cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0106381

Diagnostic Accuracy of Computer-Aided Detection of Pulmonary Tuberculosis in Chest Radiographs: A Validation Study from Sub-Saharan Africa
Cited by: 71
Author(s): Marianne Breuninger, Bram van Ginneken, Rick H. H. M. Philipsen, Francis Mhimbira, Jerry Hella, Fred Lwilla, Jan van den Hombergh, Amanda Ross, Levan Jugheli, Dirk Wagner, Klaus Reither
Software Mentions: 5
Published: almost 12 years ago

10.3389/fmicb.2021.665858

Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuni
Cited by: 6
Author(s): Hai‐Yan Cao, Hanxiao Xu, Ning Cai, Xiang Li, Ren Qiu-fang, Tiantian Zhang, Yusen Zhang, Rui Gao
Software Mentions: 5
Published: about 5 years ago

10.3390/ijerph17072406

Side Streams of Broccoli Leaves: A Climate Smart and Healthy Food Ingredient
Cited by: 19
Author(s): Emilia Berndtsson, Roger Andersson, Eva Johansson, Marie Olsson
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.8184

Investigating the effects of management practice on mammalian co-occurrence along the West Coast of South Africa
Cited by: 2
Author(s): Deborah Jean Winterton, Nicola J. van Wilgen, Jan A. Venter
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.7633

Prey preferences of the chimpanzee (Pan troglodytes)
Cited by: 2
Author(s): Cassandra K. Bugir, Thomas M. Butynski, Matt Hayward
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.5444

Darwin’s naturalization hypothesis does not explain the spread of nonnative weed species naturalized in México
Cited by: 0
Author(s): Judith Sánchez-Blanco, Ernesto V. Vega-Peña, Francisco J. Espinosa‐García
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-32917-x

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: over 7 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: over 8 years ago

10.1186/s40168-020-00969-9

Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation
Cited by: 39
Author(s): Taylor A. Breuninger, Nina Wawro, Jakob Breuninger, Sandra Reitmeier, Thomas Clavel, Julia Six-Merker, Giulia Pestoni, Sabine Rohrmann, Wolfgang Rathmann, Annette Peters, Harald Grallert, Christa Meisinger, Dirk Haller, Jakob Linseisen
Software Mentions: 5
Published: over 5 years ago

10.3389/fphar.2020.592116

Pros and Cons of Aspirin for the Primary Prevention of Cardiovascular Events: A Secondary Study of Trial Sequential Analysis
Cited by: 8
Author(s): Binghao Zhao, Qian Wu, Li Wang, Chen Di Liao, Dong Yan, Jianpeng Xu, Yiping Wei
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-021-01001-4

The bacterial communities of Alaskan mosses and their contributions to N2-fixation
Cited by: 26
Author(s): Hannah Holland‐Moritz, Julia Stuart, Lily R. Lewis, Samantha N. Miller, Michelle C. Mack, José Miguel Ponciano, Stuart F. McDaniel, Noah Fierer
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2021.696878

Classification of Osteosarcoma Based on Immunogenomic Profiling
Cited by: 14
Author(s): Xinwen Wang, Liangming Wang, Weifeng Xu, Xinwu Wang, Dianshan Ke, Jiumao Lin, Wanzun Lin, Xiaochun Bai
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13068-018-1215-8

The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973
Cited by: 42
Author(s): Xiaoming Tan, Songjun Hou, Kuo Song, Jens Georg, Stephan Klähn, Xuefeng Lü, Wolfgang R. Hess
Software Mentions: 5
Published: almost 8 years ago

10.1186/s40168-018-0496-2

Signatures of ecological processes in microbial community time series
Cited by: 64
Author(s): Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D. Washburne, Didier Gonze, Stefanie Widder
Software Mentions: 5
Published: almost 8 years ago

10.1002/ece3.6196

Competition with insectivorous ants as a contributor to low songbird diversity at low elevations in the eastern Himalaya
Cited by: 12
Author(s): K. Supriya, Trevor D. Price, Corrie S. Moreau
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.7410

Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies
Cited by: 29
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Chetan C. Gaonkar, Roberta Piredda
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0226397

An open-sourced, web-based application to improve our ability to understand hunter and angler purchasing behavior from license data
Cited by: 0
Author(s): Nathaniel B. Price, Christopher J. Chizinski, Joseph J. Fontaine, Kevin L. Pope, Micaela Rahe, J. Rawlinson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pbio.3000710

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice
Cited by: 18
Author(s): Virlana M. Shchuka, Luis E. Abatti, Huayun Hou, Nawrah Khader, Anna Dorogin, Michael D. Wilson, Oksana Shynlova, Jennifer A. Mitchell
Software Mentions: 5
Published: almost 6 years ago

10.3390/plants9121775

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains
Cited by: 4
Author(s): Amol N. Nankar, M. Paul Scott, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.3389/fphar.2018.00305

Frequency of CYP2D6 Alleles Including Structural Variants in the United States
Cited by: 81
Author(s): Andria L. Del Tredici, Alka Malhotra, Matthew Dedek, Frank G. Espin, Daniel E. Roach, Guang dan Zhu, Joseph R. Voland, Tanya A. Moreno
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0080822

Bacterial Endosymbiosis in a Chordate Host: Long-Term Co-Evolution and Conservation of Secondary Metabolism
Cited by: 50
Author(s): Jason C. Kwan, Eric W. Schmidt
Software Mentions: 5
Published: over 12 years ago

10.1186/s13071-020-04424-4

Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Cited by: 3
Author(s): Maksim A. Nesterenko, Viktor V. Starunov, Sergei V. Shchenkov, Anna R. Maslova, Sofia Denisova, Andrey I. Granovich, Andrej A. Dobrovolskij, Konstantin Khalturin
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-67774-0

Lifestyle preferences drive the structure and diversity of bacterial and archaeal communities in a small riverine reservoir
Cited by: 7
Author(s): Carles M. Borrego, Sergi Sabater, Lorenzo Proia
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-41452-2

Using Bacterial Transcriptomics to Investigate Targets of Host-Bacterial Interactions in Caenorhabditis elegans
Cited by: 21
Author(s): Jason P. Chan, Justin Wright, Hoi Tong Wong, Anastasia Ardasheva, Jamey T. Brumbaugh, Christopher J. McLimans, Regina Lamendella
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-020-68933-z

Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing
Cited by: 14
Author(s): Daisuke Tanaka, So Fujiyoshi, Fumito Maruyama, Motoshi Goto, Shinichi Koyama, Jun-ichi Kanatani, Junko Isobe, Masanori Watahiki, Akihiro Sakatoku, Shigehiro Kagaya, Shōgo Nakamura
Software Mentions: 5
Published: almost 6 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: about 6 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-018-30657-6

Deep Learning and Radiomics predict complete response after neo-adjuvant chemoradiation for locally advanced rectal cancer
Cited by: 125
Author(s): Jean‐Emmanuel Bibault, P. Giraud, M. Housset, C. Durdux, Julien Taieb, Anne Berger, Romain Coriat, Stanislas Chaussade, B. Dousset, Bernard Nordlinger, Anita Burgun
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13058-015-0613-0

Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles
Cited by: 62
Author(s): Krista Vincent, Scott D. Findlay, Lynne-Marie Postovit
Software Mentions: 5
Published: almost 11 years ago

10.3390/pathogens9120997

A Paradox in Bacterial Pathogenesis: Activation of the Local Macrophage Inflammasome Is Required for Virulence of Streptococcus uberis
Cited by: 10
Author(s): Nathan Archer, Sharon A. Egan, Tracey J. Coffey, Richard D. Emes, Maria Filippa Addis, Philip N. Ward, Adam Blanchard, James A. Leigh
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-29860-2

