cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40462-020-00223-9

Behavioral modifications by a large-northern herbivore to mitigate warming conditions
Cited by: 7
Author(s): Jyoti S. Jennewein, Mark Hebblewhite, Peter J. Mahoney, Sophie L. Gilbert, Arjan J. H. Meddens, Natalie T. Boelman, Kyle Joly, Kimberly Jones, Kalin A. Kellie, Scott M. Brainerd, Lee A. Vierling, Jan U. H. Eitel
Software Mentions: 5
Published: almost 6 years ago

10.1007/s12550-021-00434-y

Effects of temperature and soil fauna on the reduction and leaching of deoxynivalenol and zearalenone from Fusarium graminearum-infected maize stubbles
Cited by: 3
Author(s): Friederike Meyer-Wolfarth, Elisabeth Oldenburg, Torsten Meiners, Katherine Muñoz, Stefan Schrader
Software Mentions: 5
Published: about 5 years ago

10.7150/ijms.39056

Identification of gene expression profiles and immune cell infiltration signatures between low and high tumor mutation burden groups in bladder cancer
Cited by: 33
Author(s): Zonglong Wu, Mu-Ru Wang, Qinggang Liu, Yaxiao Liu, Ke-Cheng Zhu, Lipeng Chen, Hongda Guo, Yan Li, Benkang Shi
Software Mentions: 5
Published: over 6 years ago

10.1051/parasite/2020062

Increasing importance of anthelmintic resistance in European livestock: creation and meta-analysis of an open database
Cited by: 89
Author(s): Hannah Rose Vineer, Eric R. Morgan, Hubertus Hertzberg, David J. Bartley, Antonio Bosco, Johannes Charlier, Christophe Chartier, Edwin Claerebout, Theo de Waal, Guy Hendrickx, Barbara Hinney, Johan Höglund, Jožica Ježek, Martin Kašný, Orla M. Keane, María Martínez‐Valladares, Teresa Letra Mateus, Jennifer McIntyre, Marcin Mickiewicz, Ana María Muñoz, Clare J Phythian, H.W. Ploeger, Aleksandra Vergles Rataj, Philip Skuce, Stanislav Simin, Smaragda Sotiraki, Marina Spînu, Snorre Stuen, Stig Milan Thamsborg, Jaroslav Vadlejch, Marián Várady, Georg von Samson‐Himmelstjerna, Laura Rinaldi
Software Mentions: 5
Published: over 6 years ago

10.1017/S0031182019001628

Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity
Cited by: 7
Author(s): Sharon A. Lynch, S. Lepée-Rivero, Rochelle M. Kelly, EA Quinn, Andy Coghlan, B. Bookelaar, E. Morgan, John A. Finarelli, Jens Carlsson, Sarah C. Culloty
Software Mentions: 5
Published: almost 7 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response toTheileria parvaand other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: over 12 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: about 6 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 6 years ago

10.3390/antibiotics9120867

Impact and Sustainability of Antibiotic Stewardship in Pediatric Emergency Departments: Why Persistence Is the Key to Success
Cited by: 4
Author(s): Elisa Barbieri, Maia De Luca, Marta Minute, Carmen D’Amore, Marta Luisa Ciofi degli Atti, Stefano Martelossi, Carlo Giaquinto, Liviana Da Dalt, Theoklis E. Zaoutis, Daniele Donà
Software Mentions: 5
Published: over 5 years ago

10.1186/s13071-016-1484-7

Pilot longitudinal mosquito surveillance study in the Danube Delta Biosphere Reserve and the first reports of Anopheles algeriensis Theobald, 1903 and Aedes hungaricus Mihályi, 1955 for Romania
Cited by: 17
Author(s): Edina Török, Alexandru Tomazatos, Dániel Cadar, Cintia Horváth, Lujza Keresztes, Stéphanie Jansen, Norbert Becker, Achim Kaiser, Octavian Popescu, Jonas Schmidt‐Chanasit, Hanna Jöst, Renke Lühken
Software Mentions: 5
Published: over 10 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: about 8 years ago

