cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12885-021-08440-0

Is more better? An analysis of toxicity and response outcomes from dose-finding clinical trials in cancer
Cited by: 1
Author(s): Kristian Brock, Victoria Homer, Gurjinder Soul, Claire Potter, Codruța Chiuzan, Joe Lee
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.11944

Herbivory and misidentification of target habitat constrain region-wide restoration success of spekboom (Portulacaria afra) in South African subtropical succulent thicket
Cited by: 3
Author(s): Marius L. van der Vyver, Anthony Mills, Mark Difford, Richard M. Cowling
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.634116

A Novel Six-mRNA Signature Predicts Survival of Patients With Glioblastoma Multiforme
Cited by: 8
Author(s): Zhentao Liu, Hao Zhang, Haitao Hu, Zengyu Cai, Chengyin Lu, Qiang Liang, Jun Qian, Chunhui Wang, Lei Jiang
Software Mentions: 5
Published: over 5 years ago

10.7150/thno.60031

Astrocytic YAP protects the optic nerve and retina in an experimental autoimmune encephalomyelitis model through TGF-β signaling
Cited by: 27
Author(s): Wei Qian, Xuemeng Miao, Jingjing Zhang, Ludan Xiang, Xiuchun Li, Xiaomei Bao, Siyu Du, Mianxian Wang, Shuangda Miao, Yiren Fan, Wei Wang, Xingxing Xu, Xiya Shen, Dongren Yang, Xiwu Wang, Yuanyuan Fang, Li‐Xin Hu, Xuyi Pan, Haoru Dong, Hui Wang, Ying Wang, Jia Li, Zhihui Huang
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.647861

Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed
Cited by: 4
Author(s): Alyssa A. Carrell, Grace E. Schwartz, Melissa Cregger, Caitlin M. Gionfriddo, Dwayne A. Elias, Regina L. Wilpiszeski, Dawn M. Klingeman, Ann M. Wymore, Katherine A. Muller, Scott C. Brooks
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-020-6665-2

The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice
Cited by: 37
Author(s): Lei Xu, Anil Surathu, Isaac Raplee, Ashok Chockalingam, Sharron Stewart, Lacey Walker, Leonard Sacks, Vikram Patel, Zhihua Li, Rodney Rouse
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.9235

Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-019-47094-8

Odors from phylogenetically-distant plants to Brassicaceae repel an herbivorous Brassica specialist
Cited by: 11
Author(s): Chase A. Stratton, Elisabeth A. Hodgdon, Cesar Rodriguez‐Saona, Anthony M. Shelton, Yolanda H. Chen
Software Mentions: 5
Published: about 7 years ago

10.1111/1759-7714.14002

Significance of tumor mutation burden and immune infiltration in thymic epithelial tumors
Cited by: 8
Author(s): Zi-Ming Wang, Qiang Xu, David Kaul, Mahmoud Ismail, Harun Badakhshi
Software Mentions: 5
Published: over 5 years ago

10.1186/s40478-020-00988-5

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease
Cited by: 64
Author(s): Charlotte Mezö, Nikolaos Dokalis, Omar Mossad, Ori Staszewski, Jana Neuber, Bahtiyar Yılmaz, Daniel Schnepf, Mercedes Gomez de Agüero, Stephanie C. Ganal‐Vonarburg, Andrew J. Macpherson, Melanie Meyer‐Luehmann, Peter Staeheli, Thomas Blank, Marco Prinz, Daniel Erny
Software Mentions: 5
Published: about 6 years ago

10.3390/cancers13092115

Chromatin-Directed Proteomics Identifies ZNF84 as a p53-Independent Regulator of p21 in Genotoxic Stress Response
Cited by: 8
Author(s): Anna Strzeszewska-Potyrała, Karolina Staniak, Joanna Czarnecka‐Herok, Mahmoud-Reza Rafiee, Marcin Herok, Grażyna Mosieniak, Jeroen Krijgsveld, Ewa Sikora
Software Mentions: 5
Published: over 5 years ago