The rubber hand illusion induced by visual-thermal stimulation
Cited by: 12
Author(s): Jörg Trojan, Xaver Fuchs, Sophie-Louise Speth, Martin Diers
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-68487-0

Variations in foliar carbon:nitrogen and nitrogen:phosphorus ratios under global change: a meta-analysis of experimental field studies
Cited by: 15
Author(s): Shan Xu, Jordi Sardans, Jinlong Zhang, Josep Peñuelas
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.ppat.1009441

Viral infection of human neurons triggers strain-specific differences in host neuronal and viral transcriptomes
Cited by: 8
Author(s): Colleen A. Mangold, Molly M. Rathbun, Daniel W. Renner, Chad V. Kuny, Moriah L. Szpara
Software Mentions: 5
Published: over 5 years ago

10.3389/fped.2020.00052

A Multidisciplinary Intervention in Childhood Obesity Acutely Improves Insulin Resistance and Inflammatory Markers Independent From Body Composition
Cited by: 7
Author(s): Ernst Mayerhofer, Franz Ratzinger, Nina Elvira Kienreich, Annika Stiel, Nadine Witzeneder, Eva Schrefl, Georg Greiner, Christoph Wegscheider, Irene Graf, Klaus G. Schmetterer, Rodrig Marculescu, Thomas Szekeres, Thomas Perkmann, Martina Fondi, Oswald Wagner, Harald Esterbauer, Matthias Mayerhofer, Stefana Holocher-Ertl, Claudia Wojnarowski, Gregor Hoermann
Software Mentions: 5
Published: over 6 years ago

10.3389/fped.2021.709765

Delivery Modality Affect Neonatal Levels of Inflammation, Stress, and Growth Factors
Cited by: 2
Author(s): Pia Kiilerich, Rikke Cortes, Ulrik Lausten-Thomsen, Nis Borbye‐Lorenzen, Solveig Holmgaard, Kristin Skogstrand
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-69111-x

Changes in the vaginal microbiota across a gradient of urbanization
Cited by: 21
Author(s): Daniela Vargas-Robles, Natalia Morales, Iveth Rodríguez, Tahidid Nieves, Filipa Godoy-Vitorino, Luis David Alcaraz, María-Eglée Pérez, Jacques Ravel, Larry J. Forney, Maria Gloria Domínguez-Bello
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-69607-6

Great apes selectively retrieve relevant memories to guide action
Cited by: 8
Author(s): Katarzyna Bobrowicz, Mikael Johansson, Mathias Osvath
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.ppat.1009349

PD-1 is imprinted on cytomegalovirus-specific CD4+ T cells and attenuates Th1 cytokine production whilst maintaining cytotoxicity
Cited by: 15
Author(s): Helen Parry, Alexander C. Dowell, Jianmin Zuo, Kriti Verma, Francesca Kinsella, Jusnara Begum, Wayne Croft, Archana Sharma-Oates, Guy Pratt, Paul Moss
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: almost 5 years ago

10.3390/ijerph18115971

Ecological, Social, and Other Environmental Determinants of Dengue Vector Abundance in Urban and Rural Areas of Northeastern Thailand
Cited by: 17
Author(s): Siddikur Rahman, Tipaya Ekalaksananan, Sumaira Zafar, Petchaboon Poolphol, Oleg V. Shipin, Ubydul Haque, Paul Rácz, Joacim Rocklöv, Chamsai Pientong, Hans J. Overgaard
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-69672-x

A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota
Cited by: 39
Author(s): Rodrigo Alegria Terrazas, Katharin Balbirnie-Cumming, Jenny Morris, Pete E. Hedley, Joanne Russell, Eric Paterson, Elizabeth M. Baggs, Eyal Fridman, Davide Bulgarelli
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.7085

Evidence of postbreeding prospecting in a long‐distance migrant
Cited by: 7
Author(s): Max Ciaglo, Ross Calhoun, Scott W. Yanco, Michael B. Wunder, Craig A. Stricker, Brian D. Linkhart
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijerph17165630

