cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41438-021-00465-7

Genetic characterization of an almond germplasm collection and volatilome profiling of raw and roasted kernels
Cited by: 10
Author(s): Mario Di Guardo, Brian Farneti, Iuliia Khomenko, Giulia Modica, A. Mosca, Gaetano Distefano, Luca Bianco, Michela Troggio, Francesco Sottile, Stefano La Malfa, Franco Biasioli, Alessandra Gentile
Software Mentions: 5
Published: over 5 years ago

10.1186/s12870-021-03151-x

Derived woodiness and annual habit evolved in African umbellifers as alternative solutions for coping with drought
Cited by: 2
Author(s): Kamil E. Frankiewicz, Łukasz Banasiak, Alexei A. Oskolski, A.R. Magee, Mohammad Alsarraf, Paulina Trzeciak, Krzysztof Spalik
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41438-019-0146-2

Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard
Cited by: 31
Author(s): Zoë Migicovsky, Zachary N. Harris, Laura L. Klein, Mao Li, Adam McDermaid, Daniel H. Chitwood, Anne Fennell, László Kovács, Misha T. Kwasniewski, Jason P. Londo, Qin Ma, Allison J. Miller
Software Mentions: 5
Published: about 7 years ago

10.1051/parasite/2020062

Increasing importance of anthelmintic resistance in European livestock: creation and meta-analysis of an open database
Cited by: 89
Author(s): Hannah Rose Vineer, Eric R. Morgan, Hubertus Hertzberg, David J. Bartley, Antonio Bosco, Johannes Charlier, Christophe Chartier, Edwin Claerebout, Theo de Waal, Guy Hendrickx, Barbara Hinney, Johan Höglund, Jožica Ježek, Martin Kašný, Orla M. Keane, María Martínez‐Valladares, Teresa Letra Mateus, Jennifer McIntyre, Marcin Mickiewicz, Ana María Muñoz, Clare J Phythian, H.W. Ploeger, Aleksandra Vergles Rataj, Philip Skuce, Stanislav Simin, Smaragda Sotiraki, Marina Spînu, Snorre Stuen, Stig Milan Thamsborg, Jaroslav Vadlejch, Marián Várady, Georg von Samson‐Himmelstjerna, Laura Rinaldi
Software Mentions: 5
Published: over 6 years ago

10.1017/S0031182019001628

Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity
Cited by: 7
Author(s): Sharon A. Lynch, S. Lepée-Rivero, Rochelle M. Kelly, EA Quinn, Andy Coghlan, B. Bookelaar, E. Morgan, John A. Finarelli, Jens Carlsson, Sarah C. Culloty
Software Mentions: 5
Published: over 6 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response toTheileria parvaand other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: about 12 years ago

10.1186/s13104-016-2331-9

Differential correlation for sequencing data
Cited by: 18
Author(s): Charlotte Siska, Katerina Kechris
Software Mentions: 5
Published: over 9 years ago

10.1186/s13073-017-0492-3

Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
Cited by: 63
Author(s): Xun Zhu, Thomas Wolfgruber, Austin Tasato, Cédric Arisdakessian, David Garmire, Lana X. Garmire
Software Mentions: 5
Published: over 8 years ago

10.18632/oncotarget.23206

Coagulation cascade and complement system in systemic lupus erythematosus
Cited by: 19
Author(s): Yan Liang, Shangbo Xie, Changhao Wu, Yuan Hu, Qin Zhang, Si Li, Yin‐Guang Fan, Rui‐Xue Leng, Hai‐Feng Pan, Huabao Xiong, Dong‐Qing Ye
Software Mentions: 5
Published: over 8 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: about 6 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 6 years ago

10.1093/gbe/evz280

Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae)
Cited by: 2
Author(s): Laramie L. Lindsey, Roy N. Platt, C. Douglas Phillips, David A. Ray, Robert D. Bradley
Software Mentions: 5
Published: over 6 years ago