10.3390/cancers11121951

Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia
Cited by: 17
Author(s): Antonella Padella, Giorgia Simonetti, Giulia Paciello, George Giotopoulos, Carmen Baldazzi, Simona Righi, Martina Ghetti, Anna Stengel, Viviana Guadagnuolo, Rossella De Tommaso, Cristina Papayannidis, Valentina Robustelli, Eugenia Franchini, Andrea Ghelli Luserna di Rorà, Anna Ferrari, Maria Chiara Fontana, Samantha Bruno, Emanuela Ottaviani, Simona Soverini, Clelia Tiziana Storlazzi, Claudia Haferlach, Elena Sabattini, Nicoletta Testoni, Ilaria Iacobucci, Brian J.P. Huntly, Elisa Ficarra, Giovanni Martinelli
Software Mentions: 5
Published: over 6 years ago

10.3390/plants9121775

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains
Cited by: 4
Author(s): Amol N. Nankar, M. Paul Scott, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: over 7 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: about 6 years ago

10.3390/ijerph16203969

Socio-Economic and Environmental Factors Related to Spatial Differences in Human Non-Tuberculous Mycobacterial Diseases in the Czech Republic
Cited by: 15
Author(s): Helena Modrá, Vít Ulmann, Jan Caha, Dana Hübelová, Ondřej Konečný, Jana Svobodová, Ross Tim Weston, Ivo Pavlík
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12917-018-1515-z

Cattle transhumance and agropastoral nomadic herding practices in Central Cameroon
Cited by: 29
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Saidou M. Hamman, K. L. Morgan, Victor Ngu Ngwa, Vincent N. Tanya, Eran A. Raizman, Ian Handel, Barend Mark de Clare Bronsvoort
Software Mentions: 5
Published: about 8 years ago

10.1186/s12885-020-6533-0

PDAC-ANN: an artificial neural network to predict pancreatic ductal adenocarcinoma based on gene expression
Cited by: 30
Author(s): Palloma Porto Almeida, Cristina Padre Cardoso, Leandro Martins de Freitas
Software Mentions: 5
Published: over 6 years ago

10.1002/cam4.3959

IBSP, a potential recurrence biomarker, promotes the progression of colorectal cancer via Fyn/β‐catenin signaling pathway
Cited by: 8
Author(s): Cheng Yan, Ying Qin, Mengmeng Dai, Liping Liu, Yicheng Ni, Qiao Sun, Lulu Li, Yaoyao Zhou, Cheng Qiu, Yuyang Jiang
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers12051084

Multimodal Targeted Deep Sequencing of Circulating Tumor Cells and Matched Cell-Free DNA Provides a More Comprehensive Tool to Identify Therapeutic Targets in Metastatic Breast Cancer Patients
Cited by: 13
Author(s): Corinna Keup, Markus Storbeck, Siegfried Hauch, Peter F. Hahn, Markus Sprenger-Haussels, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 5
Published: over 6 years ago

10.1186/s13613-019-0600-1

Prediction of mortality in adult patients with sepsis using six biomarkers: a systematic review and meta-analysis
Cited by: 38
Author(s): Andreas Pregernig, Mattia Müller, Ulrike Held, Beatrice Beck‐Schimmer
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijerph16040614

The Role of Environmental Conditions on Marathon Running Performance in Men Competing in Boston Marathon from 1897 to 2018
Cited by: 20
Author(s): Pantelis Theodoros Nikolaidis, Stefania Di Gangi, Hamdi Chtourou, Christoph Alexander Rüst, Thomas Rosemann, Beat Knechtle
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0121760

medplot: A Web Application for Dynamic Summary and Analysis of Longitudinal Medical Data Based on R
Cited by: 5
Author(s): Črt Ahlin, Daša Stupica, Franc Strle, Lara Lusa
Software Mentions: 5
Published: over 11 years ago