10.1186/s13071-020-04424-4

Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Cited by: 3
Author(s): Maksim A. Nesterenko, Viktor V. Starunov, Sergei V. Shchenkov, Anna R. Maslova, Sofia Denisova, Andrey I. Granovich, Andrej A. Dobrovolskij, Konstantin Khalturin
Software Mentions: 5
Published: almost 6 years ago

10.22074/IJFS.2020.134614

Anti-Müllerian Hormone Predictive Levels to Determine The Likelihood of Ovarian Hyper-Response in Infertile Women with Polycystic Ovarian Morphology.
Cited by: 2
Author(s): Azadeh Akbari Sene, Mahnaz Ashrafi, Nasim Alaghmand-Fard, Neda Mohammadi, Mona Mortezapour Alisaraie, Ahad Alizadeh
Software Mentions: 5
Published: over 5 years ago

10.1155/2018/7351902

Elevated and Correlated Expressions of miR-24, miR-30d, miR-146a, and SFRP-4 in Human Abdominal Adipose Tissue Play a Role in Adiposity and Insulin Resistance
Cited by: 32
Author(s): Yury O. Nunez Lopez, Gabriella Garufi, Magdalena Pasarica, Attila A. Seyhan
Software Mentions: 5
Published: over 8 years ago

10.3390/pathogens9070592

Mycobacterium bovis Population Structure in Cattle and Local Badgers: Co-Localisation and Variation by Farm Type
Cited by: 6
Author(s): Georgina Milne, Adrian Allen, Jordon Graham, Raymond Kirke, Carl McCormick, Eleanor Presho, Robin Skuce, Andrew Byrne
Software Mentions: 5
Published: about 6 years ago

10.3390/pathogens9120997

A Paradox in Bacterial Pathogenesis: Activation of the Local Macrophage Inflammasome Is Required for Virulence of Streptococcus uberis
Cited by: 10
Author(s): Nathan Archer, Sharon A. Egan, Tracey J. Coffey, Richard D. Emes, Maria Filippa Addis, Philip N. Ward, Adam Blanchard, James A. Leigh
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens10050499

Plasmodiophora brassicae Inoculum Density and Spatial Patterns at the Field Level and Relation to Soil Characteristics
Cited by: 7
Author(s): Andrea Botero-Ramírez, Sheau‐Fang Hwang, Stephen E. Strelkov
Software Mentions: 5
Published: over 5 years ago

10.1186/s13756-018-0336-y

Estimating the burden of antimicrobial resistance: a systematic literature review
Cited by: 318
Author(s): Nichola R. Naylor, Rifat Atun, Nina Zhu, Kavian Kulasabanathan, Sachin Silva, Anuja Chatterjee, Gwenan M. Knight, Julie V. Robotham
Software Mentions: 5
Published: over 8 years ago

10.3390/pathogens10010041

Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification
Cited by: 5
Author(s): Marcos Godoy, Daniel A. Medina, Rudy Suárez, Sandro L. Valenzuela, Jaime Romero, Molly J. T. Kibenge, Yingwei Wang, Frederick S. B. Kibenge
Software Mentions: 5
Published: over 5 years ago

10.3390/jof7040304

Marker Assisted Selection of Malic-Consuming Saccharomyces cerevisiae Strains for Winemaking. Efficiency and Limits of a QTL’s Driven Breeding Program
Cited by: 4
Author(s): Charlotte Vion, Emilien Peltier, Margaux Bernard, Maïtena Muro, Philippe Marullo
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7410

Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies
Cited by: 29
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Chetan C. Gaonkar, Roberta Piredda
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.5444

Darwin’s naturalization hypothesis does not explain the spread of nonnative weed species naturalized in México
Cited by: 0
Author(s): Judith Sánchez-Blanco, Ernesto V. Vega-Peña, Francisco J. Espinosa‐García
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.8184

Investigating the effects of management practice on mammalian co-occurrence along the West Coast of South Africa
Cited by: 2
Author(s): Deborah Jean Winterton, Nicola J. van Wilgen, Jan A. Venter
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11798