10.1093/gbe/evz150

Evolution of Phototransduction Genes in Lepidoptera
Cited by: 26
Author(s): Aide Macias-Muñoz, Aline G. Rangel Olguin, Adriana D. Briscoe
Software Mentions: 5
Published: almost 7 years ago

10.1093/gbe/evz108

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish
Cited by: 8
Author(s): Carmelo Fruciano, Axel Meyer, Paolo Franchini
Software Mentions: 5
Published: about 7 years ago

10.1093/gbe/evx269

A Genome Resequencing-Based Genetic Map Reveals the Recombination Landscape of an Outbred Parasitic Nematode in the Presence of Polyploidy and Polyandry
Cited by: 53
Author(s): Stephen R. Doyle, Roz Laing, David J. Bartley, Collette Britton, Umer Chaudhry, John S. Gilleard, Nancy Holroyd, Barbara K. Mable, Kirsty Maitland, Alison A. Morrison, Andy Tait, Alan S. Tracey, Matthew Berriman, Eileen Devaney, James A. Cotton, Neil Sargison
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-021-02463-3

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age
Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.lmot.2018.07.003

A re-examination of responding on ratio and regulated-probability interval schedules
Cited by: 6
Author(s): Omar David Pérez, Michael R. F. Aitken, Amy Milton, Anthony Dickinson
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-021-02446-4

Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea
Cited by: 20
Author(s): Antoine Porquier, Constance Tisserant, F. Salinas, Carla Glassl, Lucas E. Wange, Wolfgang Enard, Andreas Hauser, Matthias Hahn, Arne Weiberg
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-021-02336-9

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
Cited by: 56
Author(s): Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fédrigo, Shan-Estelle Brown, Marco Rosario Capodiferro, Farooq Omar Maan Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan S. Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vânia Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene W. Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-020-02148-3

Variation around the dominant viral genome sequence contributes to viral load and outcome in patients with Ebola virus disease
Cited by: 17
Author(s): Xiaofeng Dong, Jordana Muñoz-Basagoiti, Natasha Y. Rickett, Georgios Pollakis, William A. Paxton, Stephan Günther, Romy Kerber, Lisa F. P. Ng, Michael J. Elmore, N’Faly Magassouba, Miles W. Carroll, David A. Matthews, Julian A. Hiscox
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13756-018-0336-y

Estimating the burden of antimicrobial resistance: a systematic literature review
Cited by: 318
Author(s): Nichola R. Naylor, Rifat Atun, Nina Zhu, Kavian Kulasabanathan, Sachin Silva, Anuja Chatterjee, Gwenan M. Knight, Julie V. Robotham
Software Mentions: 5
Published: about 8 years ago

10.1186/s13059-020-02067-3

Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II, and Pol III
Cited by: 81
Author(s): Yongpeng Jiang, Jinfeng Huang, Kehuan Lun, Boyuan Li, Haonan Zheng, Yuanjun Li, Rong Zhou, Duan Wenjia, Chenlu Wang, Yuanqing Feng, Huilu Yao, Cheng Li, Ji Xiong
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13059-020-02054-8

CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data
Cited by: 14
Author(s): Zijian Ni, Shuyang Chen, Jared Brown, Christina Kendziorski
Software Mentions: 5
Published: about 6 years ago

10.1186/s13059-019-1906-x

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
Cited by: 257
Author(s): Elo Madissoon, Anna Wilbrey-Clark, Ricardo J. Miragaia, Kourosh Saeb‐Parsy, Krishnaa Mahbubani, Nikitas Georgakopoulos, Philippa Harding, Krzysztof Polański, Ni Huang, Karol Nowicki-Osuch, Rebecca C. Fitzgerald, Kevin Loudon, John R. Ferdinand, Menna R. Clatworthy, Anthi Tsingene, Stijn van Dongen, Monika Dąbrowska, Minal Patel, Michael J T Stubbington, Sarah A. Teichmann, Oliver Stegle, Kerstin B. Meyer
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-019-1856-3

NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION
Cited by: 47
Author(s): Arne De Roeck, Wouter De Coster, Liene Bossaerts, Rita Cacace, Tim De Pooter, Jasper Van Dongen, Svenn D’Hert, Peter De Rijk, Mojca Stražišar, Christine Van Broeckhoven, Kristel Sleegers
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-017-1318-8

Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage
Cited by: 94
Author(s): Péter István Kulcsár, András Tálas, Krisztina Huszár, Zoltán Ligeti, Eszter Tóth, Nóra Weinhardt, Elfrieda Fodor, Ervin Welker
Software Mentions: 5
Published: over 8 years ago

10.1093/aobpla/plx010

Antibiotics impact plant traits, even at small concentrations
Cited by: 69
Author(s): Vanessa Minden, Andrea Deloy, Anna Martina Volkert, Sara D. Leonhardt, Gesine Pufal
Software Mentions: 5
Published: over 9 years ago

10.1186/s13059-018-1490-5

A comparative study of endoderm differentiation in humans and chimpanzees
Cited by: 31
Author(s): Lauren E. Blake, Samantha M. Thomas, John Blischak, Chiaowen Joyce Hsiao, Claudia Chavarria, Marsha Myrthil, Yoav Gilad, Bryan J. Pavlovic
Software Mentions: 5
Published: over 7 years ago

10.18632/oncotarget.23423

Signature of survival: a 18F-FDG PET based whole-liver radiomic analysis predicts survival after 90Y-TARE for hepatocellular carcinoma
Cited by: 39
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Mario Jreige, Marie Nicod Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge, Niklaus Schaefer
Software Mentions: 5
Published: over 8 years ago

10.18632/oncotarget.23344

APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response
Cited by: 83
Author(s): Alexander Glaser, Damiano Fantini, Yiduo Wang, Yu Yu, Kalen Rimar, Joseph R. Podojil, Stephen D. Miller, Joshua J. Meeks
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-015-0685-2

Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells
Cited by: 64
Author(s): Chi Kong Li, Hongzheng Dai, Suzanne N. Martos, Beisi Xu, Yang Gao, Li Teng, Guangjing Zhu, Dustin E. Schones, Zhibin Wang
Software Mentions: 5
Published: about 11 years ago

10.1186/s40168-018-0586-1

Association of bovine major histocompatibility complex (BoLA) gene polymorphism with colostrum and milk microbiota of dairy cows during the first week of lactation
Cited by: 34
Author(s): Hooman Derakhshani, J.C. Plaizier, Jeroen De Buck, Herman W. Barkema, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-014-0511-2

A genomic and evolutionary approach reveals non-genetic drug resistance in malaria
Cited by: 34
Author(s): Jonathan D. Herman, Daniel P. Rice, Ulf Ribacke, Jacob Silterra, Amy Deik, Eli L. Moss, Kate M Broadbent, Daniel E. Neafsey, Michael M. Desai, Clary B. Clish, Ralph Mazitschek, Dyann F. Wirth
Software Mentions: 5
Published: over 11 years ago

10.1128/AEM.00929-21

Sea-Ice Bacteria Halomonas sp. Strain 363 and Paracoccus sp. Strain 392 Produce Multiple Types of Poly-3-Hydroxyalkaonoic Acid (PHA) Storage Polymers at Low Temperature
Cited by: 7
Author(s): Eeva Eronen-Rasimus, Jenni Hultman, Trần Ngọc Hải, Igor Stelmach Pessi, Eric S. Collins, Shaela Wright, Pia Laine, Sirja Viitamäki, Christina Lyra, David N. Thomas, Peter N. Golyshin, Anne-Mari Luhtanen, Harri Kuosa, Hermanni Kaartokallio
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: about 5 years ago

10.1590/1678-4685-GMB-2019-0270

Methodological differences can affect sequencing depth with a possible impact on the accuracy of genetic diagnosis
Cited by: 2
Author(s): Murilo Guimarães Borges, Cristiane S. Rocha, Benilton Carvalho, Íscia Lopes‐Cendes
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2019.02154