10.3390/toxins13050318

Risky Business: The Function of Play in a Venomous Mammal—The Javan Slow Loris (Nycticebus javanicus)
Cited by: 6
Author(s): Meg Barrett, Marco Campera, Thaís Q. Morcatty, Ariana Weldon, Katherine Hedger, Keely Q. Maynard, Muhammad Ali Imron, K. A. I. Nekaris
Software Mentions: 5
Published: over 5 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: about 5 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0182869

Active microorganisms thrive among extremely diverse communities in cloud water
Cited by: 94
Author(s): Pierre Amato, Muriel Joly, Ludovic Besaury, Anne Oudart, Najwa Taïb, Anne Moné, Laurent Deguillaume, Anne-Marie Delort, Didier Debroas
Software Mentions: 5
Published: about 9 years ago

10.1038/srep40803

Dynamics of Bemisia tabaci biotypes and insecticide resistance in Fujian province in China during 2005–2014
Cited by: 43
Author(s): Feng-Luan Yao, Yu Zheng, Xiaoyan Huang, Xue-Ling Ding, Jiuran Zhao, Nicolas Desneux, Yumei He, Qiyong Weng
Software Mentions: 5
Published: over 9 years ago

10.3390/toxins13080552

Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells
Cited by: 4
Author(s): Ilse Vanhoutte, Caroline De Tender, Kristel Demeyere, Mohamed F. Abdallah, Sarah Ommeslag, Pieter Vermeir, Sarah De Saeger, Jane Debode, Evelyne Meyer, Siska Croubels, Kris Audenaert, Leen De Gelder
Software Mentions: 5
Published: about 5 years ago

10.3389/fphar.2020.592116

Pros and Cons of Aspirin for the Primary Prevention of Cardiovascular Events: A Secondary Study of Trial Sequential Analysis
Cited by: 8
Author(s): Binghao Zhao, Qian Wu, Li Wang, Chen Di Liao, Dong Yan, Jianpeng Xu, Yiping Wei
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.622683

Bioinformatics Analysis Identifies Molecular Markers Regulating Development and Progression of Endometriosis and Potential Therapeutic Drugs
Cited by: 7
Author(s): Ying Peng, Cheng Peng, Fang Zheng, Gang Chen
Software Mentions: 5
Published: about 5 years ago

10.1186/s13756-018-0336-y

Estimating the burden of antimicrobial resistance: a systematic literature review
Cited by: 318
Author(s): Nichola R. Naylor, Rifat Atun, Nina Zhu, Kavian Kulasabanathan, Sachin Silva, Anuja Chatterjee, Gwenan M. Knight, Julie V. Robotham
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.02587

Complementary DNA/RNA-Based Profiling: Characterization of Corrosive Microbial Communities and Their Functional Profiles in an Oil Production Facility
Cited by: 15
Author(s): Silvia J. Salgar-Chaparro, Laura L. Machuca
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12874-016-0229-9

Health Equity Assessment Toolkit (HEAT): software for exploring and comparing health inequalities in countries
Cited by: 64
Author(s): Ahmad Reza Hosseinpoor, Devaki Nambiar, Anne Schlotheuber, Daniel D. Reidpath, Zev Ross
Software Mentions: 5
Published: almost 10 years ago

10.1002/1878-0261.12957

Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder
Cited by: 5
Author(s): Maria V. Luna‐Velez, Jelmer Dijkstra, Marina Augusto Heuschkel, Frank Smit, Guillaume van de Zande, Dominique Smeets, J.P. Michiel Sedelaar, Michiel Vermeulen, Gerald W. Verhaegh, Jack A. Schalken
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-46923-0

The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Cited by: 63
Author(s): Rosalyn Sulyanto, Zachary A. Thompson, Clifford J. Beall, Eugene J. Leys, Ann L. Griffen
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pbio.3000710

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice
Cited by: 18
Author(s): Virlana M. Shchuka, Luis E. Abatti, Huayun Hou, Nawrah Khader, Anna Dorogin, Michael D. Wilson, Oksana Shynlova, Jennifer A. Mitchell
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-021-07924-4