Precocious puberty in male wild boars: a possible explanation for the dramatic population increase in Germany and Europe
Cited by: 6
Author(s): Claudia Maistrelli, Hanna Hüneke, Marion Langeheine, Oliver Keuling, Ursula Siebert, Ralph Brehm
Software Mentions: 5
Published: about 5 years ago

10.3390/jof7010045

Metabarcoding of Soil Fungal Communities Associated with Alpine Field-Grown Saffron (Crocus sativus L.) Inoculated with AM Fungi
Cited by: 13
Author(s): Íris Marisa Maxaieie Victorino, Samuele Voyron, Matteo Caser, Alberto Orgiazzi, Sonia Demasi, Andrea Berruti, Valentina Scariot, Valeria Bianciotto
Software Mentions: 5
Published: over 5 years ago

10.1177/0146167220946187

The Association Between Threat and Politics Depends on the Type of Threat, the Political Domain, and the Country
Cited by: 24
Author(s): Mark J. Brandt, Felicity Mary Turner-Zwinkels, Beste Karapirinler, Florian van Leeuwen, Michael Bender, Yvette van Osch, Byron G. Adams
Software Mentions: 5
Published: about 6 years ago

10.3390/ph14020087

Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach
Cited by: 4
Author(s): Andrea Gelemanović, Tinka Vidović, Višnja Stepanić, Katarina Trajković
Software Mentions: 5
Published: over 5 years ago

10.1155/2021/5553811

Identification of Potential Biomarkers Associated with Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
Cited by: 12
Author(s): Yan Wang, Xiangyang Zhang, Min Duan, Chenguang Zhang, Ke Wang, Lili Feng, Linlin Song, Sheng Xi Wu, Xuyan Chen
Software Mentions: 5
Published: about 5 years ago

10.3390/pharmaceutics13020264

Evaluation of Current Amikacin Dosing Recommendations and Development of an Interactive Nomogram: The Role of Albumin
Cited by: 3
Author(s): Jonás Samuel Pérez-Blanco, Elena Fernández, María Victoria Martínez Calvo, José M. Lanao, Ana Martín-Suárez
Software Mentions: 5
Published: over 5 years ago

10.1002/prp2.424

Pharmacokinetics of metformin in patients with chronic kidney disease stage 4 and metformin-naïve type 2 diabetes
Cited by: 9
Author(s): Ajith Dissanayake, Mark C. Wheldon, Chris Hood
Software Mentions: 5
Published: almost 8 years ago

10.14814/phy2.13376

Male apoE*3-Leiden.CETP mice on high-fat high-cholesterol diet exhibit a biphasic dyslipidemic response, mimicking the changes in plasma lipids observed through life in men
Cited by: 18
Author(s): Yared Paalvast, Albert Gerding, Yanan Wang, Vincent W. Bloks, Theo H. van Dijk, Rick Havinga, Ko Willems van Dijk, Patrick C.N. Rensen, Barbara M. Bakker, Jan Albert Kuivenhoven, Albert K. Groen
Software Mentions: 5
Published: almost 9 years ago

10.1111/pbi.13446

Genomic analyses reveal the genetic basis of early maturity and identification of loci and candidate genes in upland cotton (Gossypium hirsutum L.)
Cited by: 35
Author(s): Libei Li, Chi Zhang, Jianqin Huang, Qibao Liu, Hengling Wei, Hantao Wang, Guoyuan Liu, Lijiao Gu, Shuang Yu
Software Mentions: 5
Published: about 6 years ago

10.1111/pbi.13085

Development of an integrated 200K <scp>SNP</scp> genotyping array and application for genetic mapping, genome assembly improvement and genome wide association studies in pear (Pyrus)
Cited by: 43
Author(s): Xiaolong Li, Jugpreet Singh, Mengfan Qin, Siwei Li, Xun Zhang, Mingyue Zhang, Awais Khan, Shaoling Zhang
Software Mentions: 5
Published: over 7 years ago