Sport and Exercise Psychology Studies in Brazil: Performance or Health?
Cited by: 4
Author(s): Lenamar Fiorese Vieira, André Luíz Félix Rodacki, Nayara Malheiros Caruzzo, Caio Rosas Moreira, Andressa Ribeiro Contreira, Aline Mendes de Lima, Leonardo de Sousa Fortes, João Ricardo Nickenig Vissoci, Joice Mara Facco Stefanello
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpsyg.2021.719596

‘I Get High With a Little Help From My Friends’ - How Raves Can Invoke Identity Fusion and Lasting Co-operation via Transformative Experiences
Cited by: 7
Author(s): Martha Newson, Ragini Khurana, Freya Cazorla, Valerie van Mulukom
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13104-018-3221-0

Proteome-wide comparison between the amino acid composition of domains and linkers
Cited by: 19
Author(s): Daniel C. Brune, Miguel A. Andrade‐Navarro, Pablo Mier
Software Mentions: 5
Published: over 8 years ago

10.3389/fpsyg.2020.00178

Within-Family Environment and Cross-Fostering Stress Affect Behavior and Physiology in Wild Cavies (Cavia aperea)
Cited by: 0
Author(s): Sabine Kraus, Fritz Trillmich, Anja Guenther
Software Mentions: 5
Published: over 6 years ago

10.1007/s00442-021-04977-w

Bank vole alarm pheromone chemistry and effects in the field
Cited by: 1
Author(s): Thorbjörn Sievert, Hannu Ylönen, James D. Blande, Amélie Saunier, Dave van der Hulst, Olga Ylönen, Marko Haapakoski
Software Mentions: 5
Published: about 5 years ago

10.1186/s13071-016-1484-7

Pilot longitudinal mosquito surveillance study in the Danube Delta Biosphere Reserve and the first reports of Anopheles algeriensis Theobald, 1903 and Aedes hungaricus Mihályi, 1955 for Romania
Cited by: 17
Author(s): Edina Török, Alexandru Tomazatos, Dániel Cadar, Cintia Horváth, Lujza Keresztes, Stéphanie Jansen, Norbert Becker, Achim Kaiser, Octavian Popescu, Jonas Schmidt‐Chanasit, Hanna Jöst, Renke Lühken
Software Mentions: 5
Published: about 10 years ago

10.3389/fpsyg.2021.667173

Dimensions and Clusters of Aesthetic Emotions: A Semantic Profile Analysis
Cited by: 4
Author(s): Ursula Beermann, Georg Hosoya, Ines Schindler, Klaus R. Scherer, Michael Eid, Valentin Wagner, Winfried Menninghaus
Software Mentions: 5
Published: about 5 years ago

10.1128/AEM.02012-16

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils
Cited by: 58
Author(s): Grace Pold, Andrew F. Billings, Jeffrey L. Blanchard, Daniel Burkhardt, Serita D. Frey, Jerry M. Melillo, Julia Schnabel, Linda T. A. van Diepen, Kristen M. DeAngelis
Software Mentions: 5
Published: over 9 years ago

10.3389/fpls.2019.00849

Potential Elevation Shift of the European Beech Stands (Fagus sylvatica L.) in Serbia
Cited by: 11
Author(s): Lazar Pavlović, Dejan Stojanović, Emina Mladenović, Milena Lakićević, Saša Orlović
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpls.2021.733899

Discovery of the REN11 Locus From Vitis aestivalis for Stable Resistance to Grapevine Powdery Mildew in a Family Segregating for Several Unstable and Tissue-Specific Quantitative Resistance Loci
Cited by: 22
Author(s): Avinash Karn, Cheng Zou, Siraprapa Brooks, Jonathan Fresnedo-Ramírez, F. Mlikota Gabler, Qi Sun, David W. Ramming, Rachel P. Naegele, Craig A. Ledbetter, Lance Cadle‐Davidson
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2019.01411