Transcriptomic analysis to elucidate the effects of high stocking density on grass carp (Ctenopharyngodon idella)
Cited by: 10
Author(s): Yan He, Hongyan Yu, Hongling Zhao, Hua Zhu, Qingjing Zhang, Anqi Wang, Yubang Shen, Xiaoyan Xu, Jiale Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s12891-018-2369-z

Can we improve cognitive function among adults with osteoarthritis by increasing moderate-to-vigorous physical activity and reducing sedentary behaviour? Secondary analysis of the MONITOR-OA study
Cited by: 11
Author(s): Ryan S. Falck, John R. Best, Linda Li, Pak Hei Chan, Lynne M. Feehan, Teresa Liu-Ambrose
Software Mentions: 5
Published: over 7 years ago

10.1186/s12885-020-6616-y

Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/−-driven murine colonic adenomas
Cited by: 1
Author(s): Jessica L. Preston, Nicholas Stiffler
Software Mentions: 5
Published: over 6 years ago

10.1007/s13280-020-01360-6

Living with floating vegetation invasions
Cited by: 19
Author(s): Fritz Kleinschroth, R. Scott Winton, Elisa Calamita, Fabian Niggemann, Martina Botter, Bernhard Wehrli, Jaboury Ghazoul
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0092725

ss3sim: An R Package for Fisheries Stock Assessment Simulation with Stock Synthesis
Cited by: 19
Author(s): Sean C. Anderson, Cole C. Monnahan, Kelli F. Johnson, Kotaro Ono, Juan L. Valero
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0205921

Seasonal dynamics of spatial distributions and overlap between Northeast Arctic cod (Gadus morhua) and capelin (Mallotus villosus) in the Barents Sea
Cited by: 29
Author(s): Johanna Fall, Lorenzo Ciannelli, Georg Skaret, Edda Johannesen
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12864-021-07755-3

Identification of candidate genomic regions for chicken egg number traits based on genome-wide association study
Cited by: 10
Author(s): Xiurong Zhao, Changsheng Nie, Jinxin Zhang, Xinghua Li, Tao Zhu, Zi Guan, Yu Chen, Liang Wang, Xue Ze Lv, Weijia Yang, Yaxiong Jia, Zhonghua Ning, Haiying Li, Changqing Qu, Huie Wang, Lujiang Qu
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-019-5974-9

Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice
Cited by: 9
Author(s): Hiroshi Tsujioka, Toshio Yamashita
Software Mentions: 5
Published: about 7 years ago

10.1002/1878-0261.12779

TGF‐β‐induced IGFBP‐3 is a key paracrine factor from activated pericytes that promotes colorectal cancer cell migration and invasion
Cited by: 16
Author(s): Rocío Navarro, Antonio Tapia-Galisteo, Laura Martín-García, Carlos Tarin, Cesáreo Corbacho, Gonzalo Gómez‐López, Esther Sánchez‐Tirado, Susana Campuzano, Paloma Yánez‐Sedeño, Paloma Yánez‐Sedeño, Marta Compte, Luís Álvarez‐Vallina, Laura Sanz
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep37393

Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Cited by: 84
Author(s): Stephan H. Bernhart, Helene Kretzmer, Lesca M. Holdt, Frank Jühling, Ole Ammerpohl, Anke Bergmann, Bernd H. Northoff, Gero Doose, Reiner Siebert, Peter F. Stadler, Steve Hoffmann
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: over 8 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1009182

Sample size calculation for phylogenetic case linkage
Cited by: 7
Author(s): Shirlee Wohl, J. R. Giles, Justin Lessler
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.7150/ijbs.51207

Development of a novel immune-related lncRNA signature as a prognostic classifier for endometrial carcinoma
Cited by: 25
Author(s): Jinhui Liu, Jie Mei, Yichun Wang, Xucheng Chen, Jiadong Pan, Laigen Tong, Yan Zhang
Software Mentions: 5
Published: over 5 years ago