10.1093/aobpla/plx010

Antibiotics impact plant traits, even at small concentrations
Cited by: 69
Author(s): Vanessa Minden, Andrea Deloy, Anna Martina Volkert, Sara D. Leonhardt, Gesine Pufal
Software Mentions: 5
Published: over 9 years ago

10.16910/jemr.13.1.2

Looking (for) patterns: Similarities and differences between infant and adult free scene-viewing patterns
Cited by: 0
Author(s): Daan R. van Renswoude, Maartje E. J. Raijmakers, Ingmar Visser
Software Mentions: 5
Published: over 6 years ago

10.1002/pld3.320

High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in Arabidopsis thaliana
Cited by: 5
Author(s): Wei Xiong, Jiancong Zhang, Ting Lan, Wenwen Kong, Xiaoyan Wang, Lin Liu, Xuemei Chen, Beixin Mo
Software Mentions: 5
Published: over 5 years ago

10.1002/pld3.220

Identification of nodulation‐related genes in Medicago truncatula using genome‐wide association studies and co‐expression networks
Cited by: 4
Author(s): Jean Michel Michno, Junqi Liu, Joseph Jeffers, Robert M. Stupar, Chad L. Myers
Software Mentions: 5
Published: over 6 years ago

10.1002/pld3.239

N6‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis
Cited by: 35
Author(s): Marianne C. Kramer, Kevin A. Janssen, Kyle Palos, Andrew D. L. Nelson, Lee E. Vandivier, Benjamin A. García, Eric Lyons, Mark A. Beilstein, Brian D. Gregory
Software Mentions: 5
Published: about 6 years ago

10.1111/tpj.14202

Gene networks orchestrated by Me<scp>GI</scp>: a single‐factor mechanism underlying sex determination in persimmon
Cited by: 43
Author(s): Ho Wen Yang, Takashi Akagi, Taiji Kawakatsu, Ryutaro Tao
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.02945-19

Universal Dermal Microbiome in Human Skin
Cited by: 67
Author(s): Lene Bay, Christopher J. Barnes, Blaine Gabriel Fritz, Jonathan Thorsen, Marlene Elise Møller Restrup, L. Rasmussen, Johan Kløvgaard Sørensen, Anne Brun Hesselvig, Anders Odgaard, Anders J. Hansen, Thomas Bjarnsholt
Software Mentions: 5
Published: over 6 years ago

10.1128/mBio.03202-19

Reducing Aspergillus fumigatus Virulence through Targeted Dysregulation of the Conidiation Pathway
Cited by: 18
Author(s): James I P Stewart, Vinicius M. Fava, Joshua D. Kerkaert, Adithya S. Subramanian, Fabrice N. Gravelat, Mélanie Lehoux, P. Lynne Howell, Robert A. Cramer, Donald C. Sheppard
Software Mentions: 5
Published: over 6 years ago

10.1155/2021/6641838

Analysis of Molecular Mechanism of Erxian Decoction in Treating Osteoporosis Based on Formula Optimization Model
Cited by: 22
Author(s): Lang Yang, Liuyi Fan, Kexin Wang, Yu-peng Chen, Liuqin Liang, Xuemei Qin, Aiping Lü, Peng Cao, Bin Yu, Daogang Guan, Junxiang Peng
Software Mentions: 5
Published: about 5 years ago

10.34133/2019/5893953

Using High-Throughput Phenotyping to Explore Growth Responses to Mycorrhizal Fungi and Zinc in Three Plant Species
Cited by: 22
Author(s): Stephanie J. Watts‐Williams, Nathaniel Jewell, Chris Brien, Bettina Berger, Trevor Garnett, Timothy R. Cavagnaro
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.03042-19

Quantitative Framework for Model Evaluation in Microbiology Research Using Pseudomonas aeruginosa and Cystic Fibrosis Infection as a Test Case
Cited by: 83
Author(s): Daniel M. Cornforth, Frances L. Diggle, Jeffrey A. Melvin, Jennifer M. Bomberger, Marvin Whiteley
Software Mentions: 5
Published: over 6 years ago

10.3390/plants9121794

Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development
Cited by: 15
Author(s): Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov, Elizaveta Kolganova, Alexandra Sigaeva, Г. И. Карлов, A. A. Soloviev
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.01165-19