Partitioning of Water Between Differently Sized Shrubs and Potential Groundwater Recharge in a Semiarid Savanna in Namibia
Cited by: 12
Author(s): Katja Geißler, Jessica Heblack, Shoopala Uugulu, Heike Wanke, Niels Blaum
Software Mentions: 5
Published: over 6 years ago

10.1002/cam4.3959

IBSP, a potential recurrence biomarker, promotes the progression of colorectal cancer via Fyn/β‐catenin signaling pathway
Cited by: 8
Author(s): Cheng Yan, Ying Qin, Mengmeng Dai, Liping Liu, Yicheng Ni, Qiao Sun, Lulu Li, Yaoyao Zhou, Cheng Qiu, Yuyang Jiang
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2020.00022

Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences
Cited by: 50
Author(s): Sang Hyun Kim, Sangjin Jo, Se Hwan Cheon, Min Jung Joo, Ja Ram Hong, Myounghai Kwak, Ki Joong Kim
Software Mentions: 5
Published: over 6 years ago

10.18632/oncotarget.19662

Gene expression and molecular pathway activation signatures ofMYCN-amplified neuroblastomas
Cited by: 27
Author(s): Ivan Petrov, Maria Suntsova, Elena Tarasovna Ilnitskaya, S. A. Roumiantsev, Maxim Sorokin, Andrew Garazha, Pavel Spirin, Timofey Lebedev, Нуршат Гайфуллин, Sergey Larin, Olga Kovalchuk, Д. М. Коновалов, Vladimir Prassolov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 5
Published: almost 9 years ago

10.3389/fpls.2020.01005

Similar Seed Composition Phenotypes Are Observed From CRISPR-Generated In-Frame and Knockout Alleles of a Soybean KASI Ortholog
Cited by: 8
Author(s): Kamaldeep S. Virdi, Madison Spencer, Adrian O. Stec, Yer Xiong, Ryan Merry, Gary J. Muehlbauer, Robert M. Stupar
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13075-015-0544-2

Transcriptome analysis of ageing in uninjured human Achilles tendon
Cited by: 61
Author(s): Mandy J. Peffers, Yongxiang Fang, Kathleen Cheung, Tim Koh Jia Wei, Peter Clegg, Helen L. Birch
Software Mentions: 5
Published: over 11 years ago

10.3389/fpls.2021.621561

Transcriptome Analysis Reveals Photoperiod-Associated Genes Expressed in Rice Anthers
Cited by: 14
Author(s): Shiyu Sun, Duoxiang Wang, Jingbin Li, Yaqi Lei, Gang Li, Wenguo Cai, Xiangxiang Zhao, Wanqi Liang, Dabing Zhang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13071-020-04424-4

Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Cited by: 3
Author(s): Maksim A. Nesterenko, Viktor V. Starunov, Sergei V. Shchenkov, Anna R. Maslova, Sofia Denisova, Andrey I. Granovich, Andrej A. Dobrovolskij, Konstantin Khalturin
Software Mentions: 5
Published: over 5 years ago

10.3389/fphys.2017.00661

The Gly16 Allele of the G16R Single Nucleotide Polymorphism in the β2-Adrenergic Receptor Gene Augments the Glycemic Response to Adrenaline in Humans
Cited by: 6
Author(s): Kim Zillo Rokamp, Jonatan Myrup Staalsø, Morten Zaar, P Rasmussen, Lonnie G. Petersen, Rikke Vibeke Nielsen, Niels H. Secher, Niels Vidiendal Olsen, Henning Bay Nielsen
Software Mentions: 5
Published: almost 9 years ago

10.3389/fphys.2019.01305

The Regulation of Ruminal Short-Chain Fatty Acids on the Functions of Rumen Barriers
Cited by: 28
Author(s): Hong Shen, Zhihui Xu, Zanming Shen, Zhongyan Lu
Software Mentions: 5
Published: over 6 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: over 8 years ago