Covariates and Spatial Interpolation of HIV Screening in Mozambique: Insight from the 2015 AIDS Indicator Survey
Cited by: 1
Author(s): Pascal Agbadi, Jerry John Nutor, Ernest Darkwah, Henry Ofori Duah, Precious Adade Duodu, Robert Kaba Alhassan, Kimberly Baltzell
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2018.00973

A Novel Strategy for Detecting Recent Horizontal Gene Transfer and Its Application to Rhizobium Strains
Cited by: 15
Author(s): Xiangchen Li, Wenjun Tong, Lina Wang, Siddiq Ur Rahman, Gehong Wei, Shiheng Tao
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.ppat.1009256

A murine model of Lyme disease demonstrates that Borrelia burgdorferi colonizes the dura mater and induces inflammation in the central nervous system
Cited by: 23
Author(s): Timothy Casselli, Ali Divan, Emilie E. Vomhof-DeKrey, Yvonne Tourand, Heidi L. Pecoraro, Catherine A. Brissette
Software Mentions: 5
Published: over 5 years ago

10.3390/cells9061534

Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted Vesicles
Cited by: 13
Author(s): Natalia Díaz-Garrido, Sarah Bonnin, Marta Riera, Rosa Gíménez, Josefa Badı́a, Laura Baldomà
Software Mentions: 5
Published: about 6 years ago

10.3389/fimmu.2021.647688

Epigenetic Features of HIV-Induced T-Cell Exhaustion Persist Despite Early Antiretroviral Therapy
Cited by: 12
Author(s): Geneviève Martin, Debattama R. Sen, Matthew Pace, Nicola Robinson, Jodi Meyerowitz, Emily Adland, John Thornhill, Mathew Jones, Ane Ogbe, Lucia Parolini, Natalia Olejniczak, Panagiota Zacharopoulou, Helen Brown, Christian Willberg, Nneka Nwokolo, Julie Fox, Sarah Fidler, W. Nicholas Haining, John Frater
Software Mentions: 5
Published: about 5 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: almost 8 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1005591

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Cited by: 10
Author(s): David L. Gibbs, Ilya Shmulevich
Software Mentions: 5
Published: about 9 years ago

10.1098/rspb.2018.2697

Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome
Cited by: 38
Author(s): Susana Carvalho, Eva Aylagas, Rodrigo Villalobos, Yasser Kattan, Michael L. Berumen, John K. Pearman
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2017.01120

The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition
Cited by: 31
Author(s): Heng Gui, Witoon Purahong, Kevin D. Hyde, Jianchu Xu, Peter E. Mortimer
Software Mentions: 5
Published: about 9 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2016.00772

Molecular Evidence for Metabolically Active Bacteria in the Atmosphere
Cited by: 72
Author(s): Ann M. Klein, Brendan J. M. Bohannan, Daniel A. Jaffe, David A. Levin, Jessica L. Green
Software Mentions: 5
Published: about 10 years ago

10.3389/fonc.2020.01088

MMP25 Regulates Immune Infiltration Level and Survival Outcome in Head and Neck Cancer Patients
Cited by: 8
Author(s): Yujie Liang, Chenyu Guan, Kan Li, Guanghui Zheng, Tao Wang, Sien Zhang, Guiqing Liao
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0201664

Call and be counted! Can we reliably estimate the number of callers in the indri's (Indri indri) song?
Cited by: 17
Author(s): Valeria Torti, Daria Valente, Chiara De Gregorio, Carlo Comazzi, Longondraza Miaretsoa, Jonah Ratsimbazafy, Cristina Giacoma, Marco Gamba
Software Mentions: 5
Published: almost 8 years ago

10.3390/pathogens9070592

Mycobacterium bovis Population Structure in Cattle and Local Badgers: Co-Localisation and Variation by Farm Type
Cited by: 6
Author(s): Georgina Milne, Adrian Allen, Jordon Graham, Raymond Kirke, Carl McCormick, Eleanor Presho, Robin Skuce, Andrew Byrne
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.ppat.1009101