A Central Small RNA Regulatory Circuit Controlling Bacterial Denitrification and N 2 O Emissions
Cited by: 12
Author(s): Hannah Gaimster, Claire L. Hews, Ryan D. Griffiths, Manuel J. Soriano-Laguna, Mark Alston, David J. Richardson, Andrew J. Gates, Gary Rowley
Software Mentions: 5
Published: about 7 years ago

10.3390/plants9121775

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains
Cited by: 4
Author(s): Amol N. Nankar, M. Paul Scott, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: about 6 years ago

10.1128/mBio.01500-19

Dissecting the Gene Expression, Localization, Membrane Topology, and Function of the Plasmodium falciparum STEVOR Protein Family
Cited by: 38
Author(s): Jan Stephan Wichers, Jochen Scholz, Jan Strauss, Susanne Witt, Andrés Lill, Laura-Isabell Ehnold, Niklas Neupert, Benjamin Liffner, Renke Lühken, Michaela Petter, Stephan Lorenzen, Danny W. Wilson, Christian Löw, Catherine Lavazec, Iris Bruchhaus, Egbert Tannich, Tim‐Wolf Gilberger, Anna Bachmann
Software Mentions: 5
Published: about 7 years ago

10.1128/AEM.00929-21

Sea-Ice Bacteria Halomonas sp. Strain 363 and Paracoccus sp. Strain 392 Produce Multiple Types of Poly-3-Hydroxyalkaonoic Acid (PHA) Storage Polymers at Low Temperature
Cited by: 7
Author(s): Eeva Eronen-Rasimus, Jenni Hultman, Trần Ngọc Hải, Igor Stelmach Pessi, Eric S. Collins, Shaela Wright, Pia Laine, Sirja Viitamäki, Christina Lyra, David N. Thomas, Peter N. Golyshin, Anne-Mari Luhtanen, Harri Kuosa, Hermanni Kaartokallio
Software Mentions: 5
Published: about 5 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pbio.3000710

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice
Cited by: 18
Author(s): Virlana M. Shchuka, Luis E. Abatti, Huayun Hou, Nawrah Khader, Anna Dorogin, Michael D. Wilson, Oksana Shynlova, Jennifer A. Mitchell
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pcbi.1009182

Sample size calculation for phylogenetic case linkage
Cited by: 7
Author(s): Shirlee Wohl, J. R. Giles, Justin Lessler
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.00093-17

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome
Cited by: 45
Author(s): Carrie A. Zapka, Jonathan W. Leff, Jessica B. Henley, J. Tittl, Elizabeth De Nardo, Melissa S. Butler, Russell K. Griggs, Noah Fierer, Sarah L. Edmonds-Wilson
Software Mentions: 5
Published: over 9 years ago

10.1128/mBio.02079-16

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma
Cited by: 87
Author(s): Gabriel J. Starrett, Christina Marcelus, Paul G. Cantalupo, Joshua P. Katz, Jingwei Cheng, Keiko Akagi, Manisha Thakuria, Guilherme Rabinowits, Linda C. Wang, David E. Symer, James M. Pipas, Reuben S. Harris, James A. DeCaprio
Software Mentions: 5
Published: over 9 years ago

10.1101/2021.01.15.426908

Interferon-regulated genetic programs and JAK/STAT pathway activate the intronic promoter of the short ACE2 isoform in renal proximal tubules
Cited by: 2
Author(s): Jakub Jankowski, Hye Kyung Lee, Julia Wilflingseder, Lothar Hennighausen
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1005591

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Cited by: 10
Author(s): David L. Gibbs, Ilya Shmulevich
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pgen.1006335

Family Based Whole Exome Sequencing Reveals the Multifaceted Role of Notch Signaling in Congenital Heart Disease
Cited by: 54
Author(s): Christoph Preuß, M. Capredon, Florian Wünnemann, Philippe Chétaille, Andrea Prince, Béatrice Godard, Séverine Leclerc, Nara Sobreira, Hua Ling, Philip Awadalla, Maryse Thibeault, Paul Khairy, Mark E. Samuels, Grégor Andelfinger
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pgen.1006643