10.7150/ijbs.37399

Gut microbiome associated with APC gene mutation in patients with intestinal adenomatous polyps
Cited by: 38
Author(s): Sai Liang, Yan Mao, Ming Liao, Yali Xu, Ying‐Chun Chen, Xiaoliang Huang, Chuangyi Wei, Changtao Wu, Qiuyan Wang, Xiaoyan Pan, Weizhong Tang
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-07114-8

Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences
Cited by: 12
Author(s): Zhe Zhang, Lei Liu, Melis Kücükoglu, Dongdong Tian, Robert M. Larkin, Xueping Shi, Bo Zheng
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12863-020-0821-1

Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Cited by: 6
Author(s): Jaroslav Klápště, Dean F. Meason, Heidi S. Dungey, Emily Telfer, Paul Silcock, Simon Rapley
Software Mentions: 5
Published: over 6 years ago

10.7150/ijbs.45693

Cancer stem cell property and gene signature in bone-metastatic Breast Cancer cells
Cited by: 7
Author(s): An Luo, Yue Xu, Shujun Li, Jinxia Bao, Jianrong Lu, Nan Ding, Qian Zhao, Yuting Fu, Fei Liu, William C. Cho, Xunbin Wei, Haiyun Wang, Zuoren Yu
Software Mentions: 5
Published: over 6 years ago

10.1002/acn3.50873

Agreement of amyloid PET and CSF biomarkers for Alzheimer's disease on Lumipulse
Cited by: 89
Author(s): Daniel Alcolea, Jordi Malé i Pegueroles, Laia Muñoz, Valle Camacho, Diego Alfonso López-Mora, Alejandro Fernández-León, Nathalie Le Bastard, Els Huyck, Alícia Nadal, Verónica Olmedo, Frederic Sampedro, Víctor Montal, Eduard Vilaplana, Jordi Clarimón, Rafael Blesa, Juan Fortea, Alberto Lleó
Software Mentions: 5
Published: about 7 years ago

10.1038/s41398-019-0384-y

Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism
Cited by: 63
Author(s): Manav Kapoor, Jen Chyong Wang, Sean P. Farris, Yunlong Liu, Jeanette N. McClintick, Ishaan Gupta, Jacquelyn L. Meyers, Sarah Bertelsen, Michael J. Chao, John I. Nürnberger, Jay A. Tischfield, Oscar Harari, Zeran Li, Victor Hesselbrock, Lance O. Bauer, Towfique Raj, Bernice Porjesz, Arpana Agrawal, Tatiana Foroud, Howard J. Edenberg, R. Dayne Mayfield, Alison Goate
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0144060

With a Little Help from My Friends: Group Orientation by Larvae of a Coral Reef Fish
Cited by: 31
Author(s): Jean Olivier Irisson, Claire B. Paris, Leis J.M, Michelle N. Yerman
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0241842

Genetic and physiological traits for internal phosphorus utilization efficiency in rice
Cited by: 11
Author(s): Getnet Dino Adem, Yoshiaki Ueda, Patrick E. Hayes, Matthias Wissuwa
Software Mentions: 5
Published: almost 6 years ago

10.1002/1878-0261.12754

Nonsense‐mediated decay factor SMG7 sensitizes cells to TNFα‐induced apoptosis via CYLD tumor suppressor and the noncoding oncogene <i>Pvt1</i>
Cited by: 8
Author(s): Limeng Yang, Vanessa A N Kraft, Susanne Pfeiffer, Juliane Merl-Pham, Xuanwen Bao, Yu An, Stefanie M. Hauck, Joel Schick
Software Mentions: 5
Published: about 6 years ago

10.3390/metabo10050212

An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: over 6 years ago

10.3389/fphys.2019.01305

The Regulation of Ruminal Short-Chain Fatty Acids on the Functions of Rumen Barriers
Cited by: 28
Author(s): Hong Shen, Zhihui Xu, Zanming Shen, Zhongyan Lu
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0257564

Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas
Cited by: 7
Author(s): Julian Klein, Matthew Low, Göran Thor, Jörgen Sjögren, Eva Lindberg, Sönke Eggers
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0239485

Does behavioral thermal tolerance predict distribution pattern and habitat use in two sympatric Neotropical frogs?
Cited by: 9
Author(s): Juan C. Díaz‐Ricaurte, Filipe C. Serrano, Estefany Carolíne Guevara-Molina, Cybele de Oliveira Araújo, Marcio Roberto Martins
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0236426

Cost-effectiveness of real-world administration of chemotherapy and add-on Viscum album L. therapy compared to chemotherapy in the treatment of stage IV NSCLC patients
Cited by: 3
Author(s): Anja Thronicke, Thomas Reinhold, Philipp von Trott, Christian Grah, Burkhard Matthes, Harald Matthes, Friedemann Schad
Software Mentions: 5
Published: about 6 years ago

10.1186/s12866-018-1221-9

Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Cited by: 50
Author(s): Deni Ribičić, Kelly M. McFarlin, Roman Netzer, Odd Gunnar Brakstad, Anderson M. Winkler, Mimmi Throne-Holst, Trond Røvik Størseth
Software Mentions: 5
Published: about 8 years ago

10.1038/s41396-020-0625-3

Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association
Cited by: 22
Author(s): Christopher Freeman, Cole G. Easson, Kenan O. Matterson, Robert Thacker, David M. Baker, Valerie J. Paul
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.lmot.2018.07.003

A re-examination of responding on ratio and regulated-probability interval schedules
Cited by: 6
Author(s): Omar David Pérez, Michael R. F. Aitken, Amy Milton, Anthony Dickinson
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41396-020-0701-8

Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers
Cited by: 85
Author(s): Shufeng Li, Haiying Wu, Liming Chen, Jiawen Wang, Maosheng Zheng, Sitong Liu, Qian Chen, Jinren Ni
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2020.01943

Commonalities and Differences in the Transcriptional Response of the Model Fungus Saccharomyces cerevisiae to Different Commercial Graphene Oxide Materials
Cited by: 4
Author(s): Felix Laguna-Teno, María Suárez-Diez, Juan Antonio Tamayo-Ramos
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.695124

Folate Deficiency Triggers the Abnormal Segregation of a Region With Large Cluster of CG-Rich Trinucleotide Repeats on Human Chromosome 2
Cited by: 1
Author(s): Lorenza Garribba, Ivan Vogel, Mads Lerdrup, Marisa M Gonçalves Dinis, Liqun Ren, Ying Liu
Software Mentions: 5
Published: about 5 years ago

10.18632/aging.102278

Association between promoter DNA methylation and gene expression in the pathogenesis of ischemic stroke
Cited by: 20
Author(s): Guo-Xiong Deng, Ning Xu, Qi Huang, Jin-Yue Tan, Zhao Zhang, Xianfeng Li, Jinru Wei
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pcbi.1005591

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Cited by: 10
Author(s): David L. Gibbs, Ilya Shmulevich
Software Mentions: 5
Published: about 9 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1006335

Family Based Whole Exome Sequencing Reveals the Multifaceted Role of Notch Signaling in Congenital Heart Disease
Cited by: 54
Author(s): Christoph Preuß, M. Capredon, Florian Wünnemann, Philippe Chétaille, Andrea Prince, Béatrice Godard, Séverine Leclerc, Nara Sobreira, Hua Ling, Philip Awadalla, Maryse Thibeault, Paul Khairy, Mark E. Samuels, Grégor Andelfinger
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pgen.1006643

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Cited by: 102
Author(s): Silva Kasela, Kai Kisand, Liina Tserel, Epp Kaleviste, Anu Remm, Krista Fischer, Tõnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani
Software Mentions: 5
Published: over 9 years ago

