning Zhao, Jiajie Zhang, Lili Zhao, Xiaoni Fu, Qian Zhao, Min Chao, Haiyan Cao, Yang Jiao, Yibo Hu, Chao Chen, Liang Wang, Huijuan Wang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2020.567249

Molecular Mechanism Underlying Derepressed Male Production in Hexaploid Persimmon
Cited by: 7
Author(s): Kanae Masuda, Naoko Fujita, Ho Wen Yang, Koichiro Ushijima, Yasutaka Kubo, Ryutaro Tao, Takashi Akagi
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00993

Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?
Cited by: 14
Author(s): Zhiguang Qiu, Juntao Wang, Manuel Delgado‐Baquerizo, Pankaj Trivedi, Eleonora Egidi, Yi-Min Chen, Haiyang Zhang, Brajesh K. Singh
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2020.588739

Temperature Shift Between Vineyards Modulates Berry Phenology and Primary Metabolism in a Varietal Collection of Wine Grapevine
Cited by: 16
Author(s): Kelem Gashu, Noga Sikron Persi, Elyashiv Drori, Eran Harcavi, Nurit Agam, Amnon Bustan, Aaron Fait
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2018.00874

Differential Effects of Climate Warming on the Nectar Secretion of Early- and Late-Flowering Mediterranean Plants
Cited by: 47
Author(s): Krista Takkis, Thomas Tscheulin, Theodora Petanidou
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2020.00574

Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation
Cited by: 6
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, Patrício Manque, Luisa Bascuñán‐Godoy, León A. Bravo
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2017.01465

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China
Cited by: 28
Author(s): Caili Sun, Zongzheng Chai, Guobin Liu, Sha Xue
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2021.628960

Responses of Maize Internode to Water Deficit Are Different at the Biochemical and Histological Levels
Cited by: 2
Author(s): Fadi El Hage, Laëtitia Virlouvet, Paul-Louis Lopez-Marnet, Yves Griveau, Marie‐Pierre Jacquemot, Sylvie Coursol, Valérie Méchin, Matthieu Reymond
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.716750

Differentially Amplified Repetitive Sequences Among Aegilops tauschii Subspecies and Genotypes
Cited by: 3
Author(s): Rahman Ebrahimzadegan, Fatemeh Orooji, Pengtao Ma, Ghader Mirzaghaderi
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyt.2021.617997

Multisite Comparison of MRI Defacing Software Across Multiple Cohorts
Cited by: 25
Author(s): Athena Theyers, Mojdeh Zamyadi, Mark F. O’Reilly, Robert Bartha, Sean Symons, Glenda MacQueen, Stefanie Hassel, Jason P. Lerch, Evdokia Anagnostou, Raymond W. Lam, Benício N. Frey, Roumen Milev, Daniel J. Müller, Sidney H. Kennedy, Christopher J. Scott, Stephen C. Strother, Stephen R. Arnott
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyt.2020.00052

Lower Serum Uric Acid Is Associated With Post-Stroke Depression at Discharge
Cited by: 14
Author(s): Li Guo, Jinfeng Miao, Wenzhe Sun, Xiaoyan Song, Yan Lan, Xin Zhao, Xiuli Qiu, Chenyan Zhang, Zhou Zhu, Suiqiang Zhu
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2021.705668

Spoken Word Segmentation in First and Second Language: When ERP and Behavioral Measures Diverge
Cited by: 2
Author(s): Annie C. Gilbert, Jasmine G. Lee, Kristina Coulter, Max Wolpert, Shanna Kousaie, Vincent L. Gracco, Denise Klein, Debra Titone, Natalie A. Phillips, Shari R. Baum
Software Mentions: 4
Published: almost 5 years ago

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