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Cited by: 102
Author(s): Silva Kasela, Kai Kisand, Liina Tserel, Epp Kaleviste, Anu Remm, Krista Fischer, Tõnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani
Software Mentions: 5
Published: over 9 years ago

10.1128/AEM.02012-16

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils
Cited by: 58
Author(s): Grace Pold, Andrew F. Billings, Jeffrey L. Blanchard, Daniel Burkhardt, Serita D. Frey, Jerry M. Melillo, Julia Schnabel, Linda T. A. van Diepen, Kristen M. DeAngelis
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0245444

The relationship between social support, stressful events, and menopause symptoms
Cited by: 20
Author(s): Megan Arnot, Emily H Emmott, Ruth Mace
Software Mentions: 5
Published: over 5 years ago

10.1101/2020.12.21.423860

Analyzing the vast coronavirus literature with CoronaCentral
Cited by: 3
Author(s): Jake Lever, Russ B. Altman
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
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Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
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Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223616

Increased fecundity of Aphis fabae on Vicia faba plants following seed or leaf inoculation with the entomopathogenic fungus Beauveria bassiana
Cited by: 15
Author(s): Rasmus Emil Jensen, Annie Enkegaard, Tove Steenberg
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
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Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: about 9 years ago

10.1167/tvst.8.5.4

A Method to Calibrate the Carbon Dioxide (Chemical) Stimuli of Pneumatic Esthesiometer Externally
Cited by: 1
Author(s): Varadharajan Jayakumar, Trefford Simpson
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0188772

Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells
Cited by: 21
Author(s): Johan Boström, Zuzana Šrámková, Alena Salašová, Helena A.D. Johard, Diana Mahdessian, Radek Fedr, Carolyn Marks, Jiřina Medalová, Karel Souček, Emma Lundberg, Sten Linnarsson, Vı́tězslav Bryja, Petra Sekyrová, Mikael Altun, Michael Andäng
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0210795

Effects of moderate thermal anomalies on Acropora corals around Sesoko Island, Okinawa
Cited by: 13
Author(s): Tanya Singh, Mariko Iijima, Ko Yasumoto, Kazuhiko Sakai
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
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Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: about 5 years ago

10.1186/s13075-015-0544-2

Transcriptome analysis of ageing in uninjured human Achilles tendon
Cited by: 61
Author(s): Mandy J. Peffers, Yongxiang Fang, Kathleen Cheung, Tim Koh Jia Wei, Peter Clegg, Helen L. Birch
Software Mentions: 5
Published: over 11 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41398-019-0384-y

Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism
Cited by: 63
Author(s): Manav Kapoor, Jen Chyong Wang, Sean P. Farris, Yunlong Liu, Jeanette N. McClintick, Ishaan Gupta, Jacquelyn L. Meyers, Sarah Bertelsen, Michael J. Chao, John I. Nürnberger, Jay A. Tischfield, Oscar Harari, Zeran Li, Victor Hesselbrock, Lance O. Bauer, Towfique Raj, Bernice Porjesz, Arpana Agrawal, Tatiana Foroud, Howard J. Edenberg, R. Dayne Mayfield, Alison Goate
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0230253

Comparing genome-scale DNA methylation and CNV marks between adult human cultured ITGA6+ testicular cells and seminomas to assess in vitro genomic stability
Cited by: 8
Author(s): Robert B. Struijk, Lambert C. J. Dorssers, Peter Henneman, Martin A. Rijlaarsdam, Andrea Venema, Aldo Jongejan, Marcel M.A.M. Mannens, Leendert H. J. Looijenga, Sjoerd Repping, Ans M.M. van Pelt
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0236838

Microplastic contamination of drinking water: A systematic review
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Author(s): E Danopoulos, Maureen Twiddy, Jeanette M. Rotchell
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0255433

Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa
Cited by: 5
Author(s): Stephen Osei-Wusu, Isaac Darko Otchere, Portia Morgan, Abdul Basit Musah, Ishaque Mintah Siam, Diana Asema Asandem, Theophilus Afum, Prince Asare, Adwoa Asante-Poku, Kwadwo Asamoah Kusi, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0247374

Top-down and sideways: Herbivory and cross-ecosystem connectivity shape restoration success at the salt marsh-upland ecotone
Cited by: 8
Author(s): Kerstin Wasson, Karen E. Tanner, Andrea Woofolk, Sean McCain, Justin P. Suraci
Software Mentions: 5
Published: over 5 years ago

10.3390/nu13020432

Is Serum BDNF Altered in Acute, Short- and Long-Term Recovered Restrictive Type Anorexia Nervosa?
Cited by: 6
Author(s): Jonas L Steinhäuser, Joseph A. King, Friederike I. Tam, Maria Seidel, Ronald Biemann, Marie‐Louis Wronski, Daniel Geisler, Veit Roessner, Stefan Ehrlich
Software Mentions: 5
Published: over 5 years ago

10.3390/toxins13080552

Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells
Cited by: 4
Author(s): Ilse Vanhoutte, Caroline De Tender, Kristel Demeyere, Mohamed F. Abdallah, Sarah Ommeslag, Pieter Vermeir, Sarah De Saeger, Jane Debode, Evelyne Meyer, Siska Croubels, Kris Audenaert, Leen De Gelder
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0234985

Effect of TSH on Non-Alcoholic Fatty Liver Disease (NAFLD) independent of obesity in children of predominantly Hispanic/Latino ancestry by causal mediation analysis
Cited by: 4
Author(s): Presley Nichols, Yue Pan, Benjamin May, Martina Pavlicová, John C. Rausch, Ali Mencin, Vidhu Thaker
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: about 8 years ago

10.3390/toxins13050318

Risky Business: The Function of Play in a Venomous Mammal—The Javan Slow Loris (Nycticebus javanicus)
Cited by: 6
Author(s): Meg Barrett, Marco Campera, Thaís Q. Morcatty, Ariana Weldon, Katherine Hedger, Keely Q. Maynard, Muhammad Ali Imron, K. A. I. Nekaris
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236717

Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0186723

Association of birth weight with corneal power in early adolescence: Results from the National Health and Nutrition Examination Survey (NHANES) 1999–2008
Cited by: 20
Author(s): Achim Fieß, Alexander K. Schuster, Norbert Pfeiffer, Stefan Nickels
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0238924

Exploring the potential of comparative de novo transcriptomics to classify Saccharomyces brewing yeasts
Cited by: 1
Author(s): Jürgen Behr, Meike Kliche, Andreas Geißler, Rudi F. Vogel
Software Mentions: 5
Published: almost 6 years ago

10.3758/s13414-020-02007-0

Oculomotor capture by search-irrelevant features in visual working memory: on the crucial role of target–distractor similarity
Cited by: 4
Author(s): Rebecca M. Foerster, Werner X. Schneider
Software Mentions: 5
Published: over 6 years ago

10.18632/aging.102278

Association between promoter DNA methylation and gene expression in the pathogenesis of ischemic stroke
Cited by: 20
Author(s): Guo-Xiong Deng, Ning Xu, Qi Huang, Jin-Yue Tan, Zhao Zhang, Xianfeng Li, Jinru Wei
Software Mentions: 5
Published: almost 7 years ago

10.18632/aging.202801

The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancer
Cited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0215351

The bacterial communities of the small intestine and stool in children with short bowel syndrome
Cited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: over 7 years ago

10.1111/1759-7714.14002

Significance of tumor mutation burden and immune infiltration in thymic epithelial tumors
Cited by: 8
Author(s): Zi-Ming Wang, Qiang Xu, David Kaul, Mahmoud Ismail, Harun Badakhshi
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0216471

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data
Cited by: 17
Author(s): Davide Bolognini, Niccolò Bartalucci, Alessandra Mingrino, Alessandro M. Vannucchi, Alberto Magi
Software Mentions: 5
Published: over 7 years ago

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