RV144 HIV-1 vaccination impacts post-infection antibody responses
Cited by: 12
Author(s): Thembi Mdluli, Ningbo Jian, Bonnie M. Slike, Dominic Paquin‐Proulx, G. Donofrio, Aljawharah Alrubayyi, Syna Kuriakose Gift, Rebecca Grande, Mary Bryson, Anna Lee, Vincent Dussupt, Letzibeth Mendez-Riveria, Eric Sanders‐Buell, Agnès‐Laurence Chenine, Ursula Tran, Yifan Li, Eric N. Brown, Paul T. Edlefsen, Robert J. O’Connell, Peter B. Gilbert, Sorachai Nitayaphan, Punnee Pitisuttihum, Supachai Rerks-Ngarm, Merlin L. Robb, Robert A. Gramzinski, Galit Alter, Sodsai Tovanabutra, Ivelin S. Georgiev, Margaret E. Ackerman, Victoria R. Polonis, Sandhya Vasan, Nelson L. Michael, Jerome H. Kim, Michael A. Eller, Shelly J. Krebs, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1006335

Family Based Whole Exome Sequencing Reveals the Multifaceted Role of Notch Signaling in Congenital Heart Disease
Cited by: 54
Author(s): Christoph Preuß, M. Capredon, Florian Wünnemann, Philippe Chétaille, Andrea Prince, Béatrice Godard, Séverine Leclerc, Nara Sobreira, Hua Ling, Philip Awadalla, Maryse Thibeault, Paul Khairy, Mark E. Samuels, Grégor Andelfinger
Software Mentions: 5
Published: over 9 years ago

10.3389/fimmu.2020.550769

HDAC3 Mediates the Inflammatory Response and LPS Tolerance in Human Monocytes and Macrophages
Cited by: 26
Author(s): Mohammed Ghiboub, Jing Zhao, Andrew Y. Li Yim, Ronald Schilderink, Caroline Verseijden, Patricia H. P. van Hamersveld, José Duarte, Theodorus B. M. Hakvoort, Iris Admiraal, Nicola Harker, David F. Tough, Peter Henneman, Menno P.J. de Winther, Wouter J. de Jonge
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1006643

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Cited by: 102
Author(s): Silva Kasela, Kai Kisand, Liina Tserel, Epp Kaleviste, Anu Remm, Krista Fischer, Tõnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.ppat.1008986

Qualitative Differences Between the IFNα subtypes and IFNβ Influence Chronic Mucosal HIV-1 Pathogenesis
Cited by: 21
Author(s): Kejun Guo, Guannan Shen, Jon Kibbie, Tanía González, Stephanie M. Dillon, Harry A. Smith, Emily Cooper, Kerry J. Lavender, Kim J. Hasenkrug, Kathrin Sutter, Ulf Dittmer, Miranda Kroehl, Katerina Kechris, Cara C. Wilson, Mario L. Santiago
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1008346

Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells
Cited by: 28
Author(s): Tzu‐Chun Chen, Marc Talló-Parra, Qian M. Cao, Sebastián Kadener, René Böttcher, Gemma Pérez‐Vilaró, Pakpoom Boonchuen, Kunlaya Somboonwiwat, Juana Díez, Peter Sarnow
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0171710

Mapping the sensory perception of apple using descriptive sensory evaluation in a genome wide association study
Cited by: 46
Author(s): Beatrice Amyotte, Amy Bowen, Travis Banks, Istvan Rajcan, Daryl J. Somers
Software Mentions: 5
Published: over 9 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response toTheileria parvaand other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: about 12 years ago

10.1017/S0031182019001628

Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity
Cited by: 7
Author(s): Sharon A. Lynch, S. Lepée-Rivero, Rochelle M. Kelly, EA Quinn, Andy Coghlan, B. Bookelaar, E. Morgan, John A. Finarelli, Jens Carlsson, Sarah C. Culloty
Software Mentions: 5
Published: over 6 years ago