10.3758/s13414-020-02007-0

Oculomotor capture by search-irrelevant features in visual working memory: on the crucial role of target–distractor similarity
Cited by: 4
Author(s): Rebecca M. Foerster, Werner X. Schneider
Software Mentions: 5
Published: over 6 years ago

10.3389/fphar.2020.592116

Pros and Cons of Aspirin for the Primary Prevention of Cardiovascular Events: A Secondary Study of Trial Sequential Analysis
Cited by: 8
Author(s): Binghao Zhao, Qian Wu, Li Wang, Chen Di Liao, Dong Yan, Jianpeng Xu, Yiping Wei
Software Mentions: 5
Published: over 5 years ago

10.3389/fphar.2018.00305

Frequency of CYP2D6 Alleles Including Structural Variants in the United States
Cited by: 81
Author(s): Andria L. Del Tredici, Alka Malhotra, Matthew Dedek, Frank G. Espin, Daniel E. Roach, Guang dan Zhu, Joseph R. Voland, Tanya A. Moreno
Software Mentions: 5
Published: about 8 years ago

10.3389/fped.2020.00052

A Multidisciplinary Intervention in Childhood Obesity Acutely Improves Insulin Resistance and Inflammatory Markers Independent From Body Composition
Cited by: 7
Author(s): Ernst Mayerhofer, Franz Ratzinger, Nina Elvira Kienreich, Annika Stiel, Nadine Witzeneder, Eva Schrefl, Georg Greiner, Christoph Wegscheider, Irene Graf, Klaus G. Schmetterer, Rodrig Marculescu, Thomas Szekeres, Thomas Perkmann, Martina Fondi, Oswald Wagner, Harald Esterbauer, Matthias Mayerhofer, Stefana Holocher-Ertl, Claudia Wojnarowski, Gregor Hoermann
Software Mentions: 5
Published: over 6 years ago

10.3389/fped.2021.709765

Delivery Modality Affect Neonatal Levels of Inflammation, Stress, and Growth Factors
Cited by: 2
Author(s): Pia Kiilerich, Rikke Cortes, Ulrik Lausten-Thomsen, Nis Borbye‐Lorenzen, Solveig Holmgaard, Kristin Skogstrand
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.01088

MMP25 Regulates Immune Infiltration Level and Survival Outcome in Head and Neck Cancer Patients
Cited by: 8
Author(s): Yujie Liang, Chenyu Guan, Kan Li, Guanghui Zheng, Tao Wang, Sien Zhang, Guiqing Liao
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-020-03902-x

recoup: flexible and versatile signal visualization from next generation sequencing
Cited by: 5
Author(s): Panagiotis Moulos
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-12-104

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Cited by: 50
Author(s): Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
Software Mentions: 5
Published: about 15 years ago

10.1186/s12859-021-04154-z

Tamock: simulation of habitat-specific benchmark data in metagenomics
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Author(s): Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2019.01083

LCTL Is a Prognostic Biomarker and Correlates With Stromal and Immune Infiltration in Gliomas
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Author(s): Jun Su, Qianquan Ma, Wenyong Long, Hailin Tang, Changwu Wu, Mei Luo, Xiangyu Wang, Kai Xiao, Li Yang, Qian Xiao, Chi Zhang, Haoyu Li, Qing Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.637193

Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
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Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.643503

Transcriptome Analyses Identify a Metabolic Gene Signature Indicative of Antitumor Immunosuppression of EGFR Wild Type Lung Cancers With Low PD-L1 Expression
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Author(s): Min Wang, Jie Zhu, Fang Zhao, Jiani Xiao
Software Mentions: 5
Published: almost 5 years ago

10.3390/pathogens9070592

Mycobacterium bovis Population Structure in Cattle and Local Badgers: Co-Localisation and Variation by Farm Type
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Author(s): Georgina Milne, Adrian Allen, Jordon Graham, Raymond Kirke, Carl McCormick, Eleanor Presho, Robin Skuce, Andrew Byrne
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-021-04050-6