10.7554/eLife.54318

Rapamycin rejuvenates oral health in aging mice
Cited by: 52
Author(s): Jonathan Y. An, Kristopher A. Kerns, Andrew Ouellette, Laura Robinson, H Douglas Morris, Catherine C. Kaczorowski, So-Il Park, Title Mekvanich, Alex Kang, Jeffrey S. McLean, Timothy C. Cox, Matt Kaeberlein
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2020.616998

Application of an Autophagy-Related Gene Prognostic Risk Model Based on TCGA Database in Cervical Cancer
Cited by: 16
Author(s): Huadi Shi, Fulan Zhong, Xiaoqiong Yi, Zhenyi Shi, Feiyan Ou, Zhonghua Xu, Yufang Zuo
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0008671

Novel small RNAs expressed by Bartonella bacilliformis under multiple conditions reveal potential mechanisms for persistence in the sand fly vector and human host
Cited by: 6
Author(s): Shaun Wachter, Linda D. Hicks, Rahul Raghavan, Michael F. Minnick
Software Mentions: 5
Published: almost 6 years ago

10.1167/tvst.8.5.4

A Method to Calibrate the Carbon Dioxide (Chemical) Stimuli of Pneumatic Esthesiometer Externally
Cited by: 1
Author(s): Varadharajan Jayakumar, Trefford Simpson
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2021.707299

Esophageal Cancer Associated Immune Genes as Biomarkers for Predicting Outcome in Upper Gastrointestinal Tumors
Cited by: 9
Author(s): Chuanhui Zhu, Qianqian Xia, Bin Gu, Mengjing Cui, Xing Zhang, Wenjing Yan, Dan Meng, Siyuan Shen, Shuqian Xie, Xueliang Li, Hua Jin, Shizhi Wang
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.610704

Investigation on Potential Correlation Between Small Nuclear Ribonucleoprotein Polypeptide A and Lung Cancer
Cited by: 6
Author(s): Maoxi Yuan, Chunxiao Yu, Xin Chen, Yubing Wu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0005701

The interplay of climate, intervention and imported cases as determinants of the 2014 dengue outbreak in Guangzhou
Cited by: 30
Author(s): Qu Cheng, Qinlong Jing, Robert C. Spear, John M. Marshall, Zhicong Yang, Peng Gong
Software Mentions: 5
Published: about 9 years ago

10.18632/aging.202801

The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancer
Cited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: over 5 years ago

10.1186/s40360-020-00450-1

Broad Spectrum epidemiological contribution of cannabis and other substances to the teratological profile of northern New South Wales: geospatial and causal inference analysis
Cited by: 31
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-021-07787-9

The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis
Cited by: 9
Author(s): Xin Hu, Jian‐Fang Zuo
Software Mentions: 5
Published: about 5 years ago

10.3390/metabo9060113

Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s Disease
Cited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2020.602542

Integrated Analysis of lncRNA-Mediated ceRNA Network Reveals a Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Jian-Rong Sun, Chen-Fan Kong, Kunmin Xiao, Jia-Lu Yang, Xiang-Ke Qu, Jinghui Sun
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0007910

Dispersal patterns of Trypanosoma cruzi in Arequipa, Peru
Cited by: 4
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Arevalo-Nieto, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 5
Published: over 6 years ago

10.1186/s12876-018-0860-5

Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection
Cited by: 56
Author(s): Jillian R. Brown, Burkhardt Flemer, Susan A. Joyce, Akbar Zulquernain, Donal Sheehan, Fergus Shanahan, Paul W. O’Toole
Software Mentions: 5
Published: about 8 years ago

10.1038/s41396-019-0518-5

Density-dependent oxylipin production in natural diatom communities: possible implications for plankton dynamics
Cited by: 18
Author(s): Ennio Russo, Giuliana d’Ippolito, Angelo Fontana, Diana Sarno, Domenico D’Alelio, Greta Busseni, Adrianna Ianora, Eric von Elert, Ylenia Carotenuto
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0241231

A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
Cited by: 7
Author(s): Joel H. Nitta, Atsushi Ebihara, Alan Р. Smith
Software Mentions: 5
Published: almost 6 years ago

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