10.3390/foods8080332

Influence of Kiwifruit Extract Infusion on Consumer Sensory Outcomes of Striploin (M. longissimus lumborum) and Outside Flat (M. biceps femoris) from Beef Carcasses
Cited by: 7
Author(s): A. M. Lees, Małgorzata Konarska, Garth Tarr, Rod Polkinghorne, P. McGilchrist
Software Mentions: 5
Published: almost 7 years ago

10.1051/parasite/2020062

Increasing importance of anthelmintic resistance in European livestock: creation and meta-analysis of an open database
Cited by: 89
Author(s): Hannah Rose Vineer, Eric R. Morgan, Hubertus Hertzberg, David J. Bartley, Antonio Bosco, Johannes Charlier, Christophe Chartier, Edwin Claerebout, Theo de Waal, Guy Hendrickx, Barbara Hinney, Johan Höglund, Jožica Ježek, Martin Kašný, Orla M. Keane, María Martínez‐Valladares, Teresa Letra Mateus, Jennifer McIntyre, Marcin Mickiewicz, Ana María Muñoz, Clare J Phythian, H.W. Ploeger, Aleksandra Vergles Rataj, Philip Skuce, Stanislav Simin, Smaragda Sotiraki, Marina Spînu, Snorre Stuen, Stig Milan Thamsborg, Jaroslav Vadlejch, Marián Várady, Georg von Samson‐Himmelstjerna, Laura Rinaldi
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-70206-8

Remote, autonomous real-time monitoring of environmental DNA from commercial fish
Cited by: 28
Author(s): Brian Klitgaard Hansen, Marianne Jacobsen, Anne Lise Middelboe, Christina M. Preston, Roman Marin, Dorte Bekkevold, Steen Wilhelm Knudsen, Peter Rask Møller, Einar Eg Nielsen
Software Mentions: 5
Published: almost 6 years ago

10.1001/jamanetworkopen.2021.27002

Racial and Ethnic Differences in Cannabis Use Following Legalization in US States With Medical Cannabis Laws
Cited by: 40
Author(s): Sílvia S. Martins, Luís Segura, Natalie S. Levy, Pia M. Mauro, Christine Mauro, Morgan M. Philbin, Deborah S. Hasin
Software Mentions: 5
Published: over 4 years ago

10.3389/fbioe.2017.00084

Meta-Analysis of Aedes aegypti Expression Datasets: Comparing Virus Infection and Blood-Fed Transcriptomes to Identify Markers of Virus Presence
Cited by: 11
Author(s): Kiyoshi F. Fukutani, José Irahe Kasprzykowski, Alexandre Rossi Paschoal, Matheus de Souza Gomes, Aldina Barral, Camila I. de Oliveira, Pablo Ivan Pereira Ramos, Artur T. L. Queiroz
Software Mentions: 5
Published: over 8 years ago

10.3390/foods9121851

Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi
Cited by: 12
Author(s): Narciso M. Quijada, Stephan Schmitz‐Esser, Benjamin Zwirzitz, C. Guse, Cameron Strachan, Martin Wagner, Stefanie U. Wetzels, Evelyne Selberherr, Monika Dzieciol
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-68617-8

The origin of early Acheulean expansion in Europe 700 ka ago: new findings at Notarchirico (Italy)
Cited by: 34
Author(s): Marie‐Hélène Moncel, Carmen Santagata, Alison Pereira, Sébastien Nomade, Pierre Voinchet, Jean‐Jacques Bahain, Camille Daujeard, Antonio Curci, Cristina Lemorini, Bruce Hardy, Giacomo Eramo, Claudio Berto, Jean‐Paul Raynal, Marta Arzarello, Beniamino Mecozzi, Alessio Iannucci, Raffaele Sardella, Ignazio Allegretta, Emanuela Delluniversità, Roberto Terzano, Pauline Dugas, Gwenolé Jouanic, Alain Queffelec, Andrea D’Andrea, Rosario Valentini, Eleonora Minucci, Laura Carpentiero, Marcello Piperno
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-021-01058-1

Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact
Cited by: 7
Author(s): Émie Audet‐Gilbert, François‐Étienne Sylvain, Sidki Bouslama, Nicolas Derôme
Software Mentions: 5
Published: about 5 years ago

10.1007/s00213-019-05218-y

Microbe and host interaction in gastrointestinal homeostasis
Cited by: 18
Author(s): Rachael Horne, James St. Pierre, Sufian Odeh, Michael G. Surette, Jane A. Foster
Software Mentions: 5
Published: over 7 years ago

10.3390/ijms21176033

Identification of Novel Targets of Knee Osteoarthritis Shared by Cartilage and Synovial Tissue
Cited by: 8
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 5
Published: almost 6 years ago

10.3389/fbioe.2020.598392

Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance
Cited by: 6
Author(s): Maryna Vasylkivska, Barbora Branská, Karel Sedlář, Katerina Jureckova, Ivo Provazník, Petra Patáková
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6836

Don’t stand so close to me: Microbiota‐facilitated enemy release dynamics in introduced Onthophagus taurus dung beetles
Cited by: 5
Author(s): Erik Parker, Armin P. Moczek
Software Mentions: 5
Published: over 5 years ago

10.1007/s00442-021-04977-w

Bank vole alarm pheromone chemistry and effects in the field
Cited by: 1
Author(s): Thorbjörn Sievert, Hannu Ylönen, James D. Blande, Amélie Saunier, Dave van der Hulst, Olga Ylönen, Marko Haapakoski
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-71355-6

Combining genetic markers with stable isotopes in otoliths reveals complexity in the stock structure of Atlantic bluefin tuna (Thunnus thynnus)
Cited by: 16
Author(s): Deirdre Brophy, Naiara Rodríguez-Ezpeleta, Igaratza Fraile, Haritz Arrizabalaga
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-72206-0

Behavioral and trophic segregations help the Tahiti petrel to cope with the abundance of wedge-tailed shearwater when foraging in oligotrophic tropical waters
Cited by: 7
Author(s): Andréas Ravache, Karen Bourgeois, Henri Weimerskirch, Angélique Pagenaud, Sophie de Grissac, Mark G. R. Miller, Sylvain Dromzée, Anne Lorrain, Valérie Allain, Paco Bustamante, Jonas Bylemans, Dianne Gleeson, Yves Letourneur, Éric Vidal
Software Mentions: 5
Published: almost 6 years ago

10.3390/foods10061431

Synergistic Effects of the Jackfruit Seed Sourced Resistant Starch and Bifidobacterium pseudolongum subsp. globosum on Suppression of Hyperlipidemia in Mice
Cited by: 8
Author(s): Zhen Zeng, Yuanyuan Wang, Yanjun Zhang, Kaining Chen, Haibo Chang, Chenchen Ma, Shuaiming Jiang, Dongxue Huo, Wenjun Liu, Rajesh Jha, Jiachao Zhang
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.01212

Diverse Microbial Composition of Sourdoughs From Different Origins
Cited by: 50
Author(s): Andrea Comasio, Marko Verce, Simon Van Kerrebroeck, Luc De Vuyst
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms21176382

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus
Cited by: 17
Author(s): Stanislav R. Kurpe, Sergei Y. Grishin, Alexey K. Surin, Olga M. Selivanova, Р. С. Фадеев, Ulyana F. Dzhus, E. Yu. Gorbunova, Leila G. Mustaeva, Vyacheslav N. Azev, Oxana V. Galzitskaya
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.2592

Size differences of Arctic marine protists between two climate periods—using the paleoecological record to assess the importance of within‐species trait variation
Cited by: 12
Author(s): Erik Askov Mousing, Sofia Ribeiro, Chelsea Chisholm, Antoon Kuijpers, Matthias Moros, Marianne Ellegaard
Software Mentions: 5
Published: over 9 years ago