Dualmarker: a flexible toolset for exploratory analysis of combinatorial dual biomarkers for clinical efficacy
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Author(s): Xiaopeng Ma, Ruiqi Huang, Xikun Wu, Pei Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fnins.2020.620723

Spatiotemporal Processing of Bimodal Odor Lateralization in the Brain Using Electroencephalography Microstates and Source Localization
Cited by: 2
Author(s): Christine Ida Hucke, Rebekka Heinen, Marlene Pacharra, Edmund Wascher, Christoph van Thriel
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens9120997

A Paradox in Bacterial Pathogenesis: Activation of the Local Macrophage Inflammasome Is Required for Virulence of Streptococcus uberis
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Author(s): Nathan Archer, Sharon A. Egan, Tracey J. Coffey, Richard D. Emes, Maria Filippa Addis, Philip N. Ward, Adam Blanchard, James A. Leigh
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04161-0

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
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Author(s): Aimeric Bruno, Jean‐Marc Aury, Stéfan Engelen
Software Mentions: 5
Published: about 5 years ago

10.3389/fneur.2020.546744

LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan Inspection
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Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: over 5 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: about 7 years ago

10.1186/s12859-018-2252-9

npInv: accurate detection and genotyping of inversions using long read sub-alignment
Cited by: 26
Author(s): Haojing Shao, Devika Ganesamoorthy, Tânia Duarte, Minh Duc Cao, Clive Hoggart, Lachlan Coin
Software Mentions: 5
Published: almost 8 years ago

10.3390/pathogens10050499

Plasmodiophora brassicae Inoculum Density and Spatial Patterns at the Field Level and Relation to Soil Characteristics
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Author(s): Andrea Botero-Ramírez, Sheau‐Fang Hwang, Stephen E. Strelkov
Software Mentions: 5
Published: about 5 years ago

10.1002/cam4.3481

Integrated genomic analysis identifies a genetic mutation model predicting response to immune checkpoint inhibitors in melanoma
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Author(s): Junjie Jiang, Yongfeng Ding, Mengjie Wu, Yanyan Chen, Xiadong Lyu, Jun Lü, Haiyong Wang, Lisong Teng
Software Mentions: 5
Published: almost 6 years ago

10.3389/fneur.2016.00238

A Review of the Segmental Diameter of the Healthy Human Spinal Cord
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Author(s): Arvid Frostell, Ramil Hakim, Eric Peter Thelin, Per Mattsson, Mikael Svensson
Software Mentions: 5
Published: over 9 years ago

10.3389/fneur.2019.00103

Vocational Rehabilitation in Mild Traumatic Brain Injury: Supporting Return to Work and Daily Life Functioning
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Author(s): Frederik Lehman Dornonville de la Cour, Morten Arendt Rasmussen, Eva Meldal Foged, Line Svenning Jensen, Trine Schow
Software Mentions: 5
Published: over 7 years ago

10.3389/fninf.2013.00013

White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation
Cited by: 4
Author(s): Are Losnegård, Arvid Lundervold, Erlend Hodneland
Software Mentions: 5
Published: over 13 years ago

10.3389/fncir.2019.00032

A Novel Type of Neuron Within the Dorsal Striatum
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Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 5
Published: about 7 years ago

10.3389/fmolb.2021.621232

Six Metabolism Related mRNAs Predict the Prognosis of Patients With Hepatocellular Carcinoma
Cited by: 6
Author(s): Xiwen Wu, Tian Lan, Muqi Li, Junfeng Liu, Xukun Wu, Shunli Shen, Wei Chen, Baogang Peng
Software Mentions: 5
Published: over 5 years ago

10.3389/fmolb.2020.576298

Identification of Immune-Related Genes MSR1 and TLR7 in Relation to Macrophage and Type-2 T-Helper Cells in Osteosarcoma Tumor Micro-Environments as Anti-metastasis Signatures
Cited by: 10
Author(s): Zhiyu Chen, Huanhuan Huang, Yang Wang, Fangbiao Zhan, Zhengxue Quan
Software Mentions: 5
Published: over 5 years ago

10.3389/fmolb.2021.633299

Identification of Lymph Node Metastasis–Related Key Genes and Prognostic Risk Model in Bladder Cancer by Co-Expression Analysis
Cited by: 8
Author(s): Cheng Luo, Bin Huang, Yukun Wu, Yadong Xu, Wei Ou, Junxing Chen, Lingwu Chen
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmolb.2019.00115

Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil
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Author(s): Vadakattu V. S. R. Gupta, Bangzhou Zhang, C. Ryan Penton, Julian Yu, James M. Tiedje
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.01429

Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient
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Author(s): Nadine Praeg, Harald Pauli, Paul Illmer
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12889-021-11760-2

Brazilian Longitudinal Study of Adult Health (ELSA-Brasil) participant’s profile regarding self-rated health: a multiple correspondence analysis
Cited by: 6
Author(s): Thaís Lopes de Oliveira, Raquel Vasconcellos Carvalhaes de Oliveira, Rosane Härter Griep, Arlinda B. Moreno, Maria da Conceição Chagas de Almeida, Ylva B. Almquist, Maria de Jesus Mendes da Fonseca
Software Mentions: 5
Published: over 4 years ago

10.1002/cam4.3343

Identification of a novel prognostic DNA methylation signature for lung adenocarcinoma based on consensus clustering method
Cited by: 5
Author(s): Qidong Cai, Boxue He, Hui Xie, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Zhenyu Zhao, Xiang Wang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2018.01734

Integrating Non-human Primate, Human, and Mathematical Studies to Determine the Influence of BCG Timing on H56 Vaccine Outcomes
Cited by: 8
Author(s): Louis R. Joslyn, Elsje Pienaar, Robert M. DiFazio, Sara Suliman, Benjamin M. Kagina, JoAnne L. Flynn, Thomas J. Scriba, Jennifer J. Linderman, Denise E. Kirschner
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2020.587558

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function
Cited by: 18
Author(s): Hongjin Liu, Linyong Hu, Xueping Han, Na Zhao, Tianwei Xu, Li Ma, Xungang Wang, Xiaoling Zhang, Shenghong Kang, Xinquan Zhao, Shixiao Xu
Software Mentions: 5
Published: over 5 years ago

10.1186/s12918-015-0197-4

A correction method for systematic error in 1H-NMR time-course data validated through stochastic cell culture simulation
Cited by: 6
Author(s): Stanislav Sokolenko, Marc G. Aucoin
Software Mentions: 5
Published: almost 11 years ago

10.3389/fmicb.2021.691296

Comparison of Two Aspergillus oryzae Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism
Cited by: 7
Author(s): Katherine Chacón-Vargas, Colin O McCarthy, Dasol Choi, Long Wang, Jae‐Hyuk Yu, John G. Gibbons
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2020.00266

Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models
Cited by: 7
Author(s): Nabil Hanna, Sébastien Kicka, Gianpaolo Chiriano, Christopher F. Harrison, Hajer Ouertatani Sakouhi, Valentin Trofimov, Agata Kranjc, Jahn Nitschke, Marco Pagni, Pierre Cosson, Hubert Hilbi, Léonardo Scapozza, Thierry Soldati
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.572504

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid
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Author(s): Montserrat Saladié, José A. Caparrós-Martín, Ana Patrícia, Peter Wark, Stephen M. Stick, Fergal O’Gara
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens10010041

Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification
Cited by: 5
Author(s): Marcos Godoy, Daniel A. Medina, Rudy Suárez, Sandro L. Valenzuela, Jaime Romero, Molly J. T. Kibenge, Yingwei Wang, Frederick S. B. Kibenge
Software Mentions: 5
Published: over 5 years ago

10.1002/cam4.1802

Marital status and survival in patients with soft tissue sarcoma: A population‐based, propensity‐matched study
Cited by: 21
Author(s): Shilong Zhang, Wen-Rong Wang, Ze‐juan Liu, Zhiming Wang
Software Mentions: 5
Published: over 7 years ago

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