10.3390/ijms22020678

JAZF1, A Novel p400/TIP60/NuA4 Complex Member, Regulates H2A.Z Acetylation at Regulatory Regions
Cited by: 15
Author(s): Tara Procida, Tobias Friedrich, Antonia Jack, Martina Peritore, Clemens Bönisch, H. Christian Eberl, Nadine Daus, Konstantin Kletenkov, Andrea Nist, Thorsten Stiewe, Tilman Borggrefe, Matthias Mann, Marek Bartkuhn, Sandra B. Hake
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2020.00559

The TCR Repertoire Reconstitution in Multiple Sclerosis: Comparing One-Shot and Continuous Immunosuppressive Therapies
Cited by: 22
Author(s): Roberta Amoriello, Victor Greiff, Alessandra Aldinucci, Elena Bonechi, Alberto Carnasciali, Benedetta Peruzzi, Anna Maria Repice, Alice Mariottini, Riccardo Saccardi, Benedetta Mazzanti, Luca Massacesi, Clara Ballerini
Software Mentions: 5
Published: about 6 years ago

10.3389/fbioe.2021.701778

Towards the Experimentally-Informed In Silico Nozzle Design Optimization for Extrusion-Based Bioprinting of Shear-Thinning Hydrogels
Cited by: 24
Author(s): Esther Reina-Romo, Sourav Mandal, Paulo Alexandre Amorim, Veerle Bloemen, Eleonora Ferraris, Liesbet Geris
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms8040559

Comparative Transcriptomics Reveals Distinct Gene Expressions of a Model Ciliated Protozoan Feeding on Bacteria-Free Medium, Digestible, and Digestion-Resistant Bacteria
Cited by: 9
Author(s): Songbao Zou, Qianqian Zhang, Jun Gong
Software Mentions: 5
Published: about 6 years ago

10.3389/fmed.2021.716869

An Immune Signature Robustly Predicts Clinical Deterioration for Hepatitis C Virus-Related Early-Stage Cirrhosis Patients
Cited by: 1
Author(s): Cheng Guo, Chunyan Dong, Junjie Zhang, Rui Wang, Zhe Wang, Jie Zhou, Wei Wang, Bing Ji, Ben Ma, Yanli Ge, Zhirong Wang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2019.01083

LCTL Is a Prognostic Biomarker and Correlates With Stromal and Immune Infiltration in Gliomas
Cited by: 12
Author(s): Jun Su, Qianquan Ma, Wenyong Long, Hailin Tang, Changwu Wu, Mei Luo, Xiangyu Wang, Kai Xiao, Li Yang, Qian Xiao, Chi Zhang, Haoyu Li, Qing Liu
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0236717

Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0186723

Association of birth weight with corneal power in early adolescence: Results from the National Health and Nutrition Examination Survey (NHANES) 1999–2008
Cited by: 20
Author(s): Achim Fieß, Alexander K. Schuster, Norbert Pfeiffer, Stefan Nickels
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0238924

Exploring the potential of comparative de novo transcriptomics to classify Saccharomyces brewing yeasts
Cited by: 1
Author(s): Jürgen Behr, Meike Kliche, Andreas Geißler, Rudi F. Vogel
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms7080233

Antibiotic-Induced Perturbations Are Manifested in the Dominant Intestinal Bacterial Phyla of Atlantic Salmon
Cited by: 35
Author(s): S. R. Gupta, Jorge M.O. Fernandes, Viswanath Kiron
Software Mentions: 5
Published: almost 7 years ago

10.3389/fcvm.2020.615161

Comprehensive Integration of Single-Cell Transcriptional Profiling Reveals the Heterogeneities of Non-cardiomyocytes in Healthy and Ischemic Hearts
Cited by: 21
Author(s): Lingfang Zhuang, Lin Lü, Ruiyan Zhang, Kang Chen, Xiaoxiang Yan
Software Mentions: 5
Published: over 5 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441